Multiple sequence alignment - TraesCS4A01G256700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G256700 chr4A 100.000 5917 0 0 1 5917 569476449 569482365 0.000000e+00 10927.0
1 TraesCS4A01G256700 chr4A 100.000 2790 0 0 6172 8961 569482620 569485409 0.000000e+00 5153.0
2 TraesCS4A01G256700 chr4A 87.633 469 23 6 8407 8840 29093298 29093766 6.210000e-141 512.0
3 TraesCS4A01G256700 chr4A 86.853 464 33 4 8407 8842 703775633 703776096 2.250000e-135 494.0
4 TraesCS4A01G256700 chr4A 92.174 115 9 0 8847 8961 29093839 29093953 7.200000e-36 163.0
5 TraesCS4A01G256700 chr4A 88.696 115 13 0 8847 8961 465438622 465438508 3.370000e-29 141.0
6 TraesCS4A01G256700 chr4A 92.045 88 7 0 7765 7852 595055524 595055611 3.400000e-24 124.0
7 TraesCS4A01G256700 chr4A 96.364 55 1 1 6489 6542 103389816 103389762 1.240000e-13 89.8
8 TraesCS4A01G256700 chr4A 92.308 39 1 1 5695 5733 407642027 407642063 5.000000e-03 54.7
9 TraesCS4A01G256700 chr4B 95.008 4527 129 40 3 4483 48109014 48104539 0.000000e+00 7018.0
10 TraesCS4A01G256700 chr4B 92.952 681 24 3 7671 8327 48101533 48100853 0.000000e+00 970.0
11 TraesCS4A01G256700 chr4B 92.718 412 26 1 7264 7671 48102101 48101690 7.750000e-165 592.0
12 TraesCS4A01G256700 chr4B 87.805 328 24 12 6172 6489 48102902 48102581 3.950000e-98 370.0
13 TraesCS4A01G256700 chr4B 83.573 347 35 11 4476 4816 48104420 48104090 1.130000e-78 305.0
14 TraesCS4A01G256700 chr4B 86.008 243 25 2 5677 5910 48103159 48102917 1.490000e-62 252.0
15 TraesCS4A01G256700 chr4D 92.987 3864 152 53 123 3920 32947999 32944189 0.000000e+00 5524.0
16 TraesCS4A01G256700 chr4D 93.085 1692 94 16 6737 8409 32941095 32939408 0.000000e+00 2455.0
17 TraesCS4A01G256700 chr4D 94.147 1384 59 11 3867 5246 32944186 32942821 0.000000e+00 2087.0
18 TraesCS4A01G256700 chr4D 91.653 611 22 8 5304 5910 32942829 32942244 0.000000e+00 819.0
19 TraesCS4A01G256700 chr4D 88.889 468 23 5 8407 8846 138292439 138292905 4.730000e-152 549.0
20 TraesCS4A01G256700 chr4D 93.015 272 18 1 6218 6489 32941726 32941456 6.520000e-106 396.0
21 TraesCS4A01G256700 chr4D 90.196 255 18 6 6566 6814 32941453 32941200 8.680000e-85 326.0
22 TraesCS4A01G256700 chr4D 92.174 115 9 0 8847 8961 138292972 138293086 7.200000e-36 163.0
23 TraesCS4A01G256700 chr4D 88.430 121 13 1 7090 7209 400201886 400202006 2.610000e-30 145.0
24 TraesCS4A01G256700 chr5D 88.889 468 24 8 8407 8846 555083958 555083491 1.310000e-152 551.0
25 TraesCS4A01G256700 chr5D 90.435 115 10 1 8847 8961 555083424 555083311 5.600000e-32 150.0
26 TraesCS4A01G256700 chr5D 96.341 82 3 0 6733 6814 126570266 126570185 1.570000e-27 135.0
27 TraesCS4A01G256700 chr5D 90.909 99 9 0 7755 7853 478453786 478453884 5.640000e-27 134.0
28 TraesCS4A01G256700 chr5D 96.250 80 3 0 6735 6814 517850649 517850728 2.030000e-26 132.0
29 TraesCS4A01G256700 chr5D 100.000 28 0 0 5577 5604 41121038 41121065 1.600000e-02 52.8
30 TraesCS4A01G256700 chr3D 88.578 464 25 6 8407 8842 613438104 613438567 1.020000e-148 538.0
31 TraesCS4A01G256700 chr3D 94.118 85 5 0 6730 6814 6411268 6411352 7.300000e-26 130.0
32 TraesCS4A01G256700 chr6D 88.034 468 27 8 8407 8846 28439195 28439661 2.220000e-145 527.0
33 TraesCS4A01G256700 chr6D 86.111 468 34 8 8407 8845 412465842 412465377 8.140000e-130 475.0
34 TraesCS4A01G256700 chr6D 81.681 464 57 11 8410 8845 436678334 436677871 2.380000e-95 361.0
35 TraesCS4A01G256700 chr3A 87.607 468 30 8 8407 8846 340810858 340810391 1.330000e-142 518.0
36 TraesCS4A01G256700 chr3A 89.147 129 13 1 7085 7212 602017731 602017859 9.310000e-35 159.0
37 TraesCS4A01G256700 chr3A 89.565 115 12 0 8847 8961 340810324 340810210 7.250000e-31 147.0
38 TraesCS4A01G256700 chr3A 87.037 54 5 1 5680 5733 714293750 714293699 9.720000e-05 60.2
39 TraesCS4A01G256700 chr1A 87.554 466 28 7 8410 8846 522128726 522128262 6.210000e-141 512.0
40 TraesCS4A01G256700 chr1A 93.043 115 8 0 8847 8961 522128195 522128081 1.550000e-37 169.0
41 TraesCS4A01G256700 chr1A 86.047 129 16 2 7086 7212 430623816 430623944 4.360000e-28 137.0
42 TraesCS4A01G256700 chr1A 87.037 108 14 0 7775 7882 56923683 56923790 1.220000e-23 122.0
43 TraesCS4A01G256700 chr1A 92.308 39 1 1 5695 5733 152542919 152542955 5.000000e-03 54.7
44 TraesCS4A01G256700 chr6A 86.853 464 32 5 8407 8842 72955091 72955553 8.080000e-135 492.0
45 TraesCS4A01G256700 chr6A 87.692 130 13 2 7085 7212 118284357 118284229 2.020000e-31 148.0
46 TraesCS4A01G256700 chr6A 85.294 136 11 7 7081 7209 99819958 99820091 2.030000e-26 132.0
47 TraesCS4A01G256700 chr6A 94.444 54 2 1 6489 6542 161074589 161074537 2.070000e-11 82.4
48 TraesCS4A01G256700 chr2D 86.825 463 31 6 8407 8841 639695340 639694880 2.910000e-134 490.0
49 TraesCS4A01G256700 chr2D 80.603 464 62 11 8407 8842 635862214 635862677 5.180000e-87 333.0
50 TraesCS4A01G256700 chr2D 90.435 115 11 0 8847 8961 639694808 639694694 1.560000e-32 152.0
51 TraesCS4A01G256700 chr2D 85.938 128 17 1 7086 7212 204493680 204493553 1.570000e-27 135.0
52 TraesCS4A01G256700 chr2D 87.931 116 12 2 8847 8961 522621533 522621647 1.570000e-27 135.0
53 TraesCS4A01G256700 chrUn 85.439 467 40 8 8407 8845 345163 344697 2.280000e-125 460.0
54 TraesCS4A01G256700 chr1D 81.034 464 60 11 8407 8842 426409235 426409698 2.400000e-90 344.0
55 TraesCS4A01G256700 chr1D 84.496 129 18 2 7755 7882 57960562 57960689 9.450000e-25 126.0
56 TraesCS4A01G256700 chr7A 80.860 465 59 13 8407 8842 636827103 636827566 1.110000e-88 339.0
57 TraesCS4A01G256700 chr7A 89.474 114 12 0 7090 7203 735953941 735954054 2.610000e-30 145.0
58 TraesCS4A01G256700 chr7A 93.103 58 2 1 6487 6542 116616018 116615961 5.770000e-12 84.2
59 TraesCS4A01G256700 chr7A 89.394 66 4 3 6466 6529 612375717 612375653 7.460000e-11 80.5
60 TraesCS4A01G256700 chr7A 92.157 51 4 0 5554 5604 391906506 391906556 1.250000e-08 73.1
61 TraesCS4A01G256700 chr2A 80.172 464 64 11 8407 8842 261607710 261608173 1.120000e-83 322.0
62 TraesCS4A01G256700 chr7D 87.970 133 11 4 7082 7212 192371465 192371594 1.560000e-32 152.0
63 TraesCS4A01G256700 chr7D 95.294 85 3 1 6731 6814 334858167 334858083 5.640000e-27 134.0
64 TraesCS4A01G256700 chr7D 96.364 55 1 1 6490 6544 8879470 8879523 1.240000e-13 89.8
65 TraesCS4A01G256700 chr7D 94.118 51 3 0 5554 5604 353923305 353923355 2.680000e-10 78.7
66 TraesCS4A01G256700 chr7D 86.000 50 7 0 5686 5735 71339730 71339779 5.000000e-03 54.7
67 TraesCS4A01G256700 chr5A 88.696 115 13 0 8847 8961 605578760 605578874 3.370000e-29 141.0
68 TraesCS4A01G256700 chr5A 90.909 99 9 0 7755 7853 597504836 597504934 5.640000e-27 134.0
69 TraesCS4A01G256700 chr5A 87.179 117 13 2 5673 5788 314672103 314672218 2.030000e-26 132.0
70 TraesCS4A01G256700 chr5A 100.000 29 0 0 5705 5733 372662832 372662804 5.000000e-03 54.7
71 TraesCS4A01G256700 chr5B 96.341 82 3 0 6733 6814 139342383 139342302 1.570000e-27 135.0
72 TraesCS4A01G256700 chr5B 94.318 88 3 2 6737 6822 78729727 78729640 5.640000e-27 134.0
73 TraesCS4A01G256700 chr5B 90.909 99 9 0 7755 7853 586279806 586279904 5.640000e-27 134.0
74 TraesCS4A01G256700 chr5B 93.103 58 1 3 6485 6542 547396310 547396256 2.070000e-11 82.4
75 TraesCS4A01G256700 chr1B 85.271 129 17 2 7755 7882 93295780 93295907 2.030000e-26 132.0
76 TraesCS4A01G256700 chr1B 94.444 54 2 1 6489 6542 579608068 579608120 2.070000e-11 82.4
77 TraesCS4A01G256700 chr2B 90.426 94 8 1 6721 6814 367688132 367688040 1.220000e-23 122.0
78 TraesCS4A01G256700 chr2B 87.879 66 8 0 5554 5619 197682928 197682863 2.680000e-10 78.7
79 TraesCS4A01G256700 chr7B 94.545 55 2 1 6489 6543 608897493 608897440 5.770000e-12 84.2
80 TraesCS4A01G256700 chr7B 90.196 51 4 1 5554 5604 297400722 297400673 2.090000e-06 65.8
81 TraesCS4A01G256700 chr6B 89.062 64 5 2 6489 6550 702248436 702248499 2.680000e-10 78.7
82 TraesCS4A01G256700 chr3B 100.000 29 0 0 5705 5733 125082604 125082576 5.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G256700 chr4A 569476449 569485409 8960 False 8040.0 10927 100.000000 1 8961 2 chr4A.!!$F5 8960
1 TraesCS4A01G256700 chr4A 29093298 29093953 655 False 337.5 512 89.903500 8407 8961 2 chr4A.!!$F4 554
2 TraesCS4A01G256700 chr4B 48100853 48109014 8161 True 1584.5 7018 89.677333 3 8327 6 chr4B.!!$R1 8324
3 TraesCS4A01G256700 chr4D 32939408 32947999 8591 True 1934.5 5524 92.513833 123 8409 6 chr4D.!!$R1 8286
4 TraesCS4A01G256700 chr4D 138292439 138293086 647 False 356.0 549 90.531500 8407 8961 2 chr4D.!!$F2 554
5 TraesCS4A01G256700 chr5D 555083311 555083958 647 True 350.5 551 89.662000 8407 8961 2 chr5D.!!$R2 554
6 TraesCS4A01G256700 chr3A 340810210 340810858 648 True 332.5 518 88.586000 8407 8961 2 chr3A.!!$R2 554
7 TraesCS4A01G256700 chr1A 522128081 522128726 645 True 340.5 512 90.298500 8410 8961 2 chr1A.!!$R1 551
8 TraesCS4A01G256700 chr2D 639694694 639695340 646 True 321.0 490 88.630000 8407 8961 2 chr2D.!!$R2 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
695 732 1.815421 CAGCGCACCATCCTACACC 60.815 63.158 11.47 0.0 0.00 4.16 F
1583 1627 1.377333 GTGCTTAGCCTGGGTGGTC 60.377 63.158 9.02 0.0 38.35 4.02 F
2696 2754 0.039618 TGATGGAAGGAAACCCAGCC 59.960 55.000 0.00 0.0 38.01 4.85 F
2697 2755 0.039618 GATGGAAGGAAACCCAGCCA 59.960 55.000 0.00 0.0 35.67 4.75 F
2698 2756 0.040204 ATGGAAGGAAACCCAGCCAG 59.960 55.000 0.00 0.0 35.67 4.85 F
2736 2794 1.292085 TCTAGGGTTTTAGGGGGTGC 58.708 55.000 0.00 0.0 0.00 5.01 F
4745 5020 1.376466 GTGACTCCTGTGGCATGGT 59.624 57.895 8.90 0.0 0.00 3.55 F
6338 7007 0.111639 TTGGAAAAGCTTACGGGGCT 59.888 50.000 0.00 0.0 42.31 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1770 1818 1.410004 AGAACGAACAGGTCACCTCA 58.590 50.000 0.00 0.0 39.61 3.86 R
3094 3158 0.463654 GCCCTGGCATCATCGTGTTA 60.464 55.000 2.58 0.0 41.49 2.41 R
4530 4801 1.354031 TGGGAAGGCATGAAGCTTGTA 59.646 47.619 2.10 0.0 44.79 2.41 R
4640 4914 4.160252 AGCGGCAAATATGAAAAACCTCAT 59.840 37.500 1.45 0.0 39.41 2.90 R
4718 4993 2.354103 CCACAGGAGTCACGTCATCAAT 60.354 50.000 0.00 0.0 0.00 2.57 R
4867 5307 4.386652 CCAGAATGTGTTAAACAATGCTGC 59.613 41.667 0.00 0.0 43.61 5.25 R
6342 7011 0.109597 GGAAAATGCTCAGGTGTGCG 60.110 55.000 0.02 0.0 37.35 5.34 R
8043 9113 0.391661 ACTAGCTTCGGTCGTCGGTA 60.392 55.000 0.00 0.0 39.77 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 109 8.524267 GTCATGTATTCGCATGTATAAGTATCG 58.476 37.037 6.04 0.00 44.68 2.92
147 150 9.065798 TCAAGTTTGATGATGTTCTTGTTATGA 57.934 29.630 0.00 0.00 35.35 2.15
153 156 4.910195 TGATGTTCTTGTTATGAGCCAGT 58.090 39.130 0.00 0.00 0.00 4.00
171 174 4.927425 GCCAGTGAGTTCAAGTACGATTAA 59.073 41.667 0.00 0.00 0.00 1.40
267 283 2.378547 TGAGGCCTCCTTTGGTTTGTAT 59.621 45.455 29.95 0.00 31.76 2.29
269 285 2.110011 AGGCCTCCTTTGGTTTGTATGT 59.890 45.455 0.00 0.00 0.00 2.29
320 337 4.502431 CGTTTGGAGCCCTTTGGTTTTTAT 60.502 41.667 0.00 0.00 0.00 1.40
330 347 7.607607 AGCCCTTTGGTTTTTATGAATGAATTC 59.392 33.333 0.00 0.00 37.31 2.17
347 366 9.141400 GAATGAATTCATATTCCTACGTAGGAC 57.859 37.037 38.03 24.66 43.02 3.85
373 392 9.709495 CAGAAATCCATCCTTCACATTTTAAAA 57.291 29.630 2.51 2.51 0.00 1.52
376 395 9.710900 AAATCCATCCTTCACATTTTAAAAGAC 57.289 29.630 6.79 0.00 0.00 3.01
485 504 8.296000 AGATACATTCATCTCACTTCGTATGAG 58.704 37.037 6.91 6.91 44.22 2.90
579 616 3.382832 AGCTTCGTCTCCACCGGG 61.383 66.667 6.32 0.00 0.00 5.73
695 732 1.815421 CAGCGCACCATCCTACACC 60.815 63.158 11.47 0.00 0.00 4.16
722 759 3.244596 TGTCTCTCTCTCCAAAGTCGAGA 60.245 47.826 0.00 0.00 35.14 4.04
923 961 2.303022 TCAAGCTCAATCCGTCTCCTTT 59.697 45.455 0.00 0.00 0.00 3.11
1371 1412 3.148279 CTCCTCGCCGCCTACCTT 61.148 66.667 0.00 0.00 0.00 3.50
1583 1627 1.377333 GTGCTTAGCCTGGGTGGTC 60.377 63.158 9.02 0.00 38.35 4.02
1770 1818 5.017490 AGGTTGTGTAGCTAGTACTCACAT 58.983 41.667 13.33 4.46 38.50 3.21
2020 2072 1.289160 ATCCATCCATCCATACCCCG 58.711 55.000 0.00 0.00 0.00 5.73
2038 2090 1.202110 CCGTCTTGCTGCTTGCTATTG 60.202 52.381 0.00 0.00 43.37 1.90
2078 2130 3.645212 TCATCTGCTTCTCCCTATTCTGG 59.355 47.826 0.00 0.00 0.00 3.86
2115 2167 7.929159 TCTTCTTGCGCATCATAATTTATTGA 58.071 30.769 12.75 0.00 0.00 2.57
2116 2168 7.857389 TCTTCTTGCGCATCATAATTTATTGAC 59.143 33.333 12.75 0.00 0.00 3.18
2181 2234 9.857957 GGTCCGTAAAAACAATTCCATAATAAA 57.142 29.630 0.00 0.00 0.00 1.40
2262 2315 1.141019 GCGCACGAATGGGTAGAGA 59.859 57.895 0.30 0.00 40.83 3.10
2265 2318 1.674441 CGCACGAATGGGTAGAGAGTA 59.326 52.381 0.00 0.00 34.13 2.59
2382 2435 0.176680 CCTGAAGGAGCATGCGTACT 59.823 55.000 13.01 9.02 37.39 2.73
2432 2485 5.327732 TGGATCTTTTCTTCTGCTGGAAAT 58.672 37.500 0.00 0.00 33.07 2.17
2459 2512 1.971357 TCCTCTCCTCTCCAAACACAC 59.029 52.381 0.00 0.00 0.00 3.82
2460 2513 1.694150 CCTCTCCTCTCCAAACACACA 59.306 52.381 0.00 0.00 0.00 3.72
2559 2616 4.697514 TGATTGATTTCCTCCAGATCGAC 58.302 43.478 0.00 0.00 0.00 4.20
2670 2728 3.759581 TCTTGCTTCAGCCATCTTTTCT 58.240 40.909 0.00 0.00 41.18 2.52
2694 2752 1.272092 TGCTGATGGAAGGAAACCCAG 60.272 52.381 0.00 0.00 35.67 4.45
2695 2753 1.467920 CTGATGGAAGGAAACCCAGC 58.532 55.000 0.00 0.00 39.17 4.85
2696 2754 0.039618 TGATGGAAGGAAACCCAGCC 59.960 55.000 0.00 0.00 38.01 4.85
2697 2755 0.039618 GATGGAAGGAAACCCAGCCA 59.960 55.000 0.00 0.00 35.67 4.75
2698 2756 0.040204 ATGGAAGGAAACCCAGCCAG 59.960 55.000 0.00 0.00 35.67 4.85
2699 2757 1.304464 GGAAGGAAACCCAGCCAGG 60.304 63.158 0.00 0.00 37.03 4.45
2700 2758 1.979155 GAAGGAAACCCAGCCAGGC 60.979 63.158 1.84 1.84 35.39 4.85
2701 2759 2.713531 GAAGGAAACCCAGCCAGGCA 62.714 60.000 15.80 0.00 35.39 4.75
2702 2760 2.677875 GGAAACCCAGCCAGGCAG 60.678 66.667 15.80 5.28 35.39 4.85
2728 2786 5.280521 CCAGCCTTCTTCTTCTAGGGTTTTA 60.281 44.000 0.00 0.00 37.67 1.52
2736 2794 1.292085 TCTAGGGTTTTAGGGGGTGC 58.708 55.000 0.00 0.00 0.00 5.01
2804 2862 2.561419 TGTCAGTGGAGCAAGTACTACC 59.439 50.000 0.00 0.00 0.00 3.18
2809 2867 4.402793 CAGTGGAGCAAGTACTACCTGTAT 59.597 45.833 0.00 0.00 33.23 2.29
2834 2892 4.136796 ACATGCATGTGTAGTGAGTGTTT 58.863 39.130 30.92 0.90 40.03 2.83
2835 2893 5.304778 ACATGCATGTGTAGTGAGTGTTTA 58.695 37.500 30.92 0.00 40.03 2.01
2836 2894 5.179368 ACATGCATGTGTAGTGAGTGTTTAC 59.821 40.000 30.92 0.00 40.03 2.01
2837 2895 4.956085 TGCATGTGTAGTGAGTGTTTACT 58.044 39.130 0.00 0.00 40.66 2.24
2838 2896 4.749598 TGCATGTGTAGTGAGTGTTTACTG 59.250 41.667 0.00 0.00 37.25 2.74
2839 2897 4.750098 GCATGTGTAGTGAGTGTTTACTGT 59.250 41.667 0.00 0.00 37.25 3.55
2840 2898 5.333339 GCATGTGTAGTGAGTGTTTACTGTG 60.333 44.000 0.00 0.00 37.25 3.66
2841 2899 5.333299 TGTGTAGTGAGTGTTTACTGTGT 57.667 39.130 0.00 0.00 37.25 3.72
2842 2900 6.453926 TGTGTAGTGAGTGTTTACTGTGTA 57.546 37.500 0.00 0.00 37.25 2.90
2843 2901 6.500910 TGTGTAGTGAGTGTTTACTGTGTAG 58.499 40.000 0.00 0.00 37.25 2.74
2851 2915 6.943146 TGAGTGTTTACTGTGTAGAGAGAGAT 59.057 38.462 0.00 0.00 37.25 2.75
2951 3015 2.686915 CTCCCTCAAGAAATCCATGCAC 59.313 50.000 0.00 0.00 0.00 4.57
2955 3019 4.467769 CCTCAAGAAATCCATGCACCTAT 58.532 43.478 0.00 0.00 0.00 2.57
3013 3077 1.971481 TCCAGATGTACATGCATGCC 58.029 50.000 26.53 17.21 0.00 4.40
3028 3092 2.093235 GCATGCCTAGATCATAGGGTCC 60.093 54.545 6.36 4.80 35.29 4.46
3094 3158 2.153401 TACAGGGTGTGCCAAGGCT 61.153 57.895 12.96 0.00 42.51 4.58
3153 3217 1.486726 GAGGCTATAGTGGCAACTGGT 59.513 52.381 3.21 0.00 37.19 4.00
3154 3218 2.698797 GAGGCTATAGTGGCAACTGGTA 59.301 50.000 3.21 0.00 37.19 3.25
3155 3219 2.434702 AGGCTATAGTGGCAACTGGTAC 59.565 50.000 3.21 0.00 37.19 3.34
3202 3268 2.436109 GCCCAGGGCTTTCACTCA 59.564 61.111 24.99 0.00 46.69 3.41
3635 3709 6.127563 CCTTGGCAGCAATATTATATGCATGA 60.128 38.462 10.16 0.00 44.95 3.07
3639 3713 7.229907 TGGCAGCAATATTATATGCATGATAGG 59.770 37.037 10.16 3.73 44.95 2.57
3705 3796 4.083003 CGACAGCCTTATCTATGGTCTCTC 60.083 50.000 0.00 0.00 0.00 3.20
3706 3797 5.073437 ACAGCCTTATCTATGGTCTCTCT 57.927 43.478 0.00 0.00 0.00 3.10
3824 3920 4.573900 TCTCCTCAGCTTCAATTGTTCTC 58.426 43.478 5.13 0.00 0.00 2.87
3896 4038 7.484140 ACATGTGTTCTCCTTTCTTTTCTTTC 58.516 34.615 0.00 0.00 0.00 2.62
3920 4062 7.287061 TCCTTTTCAGTGTTTCCAAGAGAATA 58.713 34.615 0.00 0.00 33.44 1.75
3980 4122 9.950680 AATGTAGTTTTCTAACATCACAAGTTG 57.049 29.630 0.00 0.00 36.70 3.16
4080 4222 7.664082 TTTTTGCTCATCAGAAAACAACAAA 57.336 28.000 0.00 0.00 25.22 2.83
4297 4440 3.890756 TGAGTTTGCATTGGAATGTCACT 59.109 39.130 1.49 0.00 38.65 3.41
4410 4553 9.708222 CGTTAACAAAATCCTTCAGATAATCAG 57.292 33.333 6.39 0.00 33.66 2.90
4530 4801 4.518970 TCATTTGCTTCCGTTCTTAGCTTT 59.481 37.500 0.00 0.00 35.93 3.51
4593 4867 2.154462 GTTCTGTACAGCACATGCCTT 58.846 47.619 19.08 0.00 43.38 4.35
4601 4875 4.906065 ACAGCACATGCCTTGTTATATG 57.094 40.909 0.00 0.00 43.38 1.78
4660 4934 7.042523 GCATGTATGAGGTTTTTCATATTTGCC 60.043 37.037 15.12 0.00 40.91 4.52
4672 4947 4.732784 TCATATTTGCCGCTTCAGTTTTC 58.267 39.130 0.00 0.00 0.00 2.29
4704 4979 9.120538 TGAAAAGCTGGGTTATTTGATATACTC 57.879 33.333 0.00 0.00 0.00 2.59
4745 5020 1.376466 GTGACTCCTGTGGCATGGT 59.624 57.895 8.90 0.00 0.00 3.55
4758 5033 3.196685 GTGGCATGGTTTAATTTAGGGCA 59.803 43.478 0.00 0.00 0.00 5.36
4868 5308 9.196552 AGCAAACAATTCTATTTAACTTTCAGC 57.803 29.630 0.00 0.00 0.00 4.26
4876 5316 7.452880 TCTATTTAACTTTCAGCAGCATTGT 57.547 32.000 0.00 0.00 0.00 2.71
4899 5339 6.183360 TGTTTAACACATTCTGGCACAAGATT 60.183 34.615 0.00 0.00 38.70 2.40
4928 5368 9.717942 ATCAATCCTCTTGAACTATATTACTGC 57.282 33.333 0.00 0.00 31.55 4.40
5083 5524 7.986553 AAATAATACCCATGATTTTCACCCA 57.013 32.000 0.00 0.00 0.00 4.51
5087 5528 1.273211 CCCATGATTTTCACCCACCCT 60.273 52.381 0.00 0.00 0.00 4.34
5088 5529 2.024464 CCCATGATTTTCACCCACCCTA 60.024 50.000 0.00 0.00 0.00 3.53
5089 5530 3.023832 CCATGATTTTCACCCACCCTAC 58.976 50.000 0.00 0.00 0.00 3.18
5090 5531 2.483014 TGATTTTCACCCACCCTACG 57.517 50.000 0.00 0.00 0.00 3.51
5110 5551 6.639686 CCTACGTACGCATCTTATTTGTACAT 59.360 38.462 16.72 0.00 36.15 2.29
5177 5618 6.601613 TCCATTTCTTTTTAGCATACCATCGT 59.398 34.615 0.00 0.00 0.00 3.73
5242 5683 7.261325 CAGTATAGGTACCATATGCATCAGAC 58.739 42.308 15.94 3.13 0.00 3.51
5245 5686 5.157940 AGGTACCATATGCATCAGACATC 57.842 43.478 15.94 0.00 0.00 3.06
5248 5689 4.548451 ACCATATGCATCAGACATCGAT 57.452 40.909 0.19 0.00 0.00 3.59
5256 5697 3.650139 CATCAGACATCGATGCATCTCA 58.350 45.455 25.11 8.68 34.32 3.27
5258 5699 3.451526 TCAGACATCGATGCATCTCAAC 58.548 45.455 25.11 11.33 0.00 3.18
5259 5700 3.131755 TCAGACATCGATGCATCTCAACT 59.868 43.478 25.11 13.19 0.00 3.16
5297 5739 6.969828 AAGTTGCTTATCTGTAGTACAAGC 57.030 37.500 14.99 14.99 41.51 4.01
5305 5748 5.950544 ATCTGTAGTACAAGCAATACCCA 57.049 39.130 4.21 0.00 0.00 4.51
5320 5763 5.221303 GCAATACCCATGCATCAACATAACT 60.221 40.000 0.00 0.00 43.29 2.24
5360 5803 9.855021 AAATAACATTACTAACAACATTGCCTC 57.145 29.630 0.00 0.00 0.00 4.70
5361 5804 6.892658 AACATTACTAACAACATTGCCTCA 57.107 33.333 0.00 0.00 0.00 3.86
5362 5805 7.466746 AACATTACTAACAACATTGCCTCAT 57.533 32.000 0.00 0.00 0.00 2.90
5363 5806 7.088589 ACATTACTAACAACATTGCCTCATC 57.911 36.000 0.00 0.00 0.00 2.92
5364 5807 5.794687 TTACTAACAACATTGCCTCATCG 57.205 39.130 0.00 0.00 0.00 3.84
5365 5808 3.674997 ACTAACAACATTGCCTCATCGT 58.325 40.909 0.00 0.00 0.00 3.73
5366 5809 4.827692 ACTAACAACATTGCCTCATCGTA 58.172 39.130 0.00 0.00 0.00 3.43
5367 5810 5.242434 ACTAACAACATTGCCTCATCGTAA 58.758 37.500 0.00 0.00 0.00 3.18
5368 5811 4.685169 AACAACATTGCCTCATCGTAAG 57.315 40.909 0.00 0.00 0.00 2.34
5369 5812 3.009723 ACAACATTGCCTCATCGTAAGG 58.990 45.455 0.00 0.00 36.95 2.69
5370 5813 3.009723 CAACATTGCCTCATCGTAAGGT 58.990 45.455 3.19 0.00 36.21 3.50
5424 5867 9.942850 TGCACATGTACTATATTTGCACTATAT 57.057 29.630 0.00 0.00 36.59 0.86
5672 6115 8.208718 TCGTATGGAAATATATGCCATAAAGC 57.791 34.615 20.78 12.56 43.94 3.51
5743 6190 6.114767 ACTTGGTCAAACTTAAACGAGGTTA 58.885 36.000 0.00 0.00 0.00 2.85
5781 6229 8.243961 TCCAGAACTTCCATTATTTTGAAACA 57.756 30.769 0.00 0.00 0.00 2.83
5818 6274 8.025445 GTCAAAGTTCATTCAATATCTGTGCTT 58.975 33.333 0.00 0.00 0.00 3.91
5820 6276 9.282247 CAAAGTTCATTCAATATCTGTGCTTAC 57.718 33.333 0.00 0.00 0.00 2.34
5844 6300 5.744345 CGAAGTATCAACTATCACTGGACAC 59.256 44.000 0.00 0.00 33.75 3.67
5910 6366 8.685427 TGATCCACATTTGACAAACTATTATGG 58.315 33.333 1.94 5.40 0.00 2.74
5911 6367 7.403312 TCCACATTTGACAAACTATTATGGG 57.597 36.000 1.94 0.00 0.00 4.00
5912 6368 6.379703 TCCACATTTGACAAACTATTATGGGG 59.620 38.462 10.69 10.69 36.62 4.96
5915 6371 8.188139 CACATTTGACAAACTATTATGGGGTAC 58.812 37.037 1.94 0.00 0.00 3.34
6234 6900 9.561069 ACTTACTAATACATAGCTCCAAAATGG 57.439 33.333 0.00 0.00 35.30 3.16
6240 6906 4.917385 ACATAGCTCCAAAATGGTGTACA 58.083 39.130 0.00 0.00 39.03 2.90
6313 6982 7.605410 TTGAACGCTTTATAAAGGAACTAGG 57.395 36.000 23.37 0.65 38.49 3.02
6329 6998 7.010771 AGGAACTAGGTTTATTTGGAAAAGCT 58.989 34.615 5.70 5.70 44.43 3.74
6338 7007 0.111639 TTGGAAAAGCTTACGGGGCT 59.888 50.000 0.00 0.00 42.31 5.19
6353 7022 1.298859 GGGCTTTACGCACACCTGAG 61.299 60.000 0.00 0.00 43.29 3.35
6409 7078 0.849094 TTCCATTGCAGGGTAGGGGT 60.849 55.000 6.40 0.00 0.00 4.95
6454 7123 5.296780 CCCAATCATGTATAAGGTGTCACAC 59.703 44.000 0.00 0.00 0.00 3.82
6456 7125 6.374053 CCAATCATGTATAAGGTGTCACACAA 59.626 38.462 10.85 0.00 35.86 3.33
6474 7143 8.293867 GTCACACAAAAACCAGCTTTATATGTA 58.706 33.333 0.00 0.00 0.00 2.29
6475 7144 8.851145 TCACACAAAAACCAGCTTTATATGTAA 58.149 29.630 0.00 0.00 0.00 2.41
6489 7158 9.487790 GCTTTATATGTAATGCTTCTCTCTTCT 57.512 33.333 11.38 0.00 37.74 2.85
6494 7163 6.458232 TGTAATGCTTCTCTCTTCTACTCC 57.542 41.667 0.00 0.00 0.00 3.85
6495 7164 5.361285 TGTAATGCTTCTCTCTTCTACTCCC 59.639 44.000 0.00 0.00 0.00 4.30
6496 7165 3.748645 TGCTTCTCTCTTCTACTCCCT 57.251 47.619 0.00 0.00 0.00 4.20
6497 7166 3.626930 TGCTTCTCTCTTCTACTCCCTC 58.373 50.000 0.00 0.00 0.00 4.30
6498 7167 2.956333 GCTTCTCTCTTCTACTCCCTCC 59.044 54.545 0.00 0.00 0.00 4.30
6499 7168 3.211045 CTTCTCTCTTCTACTCCCTCCG 58.789 54.545 0.00 0.00 0.00 4.63
6500 7169 2.198336 TCTCTCTTCTACTCCCTCCGT 58.802 52.381 0.00 0.00 0.00 4.69
6501 7170 3.382278 TCTCTCTTCTACTCCCTCCGTA 58.618 50.000 0.00 0.00 0.00 4.02
6502 7171 3.779183 TCTCTCTTCTACTCCCTCCGTAA 59.221 47.826 0.00 0.00 0.00 3.18
6503 7172 4.226846 TCTCTCTTCTACTCCCTCCGTAAA 59.773 45.833 0.00 0.00 0.00 2.01
6504 7173 4.525024 TCTCTTCTACTCCCTCCGTAAAG 58.475 47.826 0.00 0.00 0.00 1.85
6505 7174 4.226846 TCTCTTCTACTCCCTCCGTAAAGA 59.773 45.833 0.00 0.00 0.00 2.52
6506 7175 4.927049 TCTTCTACTCCCTCCGTAAAGAA 58.073 43.478 0.00 0.00 0.00 2.52
6507 7176 5.327732 TCTTCTACTCCCTCCGTAAAGAAA 58.672 41.667 0.00 0.00 0.00 2.52
6508 7177 5.956563 TCTTCTACTCCCTCCGTAAAGAAAT 59.043 40.000 0.00 0.00 0.00 2.17
6509 7178 7.121382 TCTTCTACTCCCTCCGTAAAGAAATA 58.879 38.462 0.00 0.00 0.00 1.40
6510 7179 7.783596 TCTTCTACTCCCTCCGTAAAGAAATAT 59.216 37.037 0.00 0.00 0.00 1.28
6511 7180 9.075678 CTTCTACTCCCTCCGTAAAGAAATATA 57.924 37.037 0.00 0.00 0.00 0.86
6512 7181 9.425248 TTCTACTCCCTCCGTAAAGAAATATAA 57.575 33.333 0.00 0.00 0.00 0.98
6513 7182 9.075678 TCTACTCCCTCCGTAAAGAAATATAAG 57.924 37.037 0.00 0.00 0.00 1.73
6514 7183 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
6515 7184 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
6516 7185 7.564292 ACTCCCTCCGTAAAGAAATATAAGAGT 59.436 37.037 0.00 0.00 0.00 3.24
6517 7186 7.723324 TCCCTCCGTAAAGAAATATAAGAGTG 58.277 38.462 0.00 0.00 0.00 3.51
6518 7187 7.343833 TCCCTCCGTAAAGAAATATAAGAGTGT 59.656 37.037 0.00 0.00 0.00 3.55
6519 7188 7.985752 CCCTCCGTAAAGAAATATAAGAGTGTT 59.014 37.037 0.00 0.00 0.00 3.32
6520 7189 9.379791 CCTCCGTAAAGAAATATAAGAGTGTTT 57.620 33.333 0.00 0.00 0.00 2.83
6534 7203 6.585695 AAGAGTGTTTAGATCACTTACGGA 57.414 37.500 0.00 0.00 44.68 4.69
6535 7204 6.197364 AGAGTGTTTAGATCACTTACGGAG 57.803 41.667 0.00 0.00 44.68 4.63
6536 7205 5.125739 AGAGTGTTTAGATCACTTACGGAGG 59.874 44.000 0.00 0.00 44.68 4.30
6537 7206 4.159879 AGTGTTTAGATCACTTACGGAGGG 59.840 45.833 0.00 0.00 42.50 4.30
6538 7207 4.159135 GTGTTTAGATCACTTACGGAGGGA 59.841 45.833 0.00 0.00 43.35 4.20
6539 7208 4.401519 TGTTTAGATCACTTACGGAGGGAG 59.598 45.833 0.00 0.00 42.21 4.30
6540 7209 2.830651 AGATCACTTACGGAGGGAGT 57.169 50.000 0.00 0.00 42.21 3.85
6547 7216 3.377798 CACTTACGGAGGGAGTAACTCTC 59.622 52.174 0.00 0.00 44.82 3.20
6558 7227 5.183522 AGGGAGTAACTCTCTTTACTGAACG 59.816 44.000 0.32 0.00 38.27 3.95
6628 7300 5.192927 GGATCAATCCACACCACATCTTAA 58.807 41.667 4.09 0.00 46.38 1.85
6702 7387 8.879759 CAAGCATATTACCAACTTATATACCGG 58.120 37.037 0.00 0.00 0.00 5.28
6703 7388 7.562135 AGCATATTACCAACTTATATACCGGG 58.438 38.462 6.32 0.00 0.00 5.73
6752 7619 6.825213 TCTTCATACTGTTAAGCTTCATGCAT 59.175 34.615 0.00 0.00 45.94 3.96
6760 7627 3.515330 AAGCTTCATGCATTAGCCAAC 57.485 42.857 21.24 0.00 45.94 3.77
6773 7640 0.102300 AGCCAACGCAACCAAAAGTC 59.898 50.000 0.00 0.00 37.52 3.01
6883 7750 5.937975 ATGTAACTTGCTAATTGCCCATT 57.062 34.783 0.00 0.00 42.00 3.16
6902 7769 6.016024 GCCCATTACTGAATTCATGCAAGATA 60.016 38.462 8.96 0.00 0.00 1.98
6910 7777 7.395489 ACTGAATTCATGCAAGATAAAGTTCCT 59.605 33.333 8.96 0.00 0.00 3.36
6934 7801 5.063204 TGTTATTTCACTTCTCACAGGTGG 58.937 41.667 0.00 0.00 0.00 4.61
6939 7806 1.688735 CACTTCTCACAGGTGGAGTGA 59.311 52.381 18.14 0.00 43.23 3.41
6943 7810 2.796557 TCTCACAGGTGGAGTGACTAG 58.203 52.381 0.00 0.00 40.80 2.57
6981 7848 7.032580 CACTAAATCGTGAAGACATTCTCTCT 58.967 38.462 0.00 0.00 37.06 3.10
6989 7856 6.848296 CGTGAAGACATTCTCTCTTTTTGTTC 59.152 38.462 0.00 0.00 36.33 3.18
7010 7879 9.522804 TTGTTCGAAACTGCTATTTGTTTTATT 57.477 25.926 0.00 0.00 36.64 1.40
7084 7953 3.670625 TCTGGTTTCATCCCTTGTTACG 58.329 45.455 0.00 0.00 0.00 3.18
7095 7964 1.619827 CCTTGTTACGTACACCCTCCA 59.380 52.381 0.00 0.00 36.21 3.86
7099 7968 2.898612 TGTTACGTACACCCTCCATTCA 59.101 45.455 0.00 0.00 0.00 2.57
7101 7970 0.245539 ACGTACACCCTCCATTCACG 59.754 55.000 0.00 0.00 0.00 4.35
7147 8016 9.733556 TTTCGTTAATTGGATGTATATAGGCAT 57.266 29.630 0.00 0.00 0.00 4.40
7148 8017 8.716646 TCGTTAATTGGATGTATATAGGCATG 57.283 34.615 0.00 0.00 0.00 4.06
7168 8037 5.005299 GCATGTTTTAGTGTGTTTGTTCACC 59.995 40.000 0.00 0.00 37.51 4.02
7179 8079 4.097892 GTGTTTGTTCACCCATTTCAGTCT 59.902 41.667 0.00 0.00 32.81 3.24
7189 8089 5.582269 CACCCATTTCAGTCTGTATGTAGTG 59.418 44.000 0.00 10.25 0.00 2.74
7194 8094 7.658982 CCATTTCAGTCTGTATGTAGTGCATAT 59.341 37.037 4.13 0.00 41.58 1.78
7293 8193 5.994250 ACATAAGCTGGATGTGTCTACAAT 58.006 37.500 12.53 0.00 40.84 2.71
7567 8471 5.278218 GCTGTCAAAGAAGAAGAAGAAAGGG 60.278 44.000 0.00 0.00 0.00 3.95
7664 8568 7.148540 CGGTATACAAATCTTCCAAGTTTCGAA 60.149 37.037 5.01 0.00 0.00 3.71
7669 8730 8.970691 ACAAATCTTCCAAGTTTCGAAATATG 57.029 30.769 14.69 15.00 0.00 1.78
7740 8803 7.408123 TCTCTTCTCGATATAAACTTGACGAC 58.592 38.462 0.00 0.00 0.00 4.34
7752 8816 2.146342 CTTGACGACTTGCATTGTCCT 58.854 47.619 12.74 3.93 32.67 3.85
7963 9027 1.751924 CTCTACAGGTTCGGCTAGCTT 59.248 52.381 15.72 0.00 0.00 3.74
7984 9048 1.324005 GCCAGGCCTCGTCTCTTACT 61.324 60.000 0.00 0.00 0.00 2.24
8000 9070 0.470456 TACTGGTGACCTTGGTCGGT 60.470 55.000 14.24 12.00 40.80 4.69
8354 9447 3.790089 AAGGGACGATCCAAAGTTCTT 57.210 42.857 6.41 0.00 38.64 2.52
8356 9449 4.903045 AGGGACGATCCAAAGTTCTTTA 57.097 40.909 6.41 0.00 38.64 1.85
8362 9455 6.183309 ACGATCCAAAGTTCTTTATGCTTC 57.817 37.500 0.00 0.00 0.00 3.86
8372 9465 5.473504 AGTTCTTTATGCTTCAATCGTTGGT 59.526 36.000 0.00 0.00 0.00 3.67
8373 9466 5.957842 TCTTTATGCTTCAATCGTTGGTT 57.042 34.783 0.00 0.00 0.00 3.67
8379 9472 4.109050 TGCTTCAATCGTTGGTTGTTTTC 58.891 39.130 0.00 0.00 0.00 2.29
8385 9478 6.262601 TCAATCGTTGGTTGTTTTCTTCTTC 58.737 36.000 0.00 0.00 0.00 2.87
8420 9514 4.606210 AGTTTGGTGTCCTTAACTGGTTT 58.394 39.130 0.00 0.00 31.59 3.27
8470 9564 5.046376 GGTGAGATCAAAATTGGATGGGTTT 60.046 40.000 0.00 0.00 0.00 3.27
8482 9576 2.092914 GGATGGGTTTCGATGGTCTCTT 60.093 50.000 0.00 0.00 0.00 2.85
8499 9593 1.897133 TCTTGTAGCGGTGTATGGTGT 59.103 47.619 0.00 0.00 0.00 4.16
8540 9634 3.260884 ACCAGATTTCTTAGCCGACTTGA 59.739 43.478 0.00 0.00 0.00 3.02
8579 9673 3.280295 GAGACTCTACCGATCCTTGTCA 58.720 50.000 0.00 0.00 0.00 3.58
8594 9696 4.221924 TCCTTGTCAGTGGTGATAATTCGA 59.778 41.667 0.00 0.00 33.74 3.71
8619 9721 6.777782 AGGAGAGATGAAAAGAACAATGACT 58.222 36.000 0.00 0.00 0.00 3.41
8677 9797 6.103330 TGATTATCGAAATTGAACTCACCGA 58.897 36.000 0.00 0.00 0.00 4.69
8695 9815 6.182627 TCACCGATAGACAGTTTACTTAGGA 58.817 40.000 0.00 0.00 39.76 2.94
8707 9827 2.902705 ACTTAGGACAACTCGTTGCA 57.097 45.000 9.55 0.00 44.03 4.08
8878 10074 0.106217 AATGGGCCATTCCGGTTAGG 60.106 55.000 25.94 2.56 42.97 2.69
8880 10076 2.380285 GGGCCATTCCGGTTAGGGA 61.380 63.158 4.39 0.00 41.52 4.20
8923 10119 9.337396 AGATGGCAAAATAAGATACGTCATTTA 57.663 29.630 0.00 0.00 0.00 1.40
8944 10140 3.859411 AAACAGTTTTTGCGAGGTTGA 57.141 38.095 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.782384 CATTTCGTACGGCGCTATCC 59.218 55.000 16.52 0.00 41.07 2.59
34 35 6.822170 TCTCGGCTATGATAGTGTTATCGTAT 59.178 38.462 0.92 0.00 38.83 3.06
35 36 6.091849 GTCTCGGCTATGATAGTGTTATCGTA 59.908 42.308 0.92 0.00 38.83 3.43
114 117 8.450578 AGAACATCATCAAACTTGAGTAACAA 57.549 30.769 0.00 0.00 41.08 2.83
147 150 1.961394 TCGTACTTGAACTCACTGGCT 59.039 47.619 0.00 0.00 0.00 4.75
153 156 8.644619 CGAGAAAATTAATCGTACTTGAACTCA 58.355 33.333 0.00 0.00 0.00 3.41
171 174 0.036732 TCACAGCCCAGCGAGAAAAT 59.963 50.000 0.00 0.00 0.00 1.82
200 203 5.220557 TGTATTGATGCATTTCACTGACG 57.779 39.130 0.00 0.00 0.00 4.35
297 313 0.750249 AAACCAAAGGGCTCCAAACG 59.250 50.000 0.00 0.00 37.90 3.60
347 366 9.709495 TTTTAAAATGTGAAGGATGGATTTCTG 57.291 29.630 0.00 0.00 0.00 3.02
351 370 8.869109 TGTCTTTTAAAATGTGAAGGATGGATT 58.131 29.630 0.09 0.00 0.00 3.01
485 504 8.713271 CCTTCTTTTGCTTATAGGATACGAATC 58.287 37.037 0.00 0.00 46.39 2.52
541 578 5.767665 AGCTGGTTTTGTTTTGTTTTTCCTT 59.232 32.000 0.00 0.00 0.00 3.36
579 616 7.759886 GCTTTGTAGGGAATTTTTGTAGAATCC 59.240 37.037 0.00 0.00 0.00 3.01
695 732 3.320541 ACTTTGGAGAGAGAGACAGTGTG 59.679 47.826 0.00 0.00 0.00 3.82
923 961 2.185350 GAGCTAGCTCCTGCGCAA 59.815 61.111 30.89 0.00 45.42 4.85
1047 1085 3.839353 GAGCTGGCTGTGGTGCTGT 62.839 63.158 0.00 0.00 35.76 4.40
1429 1473 1.424240 CAGAAGCAGATGCAGCACG 59.576 57.895 4.07 0.00 45.16 5.34
1715 1759 2.285083 TCCAAGATTTATCGGTTGGCG 58.715 47.619 6.08 0.00 39.52 5.69
1721 1765 7.547227 AGGAAAAATGTTCCAAGATTTATCGG 58.453 34.615 4.82 0.00 41.00 4.18
1726 1770 7.855784 ACCTAGGAAAAATGTTCCAAGATTT 57.144 32.000 17.98 0.00 41.00 2.17
1770 1818 1.410004 AGAACGAACAGGTCACCTCA 58.590 50.000 0.00 0.00 39.61 3.86
2078 2130 4.154717 GCGCAAGAAGATGAAGAAGAAAC 58.845 43.478 0.30 0.00 43.02 2.78
2138 2190 3.119495 CGGACCCAGGAAATTTCACATTC 60.119 47.826 19.49 8.56 0.00 2.67
2181 2234 3.804325 CAGGATGCACGAGAAAACGATAT 59.196 43.478 0.00 0.00 37.03 1.63
2262 2315 2.703007 GAGCACCCTGATGAGGAATACT 59.297 50.000 0.00 0.00 42.93 2.12
2265 2318 1.890552 AGAGCACCCTGATGAGGAAT 58.109 50.000 0.00 0.00 42.93 3.01
2382 2435 4.620723 TGCCCAGGTTAGAAGAATCTCTA 58.379 43.478 0.00 0.00 37.10 2.43
2432 2485 4.609866 TTGGAGAGGAGAGGACTATTCA 57.390 45.455 0.00 0.00 0.00 2.57
2459 2512 3.189080 TGAATGGAAGAAACTGATGCGTG 59.811 43.478 0.00 0.00 0.00 5.34
2460 2513 3.189287 GTGAATGGAAGAAACTGATGCGT 59.811 43.478 0.00 0.00 0.00 5.24
2559 2616 1.495584 CCGAACACACCACCAACTCG 61.496 60.000 0.00 0.00 0.00 4.18
2702 2760 1.134250 CCTAGAAGAAGAAGGCTGGCC 60.134 57.143 3.00 3.00 0.00 5.36
2736 2794 2.519063 TGTTGGGCTGCACAGTGG 60.519 61.111 4.14 0.00 0.00 4.00
2834 2892 5.069383 AGCGTCTATCTCTCTCTACACAGTA 59.931 44.000 0.00 0.00 0.00 2.74
2835 2893 4.124238 GCGTCTATCTCTCTCTACACAGT 58.876 47.826 0.00 0.00 0.00 3.55
2836 2894 4.377021 AGCGTCTATCTCTCTCTACACAG 58.623 47.826 0.00 0.00 0.00 3.66
2837 2895 4.141914 TGAGCGTCTATCTCTCTCTACACA 60.142 45.833 0.00 0.00 0.00 3.72
2838 2896 4.373527 TGAGCGTCTATCTCTCTCTACAC 58.626 47.826 0.00 0.00 0.00 2.90
2839 2897 4.627058 CTGAGCGTCTATCTCTCTCTACA 58.373 47.826 0.00 0.00 0.00 2.74
2840 2898 3.432252 GCTGAGCGTCTATCTCTCTCTAC 59.568 52.174 0.00 0.00 0.00 2.59
2841 2899 3.323691 AGCTGAGCGTCTATCTCTCTCTA 59.676 47.826 0.00 0.00 0.00 2.43
2842 2900 2.104792 AGCTGAGCGTCTATCTCTCTCT 59.895 50.000 0.00 0.00 0.00 3.10
2843 2901 2.480419 GAGCTGAGCGTCTATCTCTCTC 59.520 54.545 0.00 0.00 0.00 3.20
2851 2915 0.678048 TGAGCTGAGCTGAGCGTCTA 60.678 55.000 19.78 4.66 44.24 2.59
2873 2937 1.839994 GACAGATGGGGGATGAACTGA 59.160 52.381 0.00 0.00 0.00 3.41
2874 2938 1.561076 TGACAGATGGGGGATGAACTG 59.439 52.381 0.00 0.00 0.00 3.16
2875 2939 1.561542 GTGACAGATGGGGGATGAACT 59.438 52.381 0.00 0.00 0.00 3.01
2876 2940 1.743772 CGTGACAGATGGGGGATGAAC 60.744 57.143 0.00 0.00 0.00 3.18
2877 2941 0.541392 CGTGACAGATGGGGGATGAA 59.459 55.000 0.00 0.00 0.00 2.57
2951 3015 9.323985 CAAAAAGATTCTAGGACAAGAGATAGG 57.676 37.037 0.00 0.00 0.00 2.57
2955 3019 7.661847 GGAACAAAAAGATTCTAGGACAAGAGA 59.338 37.037 0.00 0.00 0.00 3.10
3013 3077 2.484651 CACGTCGGACCCTATGATCTAG 59.515 54.545 1.91 0.00 0.00 2.43
3028 3092 3.361724 GCAAAGACTAAGAACACACGTCG 60.362 47.826 0.00 0.00 0.00 5.12
3094 3158 0.463654 GCCCTGGCATCATCGTGTTA 60.464 55.000 2.58 0.00 41.49 2.41
3153 3217 2.173519 GCAGGTGTGTGGGTAGTAGTA 58.826 52.381 0.00 0.00 0.00 1.82
3154 3218 0.974383 GCAGGTGTGTGGGTAGTAGT 59.026 55.000 0.00 0.00 0.00 2.73
3155 3219 0.973632 TGCAGGTGTGTGGGTAGTAG 59.026 55.000 0.00 0.00 0.00 2.57
3201 3267 3.720193 GCTGGCAGCAGACGTGTG 61.720 66.667 33.33 8.61 41.89 3.82
3635 3709 4.915194 AGTCTAGCTACTCCTACACCCTAT 59.085 45.833 0.00 0.00 0.00 2.57
3639 3713 5.549742 TCTAGTCTAGCTACTCCTACACC 57.450 47.826 1.60 0.00 0.00 4.16
3705 3796 3.993081 GACCGCCATTATTCATGAGAGAG 59.007 47.826 0.00 0.00 34.31 3.20
3706 3797 3.387699 TGACCGCCATTATTCATGAGAGA 59.612 43.478 0.00 0.00 34.31 3.10
3824 3920 8.630054 AGTCTAGCAAGAAGTATATAGGACAG 57.370 38.462 0.00 0.00 32.16 3.51
3896 4038 5.835113 TTCTCTTGGAAACACTGAAAAGG 57.165 39.130 0.00 0.00 42.67 3.11
3964 4106 4.072131 GCCCTTCAACTTGTGATGTTAGA 58.928 43.478 0.00 0.00 35.70 2.10
3971 4113 3.740764 GCATTTTGCCCTTCAACTTGTGA 60.741 43.478 0.00 0.00 37.42 3.58
3980 4122 6.456795 AATTAGTCTAGCATTTTGCCCTTC 57.543 37.500 0.00 0.00 46.52 3.46
4056 4198 7.623925 GCTTTGTTGTTTTCTGATGAGCAAAAA 60.624 33.333 0.00 0.00 0.00 1.94
4080 4222 5.924825 GCAACATCAATCAGAAAAGAAAGCT 59.075 36.000 0.00 0.00 0.00 3.74
4297 4440 3.295093 TCCAGTTGCATTGTCTTTTCCA 58.705 40.909 0.00 0.00 0.00 3.53
4530 4801 1.354031 TGGGAAGGCATGAAGCTTGTA 59.646 47.619 2.10 0.00 44.79 2.41
4640 4914 4.160252 AGCGGCAAATATGAAAAACCTCAT 59.840 37.500 1.45 0.00 39.41 2.90
4718 4993 2.354103 CCACAGGAGTCACGTCATCAAT 60.354 50.000 0.00 0.00 0.00 2.57
4867 5307 4.386652 CCAGAATGTGTTAAACAATGCTGC 59.613 41.667 0.00 0.00 43.61 5.25
4868 5308 4.386652 GCCAGAATGTGTTAAACAATGCTG 59.613 41.667 0.00 0.00 43.61 4.41
4876 5316 6.403866 AATCTTGTGCCAGAATGTGTTAAA 57.596 33.333 0.00 0.00 0.00 1.52
5083 5524 4.142093 ACAAATAAGATGCGTACGTAGGGT 60.142 41.667 17.90 4.02 0.00 4.34
5087 5528 7.194962 TCATGTACAAATAAGATGCGTACGTA 58.805 34.615 17.90 13.65 36.15 3.57
5088 5529 6.037726 TCATGTACAAATAAGATGCGTACGT 58.962 36.000 17.90 0.00 36.15 3.57
5089 5530 6.198403 ACTCATGTACAAATAAGATGCGTACG 59.802 38.462 11.84 11.84 36.15 3.67
5090 5531 7.464830 ACTCATGTACAAATAAGATGCGTAC 57.535 36.000 0.00 0.00 34.40 3.67
5177 5618 4.287067 AGGATACAAGACTTGGAGAAAGCA 59.713 41.667 19.16 0.00 38.26 3.91
5242 5683 7.117379 ACATGTATAAGTTGAGATGCATCGATG 59.883 37.037 21.27 21.27 0.00 3.84
5245 5686 6.587651 CACATGTATAAGTTGAGATGCATCG 58.412 40.000 20.67 4.17 0.00 3.84
5248 5689 5.184711 TGCACATGTATAAGTTGAGATGCA 58.815 37.500 0.00 0.00 37.03 3.96
5250 5691 8.969121 TTTTTGCACATGTATAAGTTGAGATG 57.031 30.769 0.00 0.00 0.00 2.90
5251 5692 8.796475 ACTTTTTGCACATGTATAAGTTGAGAT 58.204 29.630 0.00 0.00 0.00 2.75
5252 5693 8.165239 ACTTTTTGCACATGTATAAGTTGAGA 57.835 30.769 0.00 0.00 0.00 3.27
5253 5694 8.693504 CAACTTTTTGCACATGTATAAGTTGAG 58.306 33.333 24.25 10.52 35.26 3.02
5254 5695 8.572828 CAACTTTTTGCACATGTATAAGTTGA 57.427 30.769 24.25 0.57 35.26 3.18
5287 5729 4.196193 TGCATGGGTATTGCTTGTACTAC 58.804 43.478 0.00 0.00 40.77 2.73
5291 5733 3.895998 TGATGCATGGGTATTGCTTGTA 58.104 40.909 2.46 0.00 40.77 2.41
5297 5739 6.039605 TCAGTTATGTTGATGCATGGGTATTG 59.960 38.462 2.46 0.00 0.00 1.90
5305 5748 7.634671 TCAGATTTCAGTTATGTTGATGCAT 57.365 32.000 0.00 0.00 0.00 3.96
5358 5801 3.065575 GGTGGCACCTTACGATGAG 57.934 57.895 29.22 0.00 34.73 2.90
5368 5811 0.462047 CCTTACGATGAGGTGGCACC 60.462 60.000 29.32 29.32 38.99 5.01
5369 5812 0.249398 ACCTTACGATGAGGTGGCAC 59.751 55.000 9.70 9.70 45.59 5.01
5370 5813 2.678786 ACCTTACGATGAGGTGGCA 58.321 52.632 8.02 0.00 45.59 4.92
5424 5867 8.523915 AGAAATAAATCATGCTGTCCAATACA 57.476 30.769 0.00 0.00 36.42 2.29
5672 6115 7.203218 TCTATAACACCAAATCAGTCTCGATG 58.797 38.462 0.00 0.00 0.00 3.84
5714 6161 7.801783 CCTCGTTTAAGTTTGACCAAGTTTATC 59.198 37.037 0.00 0.00 30.16 1.75
5718 6165 4.945543 ACCTCGTTTAAGTTTGACCAAGTT 59.054 37.500 0.00 0.00 32.41 2.66
5743 6190 5.952347 GGAAGTTCTGGATTTATCCCAAGTT 59.048 40.000 6.32 7.94 46.59 2.66
5781 6229 7.907389 TGAATGAACTTTGACATACTACCTCT 58.093 34.615 0.00 0.00 0.00 3.69
5818 6274 6.600427 TGTCCAGTGATAGTTGATACTTCGTA 59.400 38.462 0.00 0.00 35.78 3.43
5820 6276 5.744345 GTGTCCAGTGATAGTTGATACTTCG 59.256 44.000 0.00 0.00 35.78 3.79
5844 6300 5.048364 TCCACAAACATTCATAAGAAACCCG 60.048 40.000 0.00 0.00 37.29 5.28
5884 6340 8.685427 CCATAATAGTTTGTCAAATGTGGATCA 58.315 33.333 0.40 0.00 0.00 2.92
6223 6889 2.162681 AGCTGTACACCATTTTGGAGC 58.837 47.619 0.00 0.00 40.96 4.70
6313 6982 5.165676 CCCCGTAAGCTTTTCCAAATAAAC 58.834 41.667 3.20 0.00 0.00 2.01
6338 7007 1.890876 AATGCTCAGGTGTGCGTAAA 58.109 45.000 0.00 0.00 37.35 2.01
6342 7011 0.109597 GGAAAATGCTCAGGTGTGCG 60.110 55.000 0.02 0.00 37.35 5.34
6409 7078 3.310435 GGAACCCTACCCTCCTCTCTTAA 60.310 52.174 0.00 0.00 0.00 1.85
6454 7123 8.931385 AGCATTACATATAAAGCTGGTTTTTG 57.069 30.769 10.36 8.64 42.32 2.44
6456 7125 8.971073 AGAAGCATTACATATAAAGCTGGTTTT 58.029 29.630 10.36 1.86 42.93 2.43
6474 7143 4.619679 AGGGAGTAGAAGAGAGAAGCATT 58.380 43.478 0.00 0.00 0.00 3.56
6475 7144 4.215109 GAGGGAGTAGAAGAGAGAAGCAT 58.785 47.826 0.00 0.00 0.00 3.79
6489 7158 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
6490 7159 7.564292 ACTCTTATATTTCTTTACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
6491 7160 7.868415 CACTCTTATATTTCTTTACGGAGGGAG 59.132 40.741 0.00 0.00 0.00 4.30
6492 7161 7.343833 ACACTCTTATATTTCTTTACGGAGGGA 59.656 37.037 0.00 0.00 0.00 4.20
6493 7162 7.498443 ACACTCTTATATTTCTTTACGGAGGG 58.502 38.462 0.00 0.00 0.00 4.30
6494 7163 8.943909 AACACTCTTATATTTCTTTACGGAGG 57.056 34.615 0.00 0.00 0.00 4.30
6508 7177 9.399797 TCCGTAAGTGATCTAAACACTCTTATA 57.600 33.333 0.00 0.00 46.01 0.98
6509 7178 8.289939 TCCGTAAGTGATCTAAACACTCTTAT 57.710 34.615 0.00 0.00 46.01 1.73
6510 7179 7.148120 CCTCCGTAAGTGATCTAAACACTCTTA 60.148 40.741 0.00 0.00 46.01 2.10
6511 7180 6.350277 CCTCCGTAAGTGATCTAAACACTCTT 60.350 42.308 0.00 0.00 46.01 2.85
6512 7181 5.125739 CCTCCGTAAGTGATCTAAACACTCT 59.874 44.000 0.00 0.00 46.01 3.24
6513 7182 5.341617 CCTCCGTAAGTGATCTAAACACTC 58.658 45.833 0.00 0.00 46.01 3.51
6515 7184 4.159135 TCCCTCCGTAAGTGATCTAAACAC 59.841 45.833 0.00 0.00 38.38 3.32
6516 7185 4.346730 TCCCTCCGTAAGTGATCTAAACA 58.653 43.478 0.00 0.00 0.00 2.83
6517 7186 4.401837 ACTCCCTCCGTAAGTGATCTAAAC 59.598 45.833 0.00 0.00 0.00 2.01
6518 7187 4.607239 ACTCCCTCCGTAAGTGATCTAAA 58.393 43.478 0.00 0.00 0.00 1.85
6519 7188 4.246712 ACTCCCTCCGTAAGTGATCTAA 57.753 45.455 0.00 0.00 0.00 2.10
6520 7189 3.947612 ACTCCCTCCGTAAGTGATCTA 57.052 47.619 0.00 0.00 0.00 1.98
6521 7190 2.830651 ACTCCCTCCGTAAGTGATCT 57.169 50.000 0.00 0.00 0.00 2.75
6522 7191 3.952967 AGTTACTCCCTCCGTAAGTGATC 59.047 47.826 0.00 0.00 31.27 2.92
6523 7192 3.952967 GAGTTACTCCCTCCGTAAGTGAT 59.047 47.826 0.00 0.00 32.29 3.06
6524 7193 3.009916 AGAGTTACTCCCTCCGTAAGTGA 59.990 47.826 8.96 0.00 32.29 3.41
6525 7194 3.354467 AGAGTTACTCCCTCCGTAAGTG 58.646 50.000 8.96 0.00 32.29 3.16
6526 7195 3.266513 AGAGAGTTACTCCCTCCGTAAGT 59.733 47.826 8.96 0.00 45.96 2.24
6527 7196 3.888583 AGAGAGTTACTCCCTCCGTAAG 58.111 50.000 8.96 0.00 45.96 2.34
6528 7197 4.313020 AAGAGAGTTACTCCCTCCGTAA 57.687 45.455 8.96 0.00 45.96 3.18
6529 7198 4.313020 AAAGAGAGTTACTCCCTCCGTA 57.687 45.455 8.96 0.00 45.96 4.02
6530 7199 2.903375 AAGAGAGTTACTCCCTCCGT 57.097 50.000 8.96 0.00 45.96 4.69
6531 7200 4.096682 CAGTAAAGAGAGTTACTCCCTCCG 59.903 50.000 8.96 0.00 45.96 4.63
6532 7201 5.262804 TCAGTAAAGAGAGTTACTCCCTCC 58.737 45.833 8.96 0.00 45.96 4.30
6533 7202 6.623331 CGTTCAGTAAAGAGAGTTACTCCCTC 60.623 46.154 8.96 1.09 45.96 4.30
6534 7203 5.183522 CGTTCAGTAAAGAGAGTTACTCCCT 59.816 44.000 8.96 0.00 45.96 4.20
6535 7204 5.048154 ACGTTCAGTAAAGAGAGTTACTCCC 60.048 44.000 8.96 0.00 45.96 4.30
6536 7205 6.011476 ACGTTCAGTAAAGAGAGTTACTCC 57.989 41.667 8.96 0.88 45.96 3.85
6547 7216 6.533723 TGGCAAGTCATATACGTTCAGTAAAG 59.466 38.462 0.00 0.00 39.04 1.85
6699 7384 2.411628 TCATGTGTTCATAACCCCGG 57.588 50.000 0.00 0.00 32.47 5.73
6752 7619 1.751924 ACTTTTGGTTGCGTTGGCTAA 59.248 42.857 0.00 0.00 40.82 3.09
6760 7627 0.661020 AGTTCGGACTTTTGGTTGCG 59.339 50.000 0.00 0.00 29.87 4.85
6773 7640 0.250513 AGCCCTTTCTAGCAGTTCGG 59.749 55.000 0.00 0.00 0.00 4.30
6883 7750 8.677300 GGAACTTTATCTTGCATGAATTCAGTA 58.323 33.333 14.54 3.24 0.00 2.74
6910 7777 5.530915 CCACCTGTGAGAAGTGAAATAACAA 59.469 40.000 0.00 0.00 33.21 2.83
6934 7801 6.926272 AGTGAAGAAACATCAACTAGTCACTC 59.074 38.462 0.00 0.00 39.03 3.51
6939 7806 8.926710 CGATTTAGTGAAGAAACATCAACTAGT 58.073 33.333 0.00 0.00 0.00 2.57
6943 7810 7.572759 TCACGATTTAGTGAAGAAACATCAAC 58.427 34.615 0.00 0.00 46.81 3.18
6981 7848 7.820044 AACAAATAGCAGTTTCGAACAAAAA 57.180 28.000 0.00 0.00 0.00 1.94
7029 7898 5.351740 GCTCATGGTAGTAGACAGGAAAAAC 59.648 44.000 0.00 0.00 0.00 2.43
7030 7899 5.012664 TGCTCATGGTAGTAGACAGGAAAAA 59.987 40.000 0.00 0.00 0.00 1.94
7084 7953 2.754946 TTCGTGAATGGAGGGTGTAC 57.245 50.000 0.00 0.00 0.00 2.90
7131 8000 8.436778 ACACTAAAACATGCCTATATACATCCA 58.563 33.333 0.00 0.00 0.00 3.41
7132 8001 8.721478 CACACTAAAACATGCCTATATACATCC 58.279 37.037 0.00 0.00 0.00 3.51
7144 8013 5.005299 GGTGAACAAACACACTAAAACATGC 59.995 40.000 0.00 0.00 41.88 4.06
7147 8016 4.523173 TGGGTGAACAAACACACTAAAACA 59.477 37.500 0.00 0.00 43.64 2.83
7148 8017 5.061920 TGGGTGAACAAACACACTAAAAC 57.938 39.130 0.00 0.00 43.64 2.43
7152 8021 4.950475 TGAAATGGGTGAACAAACACACTA 59.050 37.500 0.00 0.00 43.64 2.74
7168 8037 5.178061 TGCACTACATACAGACTGAAATGG 58.822 41.667 10.08 3.93 0.00 3.16
7235 8135 4.664150 ACCTCCATTTCTTTCGCAAAAA 57.336 36.364 0.00 0.00 0.00 1.94
7236 8136 4.825085 ACTACCTCCATTTCTTTCGCAAAA 59.175 37.500 0.00 0.00 0.00 2.44
7237 8137 4.394729 ACTACCTCCATTTCTTTCGCAAA 58.605 39.130 0.00 0.00 0.00 3.68
7238 8138 4.015872 ACTACCTCCATTTCTTTCGCAA 57.984 40.909 0.00 0.00 0.00 4.85
7239 8139 3.695830 ACTACCTCCATTTCTTTCGCA 57.304 42.857 0.00 0.00 0.00 5.10
7240 8140 6.093633 ACAAATACTACCTCCATTTCTTTCGC 59.906 38.462 0.00 0.00 0.00 4.70
7241 8141 7.333423 TGACAAATACTACCTCCATTTCTTTCG 59.667 37.037 0.00 0.00 0.00 3.46
7242 8142 8.561738 TGACAAATACTACCTCCATTTCTTTC 57.438 34.615 0.00 0.00 0.00 2.62
7243 8143 8.934023 TTGACAAATACTACCTCCATTTCTTT 57.066 30.769 0.00 0.00 0.00 2.52
7244 8144 8.383175 TCTTGACAAATACTACCTCCATTTCTT 58.617 33.333 0.00 0.00 0.00 2.52
7245 8145 7.824779 GTCTTGACAAATACTACCTCCATTTCT 59.175 37.037 0.00 0.00 0.00 2.52
7246 8146 7.606456 TGTCTTGACAAATACTACCTCCATTTC 59.394 37.037 0.44 0.00 0.00 2.17
7247 8147 7.458397 TGTCTTGACAAATACTACCTCCATTT 58.542 34.615 0.44 0.00 0.00 2.32
7314 8214 4.207224 AGCGAGAATAATGTTCGTTCATCG 59.793 41.667 0.00 0.00 41.41 3.84
7322 8226 8.700994 GCTTTTACATAGCGAGAATAATGTTC 57.299 34.615 0.00 0.00 34.54 3.18
7701 8763 7.455641 TCGAGAAGAGAAGTTCTAGAAATGT 57.544 36.000 6.78 0.00 35.86 2.71
7740 8803 3.529533 CTCTCCTGTAGGACAATGCAAG 58.470 50.000 0.00 0.00 39.78 4.01
7752 8816 1.561643 CACCTTCTGGCTCTCCTGTA 58.438 55.000 0.00 0.00 36.63 2.74
7984 9048 2.825982 CACCGACCAAGGTCACCA 59.174 61.111 18.57 0.00 43.89 4.17
8039 9109 1.878775 CTTCGGTCGTCGGTAACCT 59.121 57.895 0.00 0.00 39.77 3.50
8042 9112 0.729116 CTAGCTTCGGTCGTCGGTAA 59.271 55.000 0.00 0.00 39.77 2.85
8043 9113 0.391661 ACTAGCTTCGGTCGTCGGTA 60.392 55.000 0.00 0.00 39.77 4.02
8354 9447 5.446143 AACAACCAACGATTGAAGCATAA 57.554 34.783 0.00 0.00 0.00 1.90
8356 9449 4.320608 AAACAACCAACGATTGAAGCAT 57.679 36.364 0.00 0.00 0.00 3.79
8362 9455 5.171337 CGAAGAAGAAAACAACCAACGATTG 59.829 40.000 0.00 0.00 0.00 2.67
8372 9465 4.634004 TGAAGCAGTCGAAGAAGAAAACAA 59.366 37.500 0.00 0.00 39.69 2.83
8373 9466 4.188462 TGAAGCAGTCGAAGAAGAAAACA 58.812 39.130 0.00 0.00 39.69 2.83
8379 9472 4.167554 ACTACTGAAGCAGTCGAAGAAG 57.832 45.455 2.97 0.00 41.21 2.85
8385 9478 2.476619 CACCAAACTACTGAAGCAGTCG 59.523 50.000 2.97 0.46 41.21 4.18
8420 9514 1.889829 CTTAACCGCAAAATCACCCCA 59.110 47.619 0.00 0.00 0.00 4.96
8470 9564 0.738975 CCGCTACAAGAGACCATCGA 59.261 55.000 0.00 0.00 0.00 3.59
8482 9576 1.135527 GCTACACCATACACCGCTACA 59.864 52.381 0.00 0.00 0.00 2.74
8499 9593 4.783055 TGGTTTAAGTTCAGGTTGTGCTA 58.217 39.130 0.00 0.00 0.00 3.49
8540 9634 0.752658 TCATCTCCACGAATCCGCAT 59.247 50.000 0.00 0.00 39.95 4.73
8549 9643 1.600013 CGGTAGAGTCTCATCTCCACG 59.400 57.143 0.00 0.00 35.28 4.94
8579 9673 4.956700 TCTCTCCTTCGAATTATCACCACT 59.043 41.667 0.00 0.00 0.00 4.00
8594 9696 7.230027 AGTCATTGTTCTTTTCATCTCTCCTT 58.770 34.615 0.00 0.00 0.00 3.36
8619 9721 5.305902 TCATAGCCCACCGACTATCAAAATA 59.694 40.000 0.00 0.00 0.00 1.40
8677 9797 7.176340 ACGAGTTGTCCTAAGTAAACTGTCTAT 59.824 37.037 0.00 0.00 33.14 1.98
8695 9815 1.674359 TGGAATGTGCAACGAGTTGT 58.326 45.000 16.14 0.00 42.39 3.32
8707 9827 5.862924 CAACTTCTCATACGTTGGAATGT 57.137 39.130 0.00 0.00 35.57 2.71
8762 9892 6.127479 GCATGAACCAACACCAAAGGATATTA 60.127 38.462 0.00 0.00 0.00 0.98
8805 9935 7.069950 AGTCTACAAGCAATGGTGTATGATCTA 59.930 37.037 0.00 0.00 30.14 1.98
8842 9972 3.804325 CCCATTCACGTGTGATGATAGTC 59.196 47.826 25.50 0.00 39.64 2.59
8878 10074 6.704050 GCCATCTCTCAAGACTAGTATTTTCC 59.296 42.308 0.00 0.00 33.32 3.13
8880 10076 7.187824 TGCCATCTCTCAAGACTAGTATTTT 57.812 36.000 0.00 0.00 33.32 1.82
8884 10080 6.605471 TTTTGCCATCTCTCAAGACTAGTA 57.395 37.500 0.00 0.00 33.32 1.82
8923 10119 4.173256 CTCAACCTCGCAAAAACTGTTTT 58.827 39.130 12.50 12.50 37.43 2.43
8925 10121 2.479560 GCTCAACCTCGCAAAAACTGTT 60.480 45.455 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.