Multiple sequence alignment - TraesCS4A01G255200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G255200 chr4A 100.000 2688 0 0 1 2688 567469959 567472646 0.000000e+00 4964
1 TraesCS4A01G255200 chr4A 87.647 1279 103 19 484 1734 567038662 567037411 0.000000e+00 1435
2 TraesCS4A01G255200 chr4A 83.571 140 20 1 1803 1939 567035749 567035610 7.810000e-26 128
3 TraesCS4A01G255200 chr4D 86.588 2289 194 68 449 2688 35172909 35170685 0.000000e+00 2422
4 TraesCS4A01G255200 chr4D 86.476 1257 103 31 484 1715 35521822 35523036 0.000000e+00 1317
5 TraesCS4A01G255200 chr4D 86.429 140 16 1 1803 1939 35523397 35523536 1.670000e-32 150
6 TraesCS4A01G255200 chr4B 87.573 1714 148 36 449 2133 51125872 51124195 0.000000e+00 1925
7 TraesCS4A01G255200 chr4B 88.204 1297 104 23 449 1736 51748488 51749744 0.000000e+00 1502
8 TraesCS4A01G255200 chr4B 84.553 123 19 0 2192 2314 51121875 51121753 3.630000e-24 122
9 TraesCS4A01G255200 chr6D 95.824 431 18 0 1 431 464465571 464466001 0.000000e+00 697
10 TraesCS4A01G255200 chr6D 94.651 430 22 1 1 429 14615737 14616166 0.000000e+00 665
11 TraesCS4A01G255200 chr3A 95.592 431 19 0 1 431 716637200 716636770 0.000000e+00 691
12 TraesCS4A01G255200 chrUn 95.360 431 20 0 1 431 83928842 83928412 0.000000e+00 686
13 TraesCS4A01G255200 chr3D 95.128 431 21 0 1 431 5040311 5039881 0.000000e+00 680
14 TraesCS4A01G255200 chr2B 94.919 433 20 2 1 432 790010742 790010311 0.000000e+00 676
15 TraesCS4A01G255200 chr5B 94.872 429 22 0 1 429 10581253 10581681 0.000000e+00 671
16 TraesCS4A01G255200 chr5B 94.664 431 23 0 1 431 680927445 680927875 0.000000e+00 669
17 TraesCS4A01G255200 chr3B 94.470 434 22 2 1 432 703424814 703424381 0.000000e+00 667


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G255200 chr4A 567469959 567472646 2687 False 4964.0 4964 100.0000 1 2688 1 chr4A.!!$F1 2687
1 TraesCS4A01G255200 chr4A 567035610 567038662 3052 True 781.5 1435 85.6090 484 1939 2 chr4A.!!$R1 1455
2 TraesCS4A01G255200 chr4D 35170685 35172909 2224 True 2422.0 2422 86.5880 449 2688 1 chr4D.!!$R1 2239
3 TraesCS4A01G255200 chr4D 35521822 35523536 1714 False 733.5 1317 86.4525 484 1939 2 chr4D.!!$F1 1455
4 TraesCS4A01G255200 chr4B 51748488 51749744 1256 False 1502.0 1502 88.2040 449 1736 1 chr4B.!!$F1 1287
5 TraesCS4A01G255200 chr4B 51121753 51125872 4119 True 1023.5 1925 86.0630 449 2314 2 chr4B.!!$R1 1865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
244 245 0.031721 ACGACAACTTCCCGACTGTC 59.968 55.0 0.0 0.0 35.82 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2135 3979 0.687757 CAAGGACGAGATGGGGAGGA 60.688 60.0 0.0 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.544697 TGGAATAAAGGTCTCCCCGC 59.455 55.000 0.00 0.00 38.74 6.13
20 21 0.179026 GGAATAAAGGTCTCCCCGCC 60.179 60.000 0.00 0.00 38.74 6.13
21 22 0.837940 GAATAAAGGTCTCCCCGCCT 59.162 55.000 0.00 0.00 38.74 5.52
22 23 2.044758 GAATAAAGGTCTCCCCGCCTA 58.955 52.381 0.00 0.00 38.74 3.93
23 24 1.718280 ATAAAGGTCTCCCCGCCTAG 58.282 55.000 0.00 0.00 38.74 3.02
24 25 1.047034 TAAAGGTCTCCCCGCCTAGC 61.047 60.000 0.00 0.00 38.74 3.42
25 26 4.862823 AGGTCTCCCCGCCTAGCC 62.863 72.222 0.00 0.00 38.74 3.93
26 27 4.862823 GGTCTCCCCGCCTAGCCT 62.863 72.222 0.00 0.00 0.00 4.58
27 28 3.228017 GTCTCCCCGCCTAGCCTC 61.228 72.222 0.00 0.00 0.00 4.70
28 29 4.541648 TCTCCCCGCCTAGCCTCC 62.542 72.222 0.00 0.00 0.00 4.30
32 33 3.782443 CCCGCCTAGCCTCCGTTT 61.782 66.667 0.00 0.00 0.00 3.60
33 34 2.202892 CCGCCTAGCCTCCGTTTC 60.203 66.667 0.00 0.00 0.00 2.78
34 35 2.582498 CGCCTAGCCTCCGTTTCG 60.582 66.667 0.00 0.00 0.00 3.46
35 36 2.890371 GCCTAGCCTCCGTTTCGA 59.110 61.111 0.00 0.00 0.00 3.71
36 37 1.518792 GCCTAGCCTCCGTTTCGAC 60.519 63.158 0.00 0.00 0.00 4.20
37 38 1.226603 CCTAGCCTCCGTTTCGACG 60.227 63.158 0.00 0.00 0.00 5.12
45 46 3.856508 CGTTTCGACGGTGCATCT 58.143 55.556 0.00 0.00 0.00 2.90
46 47 3.024423 CGTTTCGACGGTGCATCTA 57.976 52.632 0.00 0.00 0.00 1.98
47 48 0.914551 CGTTTCGACGGTGCATCTAG 59.085 55.000 0.00 0.00 0.00 2.43
48 49 0.645868 GTTTCGACGGTGCATCTAGC 59.354 55.000 0.00 0.00 45.96 3.42
59 60 0.940126 GCATCTAGCATCGTTGGTGG 59.060 55.000 8.40 5.61 44.79 4.61
60 61 1.586422 CATCTAGCATCGTTGGTGGG 58.414 55.000 8.40 2.07 34.79 4.61
61 62 0.179045 ATCTAGCATCGTTGGTGGGC 60.179 55.000 8.40 0.00 34.79 5.36
62 63 2.125310 TAGCATCGTTGGTGGGCG 60.125 61.111 8.40 0.00 34.79 6.13
63 64 2.852495 CTAGCATCGTTGGTGGGCGT 62.852 60.000 8.40 0.00 34.79 5.68
64 65 4.101790 GCATCGTTGGTGGGCGTG 62.102 66.667 0.00 0.00 0.00 5.34
65 66 2.668212 CATCGTTGGTGGGCGTGT 60.668 61.111 0.00 0.00 0.00 4.49
66 67 2.668212 ATCGTTGGTGGGCGTGTG 60.668 61.111 0.00 0.00 0.00 3.82
67 68 4.920112 TCGTTGGTGGGCGTGTGG 62.920 66.667 0.00 0.00 0.00 4.17
68 69 4.920112 CGTTGGTGGGCGTGTGGA 62.920 66.667 0.00 0.00 0.00 4.02
69 70 2.978010 GTTGGTGGGCGTGTGGAG 60.978 66.667 0.00 0.00 0.00 3.86
70 71 4.263572 TTGGTGGGCGTGTGGAGG 62.264 66.667 0.00 0.00 0.00 4.30
73 74 4.250305 GTGGGCGTGTGGAGGTGT 62.250 66.667 0.00 0.00 0.00 4.16
74 75 4.248842 TGGGCGTGTGGAGGTGTG 62.249 66.667 0.00 0.00 0.00 3.82
75 76 4.250305 GGGCGTGTGGAGGTGTGT 62.250 66.667 0.00 0.00 0.00 3.72
76 77 2.665185 GGCGTGTGGAGGTGTGTC 60.665 66.667 0.00 0.00 0.00 3.67
77 78 2.421739 GCGTGTGGAGGTGTGTCT 59.578 61.111 0.00 0.00 0.00 3.41
78 79 1.664965 GCGTGTGGAGGTGTGTCTC 60.665 63.158 0.00 0.00 0.00 3.36
83 84 4.436998 GGAGGTGTGTCTCCGGCG 62.437 72.222 0.00 0.00 43.19 6.46
84 85 4.436998 GAGGTGTGTCTCCGGCGG 62.437 72.222 22.51 22.51 0.00 6.13
85 86 4.988716 AGGTGTGTCTCCGGCGGA 62.989 66.667 29.14 29.14 0.00 5.54
86 87 3.771160 GGTGTGTCTCCGGCGGAT 61.771 66.667 31.23 0.00 0.00 4.18
87 88 2.202756 GTGTGTCTCCGGCGGATC 60.203 66.667 31.23 24.22 0.00 3.36
88 89 2.362503 TGTGTCTCCGGCGGATCT 60.363 61.111 31.23 0.00 0.00 2.75
89 90 1.077285 TGTGTCTCCGGCGGATCTA 60.077 57.895 31.23 15.38 0.00 1.98
90 91 0.467474 TGTGTCTCCGGCGGATCTAT 60.467 55.000 31.23 0.00 0.00 1.98
91 92 0.241481 GTGTCTCCGGCGGATCTATC 59.759 60.000 31.23 17.26 0.00 2.08
92 93 0.110678 TGTCTCCGGCGGATCTATCT 59.889 55.000 31.23 0.00 0.00 1.98
93 94 1.249407 GTCTCCGGCGGATCTATCTT 58.751 55.000 31.23 0.00 0.00 2.40
94 95 1.614413 GTCTCCGGCGGATCTATCTTT 59.386 52.381 31.23 0.00 0.00 2.52
95 96 1.613925 TCTCCGGCGGATCTATCTTTG 59.386 52.381 31.23 14.46 0.00 2.77
96 97 0.679505 TCCGGCGGATCTATCTTTGG 59.320 55.000 27.46 0.00 0.00 3.28
97 98 0.393077 CCGGCGGATCTATCTTTGGT 59.607 55.000 24.41 0.00 0.00 3.67
98 99 1.502231 CGGCGGATCTATCTTTGGTG 58.498 55.000 0.00 0.00 0.00 4.17
99 100 1.873903 CGGCGGATCTATCTTTGGTGG 60.874 57.143 0.00 0.00 0.00 4.61
100 101 1.416401 GGCGGATCTATCTTTGGTGGA 59.584 52.381 0.00 0.00 0.00 4.02
101 102 2.039084 GGCGGATCTATCTTTGGTGGAT 59.961 50.000 0.00 0.00 0.00 3.41
102 103 3.496870 GGCGGATCTATCTTTGGTGGATT 60.497 47.826 0.00 0.00 0.00 3.01
103 104 4.137543 GCGGATCTATCTTTGGTGGATTT 58.862 43.478 0.00 0.00 0.00 2.17
104 105 4.023707 GCGGATCTATCTTTGGTGGATTTG 60.024 45.833 0.00 0.00 0.00 2.32
105 106 4.023707 CGGATCTATCTTTGGTGGATTTGC 60.024 45.833 0.00 0.00 0.00 3.68
106 107 5.136105 GGATCTATCTTTGGTGGATTTGCT 58.864 41.667 0.00 0.00 0.00 3.91
107 108 5.240403 GGATCTATCTTTGGTGGATTTGCTC 59.760 44.000 0.00 0.00 0.00 4.26
108 109 4.191544 TCTATCTTTGGTGGATTTGCTCG 58.808 43.478 0.00 0.00 0.00 5.03
109 110 1.533625 TCTTTGGTGGATTTGCTCGG 58.466 50.000 0.00 0.00 0.00 4.63
110 111 1.073125 TCTTTGGTGGATTTGCTCGGA 59.927 47.619 0.00 0.00 0.00 4.55
111 112 2.094675 CTTTGGTGGATTTGCTCGGAT 58.905 47.619 0.00 0.00 0.00 4.18
112 113 1.750193 TTGGTGGATTTGCTCGGATC 58.250 50.000 0.00 0.00 0.00 3.36
113 114 0.911769 TGGTGGATTTGCTCGGATCT 59.088 50.000 0.00 0.00 0.00 2.75
114 115 1.134401 TGGTGGATTTGCTCGGATCTC 60.134 52.381 0.00 0.00 0.00 2.75
115 116 1.212616 GTGGATTTGCTCGGATCTCG 58.787 55.000 0.00 0.00 40.90 4.04
116 117 0.824109 TGGATTTGCTCGGATCTCGT 59.176 50.000 0.00 0.00 40.32 4.18
117 118 1.202417 TGGATTTGCTCGGATCTCGTC 60.202 52.381 0.00 0.00 40.32 4.20
118 119 1.124462 GATTTGCTCGGATCTCGTCG 58.876 55.000 0.00 0.00 40.32 5.12
119 120 0.456221 ATTTGCTCGGATCTCGTCGT 59.544 50.000 0.00 0.00 40.32 4.34
120 121 0.242825 TTTGCTCGGATCTCGTCGTT 59.757 50.000 0.00 0.00 40.32 3.85
121 122 0.456142 TTGCTCGGATCTCGTCGTTG 60.456 55.000 0.00 0.00 40.32 4.10
122 123 1.136984 GCTCGGATCTCGTCGTTGT 59.863 57.895 0.00 0.00 40.32 3.32
123 124 0.456312 GCTCGGATCTCGTCGTTGTT 60.456 55.000 0.00 0.00 40.32 2.83
124 125 1.536149 CTCGGATCTCGTCGTTGTTC 58.464 55.000 0.00 0.00 40.32 3.18
125 126 0.179207 TCGGATCTCGTCGTTGTTCG 60.179 55.000 0.00 0.00 40.32 3.95
126 127 0.453950 CGGATCTCGTCGTTGTTCGT 60.454 55.000 0.00 0.00 40.80 3.85
127 128 1.257539 GGATCTCGTCGTTGTTCGTC 58.742 55.000 0.00 0.00 40.80 4.20
128 129 1.135746 GGATCTCGTCGTTGTTCGTCT 60.136 52.381 0.00 0.00 40.80 4.18
129 130 2.094894 GGATCTCGTCGTTGTTCGTCTA 59.905 50.000 0.00 0.00 40.80 2.59
130 131 2.584166 TCTCGTCGTTGTTCGTCTAC 57.416 50.000 0.00 0.00 40.80 2.59
131 132 1.136529 TCTCGTCGTTGTTCGTCTACG 60.137 52.381 0.00 0.00 44.05 3.51
132 133 0.581529 TCGTCGTTGTTCGTCTACGT 59.418 50.000 2.02 0.00 43.41 3.57
133 134 1.003972 TCGTCGTTGTTCGTCTACGTT 60.004 47.619 0.00 0.00 43.41 3.99
134 135 1.376856 CGTCGTTGTTCGTCTACGTTC 59.623 52.381 0.00 0.00 43.41 3.95
135 136 1.376856 GTCGTTGTTCGTCTACGTTCG 59.623 52.381 0.00 0.00 43.41 3.95
136 137 1.003972 TCGTTGTTCGTCTACGTTCGT 60.004 47.619 0.00 2.91 43.41 3.85
137 138 1.119497 CGTTGTTCGTCTACGTTCGTG 59.881 52.381 8.14 0.00 39.58 4.35
138 139 2.111756 GTTGTTCGTCTACGTTCGTGT 58.888 47.619 8.14 0.00 40.80 4.49
139 140 1.745566 TGTTCGTCTACGTTCGTGTG 58.254 50.000 8.14 1.60 40.80 3.82
140 141 1.063912 TGTTCGTCTACGTTCGTGTGT 59.936 47.619 8.14 0.00 40.80 3.72
141 142 1.705559 GTTCGTCTACGTTCGTGTGTC 59.294 52.381 8.14 0.00 40.80 3.67
142 143 1.220529 TCGTCTACGTTCGTGTGTCT 58.779 50.000 8.14 0.00 40.80 3.41
143 144 1.599071 TCGTCTACGTTCGTGTGTCTT 59.401 47.619 8.14 0.00 40.80 3.01
144 145 1.967908 CGTCTACGTTCGTGTGTCTTC 59.032 52.381 8.14 0.00 34.11 2.87
145 146 1.967908 GTCTACGTTCGTGTGTCTTCG 59.032 52.381 8.14 0.00 0.00 3.79
146 147 1.069703 TCTACGTTCGTGTGTCTTCGG 60.070 52.381 8.14 0.00 0.00 4.30
147 148 0.040157 TACGTTCGTGTGTCTTCGGG 60.040 55.000 8.14 0.00 0.00 5.14
148 149 1.299620 CGTTCGTGTGTCTTCGGGT 60.300 57.895 0.00 0.00 0.00 5.28
149 150 0.872881 CGTTCGTGTGTCTTCGGGTT 60.873 55.000 0.00 0.00 0.00 4.11
150 151 0.580104 GTTCGTGTGTCTTCGGGTTG 59.420 55.000 0.00 0.00 0.00 3.77
151 152 0.460722 TTCGTGTGTCTTCGGGTTGA 59.539 50.000 0.00 0.00 0.00 3.18
152 153 0.460722 TCGTGTGTCTTCGGGTTGAA 59.539 50.000 0.00 0.00 34.74 2.69
153 154 1.069513 TCGTGTGTCTTCGGGTTGAAT 59.930 47.619 0.00 0.00 35.63 2.57
154 155 1.459592 CGTGTGTCTTCGGGTTGAATC 59.540 52.381 0.00 0.00 35.63 2.52
155 156 1.804748 GTGTGTCTTCGGGTTGAATCC 59.195 52.381 0.00 0.00 35.63 3.01
156 157 1.697432 TGTGTCTTCGGGTTGAATCCT 59.303 47.619 0.00 0.00 35.63 3.24
157 158 2.105821 TGTGTCTTCGGGTTGAATCCTT 59.894 45.455 0.00 0.00 35.63 3.36
158 159 2.742589 GTGTCTTCGGGTTGAATCCTTC 59.257 50.000 0.00 0.00 35.63 3.46
159 160 2.290071 TGTCTTCGGGTTGAATCCTTCC 60.290 50.000 0.00 0.00 35.63 3.46
160 161 1.982226 TCTTCGGGTTGAATCCTTCCA 59.018 47.619 0.00 0.00 35.63 3.53
161 162 2.373836 TCTTCGGGTTGAATCCTTCCAA 59.626 45.455 0.00 0.00 35.63 3.53
162 163 2.194201 TCGGGTTGAATCCTTCCAAC 57.806 50.000 0.00 0.00 41.24 3.77
168 169 3.671716 GTTGAATCCTTCCAACCTACGT 58.328 45.455 0.00 0.00 37.32 3.57
169 170 4.070009 GTTGAATCCTTCCAACCTACGTT 58.930 43.478 0.00 0.00 37.32 3.99
170 171 5.240121 GTTGAATCCTTCCAACCTACGTTA 58.760 41.667 0.00 0.00 37.32 3.18
171 172 5.687166 TGAATCCTTCCAACCTACGTTAT 57.313 39.130 0.00 0.00 0.00 1.89
172 173 6.057321 TGAATCCTTCCAACCTACGTTATT 57.943 37.500 0.00 0.00 0.00 1.40
173 174 6.110707 TGAATCCTTCCAACCTACGTTATTC 58.889 40.000 0.00 0.00 0.00 1.75
174 175 5.952347 ATCCTTCCAACCTACGTTATTCT 57.048 39.130 0.00 0.00 0.00 2.40
175 176 5.750352 TCCTTCCAACCTACGTTATTCTT 57.250 39.130 0.00 0.00 0.00 2.52
176 177 5.727434 TCCTTCCAACCTACGTTATTCTTC 58.273 41.667 0.00 0.00 0.00 2.87
177 178 5.246656 TCCTTCCAACCTACGTTATTCTTCA 59.753 40.000 0.00 0.00 0.00 3.02
178 179 6.070424 TCCTTCCAACCTACGTTATTCTTCAT 60.070 38.462 0.00 0.00 0.00 2.57
179 180 6.598064 CCTTCCAACCTACGTTATTCTTCATT 59.402 38.462 0.00 0.00 0.00 2.57
180 181 6.978343 TCCAACCTACGTTATTCTTCATTG 57.022 37.500 0.00 0.00 0.00 2.82
181 182 5.878116 TCCAACCTACGTTATTCTTCATTGG 59.122 40.000 0.00 0.00 35.29 3.16
182 183 5.448632 CCAACCTACGTTATTCTTCATTGGC 60.449 44.000 0.00 0.00 0.00 4.52
183 184 3.869246 ACCTACGTTATTCTTCATTGGCG 59.131 43.478 0.00 0.00 0.00 5.69
184 185 3.247648 CCTACGTTATTCTTCATTGGCGG 59.752 47.826 0.00 0.00 0.00 6.13
185 186 1.400494 ACGTTATTCTTCATTGGCGGC 59.600 47.619 0.00 0.00 0.00 6.53
186 187 1.594518 CGTTATTCTTCATTGGCGGCG 60.595 52.381 0.51 0.51 0.00 6.46
187 188 1.021202 TTATTCTTCATTGGCGGCGG 58.979 50.000 9.78 0.00 0.00 6.13
188 189 0.107410 TATTCTTCATTGGCGGCGGT 60.107 50.000 9.78 0.00 0.00 5.68
189 190 0.965363 ATTCTTCATTGGCGGCGGTT 60.965 50.000 9.78 0.00 0.00 4.44
190 191 1.861542 TTCTTCATTGGCGGCGGTTG 61.862 55.000 9.78 1.60 0.00 3.77
191 192 3.969642 CTTCATTGGCGGCGGTTGC 62.970 63.158 9.78 0.00 41.71 4.17
193 194 3.130819 CATTGGCGGCGGTTGCTA 61.131 61.111 9.78 0.00 42.25 3.49
194 195 2.124320 ATTGGCGGCGGTTGCTAT 60.124 55.556 9.78 0.00 42.25 2.97
195 196 1.752694 ATTGGCGGCGGTTGCTATT 60.753 52.632 9.78 0.00 42.25 1.73
196 197 1.724582 ATTGGCGGCGGTTGCTATTC 61.725 55.000 9.78 0.00 42.25 1.75
197 198 2.513897 GGCGGCGGTTGCTATTCT 60.514 61.111 9.78 0.00 42.25 2.40
198 199 2.709475 GCGGCGGTTGCTATTCTG 59.291 61.111 9.78 0.00 42.25 3.02
199 200 2.823829 GCGGCGGTTGCTATTCTGG 61.824 63.158 9.78 0.00 42.25 3.86
200 201 1.449601 CGGCGGTTGCTATTCTGGT 60.450 57.895 0.00 0.00 42.25 4.00
201 202 1.705337 CGGCGGTTGCTATTCTGGTG 61.705 60.000 0.00 0.00 42.25 4.17
202 203 1.429423 GCGGTTGCTATTCTGGTGC 59.571 57.895 0.00 0.00 38.39 5.01
203 204 1.715585 CGGTTGCTATTCTGGTGCG 59.284 57.895 0.00 0.00 0.00 5.34
204 205 1.019278 CGGTTGCTATTCTGGTGCGT 61.019 55.000 0.00 0.00 0.00 5.24
205 206 1.165270 GGTTGCTATTCTGGTGCGTT 58.835 50.000 0.00 0.00 0.00 4.84
206 207 1.135689 GGTTGCTATTCTGGTGCGTTG 60.136 52.381 0.00 0.00 0.00 4.10
207 208 1.135689 GTTGCTATTCTGGTGCGTTGG 60.136 52.381 0.00 0.00 0.00 3.77
208 209 0.036164 TGCTATTCTGGTGCGTTGGT 59.964 50.000 0.00 0.00 0.00 3.67
209 210 0.727398 GCTATTCTGGTGCGTTGGTC 59.273 55.000 0.00 0.00 0.00 4.02
210 211 1.943968 GCTATTCTGGTGCGTTGGTCA 60.944 52.381 0.00 0.00 0.00 4.02
211 212 2.632377 CTATTCTGGTGCGTTGGTCAT 58.368 47.619 0.00 0.00 0.00 3.06
212 213 2.779755 ATTCTGGTGCGTTGGTCATA 57.220 45.000 0.00 0.00 0.00 2.15
213 214 2.779755 TTCTGGTGCGTTGGTCATAT 57.220 45.000 0.00 0.00 0.00 1.78
214 215 2.022764 TCTGGTGCGTTGGTCATATG 57.977 50.000 0.00 0.00 0.00 1.78
215 216 1.016627 CTGGTGCGTTGGTCATATGG 58.983 55.000 2.13 0.00 0.00 2.74
216 217 0.393673 TGGTGCGTTGGTCATATGGG 60.394 55.000 2.13 0.00 0.00 4.00
217 218 1.101049 GGTGCGTTGGTCATATGGGG 61.101 60.000 2.13 0.00 0.00 4.96
218 219 1.453015 TGCGTTGGTCATATGGGGC 60.453 57.895 2.13 0.00 0.00 5.80
219 220 2.193536 GCGTTGGTCATATGGGGCC 61.194 63.158 2.13 0.00 0.00 5.80
220 221 1.531748 CGTTGGTCATATGGGGCCT 59.468 57.895 0.84 0.00 0.00 5.19
221 222 0.106719 CGTTGGTCATATGGGGCCTT 60.107 55.000 0.84 0.00 0.00 4.35
222 223 1.142060 CGTTGGTCATATGGGGCCTTA 59.858 52.381 0.84 0.00 0.00 2.69
223 224 2.810400 CGTTGGTCATATGGGGCCTTAG 60.810 54.545 0.84 0.00 0.00 2.18
224 225 0.771127 TGGTCATATGGGGCCTTAGC 59.229 55.000 0.84 0.00 38.76 3.09
225 226 0.771127 GGTCATATGGGGCCTTAGCA 59.229 55.000 0.84 0.00 42.56 3.49
226 227 1.545651 GGTCATATGGGGCCTTAGCAC 60.546 57.143 0.84 0.00 43.97 4.40
227 228 0.396435 TCATATGGGGCCTTAGCACG 59.604 55.000 0.84 0.00 46.55 5.34
228 229 0.396435 CATATGGGGCCTTAGCACGA 59.604 55.000 0.84 0.00 46.55 4.35
229 230 0.396811 ATATGGGGCCTTAGCACGAC 59.603 55.000 0.84 0.00 46.55 4.34
230 231 0.978667 TATGGGGCCTTAGCACGACA 60.979 55.000 0.84 0.00 46.55 4.35
231 232 1.847798 ATGGGGCCTTAGCACGACAA 61.848 55.000 0.84 0.00 46.55 3.18
232 233 2.038837 GGGGCCTTAGCACGACAAC 61.039 63.158 0.84 0.00 46.55 3.32
233 234 1.003718 GGGCCTTAGCACGACAACT 60.004 57.895 0.84 0.00 42.56 3.16
234 235 0.605589 GGGCCTTAGCACGACAACTT 60.606 55.000 0.84 0.00 42.56 2.66
235 236 0.796927 GGCCTTAGCACGACAACTTC 59.203 55.000 0.00 0.00 42.56 3.01
236 237 0.796927 GCCTTAGCACGACAACTTCC 59.203 55.000 0.00 0.00 39.53 3.46
237 238 1.439679 CCTTAGCACGACAACTTCCC 58.560 55.000 0.00 0.00 0.00 3.97
238 239 1.068474 CTTAGCACGACAACTTCCCG 58.932 55.000 0.00 0.00 0.00 5.14
239 240 0.675083 TTAGCACGACAACTTCCCGA 59.325 50.000 0.00 0.00 0.00 5.14
240 241 0.038892 TAGCACGACAACTTCCCGAC 60.039 55.000 0.00 0.00 0.00 4.79
241 242 1.300697 GCACGACAACTTCCCGACT 60.301 57.895 0.00 0.00 0.00 4.18
242 243 1.557443 GCACGACAACTTCCCGACTG 61.557 60.000 0.00 0.00 0.00 3.51
243 244 0.249322 CACGACAACTTCCCGACTGT 60.249 55.000 0.00 0.00 0.00 3.55
244 245 0.031721 ACGACAACTTCCCGACTGTC 59.968 55.000 0.00 0.00 35.82 3.51
245 246 0.314302 CGACAACTTCCCGACTGTCT 59.686 55.000 6.21 0.00 36.80 3.41
246 247 1.538512 CGACAACTTCCCGACTGTCTA 59.461 52.381 6.21 0.00 36.80 2.59
247 248 2.667724 CGACAACTTCCCGACTGTCTAC 60.668 54.545 6.21 0.00 36.80 2.59
248 249 2.557490 GACAACTTCCCGACTGTCTACT 59.443 50.000 6.21 0.00 36.18 2.57
249 250 3.755378 GACAACTTCCCGACTGTCTACTA 59.245 47.826 6.21 0.00 36.18 1.82
250 251 3.505293 ACAACTTCCCGACTGTCTACTAC 59.495 47.826 6.21 0.00 0.00 2.73
251 252 3.430042 ACTTCCCGACTGTCTACTACA 57.570 47.619 6.21 0.00 36.42 2.74
252 253 3.759581 ACTTCCCGACTGTCTACTACAA 58.240 45.455 6.21 0.00 37.74 2.41
253 254 3.505293 ACTTCCCGACTGTCTACTACAAC 59.495 47.826 6.21 0.00 37.74 3.32
254 255 3.144657 TCCCGACTGTCTACTACAACA 57.855 47.619 6.21 0.00 37.74 3.33
255 256 3.489355 TCCCGACTGTCTACTACAACAA 58.511 45.455 6.21 0.00 37.74 2.83
256 257 3.504906 TCCCGACTGTCTACTACAACAAG 59.495 47.826 6.21 0.00 37.74 3.16
257 258 3.255149 CCCGACTGTCTACTACAACAAGT 59.745 47.826 6.21 0.00 37.74 3.16
258 259 4.261909 CCCGACTGTCTACTACAACAAGTT 60.262 45.833 6.21 0.00 37.74 2.66
259 260 4.680110 CCGACTGTCTACTACAACAAGTTG 59.320 45.833 11.16 11.16 45.58 3.16
267 268 2.027460 CAACAAGTTGTGCCCGGC 59.973 61.111 9.79 1.04 35.92 6.13
268 269 2.123897 AACAAGTTGTGCCCGGCT 60.124 55.556 9.79 0.00 0.00 5.52
269 270 2.193536 AACAAGTTGTGCCCGGCTC 61.194 57.895 9.79 7.85 0.00 4.70
270 271 3.365265 CAAGTTGTGCCCGGCTCC 61.365 66.667 11.61 1.66 0.00 4.70
285 286 4.034246 TCCGGTGATGGAGAGGTG 57.966 61.111 0.00 0.00 33.05 4.00
286 287 1.386550 TCCGGTGATGGAGAGGTGA 59.613 57.895 0.00 0.00 33.05 4.02
287 288 0.032117 TCCGGTGATGGAGAGGTGAT 60.032 55.000 0.00 0.00 33.05 3.06
288 289 0.105593 CCGGTGATGGAGAGGTGATG 59.894 60.000 0.00 0.00 0.00 3.07
289 290 1.114627 CGGTGATGGAGAGGTGATGA 58.885 55.000 0.00 0.00 0.00 2.92
290 291 1.202463 CGGTGATGGAGAGGTGATGAC 60.202 57.143 0.00 0.00 0.00 3.06
291 292 1.202463 GGTGATGGAGAGGTGATGACG 60.202 57.143 0.00 0.00 0.00 4.35
292 293 1.114627 TGATGGAGAGGTGATGACGG 58.885 55.000 0.00 0.00 0.00 4.79
293 294 0.249657 GATGGAGAGGTGATGACGGC 60.250 60.000 0.00 0.00 0.00 5.68
294 295 2.021068 ATGGAGAGGTGATGACGGCG 62.021 60.000 4.80 4.80 0.00 6.46
295 296 2.105128 GAGAGGTGATGACGGCGG 59.895 66.667 13.24 0.00 0.00 6.13
296 297 4.148825 AGAGGTGATGACGGCGGC 62.149 66.667 13.24 9.67 0.00 6.53
314 315 3.858989 GCGCCTTCAGCTCGCTTC 61.859 66.667 9.28 0.00 44.79 3.86
315 316 2.433145 CGCCTTCAGCTCGCTTCA 60.433 61.111 0.00 0.00 40.39 3.02
316 317 2.451167 CGCCTTCAGCTCGCTTCAG 61.451 63.158 0.00 0.00 40.39 3.02
317 318 1.375268 GCCTTCAGCTCGCTTCAGT 60.375 57.895 0.00 0.00 38.99 3.41
318 319 1.633852 GCCTTCAGCTCGCTTCAGTG 61.634 60.000 0.00 0.00 38.99 3.66
319 320 1.633852 CCTTCAGCTCGCTTCAGTGC 61.634 60.000 0.00 0.00 0.00 4.40
320 321 0.669932 CTTCAGCTCGCTTCAGTGCT 60.670 55.000 0.00 0.00 41.03 4.40
321 322 0.250038 TTCAGCTCGCTTCAGTGCTT 60.250 50.000 0.00 0.00 38.70 3.91
322 323 0.947660 TCAGCTCGCTTCAGTGCTTG 60.948 55.000 0.00 0.00 38.70 4.01
323 324 1.070445 AGCTCGCTTCAGTGCTTGT 59.930 52.632 0.00 0.00 37.66 3.16
324 325 0.318441 AGCTCGCTTCAGTGCTTGTA 59.682 50.000 0.00 0.00 37.66 2.41
325 326 1.148310 GCTCGCTTCAGTGCTTGTAA 58.852 50.000 0.00 0.00 0.00 2.41
326 327 1.734465 GCTCGCTTCAGTGCTTGTAAT 59.266 47.619 0.00 0.00 0.00 1.89
327 328 2.222908 GCTCGCTTCAGTGCTTGTAATC 60.223 50.000 0.00 0.00 0.00 1.75
328 329 1.992667 TCGCTTCAGTGCTTGTAATCG 59.007 47.619 0.00 0.00 0.00 3.34
329 330 1.726791 CGCTTCAGTGCTTGTAATCGT 59.273 47.619 0.00 0.00 0.00 3.73
330 331 2.222596 CGCTTCAGTGCTTGTAATCGTC 60.223 50.000 0.00 0.00 0.00 4.20
331 332 2.222596 GCTTCAGTGCTTGTAATCGTCG 60.223 50.000 0.00 0.00 0.00 5.12
332 333 1.346365 TCAGTGCTTGTAATCGTCGC 58.654 50.000 0.00 0.00 0.00 5.19
333 334 1.067846 TCAGTGCTTGTAATCGTCGCT 60.068 47.619 0.00 0.00 0.00 4.93
334 335 2.162809 TCAGTGCTTGTAATCGTCGCTA 59.837 45.455 0.00 0.00 0.00 4.26
335 336 2.531912 CAGTGCTTGTAATCGTCGCTAG 59.468 50.000 0.00 0.00 0.00 3.42
336 337 1.852895 GTGCTTGTAATCGTCGCTAGG 59.147 52.381 0.00 0.00 0.00 3.02
337 338 1.475280 TGCTTGTAATCGTCGCTAGGT 59.525 47.619 0.00 0.00 0.00 3.08
338 339 1.852895 GCTTGTAATCGTCGCTAGGTG 59.147 52.381 0.00 0.00 0.00 4.00
339 340 2.460918 CTTGTAATCGTCGCTAGGTGG 58.539 52.381 0.00 0.00 0.00 4.61
340 341 1.466856 TGTAATCGTCGCTAGGTGGT 58.533 50.000 0.00 0.00 0.00 4.16
341 342 1.402968 TGTAATCGTCGCTAGGTGGTC 59.597 52.381 0.00 0.00 0.00 4.02
342 343 1.674962 GTAATCGTCGCTAGGTGGTCT 59.325 52.381 0.00 0.00 0.00 3.85
343 344 2.048444 AATCGTCGCTAGGTGGTCTA 57.952 50.000 0.00 0.00 0.00 2.59
344 345 1.307097 ATCGTCGCTAGGTGGTCTAC 58.693 55.000 0.00 0.00 0.00 2.59
345 346 1.086067 TCGTCGCTAGGTGGTCTACG 61.086 60.000 0.00 0.00 0.00 3.51
346 347 1.726265 GTCGCTAGGTGGTCTACGG 59.274 63.158 0.00 0.00 0.00 4.02
347 348 0.745845 GTCGCTAGGTGGTCTACGGA 60.746 60.000 0.00 0.00 0.00 4.69
348 349 0.182061 TCGCTAGGTGGTCTACGGAT 59.818 55.000 0.00 0.00 0.00 4.18
349 350 0.592148 CGCTAGGTGGTCTACGGATC 59.408 60.000 0.00 0.00 0.00 3.36
350 351 1.814634 CGCTAGGTGGTCTACGGATCT 60.815 57.143 0.00 0.00 0.00 2.75
351 352 1.609555 GCTAGGTGGTCTACGGATCTG 59.390 57.143 0.00 0.00 0.00 2.90
352 353 2.231529 CTAGGTGGTCTACGGATCTGG 58.768 57.143 6.47 0.00 0.00 3.86
353 354 0.629596 AGGTGGTCTACGGATCTGGA 59.370 55.000 6.47 0.00 0.00 3.86
354 355 1.218196 AGGTGGTCTACGGATCTGGAT 59.782 52.381 6.47 0.00 0.00 3.41
355 356 1.341531 GGTGGTCTACGGATCTGGATG 59.658 57.143 6.47 0.00 0.00 3.51
356 357 2.032620 GTGGTCTACGGATCTGGATGT 58.967 52.381 6.47 0.00 0.00 3.06
357 358 3.220110 GTGGTCTACGGATCTGGATGTA 58.780 50.000 6.47 0.00 0.00 2.29
358 359 3.635373 GTGGTCTACGGATCTGGATGTAA 59.365 47.826 6.47 0.00 0.00 2.41
359 360 4.281182 GTGGTCTACGGATCTGGATGTAAT 59.719 45.833 6.47 0.00 0.00 1.89
360 361 4.899457 TGGTCTACGGATCTGGATGTAATT 59.101 41.667 6.47 0.00 0.00 1.40
361 362 5.365605 TGGTCTACGGATCTGGATGTAATTT 59.634 40.000 6.47 0.00 0.00 1.82
362 363 6.126883 TGGTCTACGGATCTGGATGTAATTTT 60.127 38.462 6.47 0.00 0.00 1.82
363 364 6.766467 GGTCTACGGATCTGGATGTAATTTTT 59.234 38.462 6.47 0.00 0.00 1.94
364 365 7.929785 GGTCTACGGATCTGGATGTAATTTTTA 59.070 37.037 6.47 0.00 0.00 1.52
365 366 9.490379 GTCTACGGATCTGGATGTAATTTTTAT 57.510 33.333 6.47 0.00 0.00 1.40
374 375 9.717942 TCTGGATGTAATTTTTATTTTTGGTGG 57.282 29.630 0.00 0.00 0.00 4.61
375 376 9.500785 CTGGATGTAATTTTTATTTTTGGTGGT 57.499 29.630 0.00 0.00 0.00 4.16
376 377 9.495572 TGGATGTAATTTTTATTTTTGGTGGTC 57.504 29.630 0.00 0.00 0.00 4.02
377 378 8.652463 GGATGTAATTTTTATTTTTGGTGGTCG 58.348 33.333 0.00 0.00 0.00 4.79
378 379 9.198837 GATGTAATTTTTATTTTTGGTGGTCGT 57.801 29.630 0.00 0.00 0.00 4.34
379 380 8.943909 TGTAATTTTTATTTTTGGTGGTCGTT 57.056 26.923 0.00 0.00 0.00 3.85
385 386 9.680315 TTTTTATTTTTGGTGGTCGTTATACTG 57.320 29.630 0.00 0.00 0.00 2.74
386 387 4.752661 TTTTTGGTGGTCGTTATACTGC 57.247 40.909 0.00 0.00 0.00 4.40
387 388 2.389962 TTGGTGGTCGTTATACTGCC 57.610 50.000 0.00 0.00 0.00 4.85
388 389 1.268066 TGGTGGTCGTTATACTGCCA 58.732 50.000 0.00 0.00 0.00 4.92
389 390 1.834896 TGGTGGTCGTTATACTGCCAT 59.165 47.619 0.00 0.00 0.00 4.40
390 391 2.210116 GGTGGTCGTTATACTGCCATG 58.790 52.381 0.00 0.00 0.00 3.66
391 392 2.159014 GGTGGTCGTTATACTGCCATGA 60.159 50.000 0.00 0.00 0.00 3.07
392 393 3.494398 GGTGGTCGTTATACTGCCATGAT 60.494 47.826 0.00 0.00 0.00 2.45
393 394 4.127171 GTGGTCGTTATACTGCCATGATT 58.873 43.478 0.00 0.00 0.00 2.57
394 395 4.024893 GTGGTCGTTATACTGCCATGATTG 60.025 45.833 0.00 0.00 0.00 2.67
395 396 4.141824 TGGTCGTTATACTGCCATGATTGA 60.142 41.667 0.00 0.00 0.00 2.57
396 397 4.814234 GGTCGTTATACTGCCATGATTGAA 59.186 41.667 0.00 0.00 0.00 2.69
397 398 5.050091 GGTCGTTATACTGCCATGATTGAAG 60.050 44.000 0.00 0.00 0.00 3.02
398 399 5.753438 GTCGTTATACTGCCATGATTGAAGA 59.247 40.000 0.00 0.00 0.00 2.87
399 400 6.425114 GTCGTTATACTGCCATGATTGAAGAT 59.575 38.462 0.00 0.00 0.00 2.40
400 401 6.424812 TCGTTATACTGCCATGATTGAAGATG 59.575 38.462 0.00 0.00 0.00 2.90
401 402 6.424812 CGTTATACTGCCATGATTGAAGATGA 59.575 38.462 0.00 0.00 0.00 2.92
402 403 7.041848 CGTTATACTGCCATGATTGAAGATGAA 60.042 37.037 0.00 0.00 0.00 2.57
403 404 8.790718 GTTATACTGCCATGATTGAAGATGAAT 58.209 33.333 0.00 0.00 0.00 2.57
405 406 6.879276 ACTGCCATGATTGAAGATGAATAG 57.121 37.500 0.00 0.00 0.00 1.73
406 407 6.598503 ACTGCCATGATTGAAGATGAATAGA 58.401 36.000 0.00 0.00 0.00 1.98
407 408 7.232188 ACTGCCATGATTGAAGATGAATAGAT 58.768 34.615 0.00 0.00 0.00 1.98
408 409 7.724506 ACTGCCATGATTGAAGATGAATAGATT 59.275 33.333 0.00 0.00 0.00 2.40
409 410 7.882179 TGCCATGATTGAAGATGAATAGATTG 58.118 34.615 0.00 0.00 0.00 2.67
410 411 7.039993 TGCCATGATTGAAGATGAATAGATTGG 60.040 37.037 0.00 0.00 0.00 3.16
411 412 7.176165 GCCATGATTGAAGATGAATAGATTGGA 59.824 37.037 0.00 0.00 0.00 3.53
412 413 9.074576 CCATGATTGAAGATGAATAGATTGGAA 57.925 33.333 0.00 0.00 0.00 3.53
414 415 9.863650 ATGATTGAAGATGAATAGATTGGAAGT 57.136 29.630 0.00 0.00 0.00 3.01
415 416 9.690913 TGATTGAAGATGAATAGATTGGAAGTT 57.309 29.630 0.00 0.00 0.00 2.66
420 421 9.495754 GAAGATGAATAGATTGGAAGTTTTTCG 57.504 33.333 0.00 0.00 33.98 3.46
421 422 8.567285 AGATGAATAGATTGGAAGTTTTTCGT 57.433 30.769 0.00 0.00 33.98 3.85
422 423 9.667107 AGATGAATAGATTGGAAGTTTTTCGTA 57.333 29.630 0.00 0.00 33.98 3.43
462 463 1.913317 GATGCACGCCATCTTTTTCC 58.087 50.000 8.86 0.00 45.58 3.13
469 470 1.135689 CGCCATCTTTTTCCGACAAGG 60.136 52.381 0.00 0.00 42.97 3.61
490 497 9.541884 ACAAGGACATATTTATACCCTTTTTGT 57.458 29.630 0.00 0.00 32.21 2.83
603 633 1.291877 GATCGCACAAGACGCAACCT 61.292 55.000 0.00 0.00 0.00 3.50
624 655 0.316196 GTTAAGATGGCGATGCGTGC 60.316 55.000 0.00 0.00 0.00 5.34
675 714 1.514443 GTCCTCTGAGCACGTACGC 60.514 63.158 16.72 0.00 0.00 4.42
686 725 2.572647 CGTACGCACGGAGTCGAC 60.573 66.667 7.70 7.70 41.61 4.20
688 727 3.434319 TACGCACGGAGTCGACCC 61.434 66.667 13.01 12.26 41.61 4.46
694 733 2.678934 CGGAGTCGACCCCTTGGA 60.679 66.667 14.73 0.00 39.00 3.53
702 741 1.152673 GACCCCTTGGATGCCCATC 60.153 63.158 0.00 0.00 43.12 3.51
787 828 0.798776 GTTCAGTGTTCCTGGCATCG 59.201 55.000 0.00 0.00 41.83 3.84
789 830 1.191489 TCAGTGTTCCTGGCATCGGA 61.191 55.000 0.00 0.00 41.83 4.55
790 831 1.021390 CAGTGTTCCTGGCATCGGAC 61.021 60.000 0.00 0.00 37.54 4.79
841 892 4.961511 TGGACGAGCACGCACACC 62.962 66.667 2.62 3.28 43.96 4.16
927 983 1.007238 TCCCAAAGGAACACCAACCAA 59.993 47.619 0.00 0.00 40.08 3.67
971 1027 3.365265 GCCACGGCAAAGGGTGAG 61.365 66.667 2.36 0.00 41.49 3.51
976 1032 2.464459 CGGCAAAGGGTGAGATCGC 61.464 63.158 0.00 0.00 0.00 4.58
1011 1067 3.431572 GCAGAGCTCCTAGATAAAATGCG 59.568 47.826 10.93 0.00 0.00 4.73
1059 1115 4.135153 CACCTCCTCGTGCCTCCG 62.135 72.222 0.00 0.00 0.00 4.63
1087 1143 3.875838 GGATCGATCCAAGAGACGG 57.124 57.895 34.65 0.00 46.38 4.79
1088 1144 1.319541 GGATCGATCCAAGAGACGGA 58.680 55.000 34.65 0.00 46.38 4.69
1089 1145 1.268352 GGATCGATCCAAGAGACGGAG 59.732 57.143 34.65 0.00 46.38 4.63
1090 1146 2.222886 GATCGATCCAAGAGACGGAGA 58.777 52.381 14.76 0.00 35.56 3.71
1091 1147 2.124277 TCGATCCAAGAGACGGAGAA 57.876 50.000 0.00 0.00 35.56 2.87
1092 1148 2.017782 TCGATCCAAGAGACGGAGAAG 58.982 52.381 0.00 0.00 35.56 2.85
1099 1155 0.321741 AGAGACGGAGAAGCAGACGA 60.322 55.000 0.00 0.00 0.00 4.20
1213 1269 3.108343 CACGACGGCCTAGACGAT 58.892 61.111 12.69 0.00 35.20 3.73
1219 1275 2.109181 GGCCTAGACGATGTGCCC 59.891 66.667 0.00 0.00 36.07 5.36
1240 1299 3.491652 GAGTTCGCCAAGCCGCTC 61.492 66.667 0.00 0.00 0.00 5.03
1305 1364 2.270986 GGGCAGCCAGTTCCACTTG 61.271 63.158 15.19 0.00 0.00 3.16
1384 1443 3.912907 CCGTTCCTCGCCGCCTAT 61.913 66.667 0.00 0.00 38.35 2.57
1622 1684 2.574018 CCCAGACTGCACCTGTCGA 61.574 63.158 9.68 0.00 37.39 4.20
1627 1689 2.031012 CTGCACCTGTCGAGGCAA 59.969 61.111 0.00 0.00 44.33 4.52
1797 1994 6.476380 CAGTGTGTAAAATTGTGCAGAAACAT 59.524 34.615 0.00 0.00 0.00 2.71
1866 3701 3.813166 ACGAAACATGAAATCAACCGAGT 59.187 39.130 0.00 0.00 0.00 4.18
1886 3723 0.251916 TTTGCTACATCCACGGAGGG 59.748 55.000 2.40 0.00 38.24 4.30
1952 3794 2.505405 GAAGCGTTTTTCTCCTCCCTT 58.495 47.619 0.00 0.00 0.00 3.95
1955 3797 2.106684 AGCGTTTTTCTCCTCCCTTTCT 59.893 45.455 0.00 0.00 0.00 2.52
1967 3811 2.504996 CTCCCTTTCTCTCCATTCTGCT 59.495 50.000 0.00 0.00 0.00 4.24
1972 3816 4.567327 CCTTTCTCTCCATTCTGCTTCCTT 60.567 45.833 0.00 0.00 0.00 3.36
1976 3820 2.848694 TCTCCATTCTGCTTCCTTCCAT 59.151 45.455 0.00 0.00 0.00 3.41
1999 3843 0.948050 AGATCATGGGTCCCCTCTCT 59.052 55.000 5.13 0.00 36.94 3.10
2003 3847 0.264359 CATGGGTCCCCTCTCTCTCT 59.736 60.000 5.13 0.00 36.94 3.10
2004 3848 0.560688 ATGGGTCCCCTCTCTCTCTC 59.439 60.000 5.13 0.00 36.94 3.20
2026 3870 1.193203 GTCCATCGCATCAGCAATACG 59.807 52.381 0.00 0.00 42.27 3.06
2032 3876 1.606480 CGCATCAGCAATACGAGGGAT 60.606 52.381 0.00 0.00 42.27 3.85
2058 3902 0.392060 AGTTTCGGACCGGTAATGGC 60.392 55.000 15.25 0.00 0.00 4.40
2068 3912 1.727467 GGTAATGGCACGGTCATGC 59.273 57.895 0.00 0.00 45.34 4.06
2099 3943 2.496470 AGGTTCTGGTATTCAGTCGTCC 59.504 50.000 0.00 0.00 43.76 4.79
2115 3959 2.034066 CCGTGGTGAGGCAATGGT 59.966 61.111 0.00 0.00 0.00 3.55
2125 3969 2.509131 TGAGGCAATGGTACCATCATCA 59.491 45.455 27.49 23.62 35.31 3.07
2126 3970 3.053768 TGAGGCAATGGTACCATCATCAA 60.054 43.478 27.49 10.90 35.31 2.57
2133 3977 4.582973 TGGTACCATCATCAACATGGAA 57.417 40.909 11.60 0.00 43.32 3.53
2134 3978 4.525996 TGGTACCATCATCAACATGGAAG 58.474 43.478 11.60 0.00 43.32 3.46
2135 3979 4.018506 TGGTACCATCATCAACATGGAAGT 60.019 41.667 11.60 0.00 43.32 3.01
2136 3980 4.576463 GGTACCATCATCAACATGGAAGTC 59.424 45.833 7.15 0.00 43.32 3.01
2137 3981 3.624777 ACCATCATCAACATGGAAGTCC 58.375 45.455 5.70 0.00 43.32 3.85
2162 5024 1.399440 CATCTCGTCCTTGTTGCCATG 59.601 52.381 0.00 0.00 0.00 3.66
2174 5044 2.575461 GCCATGGTGCTTCTTGGC 59.425 61.111 14.67 16.34 46.02 4.52
2262 6367 4.472833 AGATTTATCTTGGTGGAGCTGTCT 59.527 41.667 0.00 0.00 31.97 3.41
2287 6392 0.321919 AGCGGATGATGCAGTTGTGT 60.322 50.000 0.00 0.00 33.85 3.72
2297 6402 1.339535 TGCAGTTGTGTGTCTTGGTCA 60.340 47.619 0.00 0.00 0.00 4.02
2319 6424 2.771943 TCCGGCTCCAATTCTGACTAAT 59.228 45.455 0.00 0.00 0.00 1.73
2325 6430 5.591877 GGCTCCAATTCTGACTAATGAATGT 59.408 40.000 0.00 0.00 33.72 2.71
2346 6451 2.485122 GCAATTCCGGCCTCGTTG 59.515 61.111 0.00 1.83 33.95 4.10
2371 6476 2.277084 ACGTGTGAGAGTTGTGTTTCC 58.723 47.619 0.00 0.00 0.00 3.13
2414 6519 0.753262 ACGTCATACATGCCCTCTCC 59.247 55.000 0.00 0.00 0.00 3.71
2435 6540 0.650512 AGGCGTCGATTTGTTATGCG 59.349 50.000 0.00 0.00 0.00 4.73
2436 6541 0.315869 GGCGTCGATTTGTTATGCGG 60.316 55.000 0.00 0.00 0.00 5.69
2441 6546 1.135053 TCGATTTGTTATGCGGACCGA 60.135 47.619 20.50 2.93 0.00 4.69
2442 6547 1.005347 CGATTTGTTATGCGGACCGAC 60.005 52.381 20.50 9.82 0.00 4.79
2444 6549 1.015085 TTTGTTATGCGGACCGACGG 61.015 55.000 20.50 13.61 0.00 4.79
2474 6579 4.436242 TCTTCTGGTCTACATTGACGAC 57.564 45.455 0.00 0.00 37.81 4.34
2477 6582 5.708697 TCTTCTGGTCTACATTGACGACTTA 59.291 40.000 0.00 0.00 37.81 2.24
2478 6583 6.377429 TCTTCTGGTCTACATTGACGACTTAT 59.623 38.462 0.00 0.00 37.81 1.73
2481 6586 4.707934 TGGTCTACATTGACGACTTATCCA 59.292 41.667 0.00 0.00 37.81 3.41
2521 6626 3.230134 TCATGCCTTAACAAGTTTGCCT 58.770 40.909 0.00 0.00 0.00 4.75
2522 6627 3.640967 TCATGCCTTAACAAGTTTGCCTT 59.359 39.130 0.00 0.00 0.00 4.35
2535 6640 0.036732 TTGCCTTGCCGAGATTGAGT 59.963 50.000 0.00 0.00 0.00 3.41
2567 6672 2.285834 GCAACGAGATTCACCAATAGCG 60.286 50.000 0.00 0.00 0.00 4.26
2569 6674 0.504384 CGAGATTCACCAATAGCGCG 59.496 55.000 0.00 0.00 0.00 6.86
2570 6675 0.861837 GAGATTCACCAATAGCGCGG 59.138 55.000 8.83 0.00 0.00 6.46
2576 6681 1.451207 ACCAATAGCGCGGCATCAA 60.451 52.632 8.83 0.00 0.00 2.57
2617 6723 7.499232 AGAAGACTTCGGTATCCCAATTATTTG 59.501 37.037 9.53 0.00 34.02 2.32
2658 6764 5.646692 TGTAAGAGCATTTATAAGGGCCT 57.353 39.130 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.228017 GAGGCTAGGCGGGGAGAC 61.228 72.222 11.10 0.00 0.00 3.36
11 12 4.541648 GGAGGCTAGGCGGGGAGA 62.542 72.222 11.10 0.00 0.00 3.71
15 16 3.735037 GAAACGGAGGCTAGGCGGG 62.735 68.421 11.10 6.69 0.00 6.13
16 17 2.202892 GAAACGGAGGCTAGGCGG 60.203 66.667 11.10 7.05 0.00 6.13
17 18 2.582498 CGAAACGGAGGCTAGGCG 60.582 66.667 11.10 0.00 0.00 5.52
18 19 1.518792 GTCGAAACGGAGGCTAGGC 60.519 63.158 8.55 8.55 0.00 3.93
19 20 1.226603 CGTCGAAACGGAGGCTAGG 60.227 63.158 0.00 0.00 45.21 3.02
20 21 4.379221 CGTCGAAACGGAGGCTAG 57.621 61.111 0.00 0.00 45.21 3.42
28 29 2.957267 GCTAGATGCACCGTCGAAACG 61.957 57.143 0.00 0.00 44.24 3.60
29 30 0.645868 GCTAGATGCACCGTCGAAAC 59.354 55.000 0.00 0.00 42.31 2.78
30 31 3.044809 GCTAGATGCACCGTCGAAA 57.955 52.632 0.00 0.00 42.31 3.46
31 32 4.806571 GCTAGATGCACCGTCGAA 57.193 55.556 0.00 0.00 42.31 3.71
40 41 0.940126 CCACCAACGATGCTAGATGC 59.060 55.000 0.00 0.00 43.25 3.91
41 42 1.586422 CCCACCAACGATGCTAGATG 58.414 55.000 0.00 0.00 0.00 2.90
42 43 0.179045 GCCCACCAACGATGCTAGAT 60.179 55.000 0.00 0.00 0.00 1.98
43 44 1.220749 GCCCACCAACGATGCTAGA 59.779 57.895 0.00 0.00 0.00 2.43
44 45 2.173669 CGCCCACCAACGATGCTAG 61.174 63.158 0.00 0.00 0.00 3.42
45 46 2.125310 CGCCCACCAACGATGCTA 60.125 61.111 0.00 0.00 0.00 3.49
46 47 4.329545 ACGCCCACCAACGATGCT 62.330 61.111 0.00 0.00 0.00 3.79
47 48 4.101790 CACGCCCACCAACGATGC 62.102 66.667 0.00 0.00 0.00 3.91
48 49 2.668212 ACACGCCCACCAACGATG 60.668 61.111 0.00 0.00 0.00 3.84
49 50 2.668212 CACACGCCCACCAACGAT 60.668 61.111 0.00 0.00 0.00 3.73
50 51 4.920112 CCACACGCCCACCAACGA 62.920 66.667 0.00 0.00 0.00 3.85
51 52 4.920112 TCCACACGCCCACCAACG 62.920 66.667 0.00 0.00 0.00 4.10
52 53 2.978010 CTCCACACGCCCACCAAC 60.978 66.667 0.00 0.00 0.00 3.77
53 54 4.263572 CCTCCACACGCCCACCAA 62.264 66.667 0.00 0.00 0.00 3.67
56 57 4.250305 ACACCTCCACACGCCCAC 62.250 66.667 0.00 0.00 0.00 4.61
57 58 4.248842 CACACCTCCACACGCCCA 62.249 66.667 0.00 0.00 0.00 5.36
58 59 4.250305 ACACACCTCCACACGCCC 62.250 66.667 0.00 0.00 0.00 6.13
59 60 2.665185 GACACACCTCCACACGCC 60.665 66.667 0.00 0.00 0.00 5.68
60 61 1.664965 GAGACACACCTCCACACGC 60.665 63.158 0.00 0.00 0.00 5.34
61 62 4.655527 GAGACACACCTCCACACG 57.344 61.111 0.00 0.00 0.00 4.49
67 68 4.436998 CCGCCGGAGACACACCTC 62.437 72.222 5.05 0.00 0.00 3.85
68 69 4.988716 TCCGCCGGAGACACACCT 62.989 66.667 5.05 0.00 0.00 4.00
69 70 3.718210 GATCCGCCGGAGACACACC 62.718 68.421 13.12 0.00 34.05 4.16
70 71 1.381928 TAGATCCGCCGGAGACACAC 61.382 60.000 13.12 0.00 34.05 3.82
71 72 0.467474 ATAGATCCGCCGGAGACACA 60.467 55.000 13.12 1.27 34.05 3.72
72 73 0.241481 GATAGATCCGCCGGAGACAC 59.759 60.000 13.12 3.15 34.05 3.67
73 74 0.110678 AGATAGATCCGCCGGAGACA 59.889 55.000 13.12 0.00 34.05 3.41
74 75 1.249407 AAGATAGATCCGCCGGAGAC 58.751 55.000 13.12 8.53 34.05 3.36
75 76 1.613925 CAAAGATAGATCCGCCGGAGA 59.386 52.381 13.12 0.00 34.05 3.71
76 77 1.337260 CCAAAGATAGATCCGCCGGAG 60.337 57.143 13.12 0.00 34.05 4.63
77 78 0.679505 CCAAAGATAGATCCGCCGGA 59.320 55.000 8.97 8.97 35.55 5.14
78 79 0.393077 ACCAAAGATAGATCCGCCGG 59.607 55.000 0.00 0.00 0.00 6.13
79 80 1.502231 CACCAAAGATAGATCCGCCG 58.498 55.000 0.00 0.00 0.00 6.46
80 81 1.416401 TCCACCAAAGATAGATCCGCC 59.584 52.381 0.00 0.00 0.00 6.13
81 82 2.910688 TCCACCAAAGATAGATCCGC 57.089 50.000 0.00 0.00 0.00 5.54
82 83 4.023707 GCAAATCCACCAAAGATAGATCCG 60.024 45.833 0.00 0.00 0.00 4.18
83 84 5.136105 AGCAAATCCACCAAAGATAGATCC 58.864 41.667 0.00 0.00 0.00 3.36
84 85 5.049818 CGAGCAAATCCACCAAAGATAGATC 60.050 44.000 0.00 0.00 0.00 2.75
85 86 4.818546 CGAGCAAATCCACCAAAGATAGAT 59.181 41.667 0.00 0.00 0.00 1.98
86 87 4.191544 CGAGCAAATCCACCAAAGATAGA 58.808 43.478 0.00 0.00 0.00 1.98
87 88 3.313526 CCGAGCAAATCCACCAAAGATAG 59.686 47.826 0.00 0.00 0.00 2.08
88 89 3.054728 TCCGAGCAAATCCACCAAAGATA 60.055 43.478 0.00 0.00 0.00 1.98
89 90 2.094675 CCGAGCAAATCCACCAAAGAT 58.905 47.619 0.00 0.00 0.00 2.40
90 91 1.073125 TCCGAGCAAATCCACCAAAGA 59.927 47.619 0.00 0.00 0.00 2.52
91 92 1.533625 TCCGAGCAAATCCACCAAAG 58.466 50.000 0.00 0.00 0.00 2.77
92 93 2.091541 GATCCGAGCAAATCCACCAAA 58.908 47.619 0.00 0.00 0.00 3.28
93 94 1.281867 AGATCCGAGCAAATCCACCAA 59.718 47.619 0.00 0.00 0.00 3.67
94 95 0.911769 AGATCCGAGCAAATCCACCA 59.088 50.000 0.00 0.00 0.00 4.17
95 96 1.587547 GAGATCCGAGCAAATCCACC 58.412 55.000 0.00 0.00 0.00 4.61
96 97 1.212616 CGAGATCCGAGCAAATCCAC 58.787 55.000 0.00 0.00 41.76 4.02
97 98 0.824109 ACGAGATCCGAGCAAATCCA 59.176 50.000 10.05 0.00 41.76 3.41
98 99 1.492720 GACGAGATCCGAGCAAATCC 58.507 55.000 10.05 0.00 41.76 3.01
99 100 1.124462 CGACGAGATCCGAGCAAATC 58.876 55.000 10.05 0.00 41.76 2.17
100 101 0.456221 ACGACGAGATCCGAGCAAAT 59.544 50.000 0.00 0.00 41.76 2.32
101 102 0.242825 AACGACGAGATCCGAGCAAA 59.757 50.000 0.00 0.00 41.76 3.68
102 103 0.456142 CAACGACGAGATCCGAGCAA 60.456 55.000 0.00 0.00 41.76 3.91
103 104 1.136774 CAACGACGAGATCCGAGCA 59.863 57.895 0.00 0.00 41.76 4.26
104 105 0.456312 AACAACGACGAGATCCGAGC 60.456 55.000 0.00 2.24 41.76 5.03
105 106 1.536149 GAACAACGACGAGATCCGAG 58.464 55.000 0.00 6.49 41.76 4.63
106 107 0.179207 CGAACAACGACGAGATCCGA 60.179 55.000 0.00 0.00 45.77 4.55
107 108 0.453950 ACGAACAACGACGAGATCCG 60.454 55.000 0.00 2.02 45.77 4.18
108 109 1.135746 AGACGAACAACGACGAGATCC 60.136 52.381 0.00 0.00 45.77 3.36
109 110 2.244281 AGACGAACAACGACGAGATC 57.756 50.000 0.00 0.00 45.77 2.75
110 111 2.473540 CGTAGACGAACAACGACGAGAT 60.474 50.000 0.00 0.00 45.77 2.75
111 112 1.136529 CGTAGACGAACAACGACGAGA 60.137 52.381 0.00 0.00 45.77 4.04
112 113 1.236556 CGTAGACGAACAACGACGAG 58.763 55.000 0.00 0.00 45.77 4.18
113 114 0.581529 ACGTAGACGAACAACGACGA 59.418 50.000 9.41 0.00 45.77 4.20
114 115 1.376856 GAACGTAGACGAACAACGACG 59.623 52.381 9.41 0.00 45.77 5.12
115 116 1.376856 CGAACGTAGACGAACAACGAC 59.623 52.381 9.41 0.00 45.77 4.34
116 117 1.003972 ACGAACGTAGACGAACAACGA 60.004 47.619 9.41 0.00 45.77 3.85
118 119 2.098211 CACACGAACGTAGACGAACAAC 60.098 50.000 9.41 0.00 43.02 3.32
119 120 2.110990 CACACGAACGTAGACGAACAA 58.889 47.619 9.41 0.00 43.02 2.83
120 121 1.063912 ACACACGAACGTAGACGAACA 59.936 47.619 9.41 0.00 43.02 3.18
121 122 1.705559 GACACACGAACGTAGACGAAC 59.294 52.381 9.41 1.55 43.02 3.95
122 123 1.599071 AGACACACGAACGTAGACGAA 59.401 47.619 9.41 0.00 43.02 3.85
123 124 1.220529 AGACACACGAACGTAGACGA 58.779 50.000 9.41 0.00 43.02 4.20
124 125 1.967908 GAAGACACACGAACGTAGACG 59.032 52.381 0.00 0.00 46.33 4.18
125 126 1.967908 CGAAGACACACGAACGTAGAC 59.032 52.381 0.00 0.00 0.00 2.59
126 127 1.069703 CCGAAGACACACGAACGTAGA 60.070 52.381 0.00 0.00 0.00 2.59
127 128 1.324718 CCGAAGACACACGAACGTAG 58.675 55.000 0.00 0.00 0.00 3.51
128 129 0.040157 CCCGAAGACACACGAACGTA 60.040 55.000 0.00 0.00 0.00 3.57
129 130 1.299620 CCCGAAGACACACGAACGT 60.300 57.895 0.00 0.00 0.00 3.99
130 131 0.872881 AACCCGAAGACACACGAACG 60.873 55.000 0.00 0.00 0.00 3.95
131 132 0.580104 CAACCCGAAGACACACGAAC 59.420 55.000 0.00 0.00 0.00 3.95
132 133 0.460722 TCAACCCGAAGACACACGAA 59.539 50.000 0.00 0.00 0.00 3.85
133 134 0.460722 TTCAACCCGAAGACACACGA 59.539 50.000 0.00 0.00 0.00 4.35
134 135 1.459592 GATTCAACCCGAAGACACACG 59.540 52.381 0.00 0.00 36.95 4.49
135 136 1.804748 GGATTCAACCCGAAGACACAC 59.195 52.381 0.00 0.00 36.95 3.82
136 137 1.697432 AGGATTCAACCCGAAGACACA 59.303 47.619 0.00 0.00 36.95 3.72
137 138 2.474410 AGGATTCAACCCGAAGACAC 57.526 50.000 0.00 0.00 36.95 3.67
138 139 3.053831 GAAGGATTCAACCCGAAGACA 57.946 47.619 0.00 0.00 46.62 3.41
146 147 5.800882 TAACGTAGGTTGGAAGGATTCAACC 60.801 44.000 15.10 15.10 46.83 3.77
147 148 5.240121 TAACGTAGGTTGGAAGGATTCAAC 58.760 41.667 10.99 0.00 41.43 3.18
148 149 5.486735 TAACGTAGGTTGGAAGGATTCAA 57.513 39.130 10.99 0.00 41.43 2.69
149 150 5.687166 ATAACGTAGGTTGGAAGGATTCA 57.313 39.130 10.99 0.00 41.43 2.57
150 151 6.346896 AGAATAACGTAGGTTGGAAGGATTC 58.653 40.000 10.99 10.16 40.01 2.52
151 152 6.309389 AGAATAACGTAGGTTGGAAGGATT 57.691 37.500 10.99 1.75 36.90 3.01
152 153 5.952347 AGAATAACGTAGGTTGGAAGGAT 57.048 39.130 10.99 0.00 36.90 3.24
153 154 5.246656 TGAAGAATAACGTAGGTTGGAAGGA 59.753 40.000 10.99 0.00 36.90 3.36
154 155 5.484715 TGAAGAATAACGTAGGTTGGAAGG 58.515 41.667 10.99 0.00 36.90 3.46
155 156 7.414098 CCAATGAAGAATAACGTAGGTTGGAAG 60.414 40.741 10.99 0.00 36.90 3.46
156 157 6.373216 CCAATGAAGAATAACGTAGGTTGGAA 59.627 38.462 10.99 0.00 36.90 3.53
157 158 5.878116 CCAATGAAGAATAACGTAGGTTGGA 59.122 40.000 10.99 0.00 36.90 3.53
158 159 5.448632 GCCAATGAAGAATAACGTAGGTTGG 60.449 44.000 10.99 1.63 36.90 3.77
159 160 5.569413 GCCAATGAAGAATAACGTAGGTTG 58.431 41.667 10.99 0.00 36.90 3.77
160 161 4.331717 CGCCAATGAAGAATAACGTAGGTT 59.668 41.667 6.03 6.03 40.20 3.50
161 162 3.869246 CGCCAATGAAGAATAACGTAGGT 59.131 43.478 0.00 0.00 0.00 3.08
162 163 3.247648 CCGCCAATGAAGAATAACGTAGG 59.752 47.826 0.00 0.00 0.00 3.18
163 164 3.303132 GCCGCCAATGAAGAATAACGTAG 60.303 47.826 0.00 0.00 0.00 3.51
164 165 2.610374 GCCGCCAATGAAGAATAACGTA 59.390 45.455 0.00 0.00 0.00 3.57
165 166 1.400494 GCCGCCAATGAAGAATAACGT 59.600 47.619 0.00 0.00 0.00 3.99
166 167 1.594518 CGCCGCCAATGAAGAATAACG 60.595 52.381 0.00 0.00 0.00 3.18
167 168 1.268539 CCGCCGCCAATGAAGAATAAC 60.269 52.381 0.00 0.00 0.00 1.89
168 169 1.021202 CCGCCGCCAATGAAGAATAA 58.979 50.000 0.00 0.00 0.00 1.40
169 170 0.107410 ACCGCCGCCAATGAAGAATA 60.107 50.000 0.00 0.00 0.00 1.75
170 171 0.965363 AACCGCCGCCAATGAAGAAT 60.965 50.000 0.00 0.00 0.00 2.40
171 172 1.602323 AACCGCCGCCAATGAAGAA 60.602 52.632 0.00 0.00 0.00 2.52
172 173 2.033448 AACCGCCGCCAATGAAGA 59.967 55.556 0.00 0.00 0.00 2.87
173 174 2.179018 CAACCGCCGCCAATGAAG 59.821 61.111 0.00 0.00 0.00 3.02
174 175 4.049640 GCAACCGCCGCCAATGAA 62.050 61.111 0.00 0.00 0.00 2.57
175 176 2.884997 ATAGCAACCGCCGCCAATGA 62.885 55.000 0.00 0.00 39.83 2.57
176 177 2.003658 AATAGCAACCGCCGCCAATG 62.004 55.000 0.00 0.00 39.83 2.82
177 178 1.724582 GAATAGCAACCGCCGCCAAT 61.725 55.000 0.00 0.00 39.83 3.16
178 179 2.360600 AATAGCAACCGCCGCCAA 60.361 55.556 0.00 0.00 39.83 4.52
179 180 2.822255 GAATAGCAACCGCCGCCA 60.822 61.111 0.00 0.00 39.83 5.69
180 181 2.513897 AGAATAGCAACCGCCGCC 60.514 61.111 0.00 0.00 39.83 6.13
181 182 2.709475 CAGAATAGCAACCGCCGC 59.291 61.111 0.00 0.00 39.83 6.53
182 183 1.449601 ACCAGAATAGCAACCGCCG 60.450 57.895 0.00 0.00 39.83 6.46
183 184 1.993369 GCACCAGAATAGCAACCGCC 61.993 60.000 0.00 0.00 39.83 6.13
184 185 1.429423 GCACCAGAATAGCAACCGC 59.571 57.895 0.00 0.00 38.99 5.68
185 186 1.019278 ACGCACCAGAATAGCAACCG 61.019 55.000 0.00 0.00 0.00 4.44
186 187 1.135689 CAACGCACCAGAATAGCAACC 60.136 52.381 0.00 0.00 0.00 3.77
187 188 1.135689 CCAACGCACCAGAATAGCAAC 60.136 52.381 0.00 0.00 0.00 4.17
188 189 1.164411 CCAACGCACCAGAATAGCAA 58.836 50.000 0.00 0.00 0.00 3.91
189 190 0.036164 ACCAACGCACCAGAATAGCA 59.964 50.000 0.00 0.00 0.00 3.49
190 191 0.727398 GACCAACGCACCAGAATAGC 59.273 55.000 0.00 0.00 0.00 2.97
191 192 2.093306 TGACCAACGCACCAGAATAG 57.907 50.000 0.00 0.00 0.00 1.73
192 193 2.779755 ATGACCAACGCACCAGAATA 57.220 45.000 0.00 0.00 0.00 1.75
193 194 2.779755 TATGACCAACGCACCAGAAT 57.220 45.000 0.00 0.00 0.00 2.40
194 195 2.355197 CATATGACCAACGCACCAGAA 58.645 47.619 0.00 0.00 0.00 3.02
195 196 1.406751 CCATATGACCAACGCACCAGA 60.407 52.381 3.65 0.00 0.00 3.86
196 197 1.016627 CCATATGACCAACGCACCAG 58.983 55.000 3.65 0.00 0.00 4.00
197 198 0.393673 CCCATATGACCAACGCACCA 60.394 55.000 3.65 0.00 0.00 4.17
198 199 1.101049 CCCCATATGACCAACGCACC 61.101 60.000 3.65 0.00 0.00 5.01
199 200 1.724582 GCCCCATATGACCAACGCAC 61.725 60.000 3.65 0.00 0.00 5.34
200 201 1.453015 GCCCCATATGACCAACGCA 60.453 57.895 3.65 0.00 0.00 5.24
201 202 2.193536 GGCCCCATATGACCAACGC 61.194 63.158 3.65 0.00 0.00 4.84
202 203 0.106719 AAGGCCCCATATGACCAACG 60.107 55.000 3.65 0.00 0.00 4.10
203 204 2.863809 CTAAGGCCCCATATGACCAAC 58.136 52.381 3.65 0.00 0.00 3.77
204 205 1.144913 GCTAAGGCCCCATATGACCAA 59.855 52.381 3.65 0.00 0.00 3.67
205 206 0.771127 GCTAAGGCCCCATATGACCA 59.229 55.000 3.65 0.00 0.00 4.02
206 207 0.771127 TGCTAAGGCCCCATATGACC 59.229 55.000 3.65 2.76 37.74 4.02
207 208 1.878102 CGTGCTAAGGCCCCATATGAC 60.878 57.143 3.65 0.00 37.74 3.06
208 209 0.396435 CGTGCTAAGGCCCCATATGA 59.604 55.000 3.65 0.00 37.74 2.15
209 210 0.396435 TCGTGCTAAGGCCCCATATG 59.604 55.000 0.00 0.00 37.74 1.78
210 211 0.396811 GTCGTGCTAAGGCCCCATAT 59.603 55.000 0.00 0.00 37.74 1.78
211 212 0.978667 TGTCGTGCTAAGGCCCCATA 60.979 55.000 0.00 0.00 37.74 2.74
212 213 1.847798 TTGTCGTGCTAAGGCCCCAT 61.848 55.000 0.00 0.00 37.74 4.00
213 214 2.521451 TTGTCGTGCTAAGGCCCCA 61.521 57.895 0.00 0.00 37.74 4.96
214 215 2.038837 GTTGTCGTGCTAAGGCCCC 61.039 63.158 0.00 0.00 37.74 5.80
215 216 0.605589 AAGTTGTCGTGCTAAGGCCC 60.606 55.000 0.00 0.00 37.74 5.80
216 217 0.796927 GAAGTTGTCGTGCTAAGGCC 59.203 55.000 0.00 0.00 37.74 5.19
217 218 0.796927 GGAAGTTGTCGTGCTAAGGC 59.203 55.000 0.00 0.00 39.26 4.35
218 219 1.439679 GGGAAGTTGTCGTGCTAAGG 58.560 55.000 0.00 0.00 0.00 2.69
219 220 1.068474 CGGGAAGTTGTCGTGCTAAG 58.932 55.000 0.00 0.00 0.00 2.18
220 221 0.675083 TCGGGAAGTTGTCGTGCTAA 59.325 50.000 0.00 0.00 0.00 3.09
221 222 0.038892 GTCGGGAAGTTGTCGTGCTA 60.039 55.000 0.00 0.00 0.00 3.49
222 223 1.300697 GTCGGGAAGTTGTCGTGCT 60.301 57.895 0.00 0.00 0.00 4.40
223 224 1.300697 AGTCGGGAAGTTGTCGTGC 60.301 57.895 0.00 0.00 0.00 5.34
224 225 0.249322 ACAGTCGGGAAGTTGTCGTG 60.249 55.000 0.00 0.00 0.00 4.35
225 226 0.031721 GACAGTCGGGAAGTTGTCGT 59.968 55.000 0.00 0.00 31.72 4.34
226 227 0.314302 AGACAGTCGGGAAGTTGTCG 59.686 55.000 0.00 0.00 43.48 4.35
227 228 2.557490 AGTAGACAGTCGGGAAGTTGTC 59.443 50.000 0.00 0.00 40.08 3.18
228 229 2.595238 AGTAGACAGTCGGGAAGTTGT 58.405 47.619 0.00 0.00 0.00 3.32
229 230 3.504906 TGTAGTAGACAGTCGGGAAGTTG 59.495 47.826 0.00 0.00 32.86 3.16
230 231 3.759581 TGTAGTAGACAGTCGGGAAGTT 58.240 45.455 0.00 0.00 32.86 2.66
231 232 3.430042 TGTAGTAGACAGTCGGGAAGT 57.570 47.619 0.00 0.00 32.86 3.01
232 233 3.504906 TGTTGTAGTAGACAGTCGGGAAG 59.495 47.826 0.00 0.00 39.88 3.46
233 234 3.489355 TGTTGTAGTAGACAGTCGGGAA 58.511 45.455 0.00 0.00 39.88 3.97
234 235 3.144657 TGTTGTAGTAGACAGTCGGGA 57.855 47.619 0.00 0.00 39.88 5.14
235 236 3.255149 ACTTGTTGTAGTAGACAGTCGGG 59.745 47.826 0.00 0.00 39.88 5.14
236 237 4.500603 ACTTGTTGTAGTAGACAGTCGG 57.499 45.455 0.00 0.00 39.88 4.79
237 238 5.173312 CACAACTTGTTGTAGTAGACAGTCG 59.827 44.000 17.26 0.00 39.88 4.18
238 239 5.050972 GCACAACTTGTTGTAGTAGACAGTC 60.051 44.000 17.26 0.00 39.88 3.51
239 240 4.809426 GCACAACTTGTTGTAGTAGACAGT 59.191 41.667 17.26 0.00 39.88 3.55
240 241 4.211374 GGCACAACTTGTTGTAGTAGACAG 59.789 45.833 17.26 5.63 39.88 3.51
241 242 4.124238 GGCACAACTTGTTGTAGTAGACA 58.876 43.478 17.26 0.00 35.78 3.41
242 243 3.497262 GGGCACAACTTGTTGTAGTAGAC 59.503 47.826 17.26 8.51 33.17 2.59
243 244 3.735591 GGGCACAACTTGTTGTAGTAGA 58.264 45.455 17.26 0.00 33.17 2.59
244 245 2.478894 CGGGCACAACTTGTTGTAGTAG 59.521 50.000 17.26 7.80 33.17 2.57
245 246 2.485903 CGGGCACAACTTGTTGTAGTA 58.514 47.619 17.26 0.00 33.17 1.82
246 247 1.305201 CGGGCACAACTTGTTGTAGT 58.695 50.000 17.26 0.00 33.17 2.73
247 248 0.591170 CCGGGCACAACTTGTTGTAG 59.409 55.000 17.26 12.96 33.17 2.74
248 249 1.448922 GCCGGGCACAACTTGTTGTA 61.449 55.000 15.62 0.00 33.17 2.41
249 250 2.781158 GCCGGGCACAACTTGTTGT 61.781 57.895 15.62 12.73 35.14 3.32
250 251 2.027460 GCCGGGCACAACTTGTTG 59.973 61.111 15.62 11.44 0.00 3.33
251 252 2.123897 AGCCGGGCACAACTTGTT 60.124 55.556 23.09 0.00 0.00 2.83
252 253 2.594592 GAGCCGGGCACAACTTGT 60.595 61.111 23.09 0.00 0.00 3.16
253 254 3.365265 GGAGCCGGGCACAACTTG 61.365 66.667 23.09 0.00 0.00 3.16
268 269 0.032117 ATCACCTCTCCATCACCGGA 60.032 55.000 9.46 0.00 0.00 5.14
269 270 0.105593 CATCACCTCTCCATCACCGG 59.894 60.000 0.00 0.00 0.00 5.28
270 271 1.114627 TCATCACCTCTCCATCACCG 58.885 55.000 0.00 0.00 0.00 4.94
271 272 1.202463 CGTCATCACCTCTCCATCACC 60.202 57.143 0.00 0.00 0.00 4.02
272 273 1.202463 CCGTCATCACCTCTCCATCAC 60.202 57.143 0.00 0.00 0.00 3.06
273 274 1.114627 CCGTCATCACCTCTCCATCA 58.885 55.000 0.00 0.00 0.00 3.07
274 275 0.249657 GCCGTCATCACCTCTCCATC 60.250 60.000 0.00 0.00 0.00 3.51
275 276 1.826024 GCCGTCATCACCTCTCCAT 59.174 57.895 0.00 0.00 0.00 3.41
276 277 2.710902 CGCCGTCATCACCTCTCCA 61.711 63.158 0.00 0.00 0.00 3.86
277 278 2.105128 CGCCGTCATCACCTCTCC 59.895 66.667 0.00 0.00 0.00 3.71
278 279 2.105128 CCGCCGTCATCACCTCTC 59.895 66.667 0.00 0.00 0.00 3.20
279 280 4.148825 GCCGCCGTCATCACCTCT 62.149 66.667 0.00 0.00 0.00 3.69
299 300 1.375268 ACTGAAGCGAGCTGAAGGC 60.375 57.895 0.00 0.00 42.19 4.35
300 301 1.633852 GCACTGAAGCGAGCTGAAGG 61.634 60.000 0.00 0.00 0.00 3.46
301 302 0.669932 AGCACTGAAGCGAGCTGAAG 60.670 55.000 0.00 2.13 40.15 3.02
302 303 0.250038 AAGCACTGAAGCGAGCTGAA 60.250 50.000 0.00 0.00 40.15 3.02
303 304 0.947660 CAAGCACTGAAGCGAGCTGA 60.948 55.000 0.00 0.00 40.15 4.26
304 305 1.226686 ACAAGCACTGAAGCGAGCTG 61.227 55.000 0.00 0.00 40.15 4.24
305 306 0.318441 TACAAGCACTGAAGCGAGCT 59.682 50.000 0.00 0.00 40.15 4.09
306 307 1.148310 TTACAAGCACTGAAGCGAGC 58.852 50.000 0.00 0.00 40.15 5.03
307 308 2.028523 CGATTACAAGCACTGAAGCGAG 59.971 50.000 0.00 0.00 40.15 5.03
308 309 1.992667 CGATTACAAGCACTGAAGCGA 59.007 47.619 0.00 0.00 40.15 4.93
309 310 1.726791 ACGATTACAAGCACTGAAGCG 59.273 47.619 0.00 0.00 40.15 4.68
310 311 2.222596 CGACGATTACAAGCACTGAAGC 60.223 50.000 0.00 0.00 0.00 3.86
311 312 2.222596 GCGACGATTACAAGCACTGAAG 60.223 50.000 0.00 0.00 0.00 3.02
312 313 1.724623 GCGACGATTACAAGCACTGAA 59.275 47.619 0.00 0.00 0.00 3.02
313 314 1.067846 AGCGACGATTACAAGCACTGA 60.068 47.619 0.00 0.00 0.00 3.41
314 315 1.350193 AGCGACGATTACAAGCACTG 58.650 50.000 0.00 0.00 0.00 3.66
315 316 2.479730 CCTAGCGACGATTACAAGCACT 60.480 50.000 0.00 0.00 0.00 4.40
316 317 1.852895 CCTAGCGACGATTACAAGCAC 59.147 52.381 0.00 0.00 0.00 4.40
317 318 1.475280 ACCTAGCGACGATTACAAGCA 59.525 47.619 0.00 0.00 0.00 3.91
318 319 1.852895 CACCTAGCGACGATTACAAGC 59.147 52.381 0.00 0.00 0.00 4.01
319 320 2.159282 ACCACCTAGCGACGATTACAAG 60.159 50.000 0.00 0.00 0.00 3.16
320 321 1.820519 ACCACCTAGCGACGATTACAA 59.179 47.619 0.00 0.00 0.00 2.41
321 322 1.402968 GACCACCTAGCGACGATTACA 59.597 52.381 0.00 0.00 0.00 2.41
322 323 1.674962 AGACCACCTAGCGACGATTAC 59.325 52.381 0.00 0.00 0.00 1.89
323 324 2.048444 AGACCACCTAGCGACGATTA 57.952 50.000 0.00 0.00 0.00 1.75
324 325 1.674962 GTAGACCACCTAGCGACGATT 59.325 52.381 0.00 0.00 0.00 3.34
325 326 1.307097 GTAGACCACCTAGCGACGAT 58.693 55.000 0.00 0.00 0.00 3.73
326 327 1.086067 CGTAGACCACCTAGCGACGA 61.086 60.000 0.00 0.00 0.00 4.20
327 328 1.351012 CGTAGACCACCTAGCGACG 59.649 63.158 0.00 0.00 0.00 5.12
328 329 0.745845 TCCGTAGACCACCTAGCGAC 60.746 60.000 0.00 0.00 0.00 5.19
329 330 0.182061 ATCCGTAGACCACCTAGCGA 59.818 55.000 0.00 0.00 0.00 4.93
330 331 0.592148 GATCCGTAGACCACCTAGCG 59.408 60.000 0.00 0.00 0.00 4.26
331 332 1.609555 CAGATCCGTAGACCACCTAGC 59.390 57.143 0.00 0.00 0.00 3.42
332 333 2.158652 TCCAGATCCGTAGACCACCTAG 60.159 54.545 0.00 0.00 0.00 3.02
333 334 1.848388 TCCAGATCCGTAGACCACCTA 59.152 52.381 0.00 0.00 0.00 3.08
334 335 0.629596 TCCAGATCCGTAGACCACCT 59.370 55.000 0.00 0.00 0.00 4.00
335 336 1.341531 CATCCAGATCCGTAGACCACC 59.658 57.143 0.00 0.00 0.00 4.61
336 337 2.032620 ACATCCAGATCCGTAGACCAC 58.967 52.381 0.00 0.00 0.00 4.16
337 338 2.454336 ACATCCAGATCCGTAGACCA 57.546 50.000 0.00 0.00 0.00 4.02
338 339 5.470047 AATTACATCCAGATCCGTAGACC 57.530 43.478 0.00 0.00 0.00 3.85
339 340 7.787725 AAAAATTACATCCAGATCCGTAGAC 57.212 36.000 0.00 0.00 0.00 2.59
348 349 9.717942 CCACCAAAAATAAAAATTACATCCAGA 57.282 29.630 0.00 0.00 0.00 3.86
349 350 9.500785 ACCACCAAAAATAAAAATTACATCCAG 57.499 29.630 0.00 0.00 0.00 3.86
350 351 9.495572 GACCACCAAAAATAAAAATTACATCCA 57.504 29.630 0.00 0.00 0.00 3.41
351 352 8.652463 CGACCACCAAAAATAAAAATTACATCC 58.348 33.333 0.00 0.00 0.00 3.51
352 353 9.198837 ACGACCACCAAAAATAAAAATTACATC 57.801 29.630 0.00 0.00 0.00 3.06
353 354 9.549078 AACGACCACCAAAAATAAAAATTACAT 57.451 25.926 0.00 0.00 0.00 2.29
354 355 8.943909 AACGACCACCAAAAATAAAAATTACA 57.056 26.923 0.00 0.00 0.00 2.41
359 360 9.680315 CAGTATAACGACCACCAAAAATAAAAA 57.320 29.630 0.00 0.00 0.00 1.94
360 361 7.808856 GCAGTATAACGACCACCAAAAATAAAA 59.191 33.333 0.00 0.00 0.00 1.52
361 362 7.306953 GCAGTATAACGACCACCAAAAATAAA 58.693 34.615 0.00 0.00 0.00 1.40
362 363 6.127952 GGCAGTATAACGACCACCAAAAATAA 60.128 38.462 0.00 0.00 0.00 1.40
363 364 5.354792 GGCAGTATAACGACCACCAAAAATA 59.645 40.000 0.00 0.00 0.00 1.40
364 365 4.157105 GGCAGTATAACGACCACCAAAAAT 59.843 41.667 0.00 0.00 0.00 1.82
365 366 3.502979 GGCAGTATAACGACCACCAAAAA 59.497 43.478 0.00 0.00 0.00 1.94
366 367 3.075884 GGCAGTATAACGACCACCAAAA 58.924 45.455 0.00 0.00 0.00 2.44
367 368 2.038689 TGGCAGTATAACGACCACCAAA 59.961 45.455 0.00 0.00 0.00 3.28
368 369 1.624312 TGGCAGTATAACGACCACCAA 59.376 47.619 0.00 0.00 0.00 3.67
369 370 1.268066 TGGCAGTATAACGACCACCA 58.732 50.000 0.00 0.00 0.00 4.17
370 371 2.159014 TCATGGCAGTATAACGACCACC 60.159 50.000 0.00 0.00 32.25 4.61
371 372 3.173668 TCATGGCAGTATAACGACCAC 57.826 47.619 0.00 0.00 32.25 4.16
372 373 4.126437 CAATCATGGCAGTATAACGACCA 58.874 43.478 0.00 0.00 33.60 4.02
373 374 4.377021 TCAATCATGGCAGTATAACGACC 58.623 43.478 0.00 0.00 0.00 4.79
374 375 5.753438 TCTTCAATCATGGCAGTATAACGAC 59.247 40.000 0.00 0.00 0.00 4.34
375 376 5.912892 TCTTCAATCATGGCAGTATAACGA 58.087 37.500 0.00 0.00 0.00 3.85
376 377 6.424812 TCATCTTCAATCATGGCAGTATAACG 59.575 38.462 0.00 0.00 0.00 3.18
377 378 7.734924 TCATCTTCAATCATGGCAGTATAAC 57.265 36.000 0.00 0.00 0.00 1.89
378 379 8.929260 ATTCATCTTCAATCATGGCAGTATAA 57.071 30.769 0.00 0.00 0.00 0.98
379 380 9.662947 CTATTCATCTTCAATCATGGCAGTATA 57.337 33.333 0.00 0.00 0.00 1.47
380 381 8.380867 TCTATTCATCTTCAATCATGGCAGTAT 58.619 33.333 0.00 0.00 0.00 2.12
381 382 7.738847 TCTATTCATCTTCAATCATGGCAGTA 58.261 34.615 0.00 0.00 0.00 2.74
382 383 6.598503 TCTATTCATCTTCAATCATGGCAGT 58.401 36.000 0.00 0.00 0.00 4.40
383 384 7.689446 ATCTATTCATCTTCAATCATGGCAG 57.311 36.000 0.00 0.00 0.00 4.85
384 385 7.039993 CCAATCTATTCATCTTCAATCATGGCA 60.040 37.037 0.00 0.00 0.00 4.92
385 386 7.176165 TCCAATCTATTCATCTTCAATCATGGC 59.824 37.037 0.00 0.00 0.00 4.40
386 387 8.631480 TCCAATCTATTCATCTTCAATCATGG 57.369 34.615 0.00 0.00 0.00 3.66
388 389 9.863650 ACTTCCAATCTATTCATCTTCAATCAT 57.136 29.630 0.00 0.00 0.00 2.45
389 390 9.690913 AACTTCCAATCTATTCATCTTCAATCA 57.309 29.630 0.00 0.00 0.00 2.57
394 395 9.495754 CGAAAAACTTCCAATCTATTCATCTTC 57.504 33.333 0.00 0.00 0.00 2.87
395 396 9.014297 ACGAAAAACTTCCAATCTATTCATCTT 57.986 29.630 0.00 0.00 0.00 2.40
396 397 8.567285 ACGAAAAACTTCCAATCTATTCATCT 57.433 30.769 0.00 0.00 0.00 2.90
426 427 5.473039 GTGCATCTCACTTGCCTAATTTTT 58.527 37.500 0.00 0.00 42.38 1.94
427 428 4.379813 CGTGCATCTCACTTGCCTAATTTT 60.380 41.667 0.00 0.00 43.46 1.82
428 429 3.127548 CGTGCATCTCACTTGCCTAATTT 59.872 43.478 0.00 0.00 43.46 1.82
429 430 2.679837 CGTGCATCTCACTTGCCTAATT 59.320 45.455 0.00 0.00 43.46 1.40
430 431 2.283298 CGTGCATCTCACTTGCCTAAT 58.717 47.619 0.00 0.00 43.46 1.73
431 432 1.725641 CGTGCATCTCACTTGCCTAA 58.274 50.000 0.00 0.00 43.46 2.69
432 433 0.740868 GCGTGCATCTCACTTGCCTA 60.741 55.000 0.00 0.00 43.46 3.93
433 434 2.037136 GCGTGCATCTCACTTGCCT 61.037 57.895 0.00 0.00 43.46 4.75
434 435 2.482374 GCGTGCATCTCACTTGCC 59.518 61.111 0.00 0.00 43.46 4.52
435 436 1.651240 ATGGCGTGCATCTCACTTGC 61.651 55.000 0.00 0.00 43.46 4.01
436 437 0.376152 GATGGCGTGCATCTCACTTG 59.624 55.000 0.00 0.00 43.46 3.16
437 438 0.251354 AGATGGCGTGCATCTCACTT 59.749 50.000 0.00 0.00 43.46 3.16
438 439 0.251354 AAGATGGCGTGCATCTCACT 59.749 50.000 4.66 0.00 43.46 3.41
439 440 1.089920 AAAGATGGCGTGCATCTCAC 58.910 50.000 4.66 0.00 38.34 3.51
440 441 1.825090 AAAAGATGGCGTGCATCTCA 58.175 45.000 4.66 0.00 38.34 3.27
441 442 2.478539 GGAAAAAGATGGCGTGCATCTC 60.479 50.000 4.66 0.00 38.34 2.75
442 443 1.474077 GGAAAAAGATGGCGTGCATCT 59.526 47.619 0.00 0.00 40.77 2.90
443 444 1.795162 CGGAAAAAGATGGCGTGCATC 60.795 52.381 0.00 0.00 0.00 3.91
444 445 0.171007 CGGAAAAAGATGGCGTGCAT 59.829 50.000 0.00 0.00 0.00 3.96
445 446 0.886938 TCGGAAAAAGATGGCGTGCA 60.887 50.000 0.00 0.00 0.00 4.57
446 447 0.454452 GTCGGAAAAAGATGGCGTGC 60.454 55.000 0.00 0.00 0.00 5.34
447 448 0.871722 TGTCGGAAAAAGATGGCGTG 59.128 50.000 0.00 0.00 0.00 5.34
452 453 6.683974 ATATGTCCTTGTCGGAAAAAGATG 57.316 37.500 3.84 0.00 45.32 2.90
456 457 8.895737 GGTATAAATATGTCCTTGTCGGAAAAA 58.104 33.333 0.00 0.00 45.32 1.94
461 462 6.110411 AGGGTATAAATATGTCCTTGTCGG 57.890 41.667 0.00 0.00 0.00 4.79
462 463 8.446599 AAAAGGGTATAAATATGTCCTTGTCG 57.553 34.615 0.00 0.00 33.13 4.35
481 482 9.471084 AAAACTTTCGTATTATCACAAAAAGGG 57.529 29.630 0.00 0.00 30.64 3.95
511 518 9.314133 AGATGAAGCCTAGGTTTTATTTTTCTT 57.686 29.630 15.39 4.20 0.00 2.52
512 519 8.885693 AGATGAAGCCTAGGTTTTATTTTTCT 57.114 30.769 15.39 7.42 0.00 2.52
515 522 6.884836 ACGAGATGAAGCCTAGGTTTTATTTT 59.115 34.615 15.39 8.42 0.00 1.82
603 633 2.469826 CACGCATCGCCATCTTAACTA 58.530 47.619 0.00 0.00 0.00 2.24
624 655 2.582265 CGTGTCACGGACCGTTGTG 61.582 63.158 19.02 6.73 38.32 3.33
651 682 0.383590 CGTGCTCAGAGGACATCGAT 59.616 55.000 20.91 0.00 36.23 3.59
660 699 2.146519 CGTGCGTACGTGCTCAGAG 61.147 63.158 18.32 0.00 44.99 3.35
675 714 2.261671 CAAGGGGTCGACTCCGTG 59.738 66.667 31.54 31.54 37.05 4.94
694 733 1.212688 TCTGTTCGATTGGATGGGCAT 59.787 47.619 0.00 0.00 0.00 4.40
702 741 2.095853 CACGGGAATTCTGTTCGATTGG 59.904 50.000 5.23 0.00 31.34 3.16
706 745 0.970640 TCCACGGGAATTCTGTTCGA 59.029 50.000 5.23 0.65 31.34 3.71
787 828 0.958876 GTGGATTTGGGTCACGGTCC 60.959 60.000 0.00 0.00 0.00 4.46
789 830 0.536460 GTGTGGATTTGGGTCACGGT 60.536 55.000 0.00 0.00 34.43 4.83
790 831 1.573829 CGTGTGGATTTGGGTCACGG 61.574 60.000 7.89 0.00 44.92 4.94
841 892 4.308458 TGTTCGGGCCGTGGACTG 62.308 66.667 27.32 0.00 0.00 3.51
1030 1086 0.550914 AGGAGGTGTGCTGGTTTCAA 59.449 50.000 0.00 0.00 0.00 2.69
1040 1096 2.262915 GAGGCACGAGGAGGTGTG 59.737 66.667 0.00 0.00 40.08 3.82
1041 1097 2.997897 GGAGGCACGAGGAGGTGT 60.998 66.667 0.00 0.00 40.08 4.16
1042 1098 4.135153 CGGAGGCACGAGGAGGTG 62.135 72.222 0.00 0.00 40.89 4.00
1043 1099 4.680537 ACGGAGGCACGAGGAGGT 62.681 66.667 8.58 0.00 37.61 3.85
1059 1115 1.287503 GATCGATCCTCAGGGCGAC 59.712 63.158 14.76 3.62 34.23 5.19
1078 1134 1.730772 CGTCTGCTTCTCCGTCTCTTG 60.731 57.143 0.00 0.00 0.00 3.02
1084 1140 2.206515 CTGCTCGTCTGCTTCTCCGT 62.207 60.000 0.00 0.00 0.00 4.69
1085 1141 1.515952 CTGCTCGTCTGCTTCTCCG 60.516 63.158 0.00 0.00 0.00 4.63
1086 1142 1.809209 GCTGCTCGTCTGCTTCTCC 60.809 63.158 0.00 0.00 36.79 3.71
1087 1143 2.157701 CGCTGCTCGTCTGCTTCTC 61.158 63.158 0.00 0.00 37.48 2.87
1088 1144 1.943116 ATCGCTGCTCGTCTGCTTCT 61.943 55.000 0.00 0.00 39.67 2.85
1089 1145 1.518133 ATCGCTGCTCGTCTGCTTC 60.518 57.895 0.00 0.00 39.67 3.86
1090 1146 1.808799 CATCGCTGCTCGTCTGCTT 60.809 57.895 0.00 0.00 39.67 3.91
1091 1147 2.202716 CATCGCTGCTCGTCTGCT 60.203 61.111 0.00 0.00 39.67 4.24
1092 1148 2.202663 TCATCGCTGCTCGTCTGC 60.203 61.111 0.00 0.00 39.67 4.26
1207 1263 2.994995 TCACCGGGCACATCGTCT 60.995 61.111 6.32 0.00 0.00 4.18
1213 1269 4.980805 GCGAACTCACCGGGCACA 62.981 66.667 6.32 0.00 0.00 4.57
1219 1275 3.423154 GGCTTGGCGAACTCACCG 61.423 66.667 0.00 0.00 0.00 4.94
1305 1364 4.166011 GGCTCGCCATGAACGTGC 62.166 66.667 19.98 19.98 46.16 5.34
1384 1443 2.281970 CTCTTGCTGCAGGCCACA 60.282 61.111 17.12 0.89 40.92 4.17
1480 1542 4.440127 CAAATGCCGCACCCCTGC 62.440 66.667 0.00 0.00 40.38 4.85
1574 1636 4.162690 GGCAGGATCGTCGCCCTT 62.163 66.667 14.28 0.00 40.07 3.95
1601 1663 4.320456 CAGGTGCAGTCTGGGCGT 62.320 66.667 1.14 0.00 0.00 5.68
1609 1671 2.807107 TTGCCTCGACAGGTGCAGT 61.807 57.895 0.00 0.00 42.74 4.40
1622 1684 1.380302 GGATCACCACCAGTTGCCT 59.620 57.895 0.00 0.00 35.97 4.75
1627 1689 3.717294 GCCGGGATCACCACCAGT 61.717 66.667 2.18 0.00 40.22 4.00
1689 1752 1.669115 CACAAGGACAGCACCCTCG 60.669 63.158 0.00 0.00 32.57 4.63
1701 1764 2.166254 AGCACCAGAAACAAACACAAGG 59.834 45.455 0.00 0.00 0.00 3.61
1866 3701 1.339631 CCCTCCGTGGATGTAGCAAAA 60.340 52.381 0.00 0.00 38.35 2.44
1886 3723 1.089112 CCCGTAAATTCCCCGTGAAC 58.911 55.000 0.00 0.00 35.31 3.18
1924 3761 3.121092 GGAGAAAAACGCTTCGTGTACTC 60.121 47.826 0.00 1.28 39.99 2.59
1952 3794 3.054802 GGAAGGAAGCAGAATGGAGAGAA 60.055 47.826 0.00 0.00 35.86 2.87
1955 3797 2.269023 TGGAAGGAAGCAGAATGGAGA 58.731 47.619 0.00 0.00 35.86 3.71
1967 3811 2.842457 CATGATCTCGCATGGAAGGAA 58.158 47.619 0.00 0.00 41.45 3.36
1976 3820 3.230284 GGGACCCATGATCTCGCA 58.770 61.111 5.33 0.00 0.00 5.10
1999 3843 0.751643 TGATGCGATGGACGGAGAGA 60.752 55.000 0.00 0.00 46.59 3.10
2004 3848 1.162181 ATTGCTGATGCGATGGACGG 61.162 55.000 0.00 0.00 41.48 4.79
2026 3870 1.679032 CCGAAACTGTCCCAATCCCTC 60.679 57.143 0.00 0.00 0.00 4.30
2032 3876 1.070105 CGGTCCGAAACTGTCCCAA 59.930 57.895 4.91 0.00 0.00 4.12
2058 3902 4.454504 ACCTAAGTTAAAAGCATGACCGTG 59.545 41.667 0.00 0.00 0.00 4.94
2068 3912 9.503399 ACTGAATACCAGAACCTAAGTTAAAAG 57.497 33.333 0.00 0.00 45.78 2.27
2099 3943 1.024579 GGTACCATTGCCTCACCACG 61.025 60.000 7.15 0.00 0.00 4.94
2115 3959 4.474651 AGGACTTCCATGTTGATGATGGTA 59.525 41.667 0.00 0.00 41.19 3.25
2133 3977 1.075896 GGACGAGATGGGGAGGACT 60.076 63.158 0.00 0.00 0.00 3.85
2134 3978 0.688087 AAGGACGAGATGGGGAGGAC 60.688 60.000 0.00 0.00 0.00 3.85
2135 3979 0.687757 CAAGGACGAGATGGGGAGGA 60.688 60.000 0.00 0.00 0.00 3.71
2136 3980 0.978146 ACAAGGACGAGATGGGGAGG 60.978 60.000 0.00 0.00 0.00 4.30
2137 3981 0.905357 AACAAGGACGAGATGGGGAG 59.095 55.000 0.00 0.00 0.00 4.30
2174 5044 1.211949 ACCCCACGTCTCCCAATAATG 59.788 52.381 0.00 0.00 0.00 1.90
2202 6307 6.068010 ACACAACCTGAAGAACCAAATATGA 58.932 36.000 0.00 0.00 0.00 2.15
2249 6354 2.031012 CGCAAGACAGCTCCACCA 59.969 61.111 0.00 0.00 43.02 4.17
2262 6367 2.896854 GCATCATCCGCTCCGCAA 60.897 61.111 0.00 0.00 0.00 4.85
2287 6392 1.596934 GAGCCGGATGACCAAGACA 59.403 57.895 5.05 0.00 35.59 3.41
2297 6402 1.207791 AGTCAGAATTGGAGCCGGAT 58.792 50.000 5.05 0.00 0.00 4.18
2319 6424 1.337635 GCCGGAATTGCCAAACATTCA 60.338 47.619 5.05 0.00 35.94 2.57
2343 6448 0.874607 ACTCTCACACGTTCGCCAAC 60.875 55.000 0.00 0.00 0.00 3.77
2346 6451 0.874607 ACAACTCTCACACGTTCGCC 60.875 55.000 0.00 0.00 0.00 5.54
2351 6456 2.277084 GGAAACACAACTCTCACACGT 58.723 47.619 0.00 0.00 0.00 4.49
2352 6457 2.276201 TGGAAACACAACTCTCACACG 58.724 47.619 0.00 0.00 33.40 4.49
2390 6495 1.490693 GGGCATGTATGACGTCGCAG 61.491 60.000 11.62 5.63 36.40 5.18
2414 6519 1.332028 GCATAACAAATCGACGCCTCG 60.332 52.381 0.00 0.00 41.65 4.63
2441 6546 3.145551 AGAAGATACCGCCGCCGT 61.146 61.111 0.00 0.00 0.00 5.68
2442 6547 2.658593 CAGAAGATACCGCCGCCG 60.659 66.667 0.00 0.00 0.00 6.46
2444 6549 1.591863 GACCAGAAGATACCGCCGC 60.592 63.158 0.00 0.00 0.00 6.53
2447 6552 4.051922 CAATGTAGACCAGAAGATACCGC 58.948 47.826 0.00 0.00 0.00 5.68
2451 6556 5.886474 AGTCGTCAATGTAGACCAGAAGATA 59.114 40.000 7.09 0.00 35.65 1.98
2494 6599 2.229784 ACTTGTTAAGGCATGAGCTTGC 59.770 45.455 1.52 1.52 41.70 4.01
2495 6600 4.510038 AACTTGTTAAGGCATGAGCTTG 57.490 40.909 0.00 0.00 41.70 4.01
2521 6626 0.690192 TTGGGACTCAATCTCGGCAA 59.310 50.000 0.00 0.00 0.00 4.52
2522 6627 0.690192 TTTGGGACTCAATCTCGGCA 59.310 50.000 0.00 0.00 34.98 5.69
2525 6630 1.373570 GCCTTTGGGACTCAATCTCG 58.626 55.000 0.00 0.00 34.98 4.04
2535 6640 4.257654 TCGTTGCCGCCTTTGGGA 62.258 61.111 0.00 0.00 33.58 4.37
2553 6658 1.279840 GCCGCGCTATTGGTGAATC 59.720 57.895 5.56 0.00 0.00 2.52
2554 6659 0.819259 ATGCCGCGCTATTGGTGAAT 60.819 50.000 5.56 0.00 0.00 2.57
2557 6662 1.713937 TTGATGCCGCGCTATTGGTG 61.714 55.000 5.56 0.00 0.00 4.17
2558 6663 0.819259 ATTGATGCCGCGCTATTGGT 60.819 50.000 5.56 0.00 0.00 3.67
2576 6681 2.172293 GTCTTCTTCCCTCTGCATCCAT 59.828 50.000 0.00 0.00 0.00 3.41
2631 6737 8.204160 GGCCCTTATAAATGCTCTTACAAAAAT 58.796 33.333 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.