Multiple sequence alignment - TraesCS4A01G255300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G255300 chr4A 100.000 4968 0 0 1 4968 567475443 567480410 0.000000e+00 9175.0
1 TraesCS4A01G255300 chr4A 73.723 274 55 10 4461 4721 61615914 61616183 1.900000e-14 91.6
2 TraesCS4A01G255300 chr4D 92.181 3210 132 45 1825 4968 35168595 35165439 0.000000e+00 4427.0
3 TraesCS4A01G255300 chr4D 91.889 863 45 9 793 1655 35169583 35168746 0.000000e+00 1182.0
4 TraesCS4A01G255300 chr4D 86.667 180 17 4 274 452 35170103 35169930 5.080000e-45 193.0
5 TraesCS4A01G255300 chr4D 81.373 204 23 8 574 775 35169756 35169566 8.610000e-33 152.0
6 TraesCS4A01G255300 chr4D 74.013 304 60 12 4458 4747 404111289 404111587 6.800000e-19 106.0
7 TraesCS4A01G255300 chr4D 90.789 76 3 2 3374 3449 35166975 35166904 1.140000e-16 99.0
8 TraesCS4A01G255300 chr4D 100.000 42 0 0 493 534 342523426 342523385 1.480000e-10 78.7
9 TraesCS4A01G255300 chr4D 97.674 43 1 0 492 534 440044405 440044363 1.920000e-09 75.0
10 TraesCS4A01G255300 chr4B 90.594 2424 101 57 2629 4968 50834306 50836686 0.000000e+00 3096.0
11 TraesCS4A01G255300 chr4B 90.600 883 56 15 790 1656 50832537 50833408 0.000000e+00 1146.0
12 TraesCS4A01G255300 chr4B 85.140 895 87 26 1723 2586 50833422 50834301 0.000000e+00 874.0
13 TraesCS4A01G255300 chr4B 90.393 229 17 4 274 498 51120539 51120312 3.760000e-76 296.0
14 TraesCS4A01G255300 chr4B 87.023 131 14 2 645 773 50832426 50832555 1.440000e-30 145.0
15 TraesCS4A01G255300 chr4B 74.426 305 59 12 4457 4747 500868715 500869014 4.060000e-21 113.0
16 TraesCS4A01G255300 chr5D 85.870 276 37 2 1 275 368033941 368034215 4.860000e-75 292.0
17 TraesCS4A01G255300 chr5D 77.778 225 35 9 4476 4688 1802225 1802004 1.880000e-24 124.0
18 TraesCS4A01G255300 chr5D 76.577 111 23 2 4467 4577 351806919 351807026 1.930000e-04 58.4
19 TraesCS4A01G255300 chr2D 85.612 278 33 4 1 277 333497265 333497536 8.140000e-73 285.0
20 TraesCS4A01G255300 chr2D 84.477 277 38 3 1 277 645042426 645042155 8.200000e-68 268.0
21 TraesCS4A01G255300 chr1D 83.746 283 38 4 1 278 18675682 18675961 1.370000e-65 261.0
22 TraesCS4A01G255300 chr1D 83.582 268 42 2 1 267 422289291 422289557 2.970000e-62 250.0
23 TraesCS4A01G255300 chr6B 83.154 279 43 3 1 279 563139951 563139677 8.260000e-63 252.0
24 TraesCS4A01G255300 chr6D 81.655 278 40 7 1 278 21359260 21358994 2.330000e-53 220.0
25 TraesCS4A01G255300 chr5A 83.333 234 34 4 1 233 489116737 489116966 1.400000e-50 211.0
26 TraesCS4A01G255300 chr5A 78.431 102 19 2 4482 4583 454271870 454271772 4.150000e-06 63.9
27 TraesCS4A01G255300 chr7A 82.158 241 40 3 1 239 625973905 625974144 2.340000e-48 204.0
28 TraesCS4A01G255300 chr7A 100.000 41 0 0 494 534 592258682 592258722 5.330000e-10 76.8
29 TraesCS4A01G255300 chr7A 76.056 142 32 2 4618 4758 652288418 652288278 6.900000e-09 73.1
30 TraesCS4A01G255300 chr3B 76.744 301 49 14 4471 4756 673170230 673170524 1.110000e-31 148.0
31 TraesCS4A01G255300 chr3B 89.474 57 5 1 478 534 31404271 31404326 2.480000e-08 71.3
32 TraesCS4A01G255300 chrUn 77.333 225 36 8 4476 4688 122077695 122077474 8.740000e-23 119.0
33 TraesCS4A01G255300 chr5B 76.923 221 36 8 4480 4688 656280 656497 1.460000e-20 111.0
34 TraesCS4A01G255300 chr5B 74.286 315 50 23 4443 4734 682819933 682819627 2.450000e-18 104.0
35 TraesCS4A01G255300 chr5B 100.000 40 0 0 495 534 690039276 690039315 1.920000e-09 75.0
36 TraesCS4A01G255300 chr5B 77.451 102 20 2 4482 4583 417153698 417153600 1.930000e-04 58.4
37 TraesCS4A01G255300 chr3A 74.419 301 56 15 4471 4756 647613747 647613453 5.260000e-20 110.0
38 TraesCS4A01G255300 chr7D 73.663 243 47 10 4489 4718 566016090 566015852 1.480000e-10 78.7
39 TraesCS4A01G255300 chr7B 100.000 41 0 0 494 534 672759781 672759741 5.330000e-10 76.8
40 TraesCS4A01G255300 chr2A 97.674 43 1 0 492 534 703344124 703344082 1.920000e-09 75.0
41 TraesCS4A01G255300 chr2A 97.674 43 1 0 492 534 709609231 709609273 1.920000e-09 75.0
42 TraesCS4A01G255300 chr2B 95.652 46 1 1 490 534 733977237 733977192 6.900000e-09 73.1
43 TraesCS4A01G255300 chr1B 94.444 36 0 2 4884 4918 626687980 626687946 2.000000e-03 54.7
44 TraesCS4A01G255300 chr1A 94.444 36 0 2 4884 4918 549712144 549712110 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G255300 chr4A 567475443 567480410 4967 False 9175.00 9175 100.00000 1 4968 1 chr4A.!!$F2 4967
1 TraesCS4A01G255300 chr4D 35165439 35170103 4664 True 1210.60 4427 88.57980 274 4968 5 chr4D.!!$R3 4694
2 TraesCS4A01G255300 chr4B 50832426 50836686 4260 False 1315.25 3096 88.33925 645 4968 4 chr4B.!!$F2 4323

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 158 0.034574 TCGGGTGCATTGGCTGTTAT 60.035 50.000 0.00 0.0 41.91 1.89 F
276 277 0.038251 CGCGGCTGGATATGCTCTAA 60.038 55.000 0.00 0.0 0.00 2.10 F
784 887 0.187117 TCACATTGGCACCCCTCAAA 59.813 50.000 0.00 0.0 0.00 2.69 F
1421 1536 0.179234 TGTGATGTGTGGTGTTCGGT 59.821 50.000 0.00 0.0 0.00 4.69 F
2009 2172 1.917872 AAAGGGGCAAATGCTTCGTA 58.082 45.000 5.25 0.0 41.70 3.43 F
3570 3793 1.539388 CTTGCTTATCCCAAACACGCA 59.461 47.619 0.00 0.0 0.00 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1314 1428 0.030235 CAGACGTCGTCTTGTCACCA 59.970 55.000 24.94 0.0 41.37 4.17 R
1402 1517 0.179234 ACCGAACACCACACATCACA 59.821 50.000 0.00 0.0 0.00 3.58 R
1987 2150 1.000731 CGAAGCATTTGCCCCTTTTCA 59.999 47.619 0.00 0.0 43.38 2.69 R
3185 3375 0.869730 GATTGGTTGCGGTGTTACGT 59.130 50.000 0.00 0.0 35.98 3.57 R
3931 4163 0.514691 GAGTTTCTTGGTGCTGAGCG 59.485 55.000 0.00 0.0 0.00 5.03 R
4790 5054 2.575993 GAGGAGAGCTCGCAGCAA 59.424 61.111 19.55 0.0 45.56 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.767902 GGGAGGAATGGAGAGAATGAG 57.232 52.381 0.00 0.00 0.00 2.90
21 22 3.312890 GGGAGGAATGGAGAGAATGAGA 58.687 50.000 0.00 0.00 0.00 3.27
22 23 3.324556 GGGAGGAATGGAGAGAATGAGAG 59.675 52.174 0.00 0.00 0.00 3.20
23 24 3.324556 GGAGGAATGGAGAGAATGAGAGG 59.675 52.174 0.00 0.00 0.00 3.69
24 25 3.316501 AGGAATGGAGAGAATGAGAGGG 58.683 50.000 0.00 0.00 0.00 4.30
25 26 3.051496 AGGAATGGAGAGAATGAGAGGGA 60.051 47.826 0.00 0.00 0.00 4.20
26 27 3.713764 GGAATGGAGAGAATGAGAGGGAA 59.286 47.826 0.00 0.00 0.00 3.97
27 28 4.202346 GGAATGGAGAGAATGAGAGGGAAG 60.202 50.000 0.00 0.00 0.00 3.46
28 29 2.114616 TGGAGAGAATGAGAGGGAAGC 58.885 52.381 0.00 0.00 0.00 3.86
29 30 1.416030 GGAGAGAATGAGAGGGAAGCC 59.584 57.143 0.00 0.00 0.00 4.35
30 31 2.114616 GAGAGAATGAGAGGGAAGCCA 58.885 52.381 0.00 0.00 0.00 4.75
31 32 2.102925 GAGAGAATGAGAGGGAAGCCAG 59.897 54.545 0.00 0.00 0.00 4.85
32 33 1.140652 GAGAATGAGAGGGAAGCCAGG 59.859 57.143 0.00 0.00 0.00 4.45
33 34 1.207791 GAATGAGAGGGAAGCCAGGA 58.792 55.000 0.00 0.00 0.00 3.86
34 35 1.140652 GAATGAGAGGGAAGCCAGGAG 59.859 57.143 0.00 0.00 0.00 3.69
35 36 0.693767 ATGAGAGGGAAGCCAGGAGG 60.694 60.000 0.00 0.00 38.23 4.30
36 37 1.002274 GAGAGGGAAGCCAGGAGGA 59.998 63.158 0.00 0.00 36.89 3.71
37 38 0.618968 GAGAGGGAAGCCAGGAGGAA 60.619 60.000 0.00 0.00 36.89 3.36
38 39 0.178861 AGAGGGAAGCCAGGAGGAAA 60.179 55.000 0.00 0.00 36.89 3.13
39 40 0.254462 GAGGGAAGCCAGGAGGAAAG 59.746 60.000 0.00 0.00 36.89 2.62
40 41 1.379176 GGGAAGCCAGGAGGAAAGC 60.379 63.158 0.00 0.00 36.89 3.51
41 42 1.746991 GGAAGCCAGGAGGAAAGCG 60.747 63.158 0.00 0.00 36.89 4.68
42 43 1.746991 GAAGCCAGGAGGAAAGCGG 60.747 63.158 0.00 0.00 36.89 5.52
43 44 3.273788 AAGCCAGGAGGAAAGCGGG 62.274 63.158 0.00 0.00 36.89 6.13
44 45 3.717294 GCCAGGAGGAAAGCGGGA 61.717 66.667 0.00 0.00 36.89 5.14
45 46 3.077907 CCAGGAGGAAAGCGGGAA 58.922 61.111 0.00 0.00 36.89 3.97
46 47 1.078143 CCAGGAGGAAAGCGGGAAG 60.078 63.158 0.00 0.00 36.89 3.46
47 48 1.553690 CCAGGAGGAAAGCGGGAAGA 61.554 60.000 0.00 0.00 36.89 2.87
48 49 0.324943 CAGGAGGAAAGCGGGAAGAA 59.675 55.000 0.00 0.00 0.00 2.52
49 50 1.064825 AGGAGGAAAGCGGGAAGAAA 58.935 50.000 0.00 0.00 0.00 2.52
50 51 1.166129 GGAGGAAAGCGGGAAGAAAC 58.834 55.000 0.00 0.00 0.00 2.78
51 52 1.544759 GGAGGAAAGCGGGAAGAAACA 60.545 52.381 0.00 0.00 0.00 2.83
52 53 1.807142 GAGGAAAGCGGGAAGAAACAG 59.193 52.381 0.00 0.00 0.00 3.16
53 54 0.241213 GGAAAGCGGGAAGAAACAGC 59.759 55.000 0.00 0.00 0.00 4.40
54 55 0.110192 GAAAGCGGGAAGAAACAGCG 60.110 55.000 0.00 0.00 0.00 5.18
55 56 1.515521 AAAGCGGGAAGAAACAGCGG 61.516 55.000 0.00 0.00 0.00 5.52
56 57 3.431725 GCGGGAAGAAACAGCGGG 61.432 66.667 0.00 0.00 0.00 6.13
57 58 2.345991 CGGGAAGAAACAGCGGGA 59.654 61.111 0.00 0.00 0.00 5.14
58 59 1.302192 CGGGAAGAAACAGCGGGAA 60.302 57.895 0.00 0.00 0.00 3.97
59 60 0.887387 CGGGAAGAAACAGCGGGAAA 60.887 55.000 0.00 0.00 0.00 3.13
60 61 1.324383 GGGAAGAAACAGCGGGAAAA 58.676 50.000 0.00 0.00 0.00 2.29
61 62 1.269723 GGGAAGAAACAGCGGGAAAAG 59.730 52.381 0.00 0.00 0.00 2.27
62 63 1.269723 GGAAGAAACAGCGGGAAAAGG 59.730 52.381 0.00 0.00 0.00 3.11
63 64 0.673985 AAGAAACAGCGGGAAAAGGC 59.326 50.000 0.00 0.00 0.00 4.35
64 65 1.179174 AGAAACAGCGGGAAAAGGCC 61.179 55.000 0.00 0.00 0.00 5.19
65 66 2.154798 GAAACAGCGGGAAAAGGCCC 62.155 60.000 0.00 0.00 45.10 5.80
66 67 4.678743 ACAGCGGGAAAAGGCCCC 62.679 66.667 0.00 0.00 45.84 5.80
81 82 2.037367 CCCCCTCTCACCGACAGA 59.963 66.667 0.00 0.00 0.00 3.41
82 83 2.055042 CCCCCTCTCACCGACAGAG 61.055 68.421 0.00 0.00 37.70 3.35
83 84 2.716017 CCCCTCTCACCGACAGAGC 61.716 68.421 0.00 0.00 36.77 4.09
84 85 1.979155 CCCTCTCACCGACAGAGCA 60.979 63.158 0.00 0.00 36.77 4.26
85 86 1.510383 CCTCTCACCGACAGAGCAG 59.490 63.158 0.00 0.00 36.77 4.24
86 87 1.153862 CTCTCACCGACAGAGCAGC 60.154 63.158 0.00 0.00 31.27 5.25
87 88 2.125753 CTCACCGACAGAGCAGCC 60.126 66.667 0.00 0.00 0.00 4.85
88 89 3.655810 CTCACCGACAGAGCAGCCC 62.656 68.421 0.00 0.00 0.00 5.19
89 90 4.767255 CACCGACAGAGCAGCCCC 62.767 72.222 0.00 0.00 0.00 5.80
91 92 4.767255 CCGACAGAGCAGCCCCAC 62.767 72.222 0.00 0.00 0.00 4.61
92 93 3.699894 CGACAGAGCAGCCCCACT 61.700 66.667 0.00 0.00 0.00 4.00
93 94 2.267324 GACAGAGCAGCCCCACTC 59.733 66.667 0.00 0.00 0.00 3.51
94 95 3.322318 GACAGAGCAGCCCCACTCC 62.322 68.421 0.00 0.00 33.18 3.85
95 96 4.106925 CAGAGCAGCCCCACTCCC 62.107 72.222 0.00 0.00 33.18 4.30
99 100 3.984732 GCAGCCCCACTCCCCTTT 61.985 66.667 0.00 0.00 0.00 3.11
100 101 2.854076 CAGCCCCACTCCCCTTTT 59.146 61.111 0.00 0.00 0.00 2.27
101 102 1.304464 CAGCCCCACTCCCCTTTTC 60.304 63.158 0.00 0.00 0.00 2.29
102 103 2.361230 GCCCCACTCCCCTTTTCG 60.361 66.667 0.00 0.00 0.00 3.46
103 104 2.361230 CCCCACTCCCCTTTTCGC 60.361 66.667 0.00 0.00 0.00 4.70
104 105 2.757077 CCCACTCCCCTTTTCGCT 59.243 61.111 0.00 0.00 0.00 4.93
105 106 1.074951 CCCACTCCCCTTTTCGCTT 59.925 57.895 0.00 0.00 0.00 4.68
106 107 1.244019 CCCACTCCCCTTTTCGCTTG 61.244 60.000 0.00 0.00 0.00 4.01
107 108 0.537371 CCACTCCCCTTTTCGCTTGT 60.537 55.000 0.00 0.00 0.00 3.16
108 109 0.593128 CACTCCCCTTTTCGCTTGTG 59.407 55.000 0.00 0.00 0.00 3.33
109 110 0.472471 ACTCCCCTTTTCGCTTGTGA 59.528 50.000 0.00 0.00 0.00 3.58
110 111 0.875059 CTCCCCTTTTCGCTTGTGAC 59.125 55.000 0.00 0.00 0.00 3.67
111 112 0.882927 TCCCCTTTTCGCTTGTGACG 60.883 55.000 0.00 0.00 0.00 4.35
112 113 1.574428 CCCTTTTCGCTTGTGACGG 59.426 57.895 0.00 0.00 0.00 4.79
113 114 1.082104 CCTTTTCGCTTGTGACGGC 60.082 57.895 0.00 0.00 0.00 5.68
146 147 4.329545 GGGTTCAGCTCGGGTGCA 62.330 66.667 0.00 0.00 34.99 4.57
147 148 2.045926 GGTTCAGCTCGGGTGCAT 60.046 61.111 0.00 0.00 34.99 3.96
148 149 1.675641 GGTTCAGCTCGGGTGCATT 60.676 57.895 0.00 0.00 34.99 3.56
149 150 1.503542 GTTCAGCTCGGGTGCATTG 59.496 57.895 0.00 0.00 34.99 2.82
150 151 1.675310 TTCAGCTCGGGTGCATTGG 60.675 57.895 0.00 0.00 34.99 3.16
151 152 3.818787 CAGCTCGGGTGCATTGGC 61.819 66.667 0.00 0.00 41.68 4.52
152 153 4.039092 AGCTCGGGTGCATTGGCT 62.039 61.111 0.00 0.00 41.91 4.75
153 154 3.818787 GCTCGGGTGCATTGGCTG 61.819 66.667 0.00 0.00 41.91 4.85
154 155 2.360350 CTCGGGTGCATTGGCTGT 60.360 61.111 0.00 0.00 41.91 4.40
155 156 1.973281 CTCGGGTGCATTGGCTGTT 60.973 57.895 0.00 0.00 41.91 3.16
156 157 0.676466 CTCGGGTGCATTGGCTGTTA 60.676 55.000 0.00 0.00 41.91 2.41
157 158 0.034574 TCGGGTGCATTGGCTGTTAT 60.035 50.000 0.00 0.00 41.91 1.89
158 159 0.817013 CGGGTGCATTGGCTGTTATT 59.183 50.000 0.00 0.00 41.91 1.40
159 160 1.204467 CGGGTGCATTGGCTGTTATTT 59.796 47.619 0.00 0.00 41.91 1.40
160 161 2.735126 CGGGTGCATTGGCTGTTATTTC 60.735 50.000 0.00 0.00 41.91 2.17
161 162 2.529151 GGTGCATTGGCTGTTATTTCG 58.471 47.619 0.00 0.00 41.91 3.46
162 163 2.529151 GTGCATTGGCTGTTATTTCGG 58.471 47.619 0.00 0.00 41.91 4.30
163 164 1.135141 TGCATTGGCTGTTATTTCGGC 60.135 47.619 0.00 0.00 41.91 5.54
168 169 3.713936 GCTGTTATTTCGGCCCAAC 57.286 52.632 0.00 0.00 34.02 3.77
169 170 0.172578 GCTGTTATTTCGGCCCAACC 59.827 55.000 0.00 0.00 34.02 3.77
170 171 0.815095 CTGTTATTTCGGCCCAACCC 59.185 55.000 0.00 0.00 33.26 4.11
171 172 0.112606 TGTTATTTCGGCCCAACCCA 59.887 50.000 0.00 0.00 33.26 4.51
172 173 1.258676 GTTATTTCGGCCCAACCCAA 58.741 50.000 0.00 0.00 33.26 4.12
173 174 1.067425 GTTATTTCGGCCCAACCCAAC 60.067 52.381 0.00 0.00 33.26 3.77
174 175 0.112606 TATTTCGGCCCAACCCAACA 59.887 50.000 0.00 0.00 33.26 3.33
175 176 0.760945 ATTTCGGCCCAACCCAACAA 60.761 50.000 0.00 0.00 33.26 2.83
176 177 0.976073 TTTCGGCCCAACCCAACAAA 60.976 50.000 0.00 0.00 33.26 2.83
177 178 0.976073 TTCGGCCCAACCCAACAAAA 60.976 50.000 0.00 0.00 33.26 2.44
178 179 0.976073 TCGGCCCAACCCAACAAAAA 60.976 50.000 0.00 0.00 33.26 1.94
195 196 3.904136 AAAAACAGACTCATGAAGGCG 57.096 42.857 0.00 0.00 38.46 5.52
196 197 1.160137 AAACAGACTCATGAAGGCGC 58.840 50.000 0.00 0.00 38.46 6.53
197 198 1.016130 AACAGACTCATGAAGGCGCG 61.016 55.000 0.00 0.00 38.46 6.86
198 199 1.153765 CAGACTCATGAAGGCGCGA 60.154 57.895 12.10 0.00 38.46 5.87
199 200 1.153745 AGACTCATGAAGGCGCGAC 60.154 57.895 12.10 7.34 38.46 5.19
200 201 1.153745 GACTCATGAAGGCGCGACT 60.154 57.895 9.84 9.84 0.00 4.18
201 202 1.416813 GACTCATGAAGGCGCGACTG 61.417 60.000 19.28 3.04 0.00 3.51
202 203 2.125552 TCATGAAGGCGCGACTGG 60.126 61.111 19.28 5.96 0.00 4.00
203 204 3.197790 CATGAAGGCGCGACTGGG 61.198 66.667 19.28 0.56 0.00 4.45
211 212 3.124921 CGCGACTGGGCCGATTTT 61.125 61.111 0.00 0.00 0.00 1.82
212 213 2.686816 CGCGACTGGGCCGATTTTT 61.687 57.895 0.00 0.00 0.00 1.94
213 214 1.154035 GCGACTGGGCCGATTTTTG 60.154 57.895 0.00 0.00 0.00 2.44
214 215 1.154035 CGACTGGGCCGATTTTTGC 60.154 57.895 0.00 0.00 0.00 3.68
215 216 1.861542 CGACTGGGCCGATTTTTGCA 61.862 55.000 0.00 0.00 0.00 4.08
216 217 0.532115 GACTGGGCCGATTTTTGCAT 59.468 50.000 0.00 0.00 0.00 3.96
217 218 0.247185 ACTGGGCCGATTTTTGCATG 59.753 50.000 0.00 0.00 0.00 4.06
218 219 1.079266 TGGGCCGATTTTTGCATGC 60.079 52.632 11.82 11.82 0.00 4.06
219 220 1.815003 GGGCCGATTTTTGCATGCC 60.815 57.895 16.68 0.00 38.16 4.40
220 221 2.166579 GGCCGATTTTTGCATGCCG 61.167 57.895 16.68 10.05 0.00 5.69
221 222 1.153862 GCCGATTTTTGCATGCCGA 60.154 52.632 16.68 0.11 0.00 5.54
222 223 1.413008 GCCGATTTTTGCATGCCGAC 61.413 55.000 16.68 0.00 0.00 4.79
223 224 0.109365 CCGATTTTTGCATGCCGACA 60.109 50.000 16.68 0.00 0.00 4.35
224 225 0.984109 CGATTTTTGCATGCCGACAC 59.016 50.000 16.68 1.63 0.00 3.67
225 226 1.401409 CGATTTTTGCATGCCGACACT 60.401 47.619 16.68 0.00 0.00 3.55
226 227 2.159585 CGATTTTTGCATGCCGACACTA 60.160 45.455 16.68 0.00 0.00 2.74
227 228 3.669290 CGATTTTTGCATGCCGACACTAA 60.669 43.478 16.68 0.00 0.00 2.24
228 229 3.717400 TTTTTGCATGCCGACACTAAA 57.283 38.095 16.68 4.00 0.00 1.85
229 230 3.717400 TTTTGCATGCCGACACTAAAA 57.283 38.095 16.68 10.29 0.00 1.52
230 231 3.717400 TTTGCATGCCGACACTAAAAA 57.283 38.095 16.68 2.43 0.00 1.94
247 248 2.882927 AAAAACGTCTGAAAAGGGCC 57.117 45.000 0.00 0.00 0.00 5.80
248 249 2.067365 AAAACGTCTGAAAAGGGCCT 57.933 45.000 0.00 0.00 0.00 5.19
249 250 1.605753 AAACGTCTGAAAAGGGCCTC 58.394 50.000 6.46 0.00 0.00 4.70
250 251 0.765510 AACGTCTGAAAAGGGCCTCT 59.234 50.000 6.46 0.00 0.00 3.69
251 252 0.765510 ACGTCTGAAAAGGGCCTCTT 59.234 50.000 6.46 0.00 37.28 2.85
252 253 1.160137 CGTCTGAAAAGGGCCTCTTG 58.840 55.000 6.46 0.00 35.55 3.02
253 254 1.539157 GTCTGAAAAGGGCCTCTTGG 58.461 55.000 6.46 0.00 35.55 3.61
254 255 0.405585 TCTGAAAAGGGCCTCTTGGG 59.594 55.000 6.46 0.00 35.55 4.12
255 256 0.405585 CTGAAAAGGGCCTCTTGGGA 59.594 55.000 6.46 0.00 35.55 4.37
256 257 0.405585 TGAAAAGGGCCTCTTGGGAG 59.594 55.000 6.46 0.00 39.18 4.30
257 258 0.967887 GAAAAGGGCCTCTTGGGAGC 60.968 60.000 6.46 0.00 38.21 4.70
258 259 2.771328 AAAAGGGCCTCTTGGGAGCG 62.771 60.000 6.46 0.00 38.21 5.03
269 270 4.008933 GGGAGCGCGGCTGGATAT 62.009 66.667 8.83 0.00 39.88 1.63
270 271 2.740055 GGAGCGCGGCTGGATATG 60.740 66.667 8.83 0.00 39.88 1.78
271 272 3.418068 GAGCGCGGCTGGATATGC 61.418 66.667 8.83 0.00 39.88 3.14
272 273 3.873026 GAGCGCGGCTGGATATGCT 62.873 63.158 8.83 0.00 39.88 3.79
276 277 0.038251 CGCGGCTGGATATGCTCTAA 60.038 55.000 0.00 0.00 0.00 2.10
303 304 3.682292 AACCCAAGAGGCGGCGATC 62.682 63.158 12.98 7.90 40.58 3.69
304 305 4.918201 CCCAAGAGGCGGCGATCC 62.918 72.222 12.98 2.41 0.00 3.36
316 317 1.226717 GCGATCCGTGACCTGAGAC 60.227 63.158 0.00 0.00 0.00 3.36
326 327 2.287103 GTGACCTGAGACGACCAAAAAC 59.713 50.000 0.00 0.00 0.00 2.43
369 370 5.523188 TGTAGTTTGCCAATGCTTTCTTTTG 59.477 36.000 0.00 0.00 38.71 2.44
377 378 4.273969 CCAATGCTTTCTTTTGTTGCATGT 59.726 37.500 0.00 0.00 42.57 3.21
387 388 5.762711 TCTTTTGTTGCATGTACTCTGCTTA 59.237 36.000 17.85 7.18 40.34 3.09
391 392 6.182039 TGTTGCATGTACTCTGCTTATTTC 57.818 37.500 17.85 6.62 40.34 2.17
392 393 5.939883 TGTTGCATGTACTCTGCTTATTTCT 59.060 36.000 17.85 0.00 40.34 2.52
422 423 7.171167 TGTTTTGGCTTCAATGTTTCACATATG 59.829 33.333 0.00 0.00 37.97 1.78
423 424 4.746729 TGGCTTCAATGTTTCACATATGC 58.253 39.130 1.58 0.00 37.97 3.14
454 455 7.750458 AGAAACTAATAATGTGAATGTTGTGCG 59.250 33.333 0.00 0.00 0.00 5.34
455 456 6.494893 ACTAATAATGTGAATGTTGTGCGT 57.505 33.333 0.00 0.00 0.00 5.24
456 457 7.603963 ACTAATAATGTGAATGTTGTGCGTA 57.396 32.000 0.00 0.00 0.00 4.42
458 459 8.335356 ACTAATAATGTGAATGTTGTGCGTATC 58.665 33.333 0.00 0.00 0.00 2.24
459 460 6.925610 ATAATGTGAATGTTGTGCGTATCT 57.074 33.333 0.00 0.00 0.00 1.98
460 461 8.432110 AATAATGTGAATGTTGTGCGTATCTA 57.568 30.769 0.00 0.00 0.00 1.98
461 462 5.718649 ATGTGAATGTTGTGCGTATCTAC 57.281 39.130 0.00 0.00 0.00 2.59
462 463 4.561105 TGTGAATGTTGTGCGTATCTACA 58.439 39.130 0.00 0.00 0.00 2.74
463 464 5.175127 TGTGAATGTTGTGCGTATCTACAT 58.825 37.500 0.00 0.00 34.09 2.29
464 465 5.641636 TGTGAATGTTGTGCGTATCTACATT 59.358 36.000 12.24 12.24 41.21 2.71
465 466 5.959527 GTGAATGTTGTGCGTATCTACATTG 59.040 40.000 15.22 0.00 39.69 2.82
466 467 4.536364 ATGTTGTGCGTATCTACATTGC 57.464 40.909 0.00 0.00 30.05 3.56
467 468 2.347150 TGTTGTGCGTATCTACATTGCG 59.653 45.455 0.00 0.00 0.00 4.85
504 581 9.874215 CTTTTTACTTAAAAACTACTCCCTTCG 57.126 33.333 3.29 0.00 39.46 3.79
505 582 8.962884 TTTTACTTAAAAACTACTCCCTTCGT 57.037 30.769 0.00 0.00 32.05 3.85
506 583 8.962884 TTTACTTAAAAACTACTCCCTTCGTT 57.037 30.769 0.00 0.00 0.00 3.85
507 584 8.962884 TTACTTAAAAACTACTCCCTTCGTTT 57.037 30.769 0.00 0.00 0.00 3.60
508 585 7.870509 ACTTAAAAACTACTCCCTTCGTTTT 57.129 32.000 0.00 0.00 40.20 2.43
509 586 8.962884 ACTTAAAAACTACTCCCTTCGTTTTA 57.037 30.769 0.00 0.00 38.27 1.52
510 587 9.394767 ACTTAAAAACTACTCCCTTCGTTTTAA 57.605 29.630 0.00 0.00 38.27 1.52
516 593 9.783081 AAACTACTCCCTTCGTTTTAAAATAGA 57.217 29.630 3.52 4.62 0.00 1.98
517 594 9.955102 AACTACTCCCTTCGTTTTAAAATAGAT 57.045 29.630 3.52 0.00 0.00 1.98
518 595 9.379791 ACTACTCCCTTCGTTTTAAAATAGATG 57.620 33.333 3.52 8.94 0.00 2.90
519 596 9.595823 CTACTCCCTTCGTTTTAAAATAGATGA 57.404 33.333 3.52 4.51 0.00 2.92
520 597 8.265165 ACTCCCTTCGTTTTAAAATAGATGAC 57.735 34.615 3.52 0.00 0.00 3.06
521 598 8.101419 ACTCCCTTCGTTTTAAAATAGATGACT 58.899 33.333 3.52 0.00 0.00 3.41
522 599 8.488651 TCCCTTCGTTTTAAAATAGATGACTC 57.511 34.615 3.52 0.00 0.00 3.36
523 600 8.098286 TCCCTTCGTTTTAAAATAGATGACTCA 58.902 33.333 3.52 0.00 0.00 3.41
524 601 8.726988 CCCTTCGTTTTAAAATAGATGACTCAA 58.273 33.333 3.52 0.00 0.00 3.02
525 602 9.543018 CCTTCGTTTTAAAATAGATGACTCAAC 57.457 33.333 3.52 0.00 0.00 3.18
538 615 7.118496 AGATGACTCAACTTTATACTGAGGG 57.882 40.000 3.59 0.00 40.77 4.30
539 616 6.897966 AGATGACTCAACTTTATACTGAGGGA 59.102 38.462 3.59 0.00 40.77 4.20
540 617 6.531503 TGACTCAACTTTATACTGAGGGAG 57.468 41.667 3.59 0.00 40.77 4.30
581 658 3.943671 TTTTCCCTTTGAGGACAGTCA 57.056 42.857 2.17 0.00 37.67 3.41
582 659 4.453480 TTTTCCCTTTGAGGACAGTCAT 57.547 40.909 2.17 0.00 37.67 3.06
587 664 5.947663 TCCCTTTGAGGACAGTCATTTTTA 58.052 37.500 2.17 0.00 37.67 1.52
592 669 9.846248 CCTTTGAGGACAGTCATTTTTATTTAG 57.154 33.333 2.17 0.00 37.67 1.85
594 671 7.938140 TGAGGACAGTCATTTTTATTTAGGG 57.062 36.000 2.17 0.00 0.00 3.53
596 673 7.829211 TGAGGACAGTCATTTTTATTTAGGGAG 59.171 37.037 2.17 0.00 0.00 4.30
597 674 7.119387 AGGACAGTCATTTTTATTTAGGGAGG 58.881 38.462 2.17 0.00 0.00 4.30
598 675 6.890268 GGACAGTCATTTTTATTTAGGGAGGT 59.110 38.462 2.17 0.00 0.00 3.85
599 676 7.396339 GGACAGTCATTTTTATTTAGGGAGGTT 59.604 37.037 2.17 0.00 0.00 3.50
600 677 8.721133 ACAGTCATTTTTATTTAGGGAGGTTT 57.279 30.769 0.00 0.00 0.00 3.27
601 678 9.816787 ACAGTCATTTTTATTTAGGGAGGTTTA 57.183 29.630 0.00 0.00 0.00 2.01
608 685 8.873186 TTTTATTTAGGGAGGTTTAAGGACAG 57.127 34.615 0.00 0.00 0.00 3.51
611 688 2.986050 AGGGAGGTTTAAGGACAGTCA 58.014 47.619 2.17 0.00 0.00 3.41
615 692 5.077564 GGGAGGTTTAAGGACAGTCATTTT 58.922 41.667 5.64 0.00 0.00 1.82
631 708 9.816787 ACAGTCATTTTTATTTAGGGAGGTTTA 57.183 29.630 0.00 0.00 0.00 2.01
675 776 4.566987 AGAATCGGACAGTCCTTTTGTAC 58.433 43.478 17.95 3.02 33.30 2.90
679 780 1.798813 GGACAGTCCTTTTGTACGCTG 59.201 52.381 12.94 0.00 32.53 5.18
681 782 0.517316 CAGTCCTTTTGTACGCTGGC 59.483 55.000 0.00 0.00 0.00 4.85
685 786 2.281208 TTTTGTACGCTGGCGCCT 60.281 55.556 29.70 9.99 44.19 5.52
686 787 2.240612 CTTTTGTACGCTGGCGCCTC 62.241 60.000 29.70 18.20 44.19 4.70
687 788 2.997952 TTTTGTACGCTGGCGCCTCA 62.998 55.000 29.70 7.24 44.19 3.86
767 870 1.377202 GGCTGAACAGGCCGAATCA 60.377 57.895 15.84 1.82 46.99 2.57
768 871 1.648467 GGCTGAACAGGCCGAATCAC 61.648 60.000 15.84 0.00 46.99 3.06
769 872 0.955428 GCTGAACAGGCCGAATCACA 60.955 55.000 0.00 0.00 0.00 3.58
770 873 1.742761 CTGAACAGGCCGAATCACAT 58.257 50.000 0.00 0.00 0.00 3.21
771 874 2.086869 CTGAACAGGCCGAATCACATT 58.913 47.619 0.00 0.00 0.00 2.71
772 875 1.811965 TGAACAGGCCGAATCACATTG 59.188 47.619 0.00 0.00 0.00 2.82
773 876 1.133025 GAACAGGCCGAATCACATTGG 59.867 52.381 0.00 0.00 0.00 3.16
774 877 1.315257 ACAGGCCGAATCACATTGGC 61.315 55.000 0.00 0.00 46.82 4.52
776 879 4.792106 GCCGAATCACATTGGCAC 57.208 55.556 0.65 0.00 46.76 5.01
777 880 1.139520 GCCGAATCACATTGGCACC 59.860 57.895 0.65 0.00 46.76 5.01
778 881 1.809207 CCGAATCACATTGGCACCC 59.191 57.895 0.00 0.00 0.00 4.61
779 882 1.666209 CCGAATCACATTGGCACCCC 61.666 60.000 0.00 0.00 0.00 4.95
780 883 0.680921 CGAATCACATTGGCACCCCT 60.681 55.000 0.00 0.00 0.00 4.79
781 884 1.106285 GAATCACATTGGCACCCCTC 58.894 55.000 0.00 0.00 0.00 4.30
782 885 0.409092 AATCACATTGGCACCCCTCA 59.591 50.000 0.00 0.00 0.00 3.86
783 886 0.409092 ATCACATTGGCACCCCTCAA 59.591 50.000 0.00 0.00 0.00 3.02
784 887 0.187117 TCACATTGGCACCCCTCAAA 59.813 50.000 0.00 0.00 0.00 2.69
785 888 1.047002 CACATTGGCACCCCTCAAAA 58.953 50.000 0.00 0.00 0.00 2.44
786 889 1.415659 CACATTGGCACCCCTCAAAAA 59.584 47.619 0.00 0.00 0.00 1.94
1166 1280 1.869452 ACTCCCCCTCTCTCCCCTT 60.869 63.158 0.00 0.00 0.00 3.95
1186 1300 3.114616 CCAAGGTGAGCGCACTCG 61.115 66.667 20.23 8.72 46.69 4.18
1207 1321 1.407979 TCTTATCCCGTTCTCTTCCGC 59.592 52.381 0.00 0.00 0.00 5.54
1264 1378 8.025243 TCACGAAACCTGTAATATTTGTTCTC 57.975 34.615 0.00 0.00 0.00 2.87
1277 1391 7.948278 ATATTTGTTCTCGGTAGCTTATGTC 57.052 36.000 0.00 0.00 0.00 3.06
1310 1424 5.586243 AGAAATGTCCGTGTTCCTCAATATG 59.414 40.000 0.00 0.00 0.00 1.78
1314 1428 4.000988 GTCCGTGTTCCTCAATATGTTGT 58.999 43.478 1.86 0.00 36.69 3.32
1362 1476 8.248117 GATGAAACATTTTTCTTCCCATCTTG 57.752 34.615 5.95 0.00 41.64 3.02
1366 1480 8.477419 AAACATTTTTCTTCCCATCTTGTAGA 57.523 30.769 0.00 0.00 0.00 2.59
1372 1486 8.477419 TTTTCTTCCCATCTTGTAGACATTTT 57.523 30.769 0.00 0.00 0.00 1.82
1402 1517 2.897326 GCCCTCTTGTGTTGGGTTATTT 59.103 45.455 0.00 0.00 42.77 1.40
1419 1534 3.624326 ATTTGTGATGTGTGGTGTTCG 57.376 42.857 0.00 0.00 0.00 3.95
1421 1536 0.179234 TGTGATGTGTGGTGTTCGGT 59.821 50.000 0.00 0.00 0.00 4.69
1445 1560 3.795826 GCTTCATACTGATCGTAGCGGTT 60.796 47.826 0.00 0.00 0.00 4.44
1556 1676 4.469657 ACAGGTTTCACTGCTTCCATTTA 58.530 39.130 0.00 0.00 42.21 1.40
1558 1678 5.539955 ACAGGTTTCACTGCTTCCATTTATT 59.460 36.000 0.00 0.00 42.21 1.40
1559 1679 6.041979 ACAGGTTTCACTGCTTCCATTTATTT 59.958 34.615 0.00 0.00 42.21 1.40
1560 1680 7.232534 ACAGGTTTCACTGCTTCCATTTATTTA 59.767 33.333 0.00 0.00 42.21 1.40
1594 1714 9.946165 TGTGTAACTTCTATGTAATACTCGATG 57.054 33.333 0.00 0.00 38.04 3.84
1608 1728 9.197694 GTAATACTCGATGATGTCAAGCTTAAT 57.802 33.333 0.00 0.00 0.00 1.40
1622 1742 8.573035 TGTCAAGCTTAATTTTGTTAAGGGTAG 58.427 33.333 0.00 0.00 33.72 3.18
1624 1744 9.357161 TCAAGCTTAATTTTGTTAAGGGTAGAA 57.643 29.630 0.00 0.00 33.72 2.10
1642 1762 9.453830 AGGGTAGAATTTCCTAGATATTCACTT 57.546 33.333 9.45 0.00 34.21 3.16
1660 1780 8.682936 ATTCACTTCTTGATATACCATGGAAC 57.317 34.615 21.47 5.18 32.84 3.62
1661 1781 6.591935 TCACTTCTTGATATACCATGGAACC 58.408 40.000 21.47 3.15 0.00 3.62
1662 1782 6.386927 TCACTTCTTGATATACCATGGAACCT 59.613 38.462 21.47 0.00 0.00 3.50
1663 1783 7.567250 TCACTTCTTGATATACCATGGAACCTA 59.433 37.037 21.47 0.00 0.00 3.08
1664 1784 7.657761 CACTTCTTGATATACCATGGAACCTAC 59.342 40.741 21.47 5.74 0.00 3.18
1665 1785 7.569111 ACTTCTTGATATACCATGGAACCTACT 59.431 37.037 21.47 0.00 0.00 2.57
1666 1786 7.540474 TCTTGATATACCATGGAACCTACTC 57.460 40.000 21.47 6.14 0.00 2.59
1667 1787 6.497259 TCTTGATATACCATGGAACCTACTCC 59.503 42.308 21.47 0.00 35.88 3.85
1675 1795 3.769189 TGGAACCTACTCCACTATGGA 57.231 47.619 0.00 0.00 45.98 3.41
1689 1809 7.331089 TCCACTATGGAGTAGAAGCTATAGA 57.669 40.000 3.21 0.00 42.67 1.98
1690 1810 7.169591 TCCACTATGGAGTAGAAGCTATAGAC 58.830 42.308 3.21 0.00 42.67 2.59
1691 1811 6.376018 CCACTATGGAGTAGAAGCTATAGACC 59.624 46.154 3.21 0.00 40.96 3.85
1692 1812 6.943146 CACTATGGAGTAGAAGCTATAGACCA 59.057 42.308 3.21 0.00 33.32 4.02
1693 1813 7.120579 CACTATGGAGTAGAAGCTATAGACCAG 59.879 44.444 3.21 0.00 33.32 4.00
1694 1814 5.648330 TGGAGTAGAAGCTATAGACCAGA 57.352 43.478 3.21 0.00 0.00 3.86
1695 1815 5.626142 TGGAGTAGAAGCTATAGACCAGAG 58.374 45.833 3.21 0.00 0.00 3.35
1696 1816 5.369993 TGGAGTAGAAGCTATAGACCAGAGA 59.630 44.000 3.21 0.00 0.00 3.10
1697 1817 6.126449 TGGAGTAGAAGCTATAGACCAGAGAA 60.126 42.308 3.21 0.00 0.00 2.87
1698 1818 6.946009 GGAGTAGAAGCTATAGACCAGAGAAT 59.054 42.308 3.21 0.00 0.00 2.40
1699 1819 7.450323 GGAGTAGAAGCTATAGACCAGAGAATT 59.550 40.741 3.21 0.00 0.00 2.17
1700 1820 9.509956 GAGTAGAAGCTATAGACCAGAGAATTA 57.490 37.037 3.21 0.00 0.00 1.40
1701 1821 9.515226 AGTAGAAGCTATAGACCAGAGAATTAG 57.485 37.037 3.21 0.00 0.00 1.73
1722 1842 7.916914 TTAGTTTTAAGATGTACCAGAAGGC 57.083 36.000 0.00 0.00 39.06 4.35
1723 1843 5.876357 AGTTTTAAGATGTACCAGAAGGCA 58.124 37.500 0.00 0.00 39.06 4.75
1724 1844 5.940470 AGTTTTAAGATGTACCAGAAGGCAG 59.060 40.000 0.00 0.00 39.06 4.85
1725 1845 5.755409 TTTAAGATGTACCAGAAGGCAGA 57.245 39.130 0.00 0.00 39.06 4.26
1726 1846 5.755409 TTAAGATGTACCAGAAGGCAGAA 57.245 39.130 0.00 0.00 39.06 3.02
1727 1847 3.902881 AGATGTACCAGAAGGCAGAAG 57.097 47.619 0.00 0.00 39.06 2.85
1728 1848 2.093235 AGATGTACCAGAAGGCAGAAGC 60.093 50.000 0.00 0.00 39.06 3.86
1748 1868 4.907809 AGCCCTCTTTGGTTAGTTTAGTC 58.092 43.478 0.00 0.00 0.00 2.59
1766 1886 2.373502 AGTCCTTCTCCCCAACTTCTTG 59.626 50.000 0.00 0.00 0.00 3.02
1782 1905 6.442513 ACTTCTTGTATATGCAAAAGCTCC 57.557 37.500 18.76 0.00 0.00 4.70
1786 1909 6.855836 TCTTGTATATGCAAAAGCTCCTTTG 58.144 36.000 7.66 6.52 38.97 2.77
1800 1923 3.118775 GCTCCTTTGTGGTGAACCTTTTT 60.119 43.478 0.37 0.00 37.07 1.94
1815 1938 6.039941 TGAACCTTTTTGATTTACGACACCAT 59.960 34.615 0.00 0.00 0.00 3.55
1816 1939 6.399639 ACCTTTTTGATTTACGACACCATT 57.600 33.333 0.00 0.00 0.00 3.16
1849 2003 9.618890 CATCTAATGACTTTAGGAGATTCCAAA 57.381 33.333 7.94 0.00 39.61 3.28
1886 2047 2.797177 TGCCCATGCACATAGTACAA 57.203 45.000 0.00 0.00 44.23 2.41
1937 2099 9.120538 GAAGACCAGTGCTATTTTTGGATATAA 57.879 33.333 0.00 0.00 34.76 0.98
1970 2132 6.072508 TCCAGTGTGAATTAGCACTTTGAATC 60.073 38.462 10.58 0.00 43.27 2.52
1972 2134 5.088739 GTGTGAATTAGCACTTTGAATCCG 58.911 41.667 0.00 0.00 39.49 4.18
1973 2135 5.000591 TGTGAATTAGCACTTTGAATCCGA 58.999 37.500 0.00 0.00 39.49 4.55
1974 2136 5.647658 TGTGAATTAGCACTTTGAATCCGAT 59.352 36.000 0.00 0.00 39.49 4.18
1987 2150 9.784531 ACTTTGAATCCGATACATTGAGATATT 57.215 29.630 0.00 0.00 0.00 1.28
2006 2169 2.837532 TGAAAAGGGGCAAATGCTTC 57.162 45.000 5.25 1.78 41.70 3.86
2009 2172 1.917872 AAAGGGGCAAATGCTTCGTA 58.082 45.000 5.25 0.00 41.70 3.43
2018 2181 3.121025 GCAAATGCTTCGTAAACAAAGCC 60.121 43.478 3.48 0.00 37.46 4.35
2019 2182 4.047822 CAAATGCTTCGTAAACAAAGCCA 58.952 39.130 3.48 0.00 37.46 4.75
2020 2183 4.519540 AATGCTTCGTAAACAAAGCCAT 57.480 36.364 3.48 0.00 37.46 4.40
2023 2186 4.980590 TGCTTCGTAAACAAAGCCATATG 58.019 39.130 3.48 0.00 37.46 1.78
2024 2187 4.697828 TGCTTCGTAAACAAAGCCATATGA 59.302 37.500 3.65 0.00 37.46 2.15
2025 2188 5.356751 TGCTTCGTAAACAAAGCCATATGAT 59.643 36.000 3.65 0.00 37.46 2.45
2026 2189 5.682862 GCTTCGTAAACAAAGCCATATGATG 59.317 40.000 3.65 0.55 32.45 3.07
2027 2190 6.458206 GCTTCGTAAACAAAGCCATATGATGA 60.458 38.462 3.65 0.00 32.45 2.92
2028 2191 6.993786 TCGTAAACAAAGCCATATGATGAA 57.006 33.333 3.65 0.00 0.00 2.57
2030 2193 7.995289 TCGTAAACAAAGCCATATGATGAAAT 58.005 30.769 3.65 0.00 0.00 2.17
2031 2194 7.914871 TCGTAAACAAAGCCATATGATGAAATG 59.085 33.333 3.65 0.00 0.00 2.32
2032 2195 7.701924 CGTAAACAAAGCCATATGATGAAATGT 59.298 33.333 3.65 0.00 0.00 2.71
2034 2197 7.837202 AACAAAGCCATATGATGAAATGTTG 57.163 32.000 3.65 0.26 0.00 3.33
2063 2237 3.755112 TCCTGACAAATACACCGAACA 57.245 42.857 0.00 0.00 0.00 3.18
2070 2244 6.693466 TGACAAATACACCGAACAGAAGATA 58.307 36.000 0.00 0.00 0.00 1.98
2074 2248 8.504005 ACAAATACACCGAACAGAAGATAAAAG 58.496 33.333 0.00 0.00 0.00 2.27
2084 2258 9.329913 CGAACAGAAGATAAAAGGTAAAACATG 57.670 33.333 0.00 0.00 0.00 3.21
2096 2270 4.288626 AGGTAAAACATGCCTTGACCTAGA 59.711 41.667 13.41 0.00 42.17 2.43
2162 2336 7.636259 TTTCACGCTTTATTTTGAGATTTGG 57.364 32.000 0.00 0.00 0.00 3.28
2201 2375 6.823286 TGAACATGATATTTCCCCTAGTGA 57.177 37.500 0.00 0.00 0.00 3.41
2208 2383 7.303182 TGATATTTCCCCTAGTGACATACAG 57.697 40.000 0.00 0.00 0.00 2.74
2209 2384 6.844388 TGATATTTCCCCTAGTGACATACAGT 59.156 38.462 0.00 0.00 36.09 3.55
2210 2385 4.819105 TTTCCCCTAGTGACATACAGTG 57.181 45.455 0.00 0.00 33.78 3.66
2325 2506 6.320164 AGTCATCTAGCACGAAATCTACTCTT 59.680 38.462 0.00 0.00 0.00 2.85
2326 2507 6.635239 GTCATCTAGCACGAAATCTACTCTTC 59.365 42.308 0.00 0.00 0.00 2.87
2509 2690 8.447924 AGAATGGATCAGATGTTGAGTTATTG 57.552 34.615 0.00 0.00 39.68 1.90
2515 2696 7.011857 GGATCAGATGTTGAGTTATTGGAGAAC 59.988 40.741 0.00 0.00 39.68 3.01
2518 2699 3.071479 TGTTGAGTTATTGGAGAACGCC 58.929 45.455 0.00 0.00 31.85 5.68
2581 2762 2.896044 TGCATTTGGTGAGCCACATAAA 59.104 40.909 7.49 7.99 46.01 1.40
2582 2763 3.253230 GCATTTGGTGAGCCACATAAAC 58.747 45.455 7.49 0.00 46.01 2.01
2585 2766 5.540911 CATTTGGTGAGCCACATAAACTTT 58.459 37.500 7.49 0.00 46.01 2.66
2586 2767 5.606348 TTTGGTGAGCCACATAAACTTTT 57.394 34.783 7.49 0.00 46.01 2.27
2587 2768 4.846779 TGGTGAGCCACATAAACTTTTC 57.153 40.909 7.49 0.00 40.46 2.29
2590 2771 4.518970 GGTGAGCCACATAAACTTTTCAGA 59.481 41.667 7.49 0.00 35.86 3.27
2591 2772 5.335191 GGTGAGCCACATAAACTTTTCAGAG 60.335 44.000 7.49 0.00 35.86 3.35
2626 2807 6.996282 TCTTTTGAACTTCCGTAGATTTTCCT 59.004 34.615 0.00 0.00 0.00 3.36
2783 2967 7.500892 TGCTTTATCTGTCCAGTTTCTTGTTTA 59.499 33.333 0.00 0.00 0.00 2.01
2932 3116 7.136119 GTGTTAGCTGCAGTTAAACAATGTAA 58.864 34.615 22.58 0.00 0.00 2.41
2948 3132 6.906659 ACAATGTAAGAAGTTTGAGCATCTG 58.093 36.000 0.00 0.00 34.92 2.90
2959 3143 6.105333 AGTTTGAGCATCTGTCTATCTGTTC 58.895 40.000 0.00 0.00 34.92 3.18
3018 3206 5.003160 TCAGTGTCAAGATACCATTTGTGG 58.997 41.667 0.00 0.00 0.00 4.17
3185 3375 2.942804 TCCATTCTTTGTGACCTTGCA 58.057 42.857 0.00 0.00 0.00 4.08
3221 3411 5.687780 ACCAATCAGATACTCATGCATTGA 58.312 37.500 0.00 0.00 0.00 2.57
3257 3448 3.056179 TCTGTTATCAGGTGTCGCAATCA 60.056 43.478 1.00 0.00 41.59 2.57
3335 3526 2.105466 CAGCAGCGAGGAGGAAAGC 61.105 63.158 0.00 0.00 0.00 3.51
3422 3613 6.708502 TCCATCTATCAAAGTGTTTCAACGAA 59.291 34.615 0.00 0.00 0.00 3.85
3457 3648 7.053498 TGGTCAGTATTAGCATAAATCTTGCA 58.947 34.615 0.00 0.00 42.62 4.08
3565 3756 9.353999 CTTAATTACAACTTGCTTATCCCAAAC 57.646 33.333 0.00 0.00 0.00 2.93
3566 3757 6.909550 ATTACAACTTGCTTATCCCAAACA 57.090 33.333 0.00 0.00 0.00 2.83
3570 3793 1.539388 CTTGCTTATCCCAAACACGCA 59.461 47.619 0.00 0.00 0.00 5.24
3574 3797 2.745281 GCTTATCCCAAACACGCACTTA 59.255 45.455 0.00 0.00 0.00 2.24
3575 3798 3.377172 GCTTATCCCAAACACGCACTTAT 59.623 43.478 0.00 0.00 0.00 1.73
3576 3799 4.730613 GCTTATCCCAAACACGCACTTATG 60.731 45.833 0.00 0.00 0.00 1.90
3577 3800 2.264005 TCCCAAACACGCACTTATGT 57.736 45.000 0.00 0.00 0.00 2.29
3593 3818 7.588854 CGCACTTATGTTTTTCATCTGATATGG 59.411 37.037 0.00 0.00 37.91 2.74
3627 3852 7.346695 CACTTGCTGAACAAAATGGTTTTATG 58.653 34.615 0.00 0.00 37.96 1.90
3661 3886 7.750229 ATAGCAACCCACATATAATGAACAG 57.250 36.000 0.00 0.00 0.00 3.16
3665 3890 6.513393 GCAACCCACATATAATGAACAGTAGC 60.513 42.308 0.00 0.00 0.00 3.58
3679 3907 9.624373 AATGAACAGTAGCAAGATCATAGAATT 57.376 29.630 0.00 0.00 0.00 2.17
3680 3908 9.624373 ATGAACAGTAGCAAGATCATAGAATTT 57.376 29.630 0.00 0.00 0.00 1.82
3681 3909 9.453572 TGAACAGTAGCAAGATCATAGAATTTT 57.546 29.630 0.00 0.00 0.00 1.82
3736 3965 2.284417 GGTCGAGAACAGTTGAACACAC 59.716 50.000 0.00 0.00 0.00 3.82
3780 4012 7.375053 TGAACTTGGTTAGTTTCAAATATGGC 58.625 34.615 0.00 0.00 47.00 4.40
3859 4091 2.047179 GCGGTCCCTGTTGGTCTC 60.047 66.667 0.00 0.00 34.77 3.36
3931 4163 2.046892 ATGCTGTGGTCAGACGCC 60.047 61.111 0.00 0.00 43.76 5.68
3947 4179 2.260869 GCCGCTCAGCACCAAGAAA 61.261 57.895 0.00 0.00 0.00 2.52
3949 4181 0.886490 CCGCTCAGCACCAAGAAACT 60.886 55.000 0.00 0.00 0.00 2.66
3971 4203 3.003478 GGCAACGCGGATAGTTCG 58.997 61.111 12.47 0.00 0.00 3.95
3974 4206 0.569349 GCAACGCGGATAGTTCGTAC 59.431 55.000 12.47 0.00 35.18 3.67
3983 4215 5.909054 CGCGGATAGTTCGTACTAATTTGTA 59.091 40.000 5.98 0.00 40.14 2.41
4034 4266 2.353406 ACTTTTCCAAGAGCATGCATGC 60.353 45.455 38.60 38.60 42.56 4.06
4051 4285 3.185188 GCATGCATACGTAGTCCAATCAG 59.815 47.826 14.21 0.00 43.93 2.90
4099 4346 9.617975 GAGATGGTATAATACACGTAACTAACC 57.382 37.037 0.00 0.00 0.00 2.85
4101 4348 9.185192 GATGGTATAATACACGTAACTAACCAC 57.815 37.037 6.54 0.40 36.21 4.16
4122 4369 9.483916 AACCACTTGGCTTTGTTTTTATATTAC 57.516 29.630 0.00 0.00 39.32 1.89
4123 4370 8.866093 ACCACTTGGCTTTGTTTTTATATTACT 58.134 29.630 0.00 0.00 39.32 2.24
4147 4399 9.699703 ACTACTAAAGTAAAGCAAAGAGAGAAG 57.300 33.333 0.00 0.00 36.36 2.85
4187 4439 0.824109 CCTGGACGCAGAAGATGGTA 59.176 55.000 0.00 0.00 0.00 3.25
4607 4871 1.621992 TCTCCTTCTTGCTCGTCAGT 58.378 50.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.312890 TCTCATTCTCTCCATTCCTCCC 58.687 50.000 0.00 0.00 0.00 4.30
1 2 3.324556 CCTCTCATTCTCTCCATTCCTCC 59.675 52.174 0.00 0.00 0.00 4.30
2 3 3.324556 CCCTCTCATTCTCTCCATTCCTC 59.675 52.174 0.00 0.00 0.00 3.71
3 4 3.051496 TCCCTCTCATTCTCTCCATTCCT 60.051 47.826 0.00 0.00 0.00 3.36
4 5 3.312890 TCCCTCTCATTCTCTCCATTCC 58.687 50.000 0.00 0.00 0.00 3.01
5 6 4.743348 GCTTCCCTCTCATTCTCTCCATTC 60.743 50.000 0.00 0.00 0.00 2.67
6 7 3.136260 GCTTCCCTCTCATTCTCTCCATT 59.864 47.826 0.00 0.00 0.00 3.16
7 8 2.705127 GCTTCCCTCTCATTCTCTCCAT 59.295 50.000 0.00 0.00 0.00 3.41
8 9 2.114616 GCTTCCCTCTCATTCTCTCCA 58.885 52.381 0.00 0.00 0.00 3.86
9 10 1.416030 GGCTTCCCTCTCATTCTCTCC 59.584 57.143 0.00 0.00 0.00 3.71
10 11 2.102925 CTGGCTTCCCTCTCATTCTCTC 59.897 54.545 0.00 0.00 0.00 3.20
11 12 2.117865 CTGGCTTCCCTCTCATTCTCT 58.882 52.381 0.00 0.00 0.00 3.10
12 13 1.140652 CCTGGCTTCCCTCTCATTCTC 59.859 57.143 0.00 0.00 0.00 2.87
13 14 1.211456 CCTGGCTTCCCTCTCATTCT 58.789 55.000 0.00 0.00 0.00 2.40
14 15 1.140652 CTCCTGGCTTCCCTCTCATTC 59.859 57.143 0.00 0.00 0.00 2.67
15 16 1.211456 CTCCTGGCTTCCCTCTCATT 58.789 55.000 0.00 0.00 0.00 2.57
16 17 0.693767 CCTCCTGGCTTCCCTCTCAT 60.694 60.000 0.00 0.00 0.00 2.90
17 18 1.306482 CCTCCTGGCTTCCCTCTCA 60.306 63.158 0.00 0.00 0.00 3.27
18 19 0.618968 TTCCTCCTGGCTTCCCTCTC 60.619 60.000 0.00 0.00 0.00 3.20
19 20 0.178861 TTTCCTCCTGGCTTCCCTCT 60.179 55.000 0.00 0.00 0.00 3.69
20 21 0.254462 CTTTCCTCCTGGCTTCCCTC 59.746 60.000 0.00 0.00 0.00 4.30
21 22 1.857638 GCTTTCCTCCTGGCTTCCCT 61.858 60.000 0.00 0.00 0.00 4.20
22 23 1.379176 GCTTTCCTCCTGGCTTCCC 60.379 63.158 0.00 0.00 0.00 3.97
23 24 1.746991 CGCTTTCCTCCTGGCTTCC 60.747 63.158 0.00 0.00 0.00 3.46
24 25 1.746991 CCGCTTTCCTCCTGGCTTC 60.747 63.158 0.00 0.00 0.00 3.86
25 26 2.352805 CCGCTTTCCTCCTGGCTT 59.647 61.111 0.00 0.00 0.00 4.35
26 27 3.721706 CCCGCTTTCCTCCTGGCT 61.722 66.667 0.00 0.00 0.00 4.75
27 28 3.268103 TTCCCGCTTTCCTCCTGGC 62.268 63.158 0.00 0.00 0.00 4.85
28 29 1.078143 CTTCCCGCTTTCCTCCTGG 60.078 63.158 0.00 0.00 0.00 4.45
29 30 0.324943 TTCTTCCCGCTTTCCTCCTG 59.675 55.000 0.00 0.00 0.00 3.86
30 31 1.064825 TTTCTTCCCGCTTTCCTCCT 58.935 50.000 0.00 0.00 0.00 3.69
31 32 1.166129 GTTTCTTCCCGCTTTCCTCC 58.834 55.000 0.00 0.00 0.00 4.30
32 33 1.807142 CTGTTTCTTCCCGCTTTCCTC 59.193 52.381 0.00 0.00 0.00 3.71
33 34 1.897560 CTGTTTCTTCCCGCTTTCCT 58.102 50.000 0.00 0.00 0.00 3.36
34 35 0.241213 GCTGTTTCTTCCCGCTTTCC 59.759 55.000 0.00 0.00 0.00 3.13
35 36 0.110192 CGCTGTTTCTTCCCGCTTTC 60.110 55.000 0.00 0.00 0.00 2.62
36 37 1.515521 CCGCTGTTTCTTCCCGCTTT 61.516 55.000 0.00 0.00 0.00 3.51
37 38 1.966451 CCGCTGTTTCTTCCCGCTT 60.966 57.895 0.00 0.00 0.00 4.68
38 39 2.358737 CCGCTGTTTCTTCCCGCT 60.359 61.111 0.00 0.00 0.00 5.52
39 40 3.431725 CCCGCTGTTTCTTCCCGC 61.432 66.667 0.00 0.00 0.00 6.13
40 41 0.887387 TTTCCCGCTGTTTCTTCCCG 60.887 55.000 0.00 0.00 0.00 5.14
41 42 1.269723 CTTTTCCCGCTGTTTCTTCCC 59.730 52.381 0.00 0.00 0.00 3.97
42 43 1.269723 CCTTTTCCCGCTGTTTCTTCC 59.730 52.381 0.00 0.00 0.00 3.46
43 44 1.335964 GCCTTTTCCCGCTGTTTCTTC 60.336 52.381 0.00 0.00 0.00 2.87
44 45 0.673985 GCCTTTTCCCGCTGTTTCTT 59.326 50.000 0.00 0.00 0.00 2.52
45 46 1.179174 GGCCTTTTCCCGCTGTTTCT 61.179 55.000 0.00 0.00 0.00 2.52
46 47 1.289066 GGCCTTTTCCCGCTGTTTC 59.711 57.895 0.00 0.00 0.00 2.78
47 48 2.207229 GGGCCTTTTCCCGCTGTTT 61.207 57.895 0.84 0.00 36.38 2.83
48 49 2.600470 GGGCCTTTTCCCGCTGTT 60.600 61.111 0.84 0.00 36.38 3.16
64 65 2.037367 TCTGTCGGTGAGAGGGGG 59.963 66.667 0.00 0.00 0.00 5.40
65 66 2.716017 GCTCTGTCGGTGAGAGGGG 61.716 68.421 0.00 0.00 37.93 4.79
66 67 1.943116 CTGCTCTGTCGGTGAGAGGG 61.943 65.000 0.00 0.00 37.93 4.30
67 68 1.510383 CTGCTCTGTCGGTGAGAGG 59.490 63.158 0.00 0.00 37.93 3.69
68 69 1.153862 GCTGCTCTGTCGGTGAGAG 60.154 63.158 0.00 0.00 40.10 3.20
69 70 2.640302 GGCTGCTCTGTCGGTGAGA 61.640 63.158 0.00 0.00 33.68 3.27
70 71 2.125753 GGCTGCTCTGTCGGTGAG 60.126 66.667 0.00 0.00 34.87 3.51
71 72 3.695606 GGGCTGCTCTGTCGGTGA 61.696 66.667 0.00 0.00 0.00 4.02
72 73 4.767255 GGGGCTGCTCTGTCGGTG 62.767 72.222 0.00 0.00 0.00 4.94
74 75 4.767255 GTGGGGCTGCTCTGTCGG 62.767 72.222 0.00 0.00 0.00 4.79
75 76 3.655810 GAGTGGGGCTGCTCTGTCG 62.656 68.421 0.00 0.00 0.00 4.35
76 77 2.267324 GAGTGGGGCTGCTCTGTC 59.733 66.667 0.00 0.00 0.00 3.51
77 78 3.325753 GGAGTGGGGCTGCTCTGT 61.326 66.667 0.00 0.00 32.34 3.41
78 79 4.106925 GGGAGTGGGGCTGCTCTG 62.107 72.222 0.00 0.00 35.71 3.35
82 83 3.529835 AAAAGGGGAGTGGGGCTGC 62.530 63.158 0.00 0.00 34.52 5.25
83 84 1.304464 GAAAAGGGGAGTGGGGCTG 60.304 63.158 0.00 0.00 0.00 4.85
84 85 2.907179 CGAAAAGGGGAGTGGGGCT 61.907 63.158 0.00 0.00 0.00 5.19
85 86 2.361230 CGAAAAGGGGAGTGGGGC 60.361 66.667 0.00 0.00 0.00 5.80
86 87 2.361230 GCGAAAAGGGGAGTGGGG 60.361 66.667 0.00 0.00 0.00 4.96
87 88 1.074951 AAGCGAAAAGGGGAGTGGG 59.925 57.895 0.00 0.00 0.00 4.61
88 89 0.537371 ACAAGCGAAAAGGGGAGTGG 60.537 55.000 0.00 0.00 0.00 4.00
89 90 0.593128 CACAAGCGAAAAGGGGAGTG 59.407 55.000 0.00 0.00 0.00 3.51
90 91 0.472471 TCACAAGCGAAAAGGGGAGT 59.528 50.000 0.00 0.00 0.00 3.85
91 92 0.875059 GTCACAAGCGAAAAGGGGAG 59.125 55.000 0.00 0.00 0.00 4.30
92 93 0.882927 CGTCACAAGCGAAAAGGGGA 60.883 55.000 0.00 0.00 0.00 4.81
93 94 1.574428 CGTCACAAGCGAAAAGGGG 59.426 57.895 0.00 0.00 0.00 4.79
94 95 1.574428 CCGTCACAAGCGAAAAGGG 59.426 57.895 0.00 0.00 0.00 3.95
95 96 1.082104 GCCGTCACAAGCGAAAAGG 60.082 57.895 0.00 0.00 0.00 3.11
96 97 4.515107 GCCGTCACAAGCGAAAAG 57.485 55.556 0.00 0.00 0.00 2.27
127 128 4.760047 CACCCGAGCTGAACCCGG 62.760 72.222 3.88 3.88 42.64 5.73
129 130 3.628646 ATGCACCCGAGCTGAACCC 62.629 63.158 0.00 0.00 34.99 4.11
130 131 1.675641 AATGCACCCGAGCTGAACC 60.676 57.895 0.00 0.00 34.99 3.62
131 132 1.503542 CAATGCACCCGAGCTGAAC 59.496 57.895 0.00 0.00 34.99 3.18
132 133 1.675310 CCAATGCACCCGAGCTGAA 60.675 57.895 0.00 0.00 34.99 3.02
133 134 2.046023 CCAATGCACCCGAGCTGA 60.046 61.111 0.00 0.00 34.99 4.26
134 135 3.818787 GCCAATGCACCCGAGCTG 61.819 66.667 0.00 0.00 37.47 4.24
135 136 4.039092 AGCCAATGCACCCGAGCT 62.039 61.111 0.00 0.00 41.13 4.09
136 137 3.818787 CAGCCAATGCACCCGAGC 61.819 66.667 0.00 0.00 41.13 5.03
137 138 0.676466 TAACAGCCAATGCACCCGAG 60.676 55.000 0.00 0.00 41.13 4.63
138 139 0.034574 ATAACAGCCAATGCACCCGA 60.035 50.000 0.00 0.00 41.13 5.14
139 140 0.817013 AATAACAGCCAATGCACCCG 59.183 50.000 0.00 0.00 41.13 5.28
140 141 2.735126 CGAAATAACAGCCAATGCACCC 60.735 50.000 0.00 0.00 41.13 4.61
141 142 2.529151 CGAAATAACAGCCAATGCACC 58.471 47.619 0.00 0.00 41.13 5.01
142 143 2.529151 CCGAAATAACAGCCAATGCAC 58.471 47.619 0.00 0.00 41.13 4.57
143 144 1.135141 GCCGAAATAACAGCCAATGCA 60.135 47.619 0.00 0.00 41.13 3.96
144 145 1.559831 GCCGAAATAACAGCCAATGC 58.440 50.000 0.00 0.00 37.95 3.56
145 146 2.208326 GGCCGAAATAACAGCCAATG 57.792 50.000 0.00 0.00 45.07 2.82
149 150 0.172578 GTTGGGCCGAAATAACAGCC 59.827 55.000 0.01 0.00 44.99 4.85
150 151 0.172578 GGTTGGGCCGAAATAACAGC 59.827 55.000 0.01 0.00 0.00 4.40
151 152 0.815095 GGGTTGGGCCGAAATAACAG 59.185 55.000 0.01 0.00 38.44 3.16
152 153 0.112606 TGGGTTGGGCCGAAATAACA 59.887 50.000 0.01 0.00 38.44 2.41
153 154 1.067425 GTTGGGTTGGGCCGAAATAAC 60.067 52.381 0.01 4.52 36.71 1.89
154 155 1.258676 GTTGGGTTGGGCCGAAATAA 58.741 50.000 0.01 0.00 36.71 1.40
155 156 0.112606 TGTTGGGTTGGGCCGAAATA 59.887 50.000 0.01 0.00 36.71 1.40
156 157 0.760945 TTGTTGGGTTGGGCCGAAAT 60.761 50.000 0.01 0.00 36.71 2.17
157 158 0.976073 TTTGTTGGGTTGGGCCGAAA 60.976 50.000 0.01 0.00 36.71 3.46
158 159 0.976073 TTTTGTTGGGTTGGGCCGAA 60.976 50.000 0.00 0.00 38.44 4.30
159 160 0.976073 TTTTTGTTGGGTTGGGCCGA 60.976 50.000 0.00 0.00 38.44 5.54
160 161 1.522569 TTTTTGTTGGGTTGGGCCG 59.477 52.632 0.00 0.00 38.44 6.13
175 176 2.030805 GCGCCTTCATGAGTCTGTTTTT 60.031 45.455 0.00 0.00 0.00 1.94
176 177 1.537202 GCGCCTTCATGAGTCTGTTTT 59.463 47.619 0.00 0.00 0.00 2.43
177 178 1.160137 GCGCCTTCATGAGTCTGTTT 58.840 50.000 0.00 0.00 0.00 2.83
178 179 1.016130 CGCGCCTTCATGAGTCTGTT 61.016 55.000 0.00 0.00 0.00 3.16
179 180 1.446792 CGCGCCTTCATGAGTCTGT 60.447 57.895 0.00 0.00 0.00 3.41
180 181 1.153765 TCGCGCCTTCATGAGTCTG 60.154 57.895 0.00 0.00 0.00 3.51
181 182 1.153745 GTCGCGCCTTCATGAGTCT 60.154 57.895 0.00 0.00 0.00 3.24
182 183 1.153745 AGTCGCGCCTTCATGAGTC 60.154 57.895 0.00 0.00 0.00 3.36
183 184 1.446792 CAGTCGCGCCTTCATGAGT 60.447 57.895 0.00 0.00 0.00 3.41
184 185 2.169789 CCAGTCGCGCCTTCATGAG 61.170 63.158 0.00 0.00 0.00 2.90
185 186 2.125552 CCAGTCGCGCCTTCATGA 60.126 61.111 0.00 0.00 0.00 3.07
186 187 3.197790 CCCAGTCGCGCCTTCATG 61.198 66.667 0.00 0.00 0.00 3.07
194 195 2.686816 AAAAATCGGCCCAGTCGCG 61.687 57.895 0.00 0.00 0.00 5.87
195 196 1.154035 CAAAAATCGGCCCAGTCGC 60.154 57.895 0.00 0.00 0.00 5.19
196 197 1.154035 GCAAAAATCGGCCCAGTCG 60.154 57.895 0.00 0.00 0.00 4.18
197 198 0.532115 ATGCAAAAATCGGCCCAGTC 59.468 50.000 0.00 0.00 0.00 3.51
198 199 0.247185 CATGCAAAAATCGGCCCAGT 59.753 50.000 0.00 0.00 0.00 4.00
199 200 1.085501 GCATGCAAAAATCGGCCCAG 61.086 55.000 14.21 0.00 0.00 4.45
200 201 1.079266 GCATGCAAAAATCGGCCCA 60.079 52.632 14.21 0.00 0.00 5.36
201 202 1.815003 GGCATGCAAAAATCGGCCC 60.815 57.895 21.36 0.00 35.42 5.80
202 203 2.166579 CGGCATGCAAAAATCGGCC 61.167 57.895 21.36 0.00 38.04 6.13
203 204 1.153862 TCGGCATGCAAAAATCGGC 60.154 52.632 21.36 0.00 0.00 5.54
204 205 0.109365 TGTCGGCATGCAAAAATCGG 60.109 50.000 21.36 0.00 0.00 4.18
205 206 0.984109 GTGTCGGCATGCAAAAATCG 59.016 50.000 21.36 12.68 0.00 3.34
206 207 2.352503 AGTGTCGGCATGCAAAAATC 57.647 45.000 21.36 5.03 0.00 2.17
207 208 3.932545 TTAGTGTCGGCATGCAAAAAT 57.067 38.095 21.36 3.78 0.00 1.82
208 209 3.717400 TTTAGTGTCGGCATGCAAAAA 57.283 38.095 21.36 5.71 0.00 1.94
209 210 3.717400 TTTTAGTGTCGGCATGCAAAA 57.283 38.095 21.36 12.43 0.00 2.44
210 211 3.717400 TTTTTAGTGTCGGCATGCAAA 57.283 38.095 21.36 6.51 0.00 3.68
228 229 2.361119 GAGGCCCTTTTCAGACGTTTTT 59.639 45.455 0.00 0.00 0.00 1.94
229 230 1.954382 GAGGCCCTTTTCAGACGTTTT 59.046 47.619 0.00 0.00 0.00 2.43
230 231 1.143073 AGAGGCCCTTTTCAGACGTTT 59.857 47.619 0.00 0.00 0.00 3.60
231 232 0.765510 AGAGGCCCTTTTCAGACGTT 59.234 50.000 0.00 0.00 0.00 3.99
232 233 0.765510 AAGAGGCCCTTTTCAGACGT 59.234 50.000 0.00 0.00 0.00 4.34
233 234 1.160137 CAAGAGGCCCTTTTCAGACG 58.840 55.000 0.00 0.00 31.42 4.18
234 235 1.539157 CCAAGAGGCCCTTTTCAGAC 58.461 55.000 0.00 0.00 31.42 3.51
235 236 0.405585 CCCAAGAGGCCCTTTTCAGA 59.594 55.000 0.00 0.00 31.42 3.27
236 237 0.405585 TCCCAAGAGGCCCTTTTCAG 59.594 55.000 0.00 0.00 34.51 3.02
237 238 0.405585 CTCCCAAGAGGCCCTTTTCA 59.594 55.000 0.00 0.00 36.39 2.69
238 239 0.967887 GCTCCCAAGAGGCCCTTTTC 60.968 60.000 0.00 0.00 40.79 2.29
239 240 1.077445 GCTCCCAAGAGGCCCTTTT 59.923 57.895 0.00 0.00 40.79 2.27
240 241 2.766660 GCTCCCAAGAGGCCCTTT 59.233 61.111 0.00 0.00 40.79 3.11
241 242 3.721706 CGCTCCCAAGAGGCCCTT 61.722 66.667 0.00 0.00 40.79 3.95
252 253 4.008933 ATATCCAGCCGCGCTCCC 62.009 66.667 5.56 0.00 36.40 4.30
253 254 2.740055 CATATCCAGCCGCGCTCC 60.740 66.667 5.56 0.00 36.40 4.70
254 255 3.418068 GCATATCCAGCCGCGCTC 61.418 66.667 5.56 0.00 36.40 5.03
255 256 3.873026 GAGCATATCCAGCCGCGCT 62.873 63.158 5.56 0.00 40.77 5.92
256 257 2.492449 TAGAGCATATCCAGCCGCGC 62.492 60.000 0.00 0.00 0.00 6.86
257 258 0.038251 TTAGAGCATATCCAGCCGCG 60.038 55.000 0.00 0.00 0.00 6.46
258 259 1.273606 TCTTAGAGCATATCCAGCCGC 59.726 52.381 0.00 0.00 0.00 6.53
259 260 3.229276 CTCTTAGAGCATATCCAGCCG 57.771 52.381 0.00 0.00 0.00 5.52
271 272 3.194968 TCTTGGGTTTACGGCTCTTAGAG 59.805 47.826 4.63 4.63 0.00 2.43
272 273 3.167485 TCTTGGGTTTACGGCTCTTAGA 58.833 45.455 0.00 0.00 0.00 2.10
276 277 0.613777 CCTCTTGGGTTTACGGCTCT 59.386 55.000 0.00 0.00 0.00 4.09
284 285 3.268103 ATCGCCGCCTCTTGGGTTT 62.268 57.895 0.00 0.00 37.43 3.27
287 288 4.918201 GGATCGCCGCCTCTTGGG 62.918 72.222 0.00 0.00 38.36 4.12
303 304 1.802337 TTGGTCGTCTCAGGTCACGG 61.802 60.000 0.00 0.00 36.64 4.94
304 305 0.031585 TTTGGTCGTCTCAGGTCACG 59.968 55.000 0.00 0.00 37.36 4.35
305 306 2.234300 TTTTGGTCGTCTCAGGTCAC 57.766 50.000 0.00 0.00 0.00 3.67
306 307 2.169769 AGTTTTTGGTCGTCTCAGGTCA 59.830 45.455 0.00 0.00 0.00 4.02
307 308 2.544267 CAGTTTTTGGTCGTCTCAGGTC 59.456 50.000 0.00 0.00 0.00 3.85
308 309 2.561569 CAGTTTTTGGTCGTCTCAGGT 58.438 47.619 0.00 0.00 0.00 4.00
311 312 1.305201 GGCAGTTTTTGGTCGTCTCA 58.695 50.000 0.00 0.00 0.00 3.27
316 317 2.820330 ACATTTGGCAGTTTTTGGTCG 58.180 42.857 0.00 0.00 0.00 4.79
346 347 5.523552 ACAAAAGAAAGCATTGGCAAACTAC 59.476 36.000 3.01 3.71 44.61 2.73
351 352 3.065095 GCAACAAAAGAAAGCATTGGCAA 59.935 39.130 0.68 0.68 44.61 4.52
369 370 6.428385 AGAAATAAGCAGAGTACATGCAAC 57.572 37.500 20.94 8.51 46.31 4.17
387 388 8.907222 ACATTGAAGCCAAAACATTAAGAAAT 57.093 26.923 0.00 0.00 35.67 2.17
391 392 8.063630 GTGAAACATTGAAGCCAAAACATTAAG 58.936 33.333 0.00 0.00 35.67 1.85
392 393 7.550551 TGTGAAACATTGAAGCCAAAACATTAA 59.449 29.630 0.00 0.00 45.67 1.40
438 439 5.641636 TGTAGATACGCACAACATTCACATT 59.358 36.000 0.00 0.00 0.00 2.71
445 446 3.001228 CGCAATGTAGATACGCACAACAT 59.999 43.478 0.00 0.00 32.32 2.71
449 450 2.570442 TCGCAATGTAGATACGCACA 57.430 45.000 0.00 0.00 0.00 4.57
450 451 3.918258 TTTCGCAATGTAGATACGCAC 57.082 42.857 0.00 0.00 0.00 5.34
451 452 4.930463 TTTTTCGCAATGTAGATACGCA 57.070 36.364 0.00 0.00 0.00 5.24
492 569 9.379791 CATCTATTTTAAAACGAAGGGAGTAGT 57.620 33.333 1.97 0.00 0.00 2.73
493 570 9.595823 TCATCTATTTTAAAACGAAGGGAGTAG 57.404 33.333 1.97 0.00 0.00 2.57
494 571 9.374838 GTCATCTATTTTAAAACGAAGGGAGTA 57.625 33.333 1.97 0.00 0.00 2.59
495 572 8.101419 AGTCATCTATTTTAAAACGAAGGGAGT 58.899 33.333 1.97 3.92 0.00 3.85
496 573 8.494016 AGTCATCTATTTTAAAACGAAGGGAG 57.506 34.615 1.97 0.00 0.00 4.30
497 574 8.098286 TGAGTCATCTATTTTAAAACGAAGGGA 58.902 33.333 1.97 1.37 0.00 4.20
498 575 8.263940 TGAGTCATCTATTTTAAAACGAAGGG 57.736 34.615 1.97 0.00 0.00 3.95
499 576 9.543018 GTTGAGTCATCTATTTTAAAACGAAGG 57.457 33.333 1.97 1.41 0.00 3.46
512 589 8.865090 CCCTCAGTATAAAGTTGAGTCATCTAT 58.135 37.037 4.14 0.00 37.27 1.98
513 590 8.059461 TCCCTCAGTATAAAGTTGAGTCATCTA 58.941 37.037 4.14 0.00 37.27 1.98
514 591 6.897966 TCCCTCAGTATAAAGTTGAGTCATCT 59.102 38.462 0.00 0.00 37.27 2.90
515 592 7.113658 TCCCTCAGTATAAAGTTGAGTCATC 57.886 40.000 0.00 0.00 37.27 2.92
516 593 6.670027 ACTCCCTCAGTATAAAGTTGAGTCAT 59.330 38.462 0.00 0.00 37.27 3.06
517 594 6.017192 ACTCCCTCAGTATAAAGTTGAGTCA 58.983 40.000 0.00 0.00 37.27 3.41
518 595 6.532988 ACTCCCTCAGTATAAAGTTGAGTC 57.467 41.667 0.72 0.00 37.27 3.36
519 596 6.380560 GGTACTCCCTCAGTATAAAGTTGAGT 59.619 42.308 0.00 0.00 39.90 3.41
520 597 6.608002 AGGTACTCCCTCAGTATAAAGTTGAG 59.392 42.308 0.00 0.00 40.71 3.02
521 598 6.380274 CAGGTACTCCCTCAGTATAAAGTTGA 59.620 42.308 0.00 0.00 43.86 3.18
522 599 6.574350 CAGGTACTCCCTCAGTATAAAGTTG 58.426 44.000 0.00 0.00 43.86 3.16
523 600 5.128991 GCAGGTACTCCCTCAGTATAAAGTT 59.871 44.000 0.00 0.00 43.86 2.66
524 601 4.650131 GCAGGTACTCCCTCAGTATAAAGT 59.350 45.833 0.00 0.00 43.86 2.66
525 602 4.039366 GGCAGGTACTCCCTCAGTATAAAG 59.961 50.000 0.00 0.00 43.86 1.85
526 603 3.965347 GGCAGGTACTCCCTCAGTATAAA 59.035 47.826 0.00 0.00 43.86 1.40
527 604 3.052414 TGGCAGGTACTCCCTCAGTATAA 60.052 47.826 0.00 0.00 43.86 0.98
528 605 2.516702 TGGCAGGTACTCCCTCAGTATA 59.483 50.000 0.00 0.00 43.86 1.47
529 606 1.291033 TGGCAGGTACTCCCTCAGTAT 59.709 52.381 0.00 0.00 43.86 2.12
530 607 0.708209 TGGCAGGTACTCCCTCAGTA 59.292 55.000 0.00 0.00 43.86 2.74
531 608 0.043334 ATGGCAGGTACTCCCTCAGT 59.957 55.000 0.00 0.00 43.86 3.41
532 609 1.207791 AATGGCAGGTACTCCCTCAG 58.792 55.000 0.00 0.00 43.86 3.35
533 610 1.668826 AAATGGCAGGTACTCCCTCA 58.331 50.000 0.00 0.00 43.86 3.86
534 611 2.290960 ACAAAATGGCAGGTACTCCCTC 60.291 50.000 0.00 0.00 43.86 4.30
536 613 2.215942 ACAAAATGGCAGGTACTCCC 57.784 50.000 0.00 0.00 34.60 4.30
537 614 3.951663 ACTACAAAATGGCAGGTACTCC 58.048 45.455 0.00 0.00 34.60 3.85
538 615 5.959618 AAACTACAAAATGGCAGGTACTC 57.040 39.130 0.00 0.00 34.60 2.59
539 616 6.724893 AAAAACTACAAAATGGCAGGTACT 57.275 33.333 0.00 0.00 43.88 2.73
564 641 4.453480 AAAATGACTGTCCTCAAAGGGA 57.547 40.909 5.17 0.00 35.59 4.20
581 658 9.831682 TGTCCTTAAACCTCCCTAAATAAAAAT 57.168 29.630 0.00 0.00 0.00 1.82
582 659 9.304335 CTGTCCTTAAACCTCCCTAAATAAAAA 57.696 33.333 0.00 0.00 0.00 1.94
587 664 5.550403 TGACTGTCCTTAAACCTCCCTAAAT 59.450 40.000 5.17 0.00 0.00 1.40
592 669 4.302559 AATGACTGTCCTTAAACCTCCC 57.697 45.455 5.17 0.00 0.00 4.30
600 677 9.681062 CTCCCTAAATAAAAATGACTGTCCTTA 57.319 33.333 5.17 0.00 0.00 2.69
601 678 7.615757 CCTCCCTAAATAAAAATGACTGTCCTT 59.384 37.037 5.17 0.00 0.00 3.36
602 679 7.119387 CCTCCCTAAATAAAAATGACTGTCCT 58.881 38.462 5.17 0.00 0.00 3.85
611 688 9.831682 TGTCCTTAAACCTCCCTAAATAAAAAT 57.168 29.630 0.00 0.00 0.00 1.82
615 692 7.311486 GGACTGTCCTTAAACCTCCCTAAATAA 60.311 40.741 19.53 0.00 32.53 1.40
648 725 2.168496 AGGACTGTCCGATTCTCGAAA 58.832 47.619 20.49 0.00 43.74 3.46
649 726 1.835494 AGGACTGTCCGATTCTCGAA 58.165 50.000 20.49 0.00 43.74 3.71
650 727 1.835494 AAGGACTGTCCGATTCTCGA 58.165 50.000 20.49 0.00 43.74 4.04
651 728 2.656560 AAAGGACTGTCCGATTCTCG 57.343 50.000 20.49 0.00 42.75 4.04
652 729 3.665190 ACAAAAGGACTGTCCGATTCTC 58.335 45.455 20.49 0.00 42.75 2.87
653 730 3.771577 ACAAAAGGACTGTCCGATTCT 57.228 42.857 20.49 5.54 42.75 2.40
654 731 3.367025 CGTACAAAAGGACTGTCCGATTC 59.633 47.826 20.49 7.68 42.75 2.52
655 732 3.323243 CGTACAAAAGGACTGTCCGATT 58.677 45.455 20.49 16.38 42.75 3.34
658 759 0.788391 GCGTACAAAAGGACTGTCCG 59.212 55.000 20.49 9.33 42.75 4.79
687 788 1.414061 ATATCAGGCTTGGCTCGGCT 61.414 55.000 0.00 0.00 37.84 5.52
691 792 1.941668 GCGGTATATCAGGCTTGGCTC 60.942 57.143 0.00 0.00 0.00 4.70
696 797 1.136828 TTGGGCGGTATATCAGGCTT 58.863 50.000 0.00 0.00 37.04 4.35
767 870 1.799933 TTTTTGAGGGGTGCCAATGT 58.200 45.000 0.00 0.00 0.00 2.71
783 886 4.130286 TGTGATTCGGCCTTTTGTTTTT 57.870 36.364 0.00 0.00 0.00 1.94
784 887 3.810310 TGTGATTCGGCCTTTTGTTTT 57.190 38.095 0.00 0.00 0.00 2.43
785 888 4.057432 CAATGTGATTCGGCCTTTTGTTT 58.943 39.130 0.00 0.00 0.00 2.83
786 889 3.554752 CCAATGTGATTCGGCCTTTTGTT 60.555 43.478 0.00 0.00 0.00 2.83
787 890 2.029110 CCAATGTGATTCGGCCTTTTGT 60.029 45.455 0.00 0.00 0.00 2.83
788 891 2.609350 CCAATGTGATTCGGCCTTTTG 58.391 47.619 0.00 0.00 0.00 2.44
789 892 1.066929 GCCAATGTGATTCGGCCTTTT 60.067 47.619 0.00 0.00 38.67 2.27
790 893 0.532115 GCCAATGTGATTCGGCCTTT 59.468 50.000 0.00 0.00 38.67 3.11
791 894 1.656818 CGCCAATGTGATTCGGCCTT 61.657 55.000 0.00 0.00 41.71 4.35
792 895 2.114670 CGCCAATGTGATTCGGCCT 61.115 57.895 0.00 0.00 41.71 5.19
793 896 2.408835 CGCCAATGTGATTCGGCC 59.591 61.111 0.00 0.00 41.71 6.13
794 897 2.278142 GCGCCAATGTGATTCGGC 60.278 61.111 0.00 0.00 41.30 5.54
795 898 2.023181 CGCGCCAATGTGATTCGG 59.977 61.111 0.00 0.00 0.00 4.30
796 899 1.011904 CTCGCGCCAATGTGATTCG 60.012 57.895 0.00 0.00 0.00 3.34
797 900 1.297893 GCTCGCGCCAATGTGATTC 60.298 57.895 0.00 0.00 0.00 2.52
798 901 2.793946 GCTCGCGCCAATGTGATT 59.206 55.556 0.00 0.00 0.00 2.57
1166 1280 2.280797 GTGCGCTCACCTTGGACA 60.281 61.111 9.73 0.00 37.24 4.02
1176 1290 0.595310 GGGATAAGACGAGTGCGCTC 60.595 60.000 17.53 17.53 42.48 5.03
1186 1300 2.798853 GCGGAAGAGAACGGGATAAGAC 60.799 54.545 0.00 0.00 0.00 3.01
1207 1321 1.917921 GCTCGACGAAATGCCTACG 59.082 57.895 0.00 0.00 0.00 3.51
1242 1356 6.091713 ACCGAGAACAAATATTACAGGTTTCG 59.908 38.462 6.52 6.52 0.00 3.46
1264 1378 1.341531 CTCCCAGGACATAAGCTACCG 59.658 57.143 0.00 0.00 0.00 4.02
1277 1391 0.745845 CGGACATTTCTGCTCCCAGG 60.746 60.000 0.00 0.00 39.61 4.45
1310 1424 0.575390 CGTCGTCTTGTCACCACAAC 59.425 55.000 0.00 0.00 37.61 3.32
1314 1428 0.030235 CAGACGTCGTCTTGTCACCA 59.970 55.000 24.94 0.00 41.37 4.17
1362 1476 2.094417 GGCTGCTCGACAAAATGTCTAC 59.906 50.000 8.68 0.00 44.85 2.59
1366 1480 0.250901 AGGGCTGCTCGACAAAATGT 60.251 50.000 0.00 0.00 0.00 2.71
1372 1486 2.210013 ACAAGAGGGCTGCTCGACA 61.210 57.895 0.00 0.00 0.00 4.35
1402 1517 0.179234 ACCGAACACCACACATCACA 59.821 50.000 0.00 0.00 0.00 3.58
1445 1560 6.000246 TCACCCTGCAGATTAACATCAATA 58.000 37.500 17.39 0.00 0.00 1.90
1584 1704 8.668510 AATTAAGCTTGACATCATCGAGTATT 57.331 30.769 9.86 0.00 40.64 1.89
1594 1714 8.088365 ACCCTTAACAAAATTAAGCTTGACATC 58.912 33.333 9.86 0.00 32.22 3.06
1642 1762 6.497259 GGAGTAGGTTCCATGGTATATCAAGA 59.503 42.308 12.58 0.00 37.20 3.02
1665 1785 7.169591 GTCTATAGCTTCTACTCCATAGTGGA 58.830 42.308 0.00 0.00 45.98 4.02
1666 1786 6.376018 GGTCTATAGCTTCTACTCCATAGTGG 59.624 46.154 0.00 0.00 39.43 4.00
1667 1787 6.943146 TGGTCTATAGCTTCTACTCCATAGTG 59.057 42.308 0.00 0.00 36.36 2.74
1668 1788 7.017750 TCTGGTCTATAGCTTCTACTCCATAGT 59.982 40.741 0.00 0.00 39.91 2.12
1669 1789 7.398829 TCTGGTCTATAGCTTCTACTCCATAG 58.601 42.308 0.00 0.00 0.00 2.23
1670 1790 7.237887 TCTCTGGTCTATAGCTTCTACTCCATA 59.762 40.741 0.00 0.00 0.00 2.74
1671 1791 6.044989 TCTCTGGTCTATAGCTTCTACTCCAT 59.955 42.308 0.00 0.00 0.00 3.41
1672 1792 5.369993 TCTCTGGTCTATAGCTTCTACTCCA 59.630 44.000 0.00 0.00 0.00 3.86
1673 1793 5.871834 TCTCTGGTCTATAGCTTCTACTCC 58.128 45.833 0.00 0.00 0.00 3.85
1674 1794 7.996098 ATTCTCTGGTCTATAGCTTCTACTC 57.004 40.000 0.00 0.00 0.00 2.59
1675 1795 9.515226 CTAATTCTCTGGTCTATAGCTTCTACT 57.485 37.037 0.00 0.00 0.00 2.57
1676 1796 9.292195 ACTAATTCTCTGGTCTATAGCTTCTAC 57.708 37.037 0.00 0.00 0.00 2.59
1677 1797 9.869667 AACTAATTCTCTGGTCTATAGCTTCTA 57.130 33.333 0.00 0.00 0.00 2.10
1678 1798 8.776061 AACTAATTCTCTGGTCTATAGCTTCT 57.224 34.615 0.00 0.00 0.00 2.85
1679 1799 9.825109 AAAACTAATTCTCTGGTCTATAGCTTC 57.175 33.333 0.00 0.00 0.00 3.86
1689 1809 9.668497 GGTACATCTTAAAACTAATTCTCTGGT 57.332 33.333 0.00 0.00 0.00 4.00
1690 1810 9.667107 TGGTACATCTTAAAACTAATTCTCTGG 57.333 33.333 0.00 0.00 0.00 3.86
1696 1816 8.957466 GCCTTCTGGTACATCTTAAAACTAATT 58.043 33.333 0.00 0.00 38.20 1.40
1697 1817 8.107095 TGCCTTCTGGTACATCTTAAAACTAAT 58.893 33.333 0.00 0.00 38.20 1.73
1698 1818 7.455058 TGCCTTCTGGTACATCTTAAAACTAA 58.545 34.615 0.00 0.00 38.20 2.24
1699 1819 7.011499 TGCCTTCTGGTACATCTTAAAACTA 57.989 36.000 0.00 0.00 38.20 2.24
1700 1820 5.876357 TGCCTTCTGGTACATCTTAAAACT 58.124 37.500 0.00 0.00 38.20 2.66
1701 1821 5.938125 TCTGCCTTCTGGTACATCTTAAAAC 59.062 40.000 0.00 0.00 38.20 2.43
1709 1829 2.409948 GCTTCTGCCTTCTGGTACAT 57.590 50.000 0.00 0.00 38.20 2.29
1721 1841 2.087646 CTAACCAAAGAGGGCTTCTGC 58.912 52.381 0.00 0.00 43.89 4.26
1722 1842 3.425162 ACTAACCAAAGAGGGCTTCTG 57.575 47.619 0.00 0.00 43.89 3.02
1723 1843 4.455070 AAACTAACCAAAGAGGGCTTCT 57.545 40.909 0.00 0.00 43.89 2.85
1724 1844 5.314529 ACTAAACTAACCAAAGAGGGCTTC 58.685 41.667 0.00 0.00 43.89 3.86
1725 1845 5.314529 GACTAAACTAACCAAAGAGGGCTT 58.685 41.667 0.00 0.00 43.89 4.35
1726 1846 4.263374 GGACTAAACTAACCAAAGAGGGCT 60.263 45.833 0.00 0.00 43.89 5.19
1727 1847 4.008330 GGACTAAACTAACCAAAGAGGGC 58.992 47.826 0.00 0.00 43.89 5.19
1728 1848 5.500546 AGGACTAAACTAACCAAAGAGGG 57.499 43.478 0.00 0.00 43.89 4.30
1729 1849 6.770542 AGAAGGACTAAACTAACCAAAGAGG 58.229 40.000 0.00 0.00 45.67 3.69
1748 1868 2.959465 ACAAGAAGTTGGGGAGAAGG 57.041 50.000 0.00 0.00 38.07 3.46
1766 1886 5.105756 ACCACAAAGGAGCTTTTGCATATAC 60.106 40.000 10.19 0.00 44.77 1.47
1782 1905 6.983474 AAATCAAAAAGGTTCACCACAAAG 57.017 33.333 0.00 0.00 38.89 2.77
1786 1909 5.684184 GTCGTAAATCAAAAAGGTTCACCAC 59.316 40.000 0.00 0.00 38.89 4.16
1800 1923 4.212425 GTGTGTGAATGGTGTCGTAAATCA 59.788 41.667 0.00 0.00 0.00 2.57
1815 1938 7.676004 TCCTAAAGTCATTAGATGTGTGTGAA 58.324 34.615 0.00 0.00 43.16 3.18
1816 1939 7.178451 TCTCCTAAAGTCATTAGATGTGTGTGA 59.822 37.037 0.00 0.00 43.16 3.58
1849 2003 2.100749 GGCATACCGGCTAAAGCATTTT 59.899 45.455 0.00 0.00 44.36 1.82
1930 2092 7.661536 TCACACTGGAGCCTATATTATATCC 57.338 40.000 0.00 0.00 0.00 2.59
1937 2099 5.307976 TGCTAATTCACACTGGAGCCTATAT 59.692 40.000 0.00 0.00 0.00 0.86
1970 2132 7.094634 CCCCTTTTCAATATCTCAATGTATCGG 60.095 40.741 0.00 0.00 0.00 4.18
1972 2134 7.231317 TGCCCCTTTTCAATATCTCAATGTATC 59.769 37.037 0.00 0.00 0.00 2.24
1973 2135 7.068702 TGCCCCTTTTCAATATCTCAATGTAT 58.931 34.615 0.00 0.00 0.00 2.29
1974 2136 6.430864 TGCCCCTTTTCAATATCTCAATGTA 58.569 36.000 0.00 0.00 0.00 2.29
1987 2150 1.000731 CGAAGCATTTGCCCCTTTTCA 59.999 47.619 0.00 0.00 43.38 2.69
1988 2151 1.000843 ACGAAGCATTTGCCCCTTTTC 59.999 47.619 0.00 0.00 43.38 2.29
2006 2169 7.701924 ACATTTCATCATATGGCTTTGTTTACG 59.298 33.333 2.13 0.00 0.00 3.18
2009 2172 7.879160 ACAACATTTCATCATATGGCTTTGTTT 59.121 29.630 2.13 0.00 0.00 2.83
2040 2214 4.202274 TGTTCGGTGTATTTGTCAGGAAGA 60.202 41.667 0.00 0.00 0.00 2.87
2044 2218 3.659786 TCTGTTCGGTGTATTTGTCAGG 58.340 45.455 0.00 0.00 0.00 3.86
2045 2219 4.988540 TCTTCTGTTCGGTGTATTTGTCAG 59.011 41.667 0.00 0.00 0.00 3.51
2049 2223 7.962918 CCTTTTATCTTCTGTTCGGTGTATTTG 59.037 37.037 0.00 0.00 0.00 2.32
2052 2226 6.708285 ACCTTTTATCTTCTGTTCGGTGTAT 58.292 36.000 0.00 0.00 0.00 2.29
2058 2232 9.329913 CATGTTTTACCTTTTATCTTCTGTTCG 57.670 33.333 0.00 0.00 0.00 3.95
2063 2237 8.306761 CAAGGCATGTTTTACCTTTTATCTTCT 58.693 33.333 0.00 0.00 41.90 2.85
2070 2244 4.653801 AGGTCAAGGCATGTTTTACCTTTT 59.346 37.500 10.40 0.00 41.90 2.27
2074 2248 4.585879 TCTAGGTCAAGGCATGTTTTACC 58.414 43.478 0.00 1.26 0.00 2.85
2084 2258 7.631717 AAAAGATTTACATCTAGGTCAAGGC 57.368 36.000 0.00 0.00 39.00 4.35
2132 2306 5.344066 TCAAAATAAAGCGTGAAAAGCACA 58.656 33.333 0.00 0.00 46.50 4.57
2154 2328 4.936891 ACAAGCACTTTTGTCCAAATCTC 58.063 39.130 0.00 0.00 36.60 2.75
2162 2336 5.576384 TCATGTTCAAACAAGCACTTTTGTC 59.424 36.000 0.00 1.76 43.03 3.18
2273 2454 8.970020 AGGTAAAATATCATGTGCAATTGAAGA 58.030 29.630 10.34 0.00 0.00 2.87
2296 2477 4.890581 AGATTTCGTGCTAGATGACTAGGT 59.109 41.667 0.00 0.00 44.33 3.08
2325 2506 4.471904 AATTCCACTGAAGATACAGCGA 57.528 40.909 0.00 0.00 41.06 4.93
2326 2507 5.551760 AAAATTCCACTGAAGATACAGCG 57.448 39.130 0.00 0.00 41.06 5.18
2327 2508 7.201652 GGAGTAAAATTCCACTGAAGATACAGC 60.202 40.741 0.00 0.00 41.06 4.40
2369 2550 7.177216 TGTGCAGAATCCTTTGTAGAATCATTT 59.823 33.333 0.00 0.00 0.00 2.32
2509 2690 1.078143 AATGAGCCTGGCGTTCTCC 60.078 57.895 13.96 0.50 0.00 3.71
2585 2766 9.981114 AGTTCAAAAGAAAAAGAAAACTCTGAA 57.019 25.926 0.00 0.00 0.00 3.02
2586 2767 9.981114 AAGTTCAAAAGAAAAAGAAAACTCTGA 57.019 25.926 0.00 0.00 0.00 3.27
2590 2771 7.870954 ACGGAAGTTCAAAAGAAAAAGAAAACT 59.129 29.630 5.01 0.00 46.40 2.66
2591 2772 8.014322 ACGGAAGTTCAAAAGAAAAAGAAAAC 57.986 30.769 5.01 0.00 46.40 2.43
2932 3116 6.070881 ACAGATAGACAGATGCTCAAACTTCT 60.071 38.462 0.00 0.00 0.00 2.85
2948 3132 7.324856 CAGCATATAACAGTCGAACAGATAGAC 59.675 40.741 0.00 0.00 35.30 2.59
2959 3143 4.060900 AGCCATTCAGCATATAACAGTCG 58.939 43.478 0.00 0.00 34.23 4.18
3018 3206 6.668541 TTACATCTGCACTGAAATCTTAGC 57.331 37.500 0.00 0.00 0.00 3.09
3048 3236 9.099454 AGCAATGCAGTTAGTTAGTTATACTTC 57.901 33.333 8.35 0.00 0.00 3.01
3057 3245 5.869753 ACAAGAGCAATGCAGTTAGTTAG 57.130 39.130 8.35 0.00 0.00 2.34
3058 3246 6.368791 CAGTACAAGAGCAATGCAGTTAGTTA 59.631 38.462 8.35 0.00 0.00 2.24
3059 3247 5.180117 CAGTACAAGAGCAATGCAGTTAGTT 59.820 40.000 8.35 0.00 0.00 2.24
3185 3375 0.869730 GATTGGTTGCGGTGTTACGT 59.130 50.000 0.00 0.00 35.98 3.57
3221 3411 6.071728 CCTGATAACAGAAAATTCCAAGCACT 60.072 38.462 0.79 0.00 46.03 4.40
3222 3412 6.095377 CCTGATAACAGAAAATTCCAAGCAC 58.905 40.000 0.79 0.00 46.03 4.40
3335 3526 2.223479 CGGTCCAATGATTAAAAGCCCG 60.223 50.000 0.00 0.00 0.00 6.13
3500 3691 4.999950 GCTAGTATGCTAATGCTGACCAAT 59.000 41.667 0.00 0.00 40.48 3.16
3565 3756 5.688823 TCAGATGAAAAACATAAGTGCGTG 58.311 37.500 0.00 0.00 39.56 5.34
3566 3757 5.940192 TCAGATGAAAAACATAAGTGCGT 57.060 34.783 0.00 0.00 39.56 5.24
3570 3793 7.781693 AGCCCATATCAGATGAAAAACATAAGT 59.218 33.333 0.00 0.00 39.56 2.24
3574 3797 7.293073 AGTAGCCCATATCAGATGAAAAACAT 58.707 34.615 0.00 0.00 42.47 2.71
3575 3798 6.662755 AGTAGCCCATATCAGATGAAAAACA 58.337 36.000 0.00 0.00 0.00 2.83
3576 3799 7.420800 CAAGTAGCCCATATCAGATGAAAAAC 58.579 38.462 0.00 0.00 0.00 2.43
3577 3800 6.039717 GCAAGTAGCCCATATCAGATGAAAAA 59.960 38.462 0.00 0.00 37.23 1.94
3593 3818 1.068954 GTTCAGCAAGTGCAAGTAGCC 60.069 52.381 6.00 0.00 44.83 3.93
3627 3852 3.119173 TGTGGGTTGCTATTTTGCATAGC 60.119 43.478 10.29 10.29 45.28 2.97
3642 3867 6.658849 TGCTACTGTTCATTATATGTGGGTT 58.341 36.000 0.00 0.00 0.00 4.11
3653 3878 9.624373 AATTCTATGATCTTGCTACTGTTCATT 57.376 29.630 0.00 0.00 0.00 2.57
3686 3914 4.074627 TCGACAAATGGGTGAACTACAA 57.925 40.909 0.00 0.00 0.00 2.41
3698 3926 2.604914 CGACCTCTGGAATCGACAAATG 59.395 50.000 0.00 0.00 38.10 2.32
3859 4091 2.586079 CGTAGCCTGCATGGACCG 60.586 66.667 6.40 1.69 38.35 4.79
3931 4163 0.514691 GAGTTTCTTGGTGCTGAGCG 59.485 55.000 0.00 0.00 0.00 5.03
4034 4266 5.163652 TGACTGACTGATTGGACTACGTATG 60.164 44.000 0.00 0.00 0.00 2.39
4122 4369 9.915629 TCTTCTCTCTTTGCTTTACTTTAGTAG 57.084 33.333 0.00 0.00 0.00 2.57
4145 4397 6.264970 AGGACGACTAACTAACAAGTCTTCTT 59.735 38.462 8.32 0.00 39.61 2.52
4146 4398 5.769162 AGGACGACTAACTAACAAGTCTTCT 59.231 40.000 8.32 0.00 39.61 2.85
4147 4399 5.857517 CAGGACGACTAACTAACAAGTCTTC 59.142 44.000 0.00 0.00 40.00 2.87
4607 4871 4.792087 GACTTCGGGCTGTCCAAA 57.208 55.556 0.00 0.00 34.36 3.28
4790 5054 2.575993 GAGGAGAGCTCGCAGCAA 59.424 61.111 19.55 0.00 45.56 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.