Multiple sequence alignment - TraesCS4A01G254600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G254600 chr4A 100.000 3409 0 0 1 3409 566831249 566827841 0.000000e+00 6296.0
1 TraesCS4A01G254600 chr1A 95.154 908 44 0 1 908 446216434 446217341 0.000000e+00 1434.0
2 TraesCS4A01G254600 chr1A 94.378 747 42 0 1 747 133188787 133189533 0.000000e+00 1147.0
3 TraesCS4A01G254600 chr1A 91.566 166 14 0 742 907 133200241 133200406 2.650000e-56 230.0
4 TraesCS4A01G254600 chr1D 93.929 906 55 0 1 906 472559092 472558187 0.000000e+00 1369.0
5 TraesCS4A01G254600 chr1D 83.825 915 139 7 1 907 23400224 23399311 0.000000e+00 861.0
6 TraesCS4A01G254600 chr1D 87.273 55 6 1 2911 2965 458476694 458476641 1.020000e-05 62.1
7 TraesCS4A01G254600 chr6A 93.826 907 55 1 1 907 590219267 590218362 0.000000e+00 1363.0
8 TraesCS4A01G254600 chr6A 94.545 220 12 0 1905 2124 121648921 121648702 1.170000e-89 340.0
9 TraesCS4A01G254600 chr6A 91.710 193 10 3 1700 1892 121649238 121649052 2.610000e-66 263.0
10 TraesCS4A01G254600 chr3A 93.722 908 56 1 1 908 499688412 499689318 0.000000e+00 1360.0
11 TraesCS4A01G254600 chr3A 94.545 220 12 0 1905 2124 403984453 403984234 1.170000e-89 340.0
12 TraesCS4A01G254600 chr3A 94.091 220 13 0 1905 2124 399610965 399610746 5.450000e-88 335.0
13 TraesCS4A01G254600 chr3A 91.192 193 11 3 1700 1892 399611282 399611096 1.210000e-64 257.0
14 TraesCS4A01G254600 chr3A 91.192 193 11 3 1700 1892 403984770 403984584 1.210000e-64 257.0
15 TraesCS4A01G254600 chr3A 80.000 85 16 1 2916 2999 164778493 164778577 1.020000e-05 62.1
16 TraesCS4A01G254600 chr6B 92.613 907 56 3 1 907 12916044 12915149 0.000000e+00 1293.0
17 TraesCS4A01G254600 chr4B 89.327 1040 58 18 906 1894 52035509 52036546 0.000000e+00 1256.0
18 TraesCS4A01G254600 chr4B 81.144 769 66 38 1911 2627 52036719 52037460 8.320000e-151 544.0
19 TraesCS4A01G254600 chr4B 77.778 117 22 4 2937 3050 657525670 657525555 6.100000e-08 69.4
20 TraesCS4A01G254600 chr4D 93.003 786 43 5 906 1680 35631913 35632697 0.000000e+00 1136.0
21 TraesCS4A01G254600 chr4D 83.739 904 70 33 1907 2758 35632876 35633754 0.000000e+00 784.0
22 TraesCS4A01G254600 chr4D 88.000 350 37 4 2763 3108 35634474 35634822 3.170000e-110 409.0
23 TraesCS4A01G254600 chr4D 94.400 125 6 1 1750 1874 35632692 35632815 1.250000e-44 191.0
24 TraesCS4A01G254600 chr4D 84.127 63 8 2 2904 2965 509285010 509285071 3.670000e-05 60.2
25 TraesCS4A01G254600 chr5D 94.961 635 32 0 274 908 448731212 448731846 0.000000e+00 996.0
26 TraesCS4A01G254600 chr5D 96.403 278 10 0 1 278 448729141 448729418 3.100000e-125 459.0
27 TraesCS4A01G254600 chr5D 95.045 222 7 2 1905 2124 80898786 80898567 2.520000e-91 346.0
28 TraesCS4A01G254600 chr5D 88.718 195 15 6 1700 1894 80899102 80898915 7.360000e-57 231.0
29 TraesCS4A01G254600 chr3B 86.105 914 108 10 1 907 743816905 743817806 0.000000e+00 966.0
30 TraesCS4A01G254600 chr3B 83.750 80 12 1 2886 2964 669950035 669950114 1.310000e-09 75.0
31 TraesCS4A01G254600 chr1B 80.131 916 170 6 1 908 418166529 418165618 0.000000e+00 673.0
32 TraesCS4A01G254600 chr5A 95.909 220 9 0 1905 2124 216668787 216668568 1.160000e-94 357.0
33 TraesCS4A01G254600 chr5A 94.545 220 12 0 1905 2124 308142356 308142575 1.170000e-89 340.0
34 TraesCS4A01G254600 chrUn 94.545 220 12 0 1905 2124 477530671 477530452 1.170000e-89 340.0
35 TraesCS4A01G254600 chrUn 93.182 220 9 1 1905 2124 387671408 387671621 5.490000e-83 318.0
36 TraesCS4A01G254600 chrUn 93.182 220 9 1 1905 2124 445370388 445370601 5.490000e-83 318.0
37 TraesCS4A01G254600 chrUn 75.497 151 31 6 2904 3050 402488822 402488970 6.100000e-08 69.4
38 TraesCS4A01G254600 chr2B 81.618 136 22 1 2868 3000 197213400 197213535 3.600000e-20 110.0
39 TraesCS4A01G254600 chr7D 79.661 118 17 6 2887 3000 405876467 405876353 1.010000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G254600 chr4A 566827841 566831249 3408 True 6296.0 6296 100.0000 1 3409 1 chr4A.!!$R1 3408
1 TraesCS4A01G254600 chr1A 446216434 446217341 907 False 1434.0 1434 95.1540 1 908 1 chr1A.!!$F3 907
2 TraesCS4A01G254600 chr1A 133188787 133189533 746 False 1147.0 1147 94.3780 1 747 1 chr1A.!!$F1 746
3 TraesCS4A01G254600 chr1D 472558187 472559092 905 True 1369.0 1369 93.9290 1 906 1 chr1D.!!$R3 905
4 TraesCS4A01G254600 chr1D 23399311 23400224 913 True 861.0 861 83.8250 1 907 1 chr1D.!!$R1 906
5 TraesCS4A01G254600 chr6A 590218362 590219267 905 True 1363.0 1363 93.8260 1 907 1 chr6A.!!$R1 906
6 TraesCS4A01G254600 chr6A 121648702 121649238 536 True 301.5 340 93.1275 1700 2124 2 chr6A.!!$R2 424
7 TraesCS4A01G254600 chr3A 499688412 499689318 906 False 1360.0 1360 93.7220 1 908 1 chr3A.!!$F2 907
8 TraesCS4A01G254600 chr3A 403984234 403984770 536 True 298.5 340 92.8685 1700 2124 2 chr3A.!!$R2 424
9 TraesCS4A01G254600 chr3A 399610746 399611282 536 True 296.0 335 92.6415 1700 2124 2 chr3A.!!$R1 424
10 TraesCS4A01G254600 chr6B 12915149 12916044 895 True 1293.0 1293 92.6130 1 907 1 chr6B.!!$R1 906
11 TraesCS4A01G254600 chr4B 52035509 52037460 1951 False 900.0 1256 85.2355 906 2627 2 chr4B.!!$F1 1721
12 TraesCS4A01G254600 chr4D 35631913 35634822 2909 False 630.0 1136 89.7855 906 3108 4 chr4D.!!$F2 2202
13 TraesCS4A01G254600 chr5D 448729141 448731846 2705 False 727.5 996 95.6820 1 908 2 chr5D.!!$F1 907
14 TraesCS4A01G254600 chr5D 80898567 80899102 535 True 288.5 346 91.8815 1700 2124 2 chr5D.!!$R1 424
15 TraesCS4A01G254600 chr3B 743816905 743817806 901 False 966.0 966 86.1050 1 907 1 chr3B.!!$F2 906
16 TraesCS4A01G254600 chr1B 418165618 418166529 911 True 673.0 673 80.1310 1 908 1 chr1B.!!$R1 907

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 2162 0.336737 AGGGATGAACTCTCCGGTCT 59.663 55.0 0.00 0.0 33.29 3.85 F
395 2195 0.454196 CGGGCCCCAAAATTTACTCG 59.546 55.0 18.66 0.0 0.00 4.18 F
2272 4382 0.725784 GATTGGTCGCGTGTTTGCTG 60.726 55.0 5.77 0.0 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2262 4371 0.172352 AACCAACACCAGCAAACACG 59.828 50.0 0.00 0.0 0.0 4.49 R
2279 4389 0.251341 ACATCCCACCCTGCAGAAAC 60.251 55.0 17.39 0.0 0.0 2.78 R
3146 5979 0.036294 GCGTTCTACAGCCCCTCTTT 60.036 55.0 0.00 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 66 3.868754 GCTTCTCCGTGGTTCATTAGGTT 60.869 47.826 0.00 0.00 0.00 3.50
226 228 4.464244 TGATAGGAATAAGGCTCATCCTCG 59.536 45.833 16.25 0.00 46.94 4.63
264 266 6.974932 CTGCTAAAGCTTTGTCTTCTGATA 57.025 37.500 22.02 0.00 42.66 2.15
334 2134 6.174720 AGTACAACTTCCTCTTGATCAACA 57.825 37.500 3.38 0.00 0.00 3.33
362 2162 0.336737 AGGGATGAACTCTCCGGTCT 59.663 55.000 0.00 0.00 33.29 3.85
395 2195 0.454196 CGGGCCCCAAAATTTACTCG 59.546 55.000 18.66 0.00 0.00 4.18
422 2222 4.572389 GCAGCTTTCAGATCTCGGAAATTA 59.428 41.667 8.28 0.00 38.84 1.40
433 2233 5.486735 TCTCGGAAATTACCTGGTTTACA 57.513 39.130 3.84 0.00 0.00 2.41
441 2241 9.027202 GGAAATTACCTGGTTTACAATAAGGAA 57.973 33.333 3.84 0.00 0.00 3.36
498 2310 3.755378 GCCTCAAGATCAAGTGAATGTGT 59.245 43.478 0.00 0.00 0.00 3.72
503 2315 8.200120 CCTCAAGATCAAGTGAATGTGTAGATA 58.800 37.037 0.00 0.00 0.00 1.98
573 2385 2.551459 GCTCTCTCTTTTGCTGCTCAAA 59.449 45.455 0.00 0.00 42.50 2.69
751 2574 7.867403 GCAACCTCAAGTCTTTCATATTTTCAA 59.133 33.333 0.00 0.00 0.00 2.69
836 2659 3.261580 AGTTTGTTGTTTTGCTTCAGCC 58.738 40.909 0.00 0.00 41.18 4.85
883 2706 7.042051 TGTTGTATCTCTTCTTTCCAACTTTCG 60.042 37.037 0.00 0.00 33.65 3.46
887 2710 3.473625 TCTTCTTTCCAACTTTCGGGAC 58.526 45.455 0.00 0.00 31.59 4.46
925 2748 2.044650 ACTAGCGGCCACTCGGTA 60.045 61.111 2.24 0.00 41.30 4.02
978 2814 1.693083 GAGCCATCGTGTTGGTACGC 61.693 60.000 0.00 0.00 43.40 4.42
984 2820 3.719144 GTGTTGGTACGCGTGCCC 61.719 66.667 37.87 28.41 34.17 5.36
1346 3198 6.038603 ACATGGTGAATTGGTAATCGATCAAG 59.961 38.462 0.00 0.00 0.00 3.02
1351 3203 7.182761 GTGAATTGGTAATCGATCAAGTCAAG 58.817 38.462 22.16 0.00 43.66 3.02
1359 3211 7.972277 GGTAATCGATCAAGTCAAGTAGTGTTA 59.028 37.037 0.00 0.00 0.00 2.41
1434 3286 1.205655 CTGCTGGTGAGGAAATCGAGA 59.794 52.381 0.00 0.00 0.00 4.04
1443 3295 1.001597 AGGAAATCGAGACGTATCGGC 60.002 52.381 29.80 17.15 42.93 5.54
1455 3307 1.887242 TATCGGCGGTGCAATGCTC 60.887 57.895 7.21 2.08 0.00 4.26
1533 3385 0.762082 CTGGGAGCTGGCCTCTGATA 60.762 60.000 3.32 0.00 40.57 2.15
1553 3405 5.471116 TGATATGAAGAAATCCATGCCGAAG 59.529 40.000 0.00 0.00 0.00 3.79
1562 3414 1.084370 CCATGCCGAAGTTCGAGTCC 61.084 60.000 26.37 11.62 43.74 3.85
1568 3420 3.984200 GAAGTTCGAGTCCGCGGGG 62.984 68.421 27.83 13.31 35.37 5.73
1640 3492 2.939261 CGACGGGGTAAGGCTGTGT 61.939 63.158 0.00 0.00 0.00 3.72
1655 3507 2.538939 GCTGTGTTGAGTTCGTGTTTCC 60.539 50.000 0.00 0.00 0.00 3.13
1686 3544 3.863681 GCACCGTGCAATCTTCAAA 57.136 47.368 18.79 0.00 44.26 2.69
1687 3545 2.132740 GCACCGTGCAATCTTCAAAA 57.867 45.000 18.79 0.00 44.26 2.44
1689 3547 2.409378 GCACCGTGCAATCTTCAAAATG 59.591 45.455 18.79 0.00 44.26 2.32
1691 3549 2.297033 ACCGTGCAATCTTCAAAATGCT 59.703 40.909 0.00 0.00 39.49 3.79
1693 3551 2.664568 CGTGCAATCTTCAAAATGCTGG 59.335 45.455 0.00 0.00 39.49 4.85
1695 3553 4.309099 GTGCAATCTTCAAAATGCTGGAA 58.691 39.130 0.00 0.00 39.49 3.53
1696 3554 4.933400 GTGCAATCTTCAAAATGCTGGAAT 59.067 37.500 0.00 0.00 39.49 3.01
1697 3555 6.101332 GTGCAATCTTCAAAATGCTGGAATA 58.899 36.000 0.00 0.00 39.49 1.75
1698 3556 6.591062 GTGCAATCTTCAAAATGCTGGAATAA 59.409 34.615 0.00 0.00 39.49 1.40
1704 3588 5.643379 TCAAAATGCTGGAATAAGTGGTC 57.357 39.130 0.00 0.00 0.00 4.02
1746 3630 3.118149 TGATCAGACCATCCCAATGTCAG 60.118 47.826 0.00 0.00 0.00 3.51
1753 3637 2.353011 CCATCCCAATGTCAGTTTGCAC 60.353 50.000 0.00 0.00 0.00 4.57
1793 3677 0.746923 GCATGCATGGAGCTGACTGA 60.747 55.000 27.34 0.00 45.94 3.41
1874 3758 3.863681 GCGCAAGGTGACAATTCAA 57.136 47.368 0.30 0.00 32.48 2.69
1894 3797 7.695480 TTCAATCCATTAATCCGTTCTTCAA 57.305 32.000 0.00 0.00 0.00 2.69
1895 3798 7.083875 TCAATCCATTAATCCGTTCTTCAAC 57.916 36.000 0.00 0.00 0.00 3.18
1897 3800 7.339212 TCAATCCATTAATCCGTTCTTCAACAT 59.661 33.333 0.00 0.00 32.14 2.71
1899 3802 6.176896 TCCATTAATCCGTTCTTCAACATCA 58.823 36.000 0.00 0.00 32.14 3.07
1901 3804 7.175816 TCCATTAATCCGTTCTTCAACATCAAA 59.824 33.333 0.00 0.00 32.14 2.69
1909 3968 6.348786 CCGTTCTTCAACATCAAATGACTGAT 60.349 38.462 0.00 0.00 36.45 2.90
1984 4043 1.679032 GGATTAGGCCGCACACTCTTT 60.679 52.381 0.00 0.00 0.00 2.52
2079 4157 5.450818 AGCCACTAAAATGTTGATCCCTA 57.549 39.130 0.00 0.00 0.00 3.53
2092 4170 2.700371 TGATCCCTACGCATGATGAAGT 59.300 45.455 0.00 0.00 0.00 3.01
2144 4222 1.073284 GGAGGCCACCAAGAACTACAA 59.927 52.381 15.24 0.00 0.00 2.41
2148 4226 1.807142 GCCACCAAGAACTACAAGCTC 59.193 52.381 0.00 0.00 0.00 4.09
2191 4269 4.806571 GCATCATGCAGCAGGTTG 57.193 55.556 12.79 12.79 44.26 3.77
2200 4278 1.881973 TGCAGCAGGTTGAACTGAATC 59.118 47.619 0.00 0.00 40.97 2.52
2205 4283 1.726791 CAGGTTGAACTGAATCCGTCG 59.273 52.381 0.00 0.00 40.97 5.12
2224 4302 3.004944 GTCGGTCCTCTGTATCTCCATTC 59.995 52.174 0.00 0.00 0.00 2.67
2228 4306 4.583489 GGTCCTCTGTATCTCCATTCGTTA 59.417 45.833 0.00 0.00 0.00 3.18
2242 4351 6.472887 TCCATTCGTTATCCTGAAGAAGTTT 58.527 36.000 0.00 0.00 0.00 2.66
2247 4356 6.106673 TCGTTATCCTGAAGAAGTTTGATCC 58.893 40.000 0.00 0.00 0.00 3.36
2260 4369 8.286191 AGAAGTTTGATCCTAATTGATTGGTC 57.714 34.615 0.00 0.00 0.00 4.02
2262 4371 5.066505 AGTTTGATCCTAATTGATTGGTCGC 59.933 40.000 0.00 0.00 0.00 5.19
2272 4382 0.725784 GATTGGTCGCGTGTTTGCTG 60.726 55.000 5.77 0.00 0.00 4.41
2279 4389 1.588667 GCGTGTTTGCTGGTGTTGG 60.589 57.895 0.00 0.00 0.00 3.77
2306 4416 2.038659 CAGGGTGGGATGTTTGTGTTT 58.961 47.619 0.00 0.00 0.00 2.83
2309 4419 2.560981 GGGTGGGATGTTTGTGTTTAGG 59.439 50.000 0.00 0.00 0.00 2.69
2312 4422 2.176045 GGGATGTTTGTGTTTAGGGGG 58.824 52.381 0.00 0.00 0.00 5.40
2373 4483 0.327924 TCACGCACCCTTGGATGATT 59.672 50.000 0.00 0.00 0.00 2.57
2375 4485 1.545582 CACGCACCCTTGGATGATTTT 59.454 47.619 0.00 0.00 0.00 1.82
2401 4511 3.423154 CTGTCGCCAAGTTCCGGC 61.423 66.667 0.00 0.00 46.62 6.13
2423 4533 2.851534 GCTTGACGTTTTATCAGGCAC 58.148 47.619 4.43 0.00 45.71 5.01
2432 4542 8.145122 TGACGTTTTATCAGGCACATATGTATA 58.855 33.333 8.32 0.00 0.00 1.47
2433 4543 9.151471 GACGTTTTATCAGGCACATATGTATAT 57.849 33.333 8.32 1.05 0.00 0.86
2434 4544 9.502091 ACGTTTTATCAGGCACATATGTATATT 57.498 29.630 8.32 0.00 0.00 1.28
2437 4547 8.860780 TTTATCAGGCACATATGTATATTGCA 57.139 30.769 8.32 0.00 32.98 4.08
2438 4548 6.748333 ATCAGGCACATATGTATATTGCAC 57.252 37.500 8.32 2.45 32.98 4.57
2478 4588 0.804989 CCGGACAGACAGAAAATGGC 59.195 55.000 0.00 0.00 37.09 4.40
2488 4598 2.887152 ACAGAAAATGGCCTCACAAGTC 59.113 45.455 3.32 0.00 0.00 3.01
2489 4599 2.886523 CAGAAAATGGCCTCACAAGTCA 59.113 45.455 3.32 0.00 0.00 3.41
2490 4600 2.887152 AGAAAATGGCCTCACAAGTCAC 59.113 45.455 3.32 0.00 0.00 3.67
2491 4601 2.363306 AAATGGCCTCACAAGTCACA 57.637 45.000 3.32 0.00 0.00 3.58
2492 4602 2.363306 AATGGCCTCACAAGTCACAA 57.637 45.000 3.32 0.00 0.00 3.33
2493 4603 1.901591 ATGGCCTCACAAGTCACAAG 58.098 50.000 3.32 0.00 0.00 3.16
2494 4604 0.546122 TGGCCTCACAAGTCACAAGT 59.454 50.000 3.32 0.00 0.00 3.16
2498 4608 2.682856 GCCTCACAAGTCACAAGTTTCA 59.317 45.455 0.00 0.00 0.00 2.69
2514 4624 7.706179 CACAAGTTTCACCTGTTTGTTTGATAT 59.294 33.333 0.00 0.00 30.15 1.63
2515 4625 8.908903 ACAAGTTTCACCTGTTTGTTTGATATA 58.091 29.630 0.00 0.00 0.00 0.86
2516 4626 9.743057 CAAGTTTCACCTGTTTGTTTGATATAA 57.257 29.630 0.00 0.00 0.00 0.98
2517 4627 9.965824 AAGTTTCACCTGTTTGTTTGATATAAG 57.034 29.630 0.00 0.00 0.00 1.73
2518 4628 8.082242 AGTTTCACCTGTTTGTTTGATATAAGC 58.918 33.333 0.00 0.00 0.00 3.09
2519 4629 6.509418 TCACCTGTTTGTTTGATATAAGCC 57.491 37.500 0.00 0.00 0.00 4.35
2520 4630 6.007076 TCACCTGTTTGTTTGATATAAGCCA 58.993 36.000 0.00 0.00 0.00 4.75
2521 4631 6.072175 TCACCTGTTTGTTTGATATAAGCCAC 60.072 38.462 0.00 0.00 0.00 5.01
2522 4632 6.010219 ACCTGTTTGTTTGATATAAGCCACT 58.990 36.000 0.00 0.00 0.00 4.00
2524 4634 7.015195 ACCTGTTTGTTTGATATAAGCCACTTT 59.985 33.333 0.00 0.00 0.00 2.66
2525 4635 7.872483 CCTGTTTGTTTGATATAAGCCACTTTT 59.128 33.333 0.00 0.00 0.00 2.27
2526 4636 9.260002 CTGTTTGTTTGATATAAGCCACTTTTT 57.740 29.630 0.00 0.00 0.00 1.94
2554 4666 5.121925 CAGATATCAAATTCTGCTCCGGATG 59.878 44.000 3.57 0.00 33.56 3.51
2555 4667 3.565764 ATCAAATTCTGCTCCGGATGA 57.434 42.857 3.57 3.09 0.00 2.92
2637 4750 4.832266 TGGTAAATGTTCTTGGCATCTGTT 59.168 37.500 0.00 0.00 0.00 3.16
2652 4765 1.403679 TCTGTTGCCAAGTTTCGGTTG 59.596 47.619 0.00 0.00 0.00 3.77
2653 4766 1.134175 CTGTTGCCAAGTTTCGGTTGT 59.866 47.619 0.00 0.00 0.00 3.32
2657 4770 1.134965 TGCCAAGTTTCGGTTGTTTGG 60.135 47.619 0.00 0.00 40.91 3.28
2658 4771 1.134936 GCCAAGTTTCGGTTGTTTGGT 60.135 47.619 3.79 0.00 40.27 3.67
2659 4772 2.535331 CCAAGTTTCGGTTGTTTGGTG 58.465 47.619 0.00 0.00 34.88 4.17
2663 4776 4.260139 AGTTTCGGTTGTTTGGTGTTTT 57.740 36.364 0.00 0.00 0.00 2.43
2664 4777 4.633175 AGTTTCGGTTGTTTGGTGTTTTT 58.367 34.783 0.00 0.00 0.00 1.94
2666 4779 5.634439 AGTTTCGGTTGTTTGGTGTTTTTAC 59.366 36.000 0.00 0.00 0.00 2.01
2669 4782 5.400703 TCGGTTGTTTGGTGTTTTTACTTC 58.599 37.500 0.00 0.00 0.00 3.01
2679 4792 5.189934 TGGTGTTTTTACTTCCCCATGTTTT 59.810 36.000 0.00 0.00 0.00 2.43
2733 4848 3.181476 GGTGCTGCCCATCGAAAATAAAT 60.181 43.478 0.00 0.00 0.00 1.40
2743 4858 7.242783 CCCATCGAAAATAAATTTTGCAAAGG 58.757 34.615 12.41 4.80 39.86 3.11
2802 5632 6.203915 GTGTAGTCAATGTACAATTGTCACCA 59.796 38.462 15.85 10.88 32.23 4.17
2819 5649 4.155826 GTCACCAGTGTGCTAATTTATGCA 59.844 41.667 0.00 0.00 42.46 3.96
2852 5682 8.768955 GTGTCCATTTGTTATTATTTGTTTGCA 58.231 29.630 0.00 0.00 0.00 4.08
2951 5783 0.034896 TGAAGGGTGCCGAAGTCTTC 59.965 55.000 2.18 2.18 0.00 2.87
2965 5797 2.831565 AGTCTTCTTCCTCCTGCATCT 58.168 47.619 0.00 0.00 0.00 2.90
2966 5798 2.500910 AGTCTTCTTCCTCCTGCATCTG 59.499 50.000 0.00 0.00 0.00 2.90
2968 5800 1.209990 CTTCTTCCTCCTGCATCTGCT 59.790 52.381 3.53 0.00 42.66 4.24
2978 5810 3.209812 CATCTGCTGGCAGCGCAT 61.210 61.111 32.12 23.30 46.26 4.73
2979 5811 2.900838 ATCTGCTGGCAGCGCATC 60.901 61.111 32.12 8.54 46.26 3.91
2980 5812 3.692370 ATCTGCTGGCAGCGCATCA 62.692 57.895 32.12 15.17 46.26 3.07
2982 5814 3.469754 CTGCTGGCAGCGCATCATG 62.470 63.158 32.12 13.20 46.26 3.07
2989 5821 1.138047 GCAGCGCATCATGAGCAAAC 61.138 55.000 16.33 0.37 45.82 2.93
3001 5833 4.633980 GCAAACCTCGTTGCCAAG 57.366 55.556 0.00 0.00 46.69 3.61
3005 5837 2.489971 CAAACCTCGTTGCCAAGTCTA 58.510 47.619 0.00 0.00 0.00 2.59
3013 5845 3.300013 GCCAAGTCTAGGCGTCCT 58.700 61.111 3.87 3.87 43.15 3.85
3018 5850 1.096416 AAGTCTAGGCGTCCTTCTCG 58.904 55.000 3.71 0.00 34.61 4.04
3024 5856 2.431942 GCGTCCTTCTCGGCGAAA 60.432 61.111 12.13 7.64 35.30 3.46
3029 5861 1.804748 GTCCTTCTCGGCGAAACAAAT 59.195 47.619 12.13 0.00 0.00 2.32
3050 5882 9.529325 ACAAATTTGTTTAAACCTAGAAGCTTC 57.471 29.630 19.11 19.11 38.47 3.86
3052 5884 9.750125 AAATTTGTTTAAACCTAGAAGCTTCTG 57.250 29.630 34.26 22.63 38.19 3.02
3056 5889 8.691661 TGTTTAAACCTAGAAGCTTCTGAATT 57.308 30.769 34.26 24.31 38.19 2.17
3062 5895 4.813697 CCTAGAAGCTTCTGAATTAGTGGC 59.186 45.833 34.26 2.02 38.19 5.01
3065 5898 1.279271 AGCTTCTGAATTAGTGGCCGT 59.721 47.619 0.00 0.00 0.00 5.68
3074 5907 0.390124 TTAGTGGCCGTGAAGTCGTT 59.610 50.000 0.00 0.00 0.00 3.85
3092 5925 5.938710 AGTCGTTGATGTAGACTAGAAGACA 59.061 40.000 0.00 0.00 42.71 3.41
3093 5926 6.600032 AGTCGTTGATGTAGACTAGAAGACAT 59.400 38.462 0.00 2.24 42.71 3.06
3094 5927 6.908284 GTCGTTGATGTAGACTAGAAGACATC 59.092 42.308 19.66 19.66 45.48 3.06
3111 5944 2.026445 CGTCAACCACGGTCGACA 59.974 61.111 18.91 0.00 45.46 4.35
3112 5945 1.372499 CGTCAACCACGGTCGACAT 60.372 57.895 18.91 1.15 45.46 3.06
3113 5946 0.109643 CGTCAACCACGGTCGACATA 60.110 55.000 18.91 0.00 45.46 2.29
3114 5947 1.625616 GTCAACCACGGTCGACATAG 58.374 55.000 18.91 10.48 32.74 2.23
3115 5948 0.108992 TCAACCACGGTCGACATAGC 60.109 55.000 18.91 0.00 0.00 2.97
3116 5949 0.389296 CAACCACGGTCGACATAGCA 60.389 55.000 18.91 0.00 0.00 3.49
3117 5950 0.319083 AACCACGGTCGACATAGCAA 59.681 50.000 18.91 0.00 0.00 3.91
3118 5951 0.319083 ACCACGGTCGACATAGCAAA 59.681 50.000 18.91 0.00 0.00 3.68
3119 5952 1.066430 ACCACGGTCGACATAGCAAAT 60.066 47.619 18.91 0.00 0.00 2.32
3120 5953 1.593006 CCACGGTCGACATAGCAAATC 59.407 52.381 18.91 0.00 0.00 2.17
3121 5954 2.267426 CACGGTCGACATAGCAAATCA 58.733 47.619 18.91 0.00 0.00 2.57
3122 5955 2.866156 CACGGTCGACATAGCAAATCAT 59.134 45.455 18.91 0.00 0.00 2.45
3123 5956 3.060272 CACGGTCGACATAGCAAATCATC 60.060 47.826 18.91 0.00 0.00 2.92
3124 5957 2.153817 CGGTCGACATAGCAAATCATCG 59.846 50.000 18.91 2.69 0.00 3.84
3125 5958 2.096713 GGTCGACATAGCAAATCATCGC 60.097 50.000 18.91 0.00 0.00 4.58
3126 5959 2.797156 GTCGACATAGCAAATCATCGCT 59.203 45.455 11.55 0.00 42.34 4.93
3127 5960 3.052745 TCGACATAGCAAATCATCGCTC 58.947 45.455 0.00 0.00 39.70 5.03
3128 5961 3.055591 CGACATAGCAAATCATCGCTCT 58.944 45.455 0.00 0.00 39.70 4.09
3129 5962 3.121092 CGACATAGCAAATCATCGCTCTG 60.121 47.826 0.00 0.00 39.70 3.35
3130 5963 3.136763 ACATAGCAAATCATCGCTCTGG 58.863 45.455 0.00 0.00 39.70 3.86
3131 5964 3.181462 ACATAGCAAATCATCGCTCTGGA 60.181 43.478 0.00 0.00 39.70 3.86
3132 5965 1.950828 AGCAAATCATCGCTCTGGAG 58.049 50.000 0.00 0.00 31.16 3.86
3133 5966 1.483827 AGCAAATCATCGCTCTGGAGA 59.516 47.619 1.35 0.00 31.16 3.71
3134 5967 2.093288 AGCAAATCATCGCTCTGGAGAA 60.093 45.455 1.35 0.00 31.16 2.87
3135 5968 2.679837 GCAAATCATCGCTCTGGAGAAA 59.320 45.455 1.35 0.00 0.00 2.52
3136 5969 3.242673 GCAAATCATCGCTCTGGAGAAAG 60.243 47.826 1.35 0.00 0.00 2.62
3137 5970 4.186926 CAAATCATCGCTCTGGAGAAAGA 58.813 43.478 1.35 0.00 0.00 2.52
3138 5971 4.478206 AATCATCGCTCTGGAGAAAGAA 57.522 40.909 1.35 0.00 0.00 2.52
3139 5972 3.961480 TCATCGCTCTGGAGAAAGAAA 57.039 42.857 1.35 0.00 0.00 2.52
3140 5973 4.271696 TCATCGCTCTGGAGAAAGAAAA 57.728 40.909 1.35 0.00 0.00 2.29
3141 5974 4.641396 TCATCGCTCTGGAGAAAGAAAAA 58.359 39.130 1.35 0.00 0.00 1.94
3142 5975 4.452455 TCATCGCTCTGGAGAAAGAAAAAC 59.548 41.667 1.35 0.00 0.00 2.43
3143 5976 3.804036 TCGCTCTGGAGAAAGAAAAACA 58.196 40.909 1.35 0.00 0.00 2.83
3144 5977 4.196193 TCGCTCTGGAGAAAGAAAAACAA 58.804 39.130 1.35 0.00 0.00 2.83
3145 5978 4.035208 TCGCTCTGGAGAAAGAAAAACAAC 59.965 41.667 1.35 0.00 0.00 3.32
3146 5979 4.201910 CGCTCTGGAGAAAGAAAAACAACA 60.202 41.667 1.35 0.00 0.00 3.33
3147 5980 5.650543 GCTCTGGAGAAAGAAAAACAACAA 58.349 37.500 1.35 0.00 0.00 2.83
3148 5981 6.099341 GCTCTGGAGAAAGAAAAACAACAAA 58.901 36.000 1.35 0.00 0.00 2.83
3149 5982 6.254373 GCTCTGGAGAAAGAAAAACAACAAAG 59.746 38.462 1.35 0.00 0.00 2.77
3150 5983 7.461182 TCTGGAGAAAGAAAAACAACAAAGA 57.539 32.000 0.00 0.00 0.00 2.52
3151 5984 7.538575 TCTGGAGAAAGAAAAACAACAAAGAG 58.461 34.615 0.00 0.00 0.00 2.85
3152 5985 6.630071 TGGAGAAAGAAAAACAACAAAGAGG 58.370 36.000 0.00 0.00 0.00 3.69
3153 5986 6.042777 GGAGAAAGAAAAACAACAAAGAGGG 58.957 40.000 0.00 0.00 0.00 4.30
3154 5987 5.977635 AGAAAGAAAAACAACAAAGAGGGG 58.022 37.500 0.00 0.00 0.00 4.79
3155 5988 3.819564 AGAAAAACAACAAAGAGGGGC 57.180 42.857 0.00 0.00 0.00 5.80
3156 5989 3.374764 AGAAAAACAACAAAGAGGGGCT 58.625 40.909 0.00 0.00 0.00 5.19
3157 5990 3.132824 AGAAAAACAACAAAGAGGGGCTG 59.867 43.478 0.00 0.00 0.00 4.85
3158 5991 2.159179 AAACAACAAAGAGGGGCTGT 57.841 45.000 0.00 0.00 0.00 4.40
3159 5992 3.306472 AAACAACAAAGAGGGGCTGTA 57.694 42.857 0.00 0.00 0.00 2.74
3160 5993 2.568623 ACAACAAAGAGGGGCTGTAG 57.431 50.000 0.00 0.00 0.00 2.74
3161 5994 2.054799 ACAACAAAGAGGGGCTGTAGA 58.945 47.619 0.00 0.00 0.00 2.59
3162 5995 2.441750 ACAACAAAGAGGGGCTGTAGAA 59.558 45.455 0.00 0.00 0.00 2.10
3163 5996 2.814336 CAACAAAGAGGGGCTGTAGAAC 59.186 50.000 0.00 0.00 0.00 3.01
3164 5997 1.002087 ACAAAGAGGGGCTGTAGAACG 59.998 52.381 0.00 0.00 0.00 3.95
3165 5998 0.036294 AAAGAGGGGCTGTAGAACGC 60.036 55.000 0.00 0.00 0.00 4.84
3166 5999 1.900545 AAGAGGGGCTGTAGAACGCC 61.901 60.000 0.00 0.00 45.55 5.68
3171 6004 2.200052 GGCTGTAGAACGCCCTAGT 58.800 57.895 0.00 0.00 40.43 2.57
3172 6005 0.535797 GGCTGTAGAACGCCCTAGTT 59.464 55.000 0.00 0.00 40.43 2.24
3177 6010 2.510918 GAACGCCCTAGTTCCGGC 60.511 66.667 0.00 0.00 43.33 6.13
3178 6011 4.091939 AACGCCCTAGTTCCGGCC 62.092 66.667 0.00 0.00 42.53 6.13
3180 6013 4.530857 CGCCCTAGTTCCGGCCAG 62.531 72.222 2.24 0.00 42.53 4.85
3181 6014 3.081409 GCCCTAGTTCCGGCCAGA 61.081 66.667 2.24 0.00 39.39 3.86
3182 6015 2.901042 CCCTAGTTCCGGCCAGAC 59.099 66.667 2.24 0.00 0.00 3.51
3183 6016 2.732619 CCCTAGTTCCGGCCAGACC 61.733 68.421 2.24 0.00 0.00 3.85
3201 6034 2.823628 CGAGTCGGAGAACCCAAAC 58.176 57.895 4.10 0.00 39.69 2.93
3202 6035 0.669625 CGAGTCGGAGAACCCAAACC 60.670 60.000 4.10 0.00 39.69 3.27
3203 6036 0.321387 GAGTCGGAGAACCCAAACCC 60.321 60.000 0.00 0.00 39.69 4.11
3204 6037 1.303074 GTCGGAGAACCCAAACCCC 60.303 63.158 0.00 0.00 39.69 4.95
3205 6038 1.770927 TCGGAGAACCCAAACCCCA 60.771 57.895 0.00 0.00 34.14 4.96
3206 6039 1.602605 CGGAGAACCCAAACCCCAC 60.603 63.158 0.00 0.00 34.14 4.61
3207 6040 1.539665 GGAGAACCCAAACCCCACA 59.460 57.895 0.00 0.00 34.14 4.17
3208 6041 0.826256 GGAGAACCCAAACCCCACAC 60.826 60.000 0.00 0.00 34.14 3.82
3209 6042 0.106419 GAGAACCCAAACCCCACACA 60.106 55.000 0.00 0.00 0.00 3.72
3210 6043 0.396556 AGAACCCAAACCCCACACAC 60.397 55.000 0.00 0.00 0.00 3.82
3211 6044 0.396556 GAACCCAAACCCCACACACT 60.397 55.000 0.00 0.00 0.00 3.55
3212 6045 0.396556 AACCCAAACCCCACACACTC 60.397 55.000 0.00 0.00 0.00 3.51
3213 6046 1.530655 CCCAAACCCCACACACTCC 60.531 63.158 0.00 0.00 0.00 3.85
3214 6047 1.228793 CCAAACCCCACACACTCCA 59.771 57.895 0.00 0.00 0.00 3.86
3215 6048 0.823356 CCAAACCCCACACACTCCAG 60.823 60.000 0.00 0.00 0.00 3.86
3216 6049 0.823356 CAAACCCCACACACTCCAGG 60.823 60.000 0.00 0.00 0.00 4.45
3217 6050 0.991355 AAACCCCACACACTCCAGGA 60.991 55.000 0.00 0.00 0.00 3.86
3218 6051 1.705997 AACCCCACACACTCCAGGAC 61.706 60.000 0.00 0.00 0.00 3.85
3219 6052 2.343758 CCCACACACTCCAGGACG 59.656 66.667 0.00 0.00 0.00 4.79
3220 6053 2.207229 CCCACACACTCCAGGACGA 61.207 63.158 0.00 0.00 0.00 4.20
3221 6054 1.290324 CCACACACTCCAGGACGAG 59.710 63.158 0.00 0.00 35.88 4.18
3222 6055 1.290324 CACACACTCCAGGACGAGG 59.710 63.158 0.00 0.00 33.93 4.63
3223 6056 2.262915 CACACTCCAGGACGAGGC 59.737 66.667 0.00 0.00 33.93 4.70
3224 6057 2.203640 ACACTCCAGGACGAGGCA 60.204 61.111 0.00 0.00 33.93 4.75
3225 6058 1.610673 ACACTCCAGGACGAGGCAT 60.611 57.895 0.00 0.00 33.93 4.40
3226 6059 0.324368 ACACTCCAGGACGAGGCATA 60.324 55.000 0.00 0.00 33.93 3.14
3227 6060 0.103208 CACTCCAGGACGAGGCATAC 59.897 60.000 0.00 0.00 33.93 2.39
3228 6061 0.324368 ACTCCAGGACGAGGCATACA 60.324 55.000 0.00 0.00 33.93 2.29
3229 6062 0.824109 CTCCAGGACGAGGCATACAA 59.176 55.000 0.00 0.00 0.00 2.41
3230 6063 0.824109 TCCAGGACGAGGCATACAAG 59.176 55.000 0.00 0.00 0.00 3.16
3231 6064 0.824109 CCAGGACGAGGCATACAAGA 59.176 55.000 0.00 0.00 0.00 3.02
3232 6065 1.414181 CCAGGACGAGGCATACAAGAT 59.586 52.381 0.00 0.00 0.00 2.40
3233 6066 2.628178 CCAGGACGAGGCATACAAGATA 59.372 50.000 0.00 0.00 0.00 1.98
3234 6067 3.553096 CCAGGACGAGGCATACAAGATAC 60.553 52.174 0.00 0.00 0.00 2.24
3235 6068 3.068165 CAGGACGAGGCATACAAGATACA 59.932 47.826 0.00 0.00 0.00 2.29
3236 6069 3.704566 AGGACGAGGCATACAAGATACAA 59.295 43.478 0.00 0.00 0.00 2.41
3237 6070 3.802685 GGACGAGGCATACAAGATACAAC 59.197 47.826 0.00 0.00 0.00 3.32
3238 6071 3.793559 ACGAGGCATACAAGATACAACC 58.206 45.455 0.00 0.00 0.00 3.77
3239 6072 3.196901 ACGAGGCATACAAGATACAACCA 59.803 43.478 0.00 0.00 0.00 3.67
3240 6073 4.141711 ACGAGGCATACAAGATACAACCAT 60.142 41.667 0.00 0.00 0.00 3.55
3241 6074 4.212004 CGAGGCATACAAGATACAACCATG 59.788 45.833 0.00 0.00 0.00 3.66
3242 6075 5.116084 AGGCATACAAGATACAACCATGT 57.884 39.130 0.00 0.00 43.74 3.21
3243 6076 5.509498 AGGCATACAAGATACAACCATGTT 58.491 37.500 0.00 0.00 41.05 2.71
3244 6077 5.357878 AGGCATACAAGATACAACCATGTTG 59.642 40.000 5.46 5.46 41.05 3.33
3245 6078 5.125417 GGCATACAAGATACAACCATGTTGT 59.875 40.000 15.96 15.96 42.88 3.32
3246 6079 6.258160 GCATACAAGATACAACCATGTTGTC 58.742 40.000 15.23 3.69 40.44 3.18
3247 6080 6.094048 GCATACAAGATACAACCATGTTGTCT 59.906 38.462 15.23 6.77 40.44 3.41
3248 6081 5.947228 ACAAGATACAACCATGTTGTCTG 57.053 39.130 15.23 11.19 37.76 3.51
3249 6082 4.216257 ACAAGATACAACCATGTTGTCTGC 59.784 41.667 15.23 7.13 37.76 4.26
3250 6083 4.292186 AGATACAACCATGTTGTCTGCT 57.708 40.909 15.23 9.00 41.05 4.24
3251 6084 4.256920 AGATACAACCATGTTGTCTGCTC 58.743 43.478 15.23 9.00 41.05 4.26
3252 6085 1.609208 ACAACCATGTTGTCTGCTCC 58.391 50.000 6.78 0.00 35.91 4.70
3253 6086 1.133823 ACAACCATGTTGTCTGCTCCA 60.134 47.619 6.78 0.00 35.91 3.86
3254 6087 2.165167 CAACCATGTTGTCTGCTCCAT 58.835 47.619 0.00 0.00 0.00 3.41
3255 6088 3.244875 ACAACCATGTTGTCTGCTCCATA 60.245 43.478 6.78 0.00 35.91 2.74
3256 6089 3.272574 ACCATGTTGTCTGCTCCATAG 57.727 47.619 0.00 0.00 0.00 2.23
3257 6090 2.573462 ACCATGTTGTCTGCTCCATAGT 59.427 45.455 0.00 0.00 0.00 2.12
3258 6091 3.774766 ACCATGTTGTCTGCTCCATAGTA 59.225 43.478 0.00 0.00 0.00 1.82
3259 6092 4.122776 CCATGTTGTCTGCTCCATAGTAC 58.877 47.826 0.00 0.00 0.00 2.73
3260 6093 4.383010 CCATGTTGTCTGCTCCATAGTACA 60.383 45.833 0.00 0.00 0.00 2.90
3261 6094 4.882842 TGTTGTCTGCTCCATAGTACAA 57.117 40.909 0.00 0.00 0.00 2.41
3262 6095 5.222079 TGTTGTCTGCTCCATAGTACAAA 57.778 39.130 0.00 0.00 0.00 2.83
3263 6096 4.994852 TGTTGTCTGCTCCATAGTACAAAC 59.005 41.667 0.00 0.00 0.00 2.93
3264 6097 3.845178 TGTCTGCTCCATAGTACAAACG 58.155 45.455 0.00 0.00 0.00 3.60
3265 6098 3.257375 TGTCTGCTCCATAGTACAAACGT 59.743 43.478 0.00 0.00 0.00 3.99
3266 6099 3.612860 GTCTGCTCCATAGTACAAACGTG 59.387 47.826 0.00 0.00 0.00 4.49
3267 6100 2.930040 CTGCTCCATAGTACAAACGTGG 59.070 50.000 0.00 0.00 37.51 4.94
3268 6101 1.664151 GCTCCATAGTACAAACGTGGC 59.336 52.381 0.00 0.00 36.66 5.01
3269 6102 2.277084 CTCCATAGTACAAACGTGGCC 58.723 52.381 0.00 0.00 36.66 5.36
3270 6103 1.003851 CCATAGTACAAACGTGGCCG 58.996 55.000 0.00 0.00 40.83 6.13
3271 6104 1.404449 CCATAGTACAAACGTGGCCGA 60.404 52.381 0.00 0.00 37.88 5.54
3272 6105 1.924524 CATAGTACAAACGTGGCCGAG 59.075 52.381 0.00 0.00 37.88 4.63
3273 6106 1.246649 TAGTACAAACGTGGCCGAGA 58.753 50.000 0.00 0.00 37.88 4.04
3274 6107 0.319297 AGTACAAACGTGGCCGAGAC 60.319 55.000 0.00 0.00 37.88 3.36
3275 6108 0.598158 GTACAAACGTGGCCGAGACA 60.598 55.000 0.00 0.00 37.88 3.41
3276 6109 0.104487 TACAAACGTGGCCGAGACAA 59.896 50.000 0.00 0.00 37.88 3.18
3277 6110 0.745128 ACAAACGTGGCCGAGACAAA 60.745 50.000 0.00 0.00 37.88 2.83
3278 6111 0.316689 CAAACGTGGCCGAGACAAAC 60.317 55.000 0.00 0.00 37.88 2.93
3279 6112 1.441732 AAACGTGGCCGAGACAAACC 61.442 55.000 0.00 0.00 37.88 3.27
3280 6113 2.030562 CGTGGCCGAGACAAACCT 59.969 61.111 0.00 0.00 35.63 3.50
3281 6114 2.027625 CGTGGCCGAGACAAACCTC 61.028 63.158 0.00 0.00 35.63 3.85
3282 6115 1.371558 GTGGCCGAGACAAACCTCT 59.628 57.895 0.00 0.00 0.00 3.69
3283 6116 0.606604 GTGGCCGAGACAAACCTCTA 59.393 55.000 0.00 0.00 0.00 2.43
3284 6117 0.895530 TGGCCGAGACAAACCTCTAG 59.104 55.000 0.00 0.00 0.00 2.43
3285 6118 1.183549 GGCCGAGACAAACCTCTAGA 58.816 55.000 0.00 0.00 0.00 2.43
3286 6119 1.549170 GGCCGAGACAAACCTCTAGAA 59.451 52.381 0.00 0.00 0.00 2.10
3287 6120 2.417515 GGCCGAGACAAACCTCTAGAAG 60.418 54.545 0.00 0.00 0.00 2.85
3288 6121 2.492484 GCCGAGACAAACCTCTAGAAGA 59.508 50.000 0.00 0.00 0.00 2.87
3289 6122 3.428316 GCCGAGACAAACCTCTAGAAGAG 60.428 52.174 0.00 0.00 41.96 2.85
3290 6123 4.011023 CCGAGACAAACCTCTAGAAGAGA 58.989 47.826 5.50 0.00 45.07 3.10
3291 6124 4.459685 CCGAGACAAACCTCTAGAAGAGAA 59.540 45.833 5.50 0.00 45.07 2.87
3292 6125 5.395642 CGAGACAAACCTCTAGAAGAGAAC 58.604 45.833 5.50 0.00 45.07 3.01
3293 6126 5.048643 CGAGACAAACCTCTAGAAGAGAACA 60.049 44.000 5.50 0.00 45.07 3.18
3294 6127 6.091718 AGACAAACCTCTAGAAGAGAACAC 57.908 41.667 5.50 0.00 45.07 3.32
3295 6128 5.011227 AGACAAACCTCTAGAAGAGAACACC 59.989 44.000 5.50 0.00 45.07 4.16
3296 6129 4.654262 ACAAACCTCTAGAAGAGAACACCA 59.346 41.667 5.50 0.00 45.07 4.17
3297 6130 5.130477 ACAAACCTCTAGAAGAGAACACCAA 59.870 40.000 5.50 0.00 45.07 3.67
3298 6131 5.888982 AACCTCTAGAAGAGAACACCAAA 57.111 39.130 5.50 0.00 45.07 3.28
3299 6132 5.476091 ACCTCTAGAAGAGAACACCAAAG 57.524 43.478 5.50 0.00 45.07 2.77
3300 6133 4.284746 ACCTCTAGAAGAGAACACCAAAGG 59.715 45.833 5.50 0.00 45.07 3.11
3301 6134 4.284746 CCTCTAGAAGAGAACACCAAAGGT 59.715 45.833 5.50 0.00 45.07 3.50
3315 6148 5.601583 ACCAAAGGTGTCCGTTTATTTTT 57.398 34.783 0.00 0.00 32.98 1.94
3316 6149 5.353111 ACCAAAGGTGTCCGTTTATTTTTG 58.647 37.500 0.00 0.00 32.98 2.44
3317 6150 4.210328 CCAAAGGTGTCCGTTTATTTTTGC 59.790 41.667 0.00 0.00 0.00 3.68
3318 6151 3.276882 AGGTGTCCGTTTATTTTTGCG 57.723 42.857 0.00 0.00 0.00 4.85
3319 6152 2.619646 AGGTGTCCGTTTATTTTTGCGT 59.380 40.909 0.00 0.00 0.00 5.24
3320 6153 2.722116 GGTGTCCGTTTATTTTTGCGTG 59.278 45.455 0.00 0.00 0.00 5.34
3321 6154 2.722116 GTGTCCGTTTATTTTTGCGTGG 59.278 45.455 0.00 0.00 0.00 4.94
3322 6155 2.287668 TGTCCGTTTATTTTTGCGTGGG 60.288 45.455 0.00 0.00 0.00 4.61
3323 6156 1.064582 CCGTTTATTTTTGCGTGGGC 58.935 50.000 0.00 0.00 40.52 5.36
3324 6157 0.705639 CGTTTATTTTTGCGTGGGCG 59.294 50.000 0.00 0.00 44.10 6.13
3335 6168 3.127533 GTGGGCGCTGATGGTGTC 61.128 66.667 7.64 0.00 0.00 3.67
3339 6172 2.475466 GGCGCTGATGGTGTCCATG 61.475 63.158 7.64 0.00 45.26 3.66
3340 6173 1.450134 GCGCTGATGGTGTCCATGA 60.450 57.895 0.00 0.00 45.26 3.07
3341 6174 1.709147 GCGCTGATGGTGTCCATGAC 61.709 60.000 0.00 0.00 45.26 3.06
3342 6175 1.091771 CGCTGATGGTGTCCATGACC 61.092 60.000 5.98 0.00 45.26 4.02
3343 6176 1.091771 GCTGATGGTGTCCATGACCG 61.092 60.000 5.98 0.00 45.26 4.79
3344 6177 0.250234 CTGATGGTGTCCATGACCGT 59.750 55.000 5.98 0.00 45.26 4.83
3345 6178 0.690192 TGATGGTGTCCATGACCGTT 59.310 50.000 5.98 0.00 45.26 4.44
3346 6179 1.086696 GATGGTGTCCATGACCGTTG 58.913 55.000 5.98 0.00 45.26 4.10
3347 6180 0.960364 ATGGTGTCCATGACCGTTGC 60.960 55.000 0.00 0.00 43.39 4.17
3348 6181 2.332654 GGTGTCCATGACCGTTGCC 61.333 63.158 0.00 0.00 0.00 4.52
3349 6182 1.599518 GTGTCCATGACCGTTGCCA 60.600 57.895 0.00 0.00 0.00 4.92
3350 6183 1.599518 TGTCCATGACCGTTGCCAC 60.600 57.895 0.00 0.00 0.00 5.01
3351 6184 1.599518 GTCCATGACCGTTGCCACA 60.600 57.895 0.00 0.00 0.00 4.17
3352 6185 0.960364 GTCCATGACCGTTGCCACAT 60.960 55.000 0.00 0.00 0.00 3.21
3353 6186 0.251121 TCCATGACCGTTGCCACATT 60.251 50.000 0.00 0.00 0.00 2.71
3354 6187 0.602562 CCATGACCGTTGCCACATTT 59.397 50.000 0.00 0.00 0.00 2.32
3355 6188 1.000731 CCATGACCGTTGCCACATTTT 59.999 47.619 0.00 0.00 0.00 1.82
3356 6189 2.547642 CCATGACCGTTGCCACATTTTT 60.548 45.455 0.00 0.00 0.00 1.94
3401 6234 8.731275 ATCCGACATCAGATTTATAACAAACA 57.269 30.769 0.00 0.00 0.00 2.83
3402 6235 8.731275 TCCGACATCAGATTTATAACAAACAT 57.269 30.769 0.00 0.00 0.00 2.71
3403 6236 8.611757 TCCGACATCAGATTTATAACAAACATG 58.388 33.333 0.00 0.00 0.00 3.21
3404 6237 8.397906 CCGACATCAGATTTATAACAAACATGT 58.602 33.333 0.00 0.00 0.00 3.21
3405 6238 9.213819 CGACATCAGATTTATAACAAACATGTG 57.786 33.333 0.00 0.00 0.00 3.21
3407 6240 9.844790 ACATCAGATTTATAACAAACATGTGTG 57.155 29.630 14.75 14.75 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
362 2162 0.316841 GGCCCGAAACAAGCAAATCA 59.683 50.000 0.00 0.00 0.00 2.57
395 2195 1.865970 CGAGATCTGAAAGCTGCATCC 59.134 52.381 0.00 0.00 0.00 3.51
422 2222 7.685884 GCAACTTTTCCTTATTGTAAACCAGGT 60.686 37.037 0.00 0.00 31.64 4.00
433 2233 3.892588 TCCCGTTGCAACTTTTCCTTATT 59.107 39.130 26.09 0.00 0.00 1.40
441 2241 1.106944 CCCACTCCCGTTGCAACTTT 61.107 55.000 26.09 3.96 0.00 2.66
751 2574 9.701098 CATTATGTGCTATGCCATTTATTTCTT 57.299 29.630 0.00 0.00 0.00 2.52
836 2659 5.380043 ACAGGACAAGAATTATGCCTATGG 58.620 41.667 0.00 0.00 0.00 2.74
851 2674 6.183361 TGGAAAGAAGAGATACAACAGGACAA 60.183 38.462 0.00 0.00 0.00 3.18
883 2706 3.756963 GTGAATTACAAACTCCTGGTCCC 59.243 47.826 0.00 0.00 0.00 4.46
887 2710 2.811431 TGCGTGAATTACAAACTCCTGG 59.189 45.455 0.00 0.00 0.00 4.45
925 2748 1.134491 GCAAACTACAGGTAGCCGGAT 60.134 52.381 5.05 0.00 36.66 4.18
984 2820 3.550431 ATGGAGATGGCCGGACGG 61.550 66.667 5.05 6.35 38.57 4.79
1346 3198 5.444745 GCTCGCAGAAATAACACTACTTGAC 60.445 44.000 0.00 0.00 34.09 3.18
1351 3203 3.307242 CCTGCTCGCAGAAATAACACTAC 59.693 47.826 19.78 0.00 46.30 2.73
1359 3211 2.273449 CCCCCTGCTCGCAGAAAT 59.727 61.111 19.78 0.00 46.30 2.17
1434 3286 2.171079 CATTGCACCGCCGATACGT 61.171 57.895 0.00 0.00 0.00 3.57
1533 3385 3.624777 ACTTCGGCATGGATTTCTTCAT 58.375 40.909 0.00 0.00 0.00 2.57
1562 3414 1.887707 GATCAGTTTAGCCCCCGCG 60.888 63.158 0.00 0.00 41.18 6.46
1598 3450 1.089920 GAATGCGTGCCTTGTCAGAT 58.910 50.000 0.00 0.00 0.00 2.90
1640 3492 2.680841 CAACCAGGAAACACGAACTCAA 59.319 45.455 0.00 0.00 0.00 3.02
1680 3538 6.029346 ACCACTTATTCCAGCATTTTGAAG 57.971 37.500 0.00 0.00 0.00 3.02
1684 3542 4.079253 ACGACCACTTATTCCAGCATTTT 58.921 39.130 0.00 0.00 0.00 1.82
1686 3544 3.055094 AGACGACCACTTATTCCAGCATT 60.055 43.478 0.00 0.00 0.00 3.56
1687 3545 2.501723 AGACGACCACTTATTCCAGCAT 59.498 45.455 0.00 0.00 0.00 3.79
1689 3547 2.673368 CAAGACGACCACTTATTCCAGC 59.327 50.000 0.00 0.00 0.00 4.85
1691 3549 4.221924 TCATCAAGACGACCACTTATTCCA 59.778 41.667 0.00 0.00 0.00 3.53
1693 3551 5.651530 TCTCATCAAGACGACCACTTATTC 58.348 41.667 0.00 0.00 0.00 1.75
1695 3553 5.860941 ATCTCATCAAGACGACCACTTAT 57.139 39.130 0.00 0.00 36.65 1.73
1696 3554 5.185056 TGAATCTCATCAAGACGACCACTTA 59.815 40.000 0.00 0.00 36.65 2.24
1697 3555 4.021104 TGAATCTCATCAAGACGACCACTT 60.021 41.667 0.00 0.00 36.65 3.16
1698 3556 3.511540 TGAATCTCATCAAGACGACCACT 59.488 43.478 0.00 0.00 36.65 4.00
1704 3588 6.312180 TGATCAAACTGAATCTCATCAAGACG 59.688 38.462 0.00 0.00 36.65 4.18
1746 3630 3.427161 AGAAGCAGAACAAGTGCAAAC 57.573 42.857 0.00 0.00 43.82 2.93
1793 3677 3.321111 GCAATGCAAATCATCCCAGAGAT 59.679 43.478 0.00 0.00 33.40 2.75
1874 3758 6.828273 TGATGTTGAAGAACGGATTAATGGAT 59.172 34.615 0.00 0.00 34.49 3.41
1894 3797 5.121298 CGTCAGTCAATCAGTCATTTGATGT 59.879 40.000 0.00 0.00 37.83 3.06
1895 3798 5.446875 CCGTCAGTCAATCAGTCATTTGATG 60.447 44.000 0.00 0.00 37.83 3.07
1897 3800 3.996363 CCGTCAGTCAATCAGTCATTTGA 59.004 43.478 0.00 0.00 0.00 2.69
1899 3802 3.748048 CACCGTCAGTCAATCAGTCATTT 59.252 43.478 0.00 0.00 0.00 2.32
1901 3804 2.562738 TCACCGTCAGTCAATCAGTCAT 59.437 45.455 0.00 0.00 0.00 3.06
1909 3968 2.628178 AGATGAGTTCACCGTCAGTCAA 59.372 45.455 0.00 0.00 0.00 3.18
1984 4043 1.275291 GTGCTTACACTGGCTGGACTA 59.725 52.381 0.00 0.00 43.85 2.59
2079 4157 9.197694 GAGTATATTTTAGACTTCATCATGCGT 57.802 33.333 0.00 0.00 28.94 5.24
2130 4208 4.023707 CCTTTGAGCTTGTAGTTCTTGGTG 60.024 45.833 0.00 0.00 0.00 4.17
2144 4222 2.281761 CCGGTGTGCCTTTGAGCT 60.282 61.111 0.00 0.00 0.00 4.09
2148 4226 2.594303 TCTGCCGGTGTGCCTTTG 60.594 61.111 1.90 0.00 0.00 2.77
2176 4254 1.816835 CAGTTCAACCTGCTGCATGAT 59.183 47.619 11.93 0.00 0.00 2.45
2191 4269 0.531200 AGGACCGACGGATTCAGTTC 59.469 55.000 23.38 5.28 0.00 3.01
2200 4278 0.945813 GAGATACAGAGGACCGACGG 59.054 60.000 13.61 13.61 0.00 4.79
2205 4283 2.959707 ACGAATGGAGATACAGAGGACC 59.040 50.000 0.00 0.00 0.00 4.46
2224 4302 6.109359 AGGATCAAACTTCTTCAGGATAACG 58.891 40.000 0.00 0.00 0.00 3.18
2228 4306 8.331740 TCAATTAGGATCAAACTTCTTCAGGAT 58.668 33.333 0.00 0.00 0.00 3.24
2242 4351 3.130633 CGCGACCAATCAATTAGGATCA 58.869 45.455 0.00 0.00 0.00 2.92
2247 4356 3.740044 AACACGCGACCAATCAATTAG 57.260 42.857 15.93 0.00 0.00 1.73
2260 4369 1.938814 CAACACCAGCAAACACGCG 60.939 57.895 3.53 3.53 36.85 6.01
2262 4371 0.172352 AACCAACACCAGCAAACACG 59.828 50.000 0.00 0.00 0.00 4.49
2272 4382 0.755327 ACCCTGCAGAAACCAACACC 60.755 55.000 17.39 0.00 0.00 4.16
2279 4389 0.251341 ACATCCCACCCTGCAGAAAC 60.251 55.000 17.39 0.00 0.00 2.78
2306 4416 1.742308 ACAGCAGTTCTTTCCCCCTA 58.258 50.000 0.00 0.00 0.00 3.53
2309 4419 1.439679 CGTACAGCAGTTCTTTCCCC 58.560 55.000 0.00 0.00 0.00 4.81
2373 4483 1.447838 GGCGACAGATGCCGAGAAA 60.448 57.895 0.00 0.00 43.70 2.52
2401 4511 2.483877 TGCCTGATAAAACGTCAAGCAG 59.516 45.455 0.00 0.00 37.93 4.24
2423 4533 7.038048 AGATCGGTCAGTGCAATATACATATG 58.962 38.462 0.00 0.00 0.00 1.78
2478 4588 3.065371 GGTGAAACTTGTGACTTGTGAGG 59.935 47.826 0.00 0.00 36.74 3.86
2491 4601 9.965824 CTTATATCAAACAAACAGGTGAAACTT 57.034 29.630 0.00 0.00 36.74 2.66
2492 4602 8.082242 GCTTATATCAAACAAACAGGTGAAACT 58.918 33.333 0.00 0.00 36.74 2.66
2493 4603 7.328493 GGCTTATATCAAACAAACAGGTGAAAC 59.672 37.037 0.00 0.00 0.00 2.78
2494 4604 7.014711 TGGCTTATATCAAACAAACAGGTGAAA 59.985 33.333 0.00 0.00 0.00 2.69
2498 4608 6.010219 AGTGGCTTATATCAAACAAACAGGT 58.990 36.000 0.00 0.00 0.00 4.00
2554 4666 0.179205 GACGAGCAGCAGCAAATGTC 60.179 55.000 3.17 1.74 45.49 3.06
2555 4667 0.886043 TGACGAGCAGCAGCAAATGT 60.886 50.000 3.17 0.00 45.49 2.71
2611 4724 5.634859 CAGATGCCAAGAACATTTACCAAAC 59.365 40.000 0.00 0.00 0.00 2.93
2637 4750 1.134965 CCAAACAACCGAAACTTGGCA 60.135 47.619 0.00 0.00 30.84 4.92
2646 4759 5.388408 AAGTAAAAACACCAAACAACCGA 57.612 34.783 0.00 0.00 0.00 4.69
2647 4760 4.563580 GGAAGTAAAAACACCAAACAACCG 59.436 41.667 0.00 0.00 0.00 4.44
2652 4765 4.739587 TGGGGAAGTAAAAACACCAAAC 57.260 40.909 0.00 0.00 33.94 2.93
2653 4766 4.717280 ACATGGGGAAGTAAAAACACCAAA 59.283 37.500 0.00 0.00 40.59 3.28
2657 4770 5.525745 CCAAAACATGGGGAAGTAAAAACAC 59.474 40.000 0.00 0.00 46.27 3.32
2658 4771 5.675538 CCAAAACATGGGGAAGTAAAAACA 58.324 37.500 0.00 0.00 46.27 2.83
2719 4834 7.805700 ACCTTTGCAAAATTTATTTTCGATGG 58.194 30.769 13.84 7.93 37.86 3.51
2758 4873 8.621532 ACTACACTCATTGTTGTGTTTCATAT 57.378 30.769 17.84 1.57 43.88 1.78
2760 4875 6.542005 TGACTACACTCATTGTTGTGTTTCAT 59.458 34.615 17.84 6.83 43.24 2.57
2863 5693 8.435931 AGGGACTGCTACATAATATATGACAA 57.564 34.615 4.47 0.00 37.18 3.18
2916 5748 6.351286 GCACCCTTCAGGATTTTGATGTATTT 60.351 38.462 0.00 0.00 39.89 1.40
2925 5757 0.404040 TCGGCACCCTTCAGGATTTT 59.596 50.000 0.00 0.00 39.89 1.82
2929 5761 1.827399 GACTTCGGCACCCTTCAGGA 61.827 60.000 0.00 0.00 39.89 3.86
2933 5765 0.321996 AGAAGACTTCGGCACCCTTC 59.678 55.000 9.53 0.00 34.92 3.46
2951 5783 3.082165 CAGCAGATGCAGGAGGAAG 57.918 57.895 7.68 0.00 45.16 3.46
2966 5798 3.182472 CTCATGATGCGCTGCCAGC 62.182 63.158 9.73 6.63 38.02 4.85
2968 5800 3.206957 GCTCATGATGCGCTGCCA 61.207 61.111 9.73 3.98 0.00 4.92
2972 5804 0.679002 AGGTTTGCTCATGATGCGCT 60.679 50.000 9.73 0.00 0.00 5.92
3001 5833 1.728672 CCGAGAAGGACGCCTAGAC 59.271 63.158 0.00 0.00 45.00 2.59
3009 5841 1.223187 TTTGTTTCGCCGAGAAGGAC 58.777 50.000 0.00 0.00 45.00 3.85
3013 5845 3.701532 ACAAATTTGTTTCGCCGAGAA 57.298 38.095 18.13 0.00 38.47 2.87
3024 5856 9.529325 GAAGCTTCTAGGTTTAAACAAATTTGT 57.471 29.630 18.13 18.13 38.43 2.83
3029 5861 8.514330 TTCAGAAGCTTCTAGGTTTAAACAAA 57.486 30.769 28.02 6.22 35.86 2.83
3041 5873 4.680708 CGGCCACTAATTCAGAAGCTTCTA 60.681 45.833 28.02 14.85 35.34 2.10
3044 5876 2.290323 ACGGCCACTAATTCAGAAGCTT 60.290 45.455 2.24 0.00 0.00 3.74
3050 5882 2.673368 GACTTCACGGCCACTAATTCAG 59.327 50.000 2.24 0.00 0.00 3.02
3052 5884 1.659098 CGACTTCACGGCCACTAATTC 59.341 52.381 2.24 0.00 0.00 2.17
3056 5889 0.319211 CAACGACTTCACGGCCACTA 60.319 55.000 2.24 0.00 37.61 2.74
3062 5895 2.915463 GTCTACATCAACGACTTCACGG 59.085 50.000 0.00 0.00 37.61 4.94
3065 5898 6.653740 TCTTCTAGTCTACATCAACGACTTCA 59.346 38.462 0.00 0.00 38.77 3.02
3074 5907 6.113411 TGACGATGTCTTCTAGTCTACATCA 58.887 40.000 22.16 10.65 45.44 3.07
3108 5941 3.186001 CCAGAGCGATGATTTGCTATGTC 59.814 47.826 12.16 0.00 46.03 3.06
3109 5942 3.136763 CCAGAGCGATGATTTGCTATGT 58.863 45.455 12.16 0.00 46.03 2.29
3110 5943 3.396560 TCCAGAGCGATGATTTGCTATG 58.603 45.455 7.87 7.87 46.70 2.23
3111 5944 3.323115 TCTCCAGAGCGATGATTTGCTAT 59.677 43.478 0.00 0.00 42.94 2.97
3112 5945 2.695147 TCTCCAGAGCGATGATTTGCTA 59.305 45.455 0.00 0.00 42.94 3.49
3113 5946 1.483827 TCTCCAGAGCGATGATTTGCT 59.516 47.619 0.00 0.00 45.70 3.91
3114 5947 1.945387 TCTCCAGAGCGATGATTTGC 58.055 50.000 0.00 0.00 0.00 3.68
3115 5948 4.186926 TCTTTCTCCAGAGCGATGATTTG 58.813 43.478 0.00 0.00 0.00 2.32
3116 5949 4.478206 TCTTTCTCCAGAGCGATGATTT 57.522 40.909 0.00 0.00 0.00 2.17
3117 5950 4.478206 TTCTTTCTCCAGAGCGATGATT 57.522 40.909 0.00 0.00 0.00 2.57
3118 5951 4.478206 TTTCTTTCTCCAGAGCGATGAT 57.522 40.909 0.00 0.00 0.00 2.45
3119 5952 3.961480 TTTCTTTCTCCAGAGCGATGA 57.039 42.857 0.00 0.00 0.00 2.92
3120 5953 4.214119 TGTTTTTCTTTCTCCAGAGCGATG 59.786 41.667 0.00 0.00 0.00 3.84
3121 5954 4.389374 TGTTTTTCTTTCTCCAGAGCGAT 58.611 39.130 0.00 0.00 0.00 4.58
3122 5955 3.804036 TGTTTTTCTTTCTCCAGAGCGA 58.196 40.909 0.00 0.00 0.00 4.93
3123 5956 4.201910 TGTTGTTTTTCTTTCTCCAGAGCG 60.202 41.667 0.00 0.00 0.00 5.03
3124 5957 5.248870 TGTTGTTTTTCTTTCTCCAGAGC 57.751 39.130 0.00 0.00 0.00 4.09
3125 5958 7.538575 TCTTTGTTGTTTTTCTTTCTCCAGAG 58.461 34.615 0.00 0.00 0.00 3.35
3126 5959 7.362920 CCTCTTTGTTGTTTTTCTTTCTCCAGA 60.363 37.037 0.00 0.00 0.00 3.86
3127 5960 6.753744 CCTCTTTGTTGTTTTTCTTTCTCCAG 59.246 38.462 0.00 0.00 0.00 3.86
3128 5961 6.350949 CCCTCTTTGTTGTTTTTCTTTCTCCA 60.351 38.462 0.00 0.00 0.00 3.86
3129 5962 6.042777 CCCTCTTTGTTGTTTTTCTTTCTCC 58.957 40.000 0.00 0.00 0.00 3.71
3130 5963 6.042777 CCCCTCTTTGTTGTTTTTCTTTCTC 58.957 40.000 0.00 0.00 0.00 2.87
3131 5964 5.626809 GCCCCTCTTTGTTGTTTTTCTTTCT 60.627 40.000 0.00 0.00 0.00 2.52
3132 5965 4.570772 GCCCCTCTTTGTTGTTTTTCTTTC 59.429 41.667 0.00 0.00 0.00 2.62
3133 5966 4.225042 AGCCCCTCTTTGTTGTTTTTCTTT 59.775 37.500 0.00 0.00 0.00 2.52
3134 5967 3.774766 AGCCCCTCTTTGTTGTTTTTCTT 59.225 39.130 0.00 0.00 0.00 2.52
3135 5968 3.132824 CAGCCCCTCTTTGTTGTTTTTCT 59.867 43.478 0.00 0.00 0.00 2.52
3136 5969 3.118775 ACAGCCCCTCTTTGTTGTTTTTC 60.119 43.478 0.00 0.00 0.00 2.29
3137 5970 2.837591 ACAGCCCCTCTTTGTTGTTTTT 59.162 40.909 0.00 0.00 0.00 1.94
3138 5971 2.466846 ACAGCCCCTCTTTGTTGTTTT 58.533 42.857 0.00 0.00 0.00 2.43
3139 5972 2.159179 ACAGCCCCTCTTTGTTGTTT 57.841 45.000 0.00 0.00 0.00 2.83
3140 5973 2.441750 TCTACAGCCCCTCTTTGTTGTT 59.558 45.455 0.00 0.00 0.00 2.83
3141 5974 2.054799 TCTACAGCCCCTCTTTGTTGT 58.945 47.619 0.00 0.00 0.00 3.32
3142 5975 2.814336 GTTCTACAGCCCCTCTTTGTTG 59.186 50.000 0.00 0.00 0.00 3.33
3143 5976 2.550208 CGTTCTACAGCCCCTCTTTGTT 60.550 50.000 0.00 0.00 0.00 2.83
3144 5977 1.002087 CGTTCTACAGCCCCTCTTTGT 59.998 52.381 0.00 0.00 0.00 2.83
3145 5978 1.726853 CGTTCTACAGCCCCTCTTTG 58.273 55.000 0.00 0.00 0.00 2.77
3146 5979 0.036294 GCGTTCTACAGCCCCTCTTT 60.036 55.000 0.00 0.00 0.00 2.52
3147 5980 1.597461 GCGTTCTACAGCCCCTCTT 59.403 57.895 0.00 0.00 0.00 2.85
3148 5981 3.300013 GCGTTCTACAGCCCCTCT 58.700 61.111 0.00 0.00 0.00 3.69
3154 5987 1.471153 GGAACTAGGGCGTTCTACAGC 60.471 57.143 0.00 0.00 42.20 4.40
3155 5988 1.202268 CGGAACTAGGGCGTTCTACAG 60.202 57.143 0.00 0.00 42.20 2.74
3156 5989 0.813184 CGGAACTAGGGCGTTCTACA 59.187 55.000 0.00 0.00 42.20 2.74
3157 5990 0.101939 CCGGAACTAGGGCGTTCTAC 59.898 60.000 0.00 0.00 42.20 2.59
3158 5991 1.669999 GCCGGAACTAGGGCGTTCTA 61.670 60.000 5.05 0.00 42.20 2.10
3159 5992 3.015312 GCCGGAACTAGGGCGTTCT 62.015 63.158 5.05 0.00 42.20 3.01
3160 5993 2.510918 GCCGGAACTAGGGCGTTC 60.511 66.667 5.05 0.00 39.93 3.95
3165 5998 2.732619 GGTCTGGCCGGAACTAGGG 61.733 68.421 23.21 0.00 0.00 3.53
3166 5999 2.901042 GGTCTGGCCGGAACTAGG 59.099 66.667 23.21 0.00 0.00 3.02
3183 6016 0.669625 GGTTTGGGTTCTCCGACTCG 60.670 60.000 0.00 0.00 38.76 4.18
3184 6017 0.321387 GGGTTTGGGTTCTCCGACTC 60.321 60.000 0.00 0.00 38.76 3.36
3185 6018 1.759236 GGGTTTGGGTTCTCCGACT 59.241 57.895 0.00 0.00 38.76 4.18
3186 6019 1.303074 GGGGTTTGGGTTCTCCGAC 60.303 63.158 0.00 0.00 38.76 4.79
3187 6020 1.770927 TGGGGTTTGGGTTCTCCGA 60.771 57.895 0.00 0.00 38.76 4.55
3188 6021 1.602605 GTGGGGTTTGGGTTCTCCG 60.603 63.158 0.00 0.00 38.76 4.63
3189 6022 0.826256 GTGTGGGGTTTGGGTTCTCC 60.826 60.000 0.00 0.00 0.00 3.71
3190 6023 0.106419 TGTGTGGGGTTTGGGTTCTC 60.106 55.000 0.00 0.00 0.00 2.87
3191 6024 0.396556 GTGTGTGGGGTTTGGGTTCT 60.397 55.000 0.00 0.00 0.00 3.01
3192 6025 0.396556 AGTGTGTGGGGTTTGGGTTC 60.397 55.000 0.00 0.00 0.00 3.62
3193 6026 0.396556 GAGTGTGTGGGGTTTGGGTT 60.397 55.000 0.00 0.00 0.00 4.11
3194 6027 1.229076 GAGTGTGTGGGGTTTGGGT 59.771 57.895 0.00 0.00 0.00 4.51
3195 6028 1.530655 GGAGTGTGTGGGGTTTGGG 60.531 63.158 0.00 0.00 0.00 4.12
3196 6029 0.823356 CTGGAGTGTGTGGGGTTTGG 60.823 60.000 0.00 0.00 0.00 3.28
3197 6030 0.823356 CCTGGAGTGTGTGGGGTTTG 60.823 60.000 0.00 0.00 0.00 2.93
3198 6031 0.991355 TCCTGGAGTGTGTGGGGTTT 60.991 55.000 0.00 0.00 0.00 3.27
3199 6032 1.385347 TCCTGGAGTGTGTGGGGTT 60.385 57.895 0.00 0.00 0.00 4.11
3200 6033 2.147387 GTCCTGGAGTGTGTGGGGT 61.147 63.158 0.00 0.00 0.00 4.95
3201 6034 2.750350 GTCCTGGAGTGTGTGGGG 59.250 66.667 0.00 0.00 0.00 4.96
3202 6035 2.159819 CTCGTCCTGGAGTGTGTGGG 62.160 65.000 0.00 0.00 0.00 4.61
3203 6036 1.290324 CTCGTCCTGGAGTGTGTGG 59.710 63.158 0.00 0.00 0.00 4.17
3204 6037 1.290324 CCTCGTCCTGGAGTGTGTG 59.710 63.158 0.00 0.00 31.98 3.82
3205 6038 2.574955 GCCTCGTCCTGGAGTGTGT 61.575 63.158 0.00 0.00 31.98 3.72
3206 6039 1.892819 ATGCCTCGTCCTGGAGTGTG 61.893 60.000 0.00 0.00 31.98 3.82
3207 6040 0.324368 TATGCCTCGTCCTGGAGTGT 60.324 55.000 0.00 0.00 31.98 3.55
3208 6041 0.103208 GTATGCCTCGTCCTGGAGTG 59.897 60.000 0.00 0.00 31.98 3.51
3209 6042 0.324368 TGTATGCCTCGTCCTGGAGT 60.324 55.000 0.00 0.00 31.98 3.85
3210 6043 0.824109 TTGTATGCCTCGTCCTGGAG 59.176 55.000 0.00 0.00 0.00 3.86
3211 6044 0.824109 CTTGTATGCCTCGTCCTGGA 59.176 55.000 0.00 0.00 0.00 3.86
3212 6045 0.824109 TCTTGTATGCCTCGTCCTGG 59.176 55.000 0.00 0.00 0.00 4.45
3213 6046 2.898729 ATCTTGTATGCCTCGTCCTG 57.101 50.000 0.00 0.00 0.00 3.86
3214 6047 3.296854 TGTATCTTGTATGCCTCGTCCT 58.703 45.455 0.00 0.00 0.00 3.85
3215 6048 3.728076 TGTATCTTGTATGCCTCGTCC 57.272 47.619 0.00 0.00 0.00 4.79
3216 6049 3.802685 GGTTGTATCTTGTATGCCTCGTC 59.197 47.826 0.00 0.00 0.00 4.20
3217 6050 3.196901 TGGTTGTATCTTGTATGCCTCGT 59.803 43.478 0.00 0.00 0.00 4.18
3218 6051 3.792401 TGGTTGTATCTTGTATGCCTCG 58.208 45.455 0.00 0.00 0.00 4.63
3219 6052 5.126067 ACATGGTTGTATCTTGTATGCCTC 58.874 41.667 0.00 0.00 33.16 4.70
3220 6053 5.116084 ACATGGTTGTATCTTGTATGCCT 57.884 39.130 0.00 0.00 33.16 4.75
3221 6054 5.125417 ACAACATGGTTGTATCTTGTATGCC 59.875 40.000 12.64 0.00 34.06 4.40
3222 6055 6.094048 AGACAACATGGTTGTATCTTGTATGC 59.906 38.462 14.09 0.00 34.06 3.14
3223 6056 7.466805 CAGACAACATGGTTGTATCTTGTATG 58.533 38.462 14.09 7.44 34.06 2.39
3224 6057 6.094048 GCAGACAACATGGTTGTATCTTGTAT 59.906 38.462 14.09 0.00 34.06 2.29
3225 6058 5.411361 GCAGACAACATGGTTGTATCTTGTA 59.589 40.000 14.09 0.00 34.06 2.41
3226 6059 4.216257 GCAGACAACATGGTTGTATCTTGT 59.784 41.667 14.09 4.19 34.06 3.16
3227 6060 4.456911 AGCAGACAACATGGTTGTATCTTG 59.543 41.667 14.09 11.20 34.06 3.02
3228 6061 4.655963 AGCAGACAACATGGTTGTATCTT 58.344 39.130 14.09 0.34 34.06 2.40
3229 6062 4.256920 GAGCAGACAACATGGTTGTATCT 58.743 43.478 14.09 11.06 34.06 1.98
3230 6063 3.375299 GGAGCAGACAACATGGTTGTATC 59.625 47.826 14.09 10.01 34.06 2.24
3231 6064 3.244875 TGGAGCAGACAACATGGTTGTAT 60.245 43.478 14.09 8.96 34.06 2.29
3232 6065 2.105649 TGGAGCAGACAACATGGTTGTA 59.894 45.455 14.09 0.00 34.06 2.41
3233 6066 1.133823 TGGAGCAGACAACATGGTTGT 60.134 47.619 14.01 14.01 37.82 3.32
3234 6067 1.608055 TGGAGCAGACAACATGGTTG 58.392 50.000 7.51 7.51 0.00 3.77
3235 6068 2.592102 ATGGAGCAGACAACATGGTT 57.408 45.000 0.00 0.00 0.00 3.67
3236 6069 2.573462 ACTATGGAGCAGACAACATGGT 59.427 45.455 0.00 0.00 31.43 3.55
3237 6070 3.272574 ACTATGGAGCAGACAACATGG 57.727 47.619 0.00 0.00 0.00 3.66
3238 6071 4.758688 TGTACTATGGAGCAGACAACATG 58.241 43.478 0.00 0.00 0.00 3.21
3239 6072 5.420725 TTGTACTATGGAGCAGACAACAT 57.579 39.130 0.00 0.00 0.00 2.71
3240 6073 4.882842 TTGTACTATGGAGCAGACAACA 57.117 40.909 0.00 0.00 0.00 3.33
3241 6074 4.091509 CGTTTGTACTATGGAGCAGACAAC 59.908 45.833 0.00 0.00 0.00 3.32
3242 6075 4.242475 CGTTTGTACTATGGAGCAGACAA 58.758 43.478 0.00 0.00 0.00 3.18
3243 6076 3.257375 ACGTTTGTACTATGGAGCAGACA 59.743 43.478 0.00 0.00 0.00 3.41
3244 6077 3.612860 CACGTTTGTACTATGGAGCAGAC 59.387 47.826 0.00 0.00 0.00 3.51
3245 6078 3.368013 CCACGTTTGTACTATGGAGCAGA 60.368 47.826 0.00 0.00 32.59 4.26
3246 6079 2.930040 CCACGTTTGTACTATGGAGCAG 59.070 50.000 0.00 0.00 32.59 4.24
3247 6080 2.933492 GCCACGTTTGTACTATGGAGCA 60.933 50.000 0.00 0.00 32.59 4.26
3248 6081 1.664151 GCCACGTTTGTACTATGGAGC 59.336 52.381 0.00 0.00 32.59 4.70
3249 6082 2.277084 GGCCACGTTTGTACTATGGAG 58.723 52.381 0.00 0.00 32.59 3.86
3250 6083 1.404449 CGGCCACGTTTGTACTATGGA 60.404 52.381 2.24 0.00 32.59 3.41
3251 6084 1.003851 CGGCCACGTTTGTACTATGG 58.996 55.000 2.24 0.00 33.50 2.74
3252 6085 1.924524 CTCGGCCACGTTTGTACTATG 59.075 52.381 2.24 0.00 41.85 2.23
3253 6086 1.820519 TCTCGGCCACGTTTGTACTAT 59.179 47.619 2.24 0.00 41.85 2.12
3254 6087 1.068333 GTCTCGGCCACGTTTGTACTA 60.068 52.381 2.24 0.00 41.85 1.82
3255 6088 0.319297 GTCTCGGCCACGTTTGTACT 60.319 55.000 2.24 0.00 41.85 2.73
3256 6089 0.598158 TGTCTCGGCCACGTTTGTAC 60.598 55.000 2.24 0.00 41.85 2.90
3257 6090 0.104487 TTGTCTCGGCCACGTTTGTA 59.896 50.000 2.24 0.00 41.85 2.41
3258 6091 0.745128 TTTGTCTCGGCCACGTTTGT 60.745 50.000 2.24 0.00 41.85 2.83
3259 6092 0.316689 GTTTGTCTCGGCCACGTTTG 60.317 55.000 2.24 0.00 41.85 2.93
3260 6093 1.441732 GGTTTGTCTCGGCCACGTTT 61.442 55.000 2.24 0.00 41.85 3.60
3261 6094 1.890510 GGTTTGTCTCGGCCACGTT 60.891 57.895 2.24 0.00 41.85 3.99
3262 6095 2.280592 GGTTTGTCTCGGCCACGT 60.281 61.111 2.24 0.00 41.85 4.49
3263 6096 2.027625 GAGGTTTGTCTCGGCCACG 61.028 63.158 2.24 0.00 42.74 4.94
3264 6097 0.606604 TAGAGGTTTGTCTCGGCCAC 59.393 55.000 2.24 0.00 38.71 5.01
3265 6098 0.895530 CTAGAGGTTTGTCTCGGCCA 59.104 55.000 2.24 0.00 38.71 5.36
3266 6099 1.183549 TCTAGAGGTTTGTCTCGGCC 58.816 55.000 0.00 0.00 38.71 6.13
3267 6100 2.492484 TCTTCTAGAGGTTTGTCTCGGC 59.508 50.000 1.31 0.00 38.71 5.54
3268 6101 4.011023 TCTCTTCTAGAGGTTTGTCTCGG 58.989 47.826 1.31 0.00 42.54 4.63
3269 6102 5.048643 TGTTCTCTTCTAGAGGTTTGTCTCG 60.049 44.000 1.31 0.00 42.54 4.04
3270 6103 6.153756 GTGTTCTCTTCTAGAGGTTTGTCTC 58.846 44.000 1.31 0.00 42.54 3.36
3271 6104 5.011227 GGTGTTCTCTTCTAGAGGTTTGTCT 59.989 44.000 1.31 0.00 42.54 3.41
3272 6105 5.221461 TGGTGTTCTCTTCTAGAGGTTTGTC 60.221 44.000 1.31 0.00 42.54 3.18
3273 6106 4.654262 TGGTGTTCTCTTCTAGAGGTTTGT 59.346 41.667 1.31 0.00 42.54 2.83
3274 6107 5.215252 TGGTGTTCTCTTCTAGAGGTTTG 57.785 43.478 1.31 0.00 42.54 2.93
3275 6108 5.888982 TTGGTGTTCTCTTCTAGAGGTTT 57.111 39.130 1.31 0.00 42.54 3.27
3276 6109 5.221742 CCTTTGGTGTTCTCTTCTAGAGGTT 60.222 44.000 1.31 0.00 42.54 3.50
3277 6110 4.284746 CCTTTGGTGTTCTCTTCTAGAGGT 59.715 45.833 1.31 0.00 42.54 3.85
3278 6111 4.284746 ACCTTTGGTGTTCTCTTCTAGAGG 59.715 45.833 4.03 0.00 37.47 3.69
3279 6112 5.476091 ACCTTTGGTGTTCTCTTCTAGAG 57.524 43.478 0.00 0.00 37.92 2.43
3293 6126 5.353111 CAAAAATAAACGGACACCTTTGGT 58.647 37.500 0.00 0.00 35.62 3.67
3294 6127 4.210328 GCAAAAATAAACGGACACCTTTGG 59.790 41.667 0.00 0.00 0.00 3.28
3295 6128 4.085312 CGCAAAAATAAACGGACACCTTTG 60.085 41.667 0.00 0.00 0.00 2.77
3296 6129 4.045783 CGCAAAAATAAACGGACACCTTT 58.954 39.130 0.00 0.00 0.00 3.11
3297 6130 3.067040 ACGCAAAAATAAACGGACACCTT 59.933 39.130 0.00 0.00 0.00 3.50
3298 6131 2.619646 ACGCAAAAATAAACGGACACCT 59.380 40.909 0.00 0.00 0.00 4.00
3299 6132 2.722116 CACGCAAAAATAAACGGACACC 59.278 45.455 0.00 0.00 0.00 4.16
3300 6133 2.722116 CCACGCAAAAATAAACGGACAC 59.278 45.455 0.00 0.00 0.00 3.67
3301 6134 2.287668 CCCACGCAAAAATAAACGGACA 60.288 45.455 0.00 0.00 0.00 4.02
3302 6135 2.321263 CCCACGCAAAAATAAACGGAC 58.679 47.619 0.00 0.00 0.00 4.79
3303 6136 1.336056 GCCCACGCAAAAATAAACGGA 60.336 47.619 0.00 0.00 34.03 4.69
3304 6137 1.064582 GCCCACGCAAAAATAAACGG 58.935 50.000 0.00 0.00 34.03 4.44
3305 6138 0.705639 CGCCCACGCAAAAATAAACG 59.294 50.000 0.00 0.00 34.03 3.60
3318 6151 3.127533 GACACCATCAGCGCCCAC 61.128 66.667 2.29 0.00 0.00 4.61
3319 6152 4.408821 GGACACCATCAGCGCCCA 62.409 66.667 2.29 0.00 0.00 5.36
3320 6153 3.704231 ATGGACACCATCAGCGCCC 62.704 63.158 2.29 0.00 40.74 6.13
3321 6154 2.124570 ATGGACACCATCAGCGCC 60.125 61.111 2.29 0.00 40.74 6.53
3322 6155 1.450134 TCATGGACACCATCAGCGC 60.450 57.895 0.00 0.00 43.15 5.92
3323 6156 1.091771 GGTCATGGACACCATCAGCG 61.092 60.000 0.00 0.00 43.15 5.18
3324 6157 1.091771 CGGTCATGGACACCATCAGC 61.092 60.000 0.00 0.00 43.15 4.26
3325 6158 0.250234 ACGGTCATGGACACCATCAG 59.750 55.000 0.00 0.00 43.15 2.90
3326 6159 0.690192 AACGGTCATGGACACCATCA 59.310 50.000 0.00 0.00 43.15 3.07
3327 6160 1.086696 CAACGGTCATGGACACCATC 58.913 55.000 0.00 0.00 43.15 3.51
3328 6161 0.960364 GCAACGGTCATGGACACCAT 60.960 55.000 3.23 0.00 46.37 3.55
3329 6162 1.599518 GCAACGGTCATGGACACCA 60.600 57.895 3.23 0.00 38.19 4.17
3330 6163 2.332654 GGCAACGGTCATGGACACC 61.333 63.158 0.00 0.00 33.68 4.16
3331 6164 1.599518 TGGCAACGGTCATGGACAC 60.600 57.895 0.00 0.00 42.51 3.67
3332 6165 1.599518 GTGGCAACGGTCATGGACA 60.600 57.895 0.00 0.00 42.51 4.02
3333 6166 0.960364 ATGTGGCAACGGTCATGGAC 60.960 55.000 0.00 0.00 42.51 4.02
3334 6167 0.251121 AATGTGGCAACGGTCATGGA 60.251 50.000 0.00 0.00 42.51 3.41
3335 6168 0.602562 AAATGTGGCAACGGTCATGG 59.397 50.000 0.00 0.00 42.51 3.66
3336 6169 2.437200 AAAATGTGGCAACGGTCATG 57.563 45.000 0.00 0.00 42.51 3.07
3375 6208 9.825109 TGTTTGTTATAAATCTGATGTCGGATA 57.175 29.630 4.84 0.00 40.88 2.59
3376 6209 8.731275 TGTTTGTTATAAATCTGATGTCGGAT 57.269 30.769 0.00 0.00 43.43 4.18
3377 6210 8.611757 CATGTTTGTTATAAATCTGATGTCGGA 58.388 33.333 0.00 0.00 35.43 4.55
3378 6211 8.397906 ACATGTTTGTTATAAATCTGATGTCGG 58.602 33.333 0.00 0.00 29.55 4.79
3379 6212 9.213819 CACATGTTTGTTATAAATCTGATGTCG 57.786 33.333 0.00 0.00 32.34 4.35
3381 6214 9.844790 CACACATGTTTGTTATAAATCTGATGT 57.155 29.630 3.74 0.00 32.34 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.