Multiple sequence alignment - TraesCS4A01G257000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G257000 chr4A 100.000 2492 0 0 1 2492 569876552 569879043 0.000000e+00 4602.0
1 TraesCS4A01G257000 chr4B 87.199 1578 83 47 56 1597 47504788 47503294 0.000000e+00 1685.0
2 TraesCS4A01G257000 chr4B 88.942 416 22 14 1960 2365 47502985 47502584 2.230000e-135 492.0
3 TraesCS4A01G257000 chr4B 93.023 43 3 0 1 43 47507323 47507281 2.070000e-06 63.9
4 TraesCS4A01G257000 chr4D 88.226 1257 57 34 757 1968 32503114 32501904 0.000000e+00 1417.0
5 TraesCS4A01G257000 chr4D 90.888 428 19 9 1939 2365 32501897 32501489 7.790000e-155 556.0
6 TraesCS4A01G257000 chr4D 85.919 419 29 16 328 744 32503846 32503456 1.070000e-113 420.0
7 TraesCS4A01G257000 chr4D 91.304 69 4 2 2424 2492 32501473 32501407 2.640000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G257000 chr4A 569876552 569879043 2491 False 4602.000000 4602 100.000000 1 2492 1 chr4A.!!$F1 2491
1 TraesCS4A01G257000 chr4B 47502584 47507323 4739 True 746.966667 1685 89.721333 1 2365 3 chr4B.!!$R1 2364
2 TraesCS4A01G257000 chr4D 32501407 32503846 2439 True 621.625000 1417 89.084250 328 2492 4 chr4D.!!$R1 2164

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 2637 0.099968 CATGAGCCTGAAATGCACCG 59.9 55.0 0.0 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1534 4408 0.033208 TGGGATGGACCAAAGATGCC 60.033 55.0 0.0 0.0 41.2 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 3.621558 GGGTAACTGCTCTATTTTGGCT 58.378 45.455 0.00 0.00 0.00 4.75
47 48 4.017126 GGGTAACTGCTCTATTTTGGCTT 58.983 43.478 0.00 0.00 0.00 4.35
48 49 4.142381 GGGTAACTGCTCTATTTTGGCTTG 60.142 45.833 0.00 0.00 0.00 4.01
50 51 3.439857 ACTGCTCTATTTTGGCTTGGA 57.560 42.857 0.00 0.00 0.00 3.53
51 52 3.766545 ACTGCTCTATTTTGGCTTGGAA 58.233 40.909 0.00 0.00 0.00 3.53
52 53 3.507622 ACTGCTCTATTTTGGCTTGGAAC 59.492 43.478 0.00 0.00 0.00 3.62
53 54 3.760684 CTGCTCTATTTTGGCTTGGAACT 59.239 43.478 0.00 0.00 0.00 3.01
54 55 3.758554 TGCTCTATTTTGGCTTGGAACTC 59.241 43.478 0.00 0.00 0.00 3.01
66 2547 3.426695 GCTTGGAACTCATGAAACCATCG 60.427 47.826 13.45 10.05 0.00 3.84
67 2548 2.710377 TGGAACTCATGAAACCATCGG 58.290 47.619 10.00 0.00 0.00 4.18
68 2549 2.039746 TGGAACTCATGAAACCATCGGT 59.960 45.455 10.00 0.00 37.65 4.69
69 2550 2.678336 GGAACTCATGAAACCATCGGTC 59.322 50.000 0.00 0.00 33.12 4.79
74 2555 3.861840 TCATGAAACCATCGGTCTCTTC 58.138 45.455 0.00 0.00 33.12 2.87
79 2560 5.235516 TGAAACCATCGGTCTCTTCTTAAC 58.764 41.667 0.00 0.00 33.12 2.01
83 2564 6.210287 ACCATCGGTCTCTTCTTAACTAAG 57.790 41.667 0.00 0.00 34.65 2.18
94 2575 7.607991 TCTCTTCTTAACTAAGGAAATGGCAAG 59.392 37.037 0.00 0.00 34.14 4.01
102 2583 4.341366 AAGGAAATGGCAAGTCTTTTGG 57.659 40.909 0.00 0.00 0.00 3.28
110 2591 2.385315 GCAAGTCTTTTGGCTCGTTTC 58.615 47.619 0.00 0.00 30.01 2.78
112 2593 3.621794 CAAGTCTTTTGGCTCGTTTCAG 58.378 45.455 0.00 0.00 30.01 3.02
115 2596 3.312697 AGTCTTTTGGCTCGTTTCAGAAC 59.687 43.478 0.00 0.00 0.00 3.01
116 2597 3.064820 GTCTTTTGGCTCGTTTCAGAACA 59.935 43.478 0.00 0.00 35.44 3.18
119 2603 3.691049 TTGGCTCGTTTCAGAACAAAG 57.309 42.857 0.00 0.00 35.44 2.77
149 2633 1.065273 CCGCATGAGCCTGAAATGC 59.935 57.895 0.00 0.00 42.59 3.56
153 2637 0.099968 CATGAGCCTGAAATGCACCG 59.900 55.000 0.00 0.00 0.00 4.94
163 2647 3.329386 TGAAATGCACCGAGAGAGAAAG 58.671 45.455 0.00 0.00 0.00 2.62
173 2657 0.899019 AGAGAGAAAGAGAACGGGGC 59.101 55.000 0.00 0.00 0.00 5.80
192 2684 2.812591 GGCATCTGACATCACCATCATC 59.187 50.000 0.00 0.00 0.00 2.92
193 2685 2.479275 GCATCTGACATCACCATCATCG 59.521 50.000 0.00 0.00 0.00 3.84
194 2686 2.229675 TCTGACATCACCATCATCGC 57.770 50.000 0.00 0.00 0.00 4.58
226 2718 4.212214 GTGTGGACTGAACTGAAGATCAAC 59.788 45.833 0.00 0.00 0.00 3.18
251 2743 3.963428 ACTAGCATCGTTATCCATCCC 57.037 47.619 0.00 0.00 0.00 3.85
257 2749 3.369892 GCATCGTTATCCATCCCAGCTAT 60.370 47.826 0.00 0.00 0.00 2.97
258 2750 4.141937 GCATCGTTATCCATCCCAGCTATA 60.142 45.833 0.00 0.00 0.00 1.31
310 2802 2.490991 CCTATTTTCCGATCCCCGTTC 58.509 52.381 0.00 0.00 36.31 3.95
319 2811 3.976701 ATCCCCGTTCCGCTTGCAG 62.977 63.158 0.00 0.00 0.00 4.41
321 2813 2.978010 CCCGTTCCGCTTGCAGTT 60.978 61.111 0.00 0.00 0.00 3.16
322 2814 2.252260 CCGTTCCGCTTGCAGTTG 59.748 61.111 0.00 0.00 0.00 3.16
323 2815 2.427410 CGTTCCGCTTGCAGTTGC 60.427 61.111 0.00 0.00 42.50 4.17
336 2828 1.075659 AGTTGCAGGGAAGAAGGGC 59.924 57.895 0.00 0.00 0.00 5.19
432 2925 2.671632 CGCATCGCATCTCATCTCATCT 60.672 50.000 0.00 0.00 0.00 2.90
445 2938 0.103937 CTCATCTCCCCTGCTTCGTC 59.896 60.000 0.00 0.00 0.00 4.20
450 2943 0.682855 CTCCCCTGCTTCGTCTCTCT 60.683 60.000 0.00 0.00 0.00 3.10
454 2947 1.681780 CCCTGCTTCGTCTCTCTCTCT 60.682 57.143 0.00 0.00 0.00 3.10
455 2948 1.670811 CCTGCTTCGTCTCTCTCTCTC 59.329 57.143 0.00 0.00 0.00 3.20
456 2949 2.632377 CTGCTTCGTCTCTCTCTCTCT 58.368 52.381 0.00 0.00 0.00 3.10
457 2950 2.609459 CTGCTTCGTCTCTCTCTCTCTC 59.391 54.545 0.00 0.00 0.00 3.20
458 2951 2.236146 TGCTTCGTCTCTCTCTCTCTCT 59.764 50.000 0.00 0.00 0.00 3.10
473 2966 3.028130 TCTCTCTCTCTCTCGAGCTGTA 58.972 50.000 7.81 0.00 37.19 2.74
477 2970 2.159014 TCTCTCTCTCGAGCTGTACTCC 60.159 54.545 7.81 0.00 43.01 3.85
530 3032 2.947938 CTAATCCGTGCCCCTGCTGG 62.948 65.000 1.89 1.89 38.71 4.85
563 3065 1.289160 CAATGTGAAGGAGGGAGGGA 58.711 55.000 0.00 0.00 0.00 4.20
564 3066 1.211457 CAATGTGAAGGAGGGAGGGAG 59.789 57.143 0.00 0.00 0.00 4.30
565 3067 0.327000 ATGTGAAGGAGGGAGGGAGG 60.327 60.000 0.00 0.00 0.00 4.30
566 3068 1.690985 GTGAAGGAGGGAGGGAGGG 60.691 68.421 0.00 0.00 0.00 4.30
567 3069 1.866997 TGAAGGAGGGAGGGAGGGA 60.867 63.158 0.00 0.00 0.00 4.20
568 3070 1.074850 GAAGGAGGGAGGGAGGGAG 60.075 68.421 0.00 0.00 0.00 4.30
569 3071 2.613576 GAAGGAGGGAGGGAGGGAGG 62.614 70.000 0.00 0.00 0.00 4.30
570 3072 4.179599 GGAGGGAGGGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
571 3073 3.036959 GAGGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
572 3074 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
573 3075 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
574 3076 3.369388 GGAGGGAGGGAGGGAGGT 61.369 72.222 0.00 0.00 0.00 3.85
625 3127 4.748144 CCCTTGTGCCCTCCTGCC 62.748 72.222 0.00 0.00 0.00 4.85
744 3246 2.824041 AATGGCCATCGTCCGTGC 60.824 61.111 21.08 0.00 0.00 5.34
746 3577 4.758251 TGGCCATCGTCCGTGCTG 62.758 66.667 0.00 0.00 0.00 4.41
749 3580 2.815211 CCATCGTCCGTGCTGGTG 60.815 66.667 0.00 0.00 39.52 4.17
845 3688 1.626654 CGCCACAGCTACAAGGAACG 61.627 60.000 0.00 0.00 36.60 3.95
944 3787 6.880529 TCATTCATTCATCAGTGAGTGCTTAA 59.119 34.615 0.00 0.00 40.68 1.85
958 3801 3.055747 AGTGCTTAACTACCTCCAAGCTC 60.056 47.826 6.70 3.45 43.00 4.09
981 3824 2.334653 GAGCCGATCGAGCTGAGG 59.665 66.667 28.07 8.15 41.75 3.86
982 3825 3.206211 GAGCCGATCGAGCTGAGGG 62.206 68.421 28.07 7.47 41.75 4.30
983 3826 3.219928 GCCGATCGAGCTGAGGGA 61.220 66.667 18.66 0.00 0.00 4.20
984 3827 2.786495 GCCGATCGAGCTGAGGGAA 61.786 63.158 18.66 0.00 0.00 3.97
1029 3872 2.223618 CCTGCTACTTTACTCCTCGCTC 60.224 54.545 0.00 0.00 0.00 5.03
1045 3894 0.525311 GCTCCTGCTTCTCCTTTTGC 59.475 55.000 0.00 0.00 36.03 3.68
1046 3895 1.885790 GCTCCTGCTTCTCCTTTTGCT 60.886 52.381 0.00 0.00 36.03 3.91
1047 3896 2.616510 GCTCCTGCTTCTCCTTTTGCTA 60.617 50.000 0.00 0.00 36.03 3.49
1084 3935 3.886505 CCTAGCCTCTACTACTCAAGGTG 59.113 52.174 0.00 0.00 0.00 4.00
1108 3959 1.666189 GCGTGCCAAGATCTTCTTACC 59.334 52.381 4.57 0.00 33.78 2.85
1114 3965 3.738590 GCCAAGATCTTCTTACCGTCTCC 60.739 52.174 4.57 0.00 33.78 3.71
1142 3993 4.514577 ACCGCCGCATCTTCCTCG 62.515 66.667 0.00 0.00 0.00 4.63
1178 4032 1.942657 GCTGATGTATCATGTTGCCGT 59.057 47.619 0.00 0.00 36.02 5.68
1179 4033 2.032549 GCTGATGTATCATGTTGCCGTC 60.033 50.000 0.00 0.00 36.02 4.79
1180 4034 2.200899 TGATGTATCATGTTGCCGTCG 58.799 47.619 0.00 0.00 0.00 5.12
1181 4035 0.937304 ATGTATCATGTTGCCGTCGC 59.063 50.000 0.00 0.00 0.00 5.19
1182 4036 1.272715 GTATCATGTTGCCGTCGCG 59.727 57.895 0.00 0.00 38.08 5.87
1183 4037 2.521771 TATCATGTTGCCGTCGCGC 61.522 57.895 0.00 0.00 38.08 6.86
1228 4082 1.065199 TGCATTACCAGCTCAAGGAGG 60.065 52.381 0.00 0.00 0.00 4.30
1392 4255 2.214216 CCACTTCCACCTGTCCGGA 61.214 63.158 0.00 0.00 36.31 5.14
1398 4261 2.046892 CACCTGTCCGGAGCCTTG 60.047 66.667 3.06 0.00 36.31 3.61
1443 4306 0.889186 CCACCAACTACAAGCCGCTT 60.889 55.000 0.00 0.00 0.00 4.68
1492 4355 1.153628 CCGATCCTCAACCCGTGAC 60.154 63.158 0.00 0.00 31.13 3.67
1493 4356 1.516386 CGATCCTCAACCCGTGACG 60.516 63.158 0.00 0.00 31.13 4.35
1520 4394 1.401199 GCCTGCTCAAGAAGAAGATGC 59.599 52.381 0.00 0.00 31.23 3.91
1525 4399 3.750130 TGCTCAAGAAGAAGATGCTTGAC 59.250 43.478 0.00 0.00 42.03 3.18
1571 4445 1.947456 CCATCACAGATCACATGGCTG 59.053 52.381 0.00 1.69 35.81 4.85
1617 4491 3.868757 TGCGCTAAGATCAACTACACT 57.131 42.857 9.73 0.00 0.00 3.55
1618 4492 4.976224 TGCGCTAAGATCAACTACACTA 57.024 40.909 9.73 0.00 0.00 2.74
1619 4493 4.669318 TGCGCTAAGATCAACTACACTAC 58.331 43.478 9.73 0.00 0.00 2.73
1620 4494 4.398358 TGCGCTAAGATCAACTACACTACT 59.602 41.667 9.73 0.00 0.00 2.57
1621 4495 4.735822 GCGCTAAGATCAACTACACTACTG 59.264 45.833 0.00 0.00 0.00 2.74
1653 4527 1.318576 CAAGGAGTGGTTGTTGGGAC 58.681 55.000 0.00 0.00 0.00 4.46
1711 4585 4.943705 TGATGATGATGATGATGATGCTGG 59.056 41.667 0.00 0.00 0.00 4.85
1718 4592 4.634012 TGATGATGATGCTGGATGATCA 57.366 40.909 12.98 12.98 38.82 2.92
1726 4600 5.061179 TGATGCTGGATGATCAACTACATG 58.939 41.667 0.00 0.00 0.00 3.21
1736 4613 6.220726 TGATCAACTACATGCTGCTAGTAA 57.779 37.500 0.00 0.00 0.00 2.24
1758 4638 2.254546 TGGAGGTGTTGCACTAACTG 57.745 50.000 0.00 0.00 40.05 3.16
1780 4685 0.676151 CAGCTGCTTCTGAGTTCCCC 60.676 60.000 0.00 0.00 36.19 4.81
1833 4768 8.864069 AATTAAGAGACTGATATCACTTCGTG 57.136 34.615 0.00 0.00 32.61 4.35
1874 4809 2.951642 ACAAGGTCCTGTCAACACATTG 59.048 45.455 0.00 6.65 37.72 2.82
1883 4818 5.776208 TCCTGTCAACACATTGGTACTACTA 59.224 40.000 0.00 0.00 36.39 1.82
1884 4819 6.268158 TCCTGTCAACACATTGGTACTACTAA 59.732 38.462 0.00 0.00 36.39 2.24
1890 4828 9.426837 TCAACACATTGGTACTACTAAACATAC 57.573 33.333 0.00 0.00 36.39 2.39
1904 4842 1.722011 ACATACGCGACCTTTTCTGG 58.278 50.000 15.93 0.00 0.00 3.86
1919 4857 5.432885 TTTTCTGGATCGTCTGGAAAAAC 57.567 39.130 0.00 0.00 34.41 2.43
1924 4862 5.358442 TCTGGATCGTCTGGAAAAACAAAAA 59.642 36.000 0.00 0.00 0.00 1.94
1975 4954 9.998381 GTTTTATTTACAAGAAAAATGGTACGC 57.002 29.630 0.00 0.00 0.00 4.42
2080 5060 1.004185 GCTACGCTCATCATTGCTGTG 60.004 52.381 0.00 0.00 0.00 3.66
2097 5077 1.248486 GTGGCCTTGTCTTTTCCTCC 58.752 55.000 3.32 0.00 0.00 4.30
2121 5101 1.335496 GAACTTGTGCCCGTAAGCAAA 59.665 47.619 0.00 0.00 46.19 3.68
2246 5227 0.666274 TACTCGCGTCAGCCAACAAG 60.666 55.000 5.77 0.00 41.18 3.16
2254 5235 1.732259 GTCAGCCAACAAGATACGTGG 59.268 52.381 0.00 0.00 0.00 4.94
2280 5261 5.405797 TGATCGTGTGATTTCTCTCTTCTG 58.594 41.667 0.00 0.00 34.09 3.02
2307 5288 3.197116 CGGTTAGGGTAATGAAGTGGAGT 59.803 47.826 0.00 0.00 0.00 3.85
2316 5297 5.912955 GGTAATGAAGTGGAGTTCGTTTTTG 59.087 40.000 6.92 0.00 37.03 2.44
2331 5312 4.107622 CGTTTTTGCCCATTGATGATCTC 58.892 43.478 0.00 0.00 0.00 2.75
2335 5319 7.495055 GTTTTTGCCCATTGATGATCTCTTAT 58.505 34.615 0.00 0.00 0.00 1.73
2365 5349 6.705381 ACAGAATTTCAAGTTCAGTGAGAGAG 59.295 38.462 0.00 0.00 0.00 3.20
2367 5351 7.869937 CAGAATTTCAAGTTCAGTGAGAGAGTA 59.130 37.037 0.00 0.00 0.00 2.59
2368 5352 7.870445 AGAATTTCAAGTTCAGTGAGAGAGTAC 59.130 37.037 0.00 0.00 0.00 2.73
2369 5353 6.465439 TTTCAAGTTCAGTGAGAGAGTACA 57.535 37.500 0.00 0.00 0.00 2.90
2370 5354 6.465439 TTCAAGTTCAGTGAGAGAGTACAA 57.535 37.500 0.00 0.00 0.00 2.41
2371 5355 6.078202 TCAAGTTCAGTGAGAGAGTACAAG 57.922 41.667 0.00 0.00 0.00 3.16
2372 5356 4.513198 AGTTCAGTGAGAGAGTACAAGC 57.487 45.455 0.00 0.00 0.00 4.01
2373 5357 3.057876 AGTTCAGTGAGAGAGTACAAGCG 60.058 47.826 0.00 0.00 0.00 4.68
2374 5358 1.813178 TCAGTGAGAGAGTACAAGCGG 59.187 52.381 0.00 0.00 0.00 5.52
2375 5359 1.813178 CAGTGAGAGAGTACAAGCGGA 59.187 52.381 0.00 0.00 0.00 5.54
2376 5360 2.425312 CAGTGAGAGAGTACAAGCGGAT 59.575 50.000 0.00 0.00 0.00 4.18
2377 5361 2.425312 AGTGAGAGAGTACAAGCGGATG 59.575 50.000 0.00 0.00 0.00 3.51
2378 5362 2.164624 GTGAGAGAGTACAAGCGGATGT 59.835 50.000 0.00 0.00 37.32 3.06
2380 5364 3.182967 GAGAGAGTACAAGCGGATGTTG 58.817 50.000 0.00 0.00 34.75 3.33
2381 5365 1.661112 GAGAGTACAAGCGGATGTTGC 59.339 52.381 0.00 0.00 34.75 4.17
2382 5366 0.727398 GAGTACAAGCGGATGTTGCC 59.273 55.000 0.00 0.00 34.75 4.52
2383 5367 0.324943 AGTACAAGCGGATGTTGCCT 59.675 50.000 0.00 0.00 34.75 4.75
2384 5368 0.727398 GTACAAGCGGATGTTGCCTC 59.273 55.000 0.00 0.00 34.75 4.70
2385 5369 0.613260 TACAAGCGGATGTTGCCTCT 59.387 50.000 0.00 0.00 34.75 3.69
2386 5370 0.613260 ACAAGCGGATGTTGCCTCTA 59.387 50.000 0.00 0.00 0.00 2.43
2387 5371 1.210478 ACAAGCGGATGTTGCCTCTAT 59.790 47.619 0.00 0.00 0.00 1.98
2388 5372 2.434336 ACAAGCGGATGTTGCCTCTATA 59.566 45.455 0.00 0.00 0.00 1.31
2389 5373 3.062763 CAAGCGGATGTTGCCTCTATAG 58.937 50.000 0.00 0.00 0.00 1.31
2390 5374 1.001406 AGCGGATGTTGCCTCTATAGC 59.999 52.381 0.00 0.00 0.00 2.97
2391 5375 1.941668 GCGGATGTTGCCTCTATAGCC 60.942 57.143 0.00 0.00 0.00 3.93
2392 5376 1.620819 CGGATGTTGCCTCTATAGCCT 59.379 52.381 0.00 0.00 0.00 4.58
2393 5377 2.611473 CGGATGTTGCCTCTATAGCCTG 60.611 54.545 0.00 0.00 0.00 4.85
2394 5378 2.370189 GGATGTTGCCTCTATAGCCTGT 59.630 50.000 0.00 0.00 0.00 4.00
2395 5379 2.988010 TGTTGCCTCTATAGCCTGTG 57.012 50.000 0.00 0.00 0.00 3.66
2396 5380 2.466846 TGTTGCCTCTATAGCCTGTGA 58.533 47.619 0.00 0.00 0.00 3.58
2397 5381 3.041211 TGTTGCCTCTATAGCCTGTGAT 58.959 45.455 0.00 0.00 0.00 3.06
2398 5382 3.181462 TGTTGCCTCTATAGCCTGTGATG 60.181 47.826 0.00 0.00 0.00 3.07
2399 5383 2.682594 TGCCTCTATAGCCTGTGATGT 58.317 47.619 0.00 0.00 0.00 3.06
2400 5384 2.366590 TGCCTCTATAGCCTGTGATGTG 59.633 50.000 0.00 0.00 0.00 3.21
2401 5385 2.289320 GCCTCTATAGCCTGTGATGTGG 60.289 54.545 0.00 0.00 0.00 4.17
2402 5386 2.968574 CCTCTATAGCCTGTGATGTGGT 59.031 50.000 0.00 0.00 0.00 4.16
2403 5387 3.244009 CCTCTATAGCCTGTGATGTGGTG 60.244 52.174 0.00 0.00 0.00 4.17
2404 5388 3.374764 TCTATAGCCTGTGATGTGGTGT 58.625 45.455 0.00 0.00 0.00 4.16
2405 5389 2.408271 ATAGCCTGTGATGTGGTGTG 57.592 50.000 0.00 0.00 0.00 3.82
2406 5390 0.324614 TAGCCTGTGATGTGGTGTGG 59.675 55.000 0.00 0.00 0.00 4.17
2407 5391 1.228245 GCCTGTGATGTGGTGTGGT 60.228 57.895 0.00 0.00 0.00 4.16
2408 5392 1.518056 GCCTGTGATGTGGTGTGGTG 61.518 60.000 0.00 0.00 0.00 4.17
2409 5393 0.179020 CCTGTGATGTGGTGTGGTGT 60.179 55.000 0.00 0.00 0.00 4.16
2410 5394 0.946528 CTGTGATGTGGTGTGGTGTG 59.053 55.000 0.00 0.00 0.00 3.82
2411 5395 1.100463 TGTGATGTGGTGTGGTGTGC 61.100 55.000 0.00 0.00 0.00 4.57
2412 5396 1.100463 GTGATGTGGTGTGGTGTGCA 61.100 55.000 0.00 0.00 0.00 4.57
2413 5397 0.178995 TGATGTGGTGTGGTGTGCAT 60.179 50.000 0.00 0.00 0.00 3.96
2414 5398 0.241749 GATGTGGTGTGGTGTGCATG 59.758 55.000 0.00 0.00 0.00 4.06
2415 5399 1.808531 ATGTGGTGTGGTGTGCATGC 61.809 55.000 11.82 11.82 0.00 4.06
2416 5400 2.123982 TGGTGTGGTGTGCATGCA 60.124 55.556 18.46 18.46 0.00 3.96
2417 5401 1.531128 TGGTGTGGTGTGCATGCAT 60.531 52.632 25.64 0.00 0.00 3.96
2418 5402 1.080366 GGTGTGGTGTGCATGCATG 60.080 57.895 25.64 22.70 0.00 4.06
2419 5403 1.080366 GTGTGGTGTGCATGCATGG 60.080 57.895 25.64 10.03 0.00 3.66
2420 5404 2.125832 GTGGTGTGCATGCATGGC 60.126 61.111 25.64 19.18 0.00 4.40
2421 5405 2.283316 TGGTGTGCATGCATGGCT 60.283 55.556 25.64 0.00 0.00 4.75
2422 5406 1.001145 TGGTGTGCATGCATGGCTA 60.001 52.632 25.64 11.99 0.00 3.93
2457 5441 8.413309 TTGAGCAAAGGTTACTAGAGTAGTAA 57.587 34.615 0.00 2.98 46.03 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.498397 CGCGAGGTAAAATGGCATCTAAT 59.502 43.478 0.00 0.00 0.00 1.73
6 7 1.299541 CGCGAGGTAAAATGGCATCT 58.700 50.000 0.00 0.00 0.00 2.90
43 44 2.238521 TGGTTTCATGAGTTCCAAGCC 58.761 47.619 11.41 1.87 0.00 4.35
44 45 3.426695 CGATGGTTTCATGAGTTCCAAGC 60.427 47.826 15.80 8.84 32.98 4.01
46 47 3.081061 CCGATGGTTTCATGAGTTCCAA 58.919 45.455 15.80 0.00 32.98 3.53
47 48 2.039746 ACCGATGGTTTCATGAGTTCCA 59.960 45.455 14.71 14.71 32.98 3.53
48 49 2.678336 GACCGATGGTTTCATGAGTTCC 59.322 50.000 0.00 0.85 35.25 3.62
50 51 3.261897 AGAGACCGATGGTTTCATGAGTT 59.738 43.478 8.94 0.00 39.01 3.01
51 52 2.834549 AGAGACCGATGGTTTCATGAGT 59.165 45.455 8.94 0.00 39.01 3.41
52 53 3.533606 AGAGACCGATGGTTTCATGAG 57.466 47.619 8.94 0.00 39.01 2.90
53 54 3.515502 AGAAGAGACCGATGGTTTCATGA 59.484 43.478 8.94 0.00 39.01 3.07
54 55 3.866651 AGAAGAGACCGATGGTTTCATG 58.133 45.455 8.94 0.00 39.01 3.07
66 2547 6.316640 GCCATTTCCTTAGTTAAGAAGAGACC 59.683 42.308 0.51 0.00 35.33 3.85
67 2548 6.879458 TGCCATTTCCTTAGTTAAGAAGAGAC 59.121 38.462 0.51 0.00 35.33 3.36
68 2549 7.016153 TGCCATTTCCTTAGTTAAGAAGAGA 57.984 36.000 0.51 0.00 35.33 3.10
69 2550 7.391833 ACTTGCCATTTCCTTAGTTAAGAAGAG 59.608 37.037 0.51 0.00 35.33 2.85
74 2555 7.454260 AAGACTTGCCATTTCCTTAGTTAAG 57.546 36.000 0.00 0.00 0.00 1.85
79 2560 5.473039 CCAAAAGACTTGCCATTTCCTTAG 58.527 41.667 0.00 0.00 0.00 2.18
83 2564 2.037641 AGCCAAAAGACTTGCCATTTCC 59.962 45.455 0.00 0.00 0.00 3.13
94 2575 3.064820 TGTTCTGAAACGAGCCAAAAGAC 59.935 43.478 0.00 0.00 38.28 3.01
127 2611 1.865788 TTTCAGGCTCATGCGGTTGC 61.866 55.000 0.00 0.00 40.82 4.17
133 2617 0.179119 GGTGCATTTCAGGCTCATGC 60.179 55.000 13.51 13.51 43.13 4.06
149 2633 2.414824 CCGTTCTCTTTCTCTCTCGGTG 60.415 54.545 0.00 0.00 33.39 4.94
153 2637 1.134936 GCCCCGTTCTCTTTCTCTCTC 60.135 57.143 0.00 0.00 0.00 3.20
163 2647 0.179000 ATGTCAGATGCCCCGTTCTC 59.821 55.000 0.00 0.00 0.00 2.87
173 2657 2.479275 GCGATGATGGTGATGTCAGATG 59.521 50.000 0.00 0.00 0.00 2.90
193 2685 4.796495 GTCCACACCCCCGATGGC 62.796 72.222 0.00 0.00 33.20 4.40
194 2686 3.009115 AGTCCACACCCCCGATGG 61.009 66.667 0.00 0.00 34.58 3.51
226 2718 5.864474 GGATGGATAACGATGCTAGTACTTG 59.136 44.000 0.00 0.00 0.00 3.16
268 2760 1.512694 GGCCAAGAATTTCAGCCGG 59.487 57.895 0.00 0.00 33.18 6.13
269 2761 1.512694 GGGCCAAGAATTTCAGCCG 59.487 57.895 4.39 0.00 44.82 5.52
272 2764 1.512694 GGCGGGCCAAGAATTTCAG 59.487 57.895 4.39 0.00 35.81 3.02
319 2811 1.979155 GGCCCTTCTTCCCTGCAAC 60.979 63.158 0.00 0.00 0.00 4.17
320 2812 2.162906 AGGCCCTTCTTCCCTGCAA 61.163 57.895 0.00 0.00 0.00 4.08
321 2813 2.532715 AGGCCCTTCTTCCCTGCA 60.533 61.111 0.00 0.00 0.00 4.41
322 2814 2.044551 CAGGCCCTTCTTCCCTGC 60.045 66.667 0.00 0.00 39.64 4.85
323 2815 2.044551 GCAGGCCCTTCTTCCCTG 60.045 66.667 0.00 1.66 46.95 4.45
324 2816 2.532715 TGCAGGCCCTTCTTCCCT 60.533 61.111 0.00 0.00 0.00 4.20
365 2857 1.669795 GCTGGGCTCGTTTCCAAAATG 60.670 52.381 0.00 0.00 31.97 2.32
408 2901 0.662672 AGATGAGATGCGATGCGACG 60.663 55.000 0.00 0.00 0.00 5.12
409 2902 1.059173 GAGATGAGATGCGATGCGAC 58.941 55.000 0.00 0.00 0.00 5.19
410 2903 0.670162 TGAGATGAGATGCGATGCGA 59.330 50.000 0.00 0.00 0.00 5.10
411 2904 1.654602 GATGAGATGAGATGCGATGCG 59.345 52.381 0.00 0.00 0.00 4.73
432 2925 0.681564 GAGAGAGACGAAGCAGGGGA 60.682 60.000 0.00 0.00 0.00 4.81
445 2938 3.885901 TCGAGAGAGAGAGAGAGAGAGAG 59.114 52.174 0.00 0.00 34.84 3.20
473 2966 1.677217 GCCATGCGAGAAAAGAGGAGT 60.677 52.381 0.00 0.00 0.00 3.85
477 2970 1.709147 CCGGCCATGCGAGAAAAGAG 61.709 60.000 2.24 0.00 0.00 2.85
500 3002 0.745468 ACGGATTAGCGAGGTCCTTC 59.255 55.000 0.00 0.00 0.00 3.46
563 3065 1.003573 CTGCCTAACCTCCCTCCCT 59.996 63.158 0.00 0.00 0.00 4.20
564 3066 2.073101 CCTGCCTAACCTCCCTCCC 61.073 68.421 0.00 0.00 0.00 4.30
565 3067 2.747443 GCCTGCCTAACCTCCCTCC 61.747 68.421 0.00 0.00 0.00 4.30
566 3068 1.348775 ATGCCTGCCTAACCTCCCTC 61.349 60.000 0.00 0.00 0.00 4.30
567 3069 1.308216 ATGCCTGCCTAACCTCCCT 60.308 57.895 0.00 0.00 0.00 4.20
568 3070 1.152881 CATGCCTGCCTAACCTCCC 60.153 63.158 0.00 0.00 0.00 4.30
569 3071 1.825622 GCATGCCTGCCTAACCTCC 60.826 63.158 6.36 0.00 42.88 4.30
570 3072 2.182842 CGCATGCCTGCCTAACCTC 61.183 63.158 13.15 0.00 46.07 3.85
571 3073 2.124570 CGCATGCCTGCCTAACCT 60.125 61.111 13.15 0.00 46.07 3.50
572 3074 2.438434 ACGCATGCCTGCCTAACC 60.438 61.111 13.15 0.00 46.07 2.85
573 3075 2.813179 CGACGCATGCCTGCCTAAC 61.813 63.158 13.15 0.00 46.07 2.34
574 3076 2.511373 CGACGCATGCCTGCCTAA 60.511 61.111 13.15 0.00 46.07 2.69
625 3127 1.380515 TTGGGAGGAGAGAGAGGCG 60.381 63.158 0.00 0.00 0.00 5.52
664 3166 4.154347 GTCAGAGCCAGCGGGAGG 62.154 72.222 7.23 0.00 35.59 4.30
721 3223 1.392589 GGACGATGGCCATTGAATGT 58.607 50.000 35.32 20.80 0.00 2.71
765 3596 1.414158 TGGCCCTGTCTATCTACAGC 58.586 55.000 0.00 0.00 44.56 4.40
792 3623 1.283613 GTCCACAGAGAGAGAGAGGGA 59.716 57.143 0.00 0.00 0.00 4.20
794 3625 1.005332 TGGTCCACAGAGAGAGAGAGG 59.995 57.143 0.00 0.00 0.00 3.69
944 3787 1.562783 GACTGGAGCTTGGAGGTAGT 58.437 55.000 0.00 0.00 0.00 2.73
988 3831 4.195334 CTTCATGGGGGAGGGCGG 62.195 72.222 0.00 0.00 0.00 6.13
989 3832 4.883354 GCTTCATGGGGGAGGGCG 62.883 72.222 0.00 0.00 0.00 6.13
990 3833 3.424105 AGCTTCATGGGGGAGGGC 61.424 66.667 0.00 0.00 0.00 5.19
993 3836 1.530771 CAGGAGCTTCATGGGGGAG 59.469 63.158 0.00 0.00 0.00 4.30
1029 3872 3.064900 AGTAGCAAAAGGAGAAGCAGG 57.935 47.619 0.00 0.00 0.00 4.85
1045 3894 0.489567 AGGCCCTGGGAGGATAGTAG 59.510 60.000 19.27 0.00 37.67 2.57
1046 3895 1.717077 CTAGGCCCTGGGAGGATAGTA 59.283 57.143 19.27 0.00 37.67 1.82
1047 3896 0.489567 CTAGGCCCTGGGAGGATAGT 59.510 60.000 19.27 0.00 37.67 2.12
1075 3924 2.967076 CACGCACGCACCTTGAGT 60.967 61.111 0.00 0.00 0.00 3.41
1076 3925 4.374702 GCACGCACGCACCTTGAG 62.375 66.667 0.00 0.00 0.00 3.02
1084 3935 2.568935 GAAGATCTTGGCACGCACGC 62.569 60.000 14.00 0.00 0.00 5.34
1108 3959 0.526662 GGTGTGGAGTAGTGGAGACG 59.473 60.000 0.00 0.00 0.00 4.18
1114 3965 2.126071 CGGCGGTGTGGAGTAGTG 60.126 66.667 0.00 0.00 0.00 2.74
1142 3993 1.480137 TCAGCTAGAGGCAGAGAAAGC 59.520 52.381 0.00 0.00 44.79 3.51
1178 4032 4.664864 CTGCAACAAAGCGCGCGA 62.665 61.111 37.18 8.12 37.31 5.87
1180 4034 3.248630 TACCTGCAACAAAGCGCGC 62.249 57.895 26.66 26.66 37.31 6.86
1181 4035 1.154413 CTACCTGCAACAAAGCGCG 60.154 57.895 0.00 0.00 37.31 6.86
1182 4036 0.166814 CTCTACCTGCAACAAAGCGC 59.833 55.000 0.00 0.00 37.31 5.92
1183 4037 0.798776 CCTCTACCTGCAACAAAGCG 59.201 55.000 0.00 0.00 37.31 4.68
1184 4038 1.168714 CCCTCTACCTGCAACAAAGC 58.831 55.000 0.00 0.00 0.00 3.51
1185 4039 1.168714 GCCCTCTACCTGCAACAAAG 58.831 55.000 0.00 0.00 0.00 2.77
1186 4040 0.251165 GGCCCTCTACCTGCAACAAA 60.251 55.000 0.00 0.00 0.00 2.83
1187 4041 1.378762 GGCCCTCTACCTGCAACAA 59.621 57.895 0.00 0.00 0.00 2.83
1188 4042 2.954684 CGGCCCTCTACCTGCAACA 61.955 63.158 0.00 0.00 0.00 3.33
1189 4043 2.125106 CGGCCCTCTACCTGCAAC 60.125 66.667 0.00 0.00 0.00 4.17
1382 4245 3.322466 CCAAGGCTCCGGACAGGT 61.322 66.667 0.00 0.00 41.99 4.00
1407 4270 4.176851 GAGCCCTCGTCGTCGTCC 62.177 72.222 1.33 0.00 38.33 4.79
1443 4306 1.302192 GCACCGGCACTTCCAGTTA 60.302 57.895 0.00 0.00 40.72 2.24
1499 4362 1.664659 CATCTTCTTCTTGAGCAGGCG 59.335 52.381 0.00 0.00 0.00 5.52
1534 4408 0.033208 TGGGATGGACCAAAGATGCC 60.033 55.000 0.00 0.00 41.20 4.40
1544 4418 2.171237 TGTGATCTGTGATGGGATGGAC 59.829 50.000 0.00 0.00 0.00 4.02
1571 4445 2.427506 CCTCTCCCAACAACTTACAGC 58.572 52.381 0.00 0.00 0.00 4.40
1617 4491 2.615240 CCTTGCACAGCCATGTACAGTA 60.615 50.000 0.33 0.00 37.65 2.74
1618 4492 1.527034 CTTGCACAGCCATGTACAGT 58.473 50.000 0.33 0.00 37.65 3.55
1619 4493 0.806868 CCTTGCACAGCCATGTACAG 59.193 55.000 0.33 0.00 37.65 2.74
1620 4494 0.399833 TCCTTGCACAGCCATGTACA 59.600 50.000 0.00 0.00 37.65 2.90
1621 4495 1.089920 CTCCTTGCACAGCCATGTAC 58.910 55.000 0.00 0.00 37.65 2.90
1653 4527 6.394809 ACCTAAACAAACTGACCAAAACTTG 58.605 36.000 0.00 0.00 0.00 3.16
1694 4568 4.634012 TCATCCAGCATCATCATCATCA 57.366 40.909 0.00 0.00 0.00 3.07
1695 4569 5.186198 TGATCATCCAGCATCATCATCATC 58.814 41.667 0.00 0.00 0.00 2.92
1696 4570 5.179452 TGATCATCCAGCATCATCATCAT 57.821 39.130 0.00 0.00 0.00 2.45
1697 4571 4.634012 TGATCATCCAGCATCATCATCA 57.366 40.909 0.00 0.00 0.00 3.07
1698 4572 5.004448 AGTTGATCATCCAGCATCATCATC 58.996 41.667 0.00 0.00 0.00 2.92
1699 4573 4.986783 AGTTGATCATCCAGCATCATCAT 58.013 39.130 0.00 0.00 0.00 2.45
1700 4574 4.432980 AGTTGATCATCCAGCATCATCA 57.567 40.909 0.00 0.00 0.00 3.07
1701 4575 5.303165 TGTAGTTGATCATCCAGCATCATC 58.697 41.667 0.00 0.00 0.00 2.92
1702 4576 5.300411 TGTAGTTGATCATCCAGCATCAT 57.700 39.130 0.00 0.00 0.00 2.45
1711 4585 5.295950 ACTAGCAGCATGTAGTTGATCATC 58.704 41.667 0.00 0.00 39.31 2.92
1718 4592 6.414732 TCCAAATTACTAGCAGCATGTAGTT 58.585 36.000 0.00 0.00 39.31 2.24
1726 4600 3.610911 ACACCTCCAAATTACTAGCAGC 58.389 45.455 0.00 0.00 0.00 5.25
1736 4613 3.569701 CAGTTAGTGCAACACCTCCAAAT 59.430 43.478 0.00 0.00 41.43 2.32
1758 4638 2.278854 GGAACTCAGAAGCAGCTGATC 58.721 52.381 20.43 14.78 43.43 2.92
1780 4685 9.424319 CACCACCAAGCTTATAGTACAATATAG 57.576 37.037 0.00 0.00 0.00 1.31
1833 4768 2.924290 GTTAGTCCATCAGAGCGACAAC 59.076 50.000 0.00 2.64 0.00 3.32
1874 4809 4.035675 AGGTCGCGTATGTTTAGTAGTACC 59.964 45.833 5.77 0.13 0.00 3.34
1883 4818 2.482721 CCAGAAAAGGTCGCGTATGTTT 59.517 45.455 5.77 3.04 0.00 2.83
1884 4819 2.073816 CCAGAAAAGGTCGCGTATGTT 58.926 47.619 5.77 0.00 0.00 2.71
1890 4828 0.736325 ACGATCCAGAAAAGGTCGCG 60.736 55.000 0.00 0.00 36.40 5.87
1924 4862 6.280643 TCGATTTACATCCGACATTCATCTT 58.719 36.000 0.00 0.00 0.00 2.40
1925 4863 5.842907 TCGATTTACATCCGACATTCATCT 58.157 37.500 0.00 0.00 0.00 2.90
1926 4864 5.692204 ACTCGATTTACATCCGACATTCATC 59.308 40.000 0.00 0.00 0.00 2.92
1930 4868 6.737254 AAAACTCGATTTACATCCGACATT 57.263 33.333 0.00 0.00 0.00 2.71
1931 4869 8.433421 AATAAAACTCGATTTACATCCGACAT 57.567 30.769 0.00 0.00 0.00 3.06
1932 4870 7.837202 AATAAAACTCGATTTACATCCGACA 57.163 32.000 0.00 0.00 0.00 4.35
1933 4871 9.628983 GTAAATAAAACTCGATTTACATCCGAC 57.371 33.333 10.66 0.00 43.42 4.79
1934 4872 9.368674 TGTAAATAAAACTCGATTTACATCCGA 57.631 29.630 13.17 0.00 46.21 4.55
2080 5060 0.036306 TCGGAGGAAAAGACAAGGCC 59.964 55.000 0.00 0.00 0.00 5.19
2097 5077 1.459592 CTTACGGGCACAAGTTCTTCG 59.540 52.381 0.00 0.00 0.00 3.79
2121 5101 0.035152 TGGGAGCGAATCACATGCTT 60.035 50.000 0.00 0.00 36.00 3.91
2246 5227 3.247442 TCACACGATCAAACCACGTATC 58.753 45.455 0.00 0.00 38.47 2.24
2254 5235 6.367422 AGAAGAGAGAAATCACACGATCAAAC 59.633 38.462 0.00 0.00 0.00 2.93
2294 5275 5.506649 GGCAAAAACGAACTCCACTTCATTA 60.507 40.000 0.00 0.00 0.00 1.90
2301 5282 0.741915 TGGGCAAAAACGAACTCCAC 59.258 50.000 0.00 0.00 0.00 4.02
2307 5288 4.220382 AGATCATCAATGGGCAAAAACGAA 59.780 37.500 0.00 0.00 0.00 3.85
2316 5297 8.632679 TGTAAAAATAAGAGATCATCAATGGGC 58.367 33.333 0.00 0.00 0.00 5.36
2335 5319 9.787532 CTCACTGAACTTGAAATTCTGTAAAAA 57.212 29.630 0.00 0.00 36.45 1.94
2365 5349 0.727398 GAGGCAACATCCGCTTGTAC 59.273 55.000 0.00 0.00 41.41 2.90
2367 5351 0.613260 TAGAGGCAACATCCGCTTGT 59.387 50.000 0.00 0.00 37.45 3.16
2368 5352 1.959042 ATAGAGGCAACATCCGCTTG 58.041 50.000 0.00 0.00 37.45 4.01
2369 5353 2.548920 GCTATAGAGGCAACATCCGCTT 60.549 50.000 3.21 0.00 37.45 4.68
2370 5354 1.001406 GCTATAGAGGCAACATCCGCT 59.999 52.381 3.21 0.00 39.61 5.52
2371 5355 1.433534 GCTATAGAGGCAACATCCGC 58.566 55.000 3.21 0.00 41.41 5.54
2381 5365 2.968574 ACCACATCACAGGCTATAGAGG 59.031 50.000 3.21 0.00 0.00 3.69
2382 5366 3.386078 ACACCACATCACAGGCTATAGAG 59.614 47.826 3.21 0.00 0.00 2.43
2383 5367 3.132824 CACACCACATCACAGGCTATAGA 59.867 47.826 3.21 0.00 0.00 1.98
2384 5368 3.461061 CACACCACATCACAGGCTATAG 58.539 50.000 0.00 0.00 0.00 1.31
2385 5369 2.170397 CCACACCACATCACAGGCTATA 59.830 50.000 0.00 0.00 0.00 1.31
2386 5370 1.065199 CCACACCACATCACAGGCTAT 60.065 52.381 0.00 0.00 0.00 2.97
2387 5371 0.324614 CCACACCACATCACAGGCTA 59.675 55.000 0.00 0.00 0.00 3.93
2388 5372 1.073722 CCACACCACATCACAGGCT 59.926 57.895 0.00 0.00 0.00 4.58
2389 5373 1.228245 ACCACACCACATCACAGGC 60.228 57.895 0.00 0.00 0.00 4.85
2390 5374 0.179020 ACACCACACCACATCACAGG 60.179 55.000 0.00 0.00 0.00 4.00
2391 5375 0.946528 CACACCACACCACATCACAG 59.053 55.000 0.00 0.00 0.00 3.66
2392 5376 1.100463 GCACACCACACCACATCACA 61.100 55.000 0.00 0.00 0.00 3.58
2393 5377 1.100463 TGCACACCACACCACATCAC 61.100 55.000 0.00 0.00 0.00 3.06
2394 5378 0.178995 ATGCACACCACACCACATCA 60.179 50.000 0.00 0.00 0.00 3.07
2395 5379 0.241749 CATGCACACCACACCACATC 59.758 55.000 0.00 0.00 0.00 3.06
2396 5380 1.808531 GCATGCACACCACACCACAT 61.809 55.000 14.21 0.00 0.00 3.21
2397 5381 2.488403 GCATGCACACCACACCACA 61.488 57.895 14.21 0.00 0.00 4.17
2398 5382 1.808531 ATGCATGCACACCACACCAC 61.809 55.000 25.37 0.00 0.00 4.16
2399 5383 1.531128 ATGCATGCACACCACACCA 60.531 52.632 25.37 0.00 0.00 4.17
2400 5384 1.080366 CATGCATGCACACCACACC 60.080 57.895 25.37 0.00 0.00 4.16
2401 5385 1.080366 CCATGCATGCACACCACAC 60.080 57.895 25.37 0.00 0.00 3.82
2402 5386 2.933401 GCCATGCATGCACACCACA 61.933 57.895 25.37 0.00 0.00 4.17
2403 5387 1.314534 TAGCCATGCATGCACACCAC 61.315 55.000 25.37 11.10 0.00 4.16
2404 5388 0.611340 TTAGCCATGCATGCACACCA 60.611 50.000 25.37 4.52 0.00 4.17
2405 5389 0.179129 GTTAGCCATGCATGCACACC 60.179 55.000 25.37 13.66 0.00 4.16
2406 5390 0.813184 AGTTAGCCATGCATGCACAC 59.187 50.000 25.37 15.32 0.00 3.82
2407 5391 1.097232 GAGTTAGCCATGCATGCACA 58.903 50.000 25.37 0.00 0.00 4.57
2408 5392 1.097232 TGAGTTAGCCATGCATGCAC 58.903 50.000 25.37 14.85 0.00 4.57
2409 5393 1.746787 CTTGAGTTAGCCATGCATGCA 59.253 47.619 25.04 25.04 0.00 3.96
2410 5394 1.535437 GCTTGAGTTAGCCATGCATGC 60.535 52.381 21.69 11.82 35.54 4.06
2411 5395 2.486951 GCTTGAGTTAGCCATGCATG 57.513 50.000 20.19 20.19 35.54 4.06
2457 5441 0.593128 GTTGAATGCAGACGCCAAGT 59.407 50.000 0.00 0.00 37.32 3.16
2459 5443 0.821301 TGGTTGAATGCAGACGCCAA 60.821 50.000 0.00 0.00 37.32 4.52
2460 5444 0.821301 TTGGTTGAATGCAGACGCCA 60.821 50.000 0.00 0.00 37.32 5.69
2461 5445 0.109597 CTTGGTTGAATGCAGACGCC 60.110 55.000 0.00 0.00 37.32 5.68
2462 5446 0.874390 TCTTGGTTGAATGCAGACGC 59.126 50.000 0.00 0.00 39.24 5.19
2463 5447 1.135859 GCTCTTGGTTGAATGCAGACG 60.136 52.381 0.00 0.00 0.00 4.18
2464 5448 1.200948 GGCTCTTGGTTGAATGCAGAC 59.799 52.381 0.00 0.00 0.00 3.51
2465 5449 1.538047 GGCTCTTGGTTGAATGCAGA 58.462 50.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.