Multiple sequence alignment - TraesCS4A01G254200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G254200 chr4A 100.000 6325 0 0 1 6325 566521605 566527929 0.000000e+00 11681.0
1 TraesCS4A01G254200 chr4D 96.644 3755 87 17 994 4734 36285297 36281568 0.000000e+00 6200.0
2 TraesCS4A01G254200 chr4D 94.389 1604 67 10 4726 6325 36281515 36279931 0.000000e+00 2442.0
3 TraesCS4A01G254200 chr4D 86.101 554 42 11 376 896 36286101 36285550 1.190000e-156 564.0
4 TraesCS4A01G254200 chr4B 94.199 3741 142 27 1017 4734 52263574 52259886 0.000000e+00 5637.0
5 TraesCS4A01G254200 chr4B 94.554 1616 55 15 4726 6325 52259834 52258236 0.000000e+00 2466.0
6 TraesCS4A01G254200 chr4B 91.066 347 20 7 674 1010 52264111 52263766 5.780000e-125 459.0
7 TraesCS4A01G254200 chr1B 83.066 437 46 11 372 781 498068710 498068275 7.740000e-99 372.0
8 TraesCS4A01G254200 chr1B 81.890 127 21 2 3665 3789 174088933 174088807 8.670000e-19 106.0
9 TraesCS4A01G254200 chr1D 82.838 437 46 10 372 780 373123679 373123244 1.300000e-96 364.0
10 TraesCS4A01G254200 chr7D 82.648 438 46 7 369 780 1327084 1327517 1.680000e-95 361.0
11 TraesCS4A01G254200 chr1A 81.093 439 54 10 369 781 472576358 472575923 2.200000e-84 324.0
12 TraesCS4A01G254200 chr6B 79.814 431 50 21 369 771 624134033 624133612 4.830000e-71 279.0
13 TraesCS4A01G254200 chrUn 78.082 438 52 18 369 779 285885286 285885706 2.950000e-58 237.0
14 TraesCS4A01G254200 chr2B 79.688 192 33 5 591 780 557356523 557356710 3.980000e-27 134.0
15 TraesCS4A01G254200 chr6A 80.420 143 28 0 369 511 559025626 559025484 6.700000e-20 110.0
16 TraesCS4A01G254200 chr5D 85.149 101 12 3 3692 3789 165661544 165661644 4.030000e-17 100.0
17 TraesCS4A01G254200 chr3B 86.667 75 9 1 215 289 408282201 408282128 1.460000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G254200 chr4A 566521605 566527929 6324 False 11681.000000 11681 100.000 1 6325 1 chr4A.!!$F1 6324
1 TraesCS4A01G254200 chr4D 36279931 36286101 6170 True 3068.666667 6200 92.378 376 6325 3 chr4D.!!$R1 5949
2 TraesCS4A01G254200 chr4B 52258236 52264111 5875 True 2854.000000 5637 93.273 674 6325 3 chr4B.!!$R1 5651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 449 0.250727 GTCTAACCAGGTGGCAGCAA 60.251 55.000 20.04 0.0 39.32 3.91 F
462 464 0.610232 CAGCAACCCTTCTCCCCAAG 60.610 60.000 0.00 0.0 0.00 3.61 F
1612 1987 0.684479 CGAGGTGAGGGATGAGTGGA 60.684 60.000 0.00 0.0 0.00 4.02 F
2448 2832 0.249868 TGCGGAACTTCTGTCCACAG 60.250 55.000 0.00 0.0 45.08 3.66 F
3607 4002 2.659428 AGGATTGCAATGTAGCCCTTC 58.341 47.619 18.59 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1541 1916 0.179045 CAAGTAATGCCTCCCCTCGG 60.179 60.000 0.00 0.00 0.00 4.63 R
2429 2813 0.249868 CTGTGGACAGAAGTTCCGCA 60.250 55.000 0.04 4.65 46.59 5.69 R
2500 2884 1.213926 AGATTGCCTGGATTCTGGGAC 59.786 52.381 0.00 0.00 32.52 4.46 R
4263 4662 1.412710 TGGGATGCACCGAGAAGATAC 59.587 52.381 0.00 0.00 40.11 2.24 R
5342 5812 0.185901 TTTTCAGGCTGAGGTTGGCT 59.814 50.000 17.91 0.00 41.11 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.443045 CGGCCCATTTGCTTCGCT 61.443 61.111 0.00 0.00 0.00 4.93
18 19 2.973082 GGCCCATTTGCTTCGCTT 59.027 55.556 0.00 0.00 0.00 4.68
19 20 1.653094 CGGCCCATTTGCTTCGCTTA 61.653 55.000 0.00 0.00 0.00 3.09
20 21 0.530288 GGCCCATTTGCTTCGCTTAA 59.470 50.000 0.00 0.00 0.00 1.85
21 22 1.629013 GCCCATTTGCTTCGCTTAAC 58.371 50.000 0.00 0.00 0.00 2.01
22 23 1.202348 GCCCATTTGCTTCGCTTAACT 59.798 47.619 0.00 0.00 0.00 2.24
23 24 2.352715 GCCCATTTGCTTCGCTTAACTT 60.353 45.455 0.00 0.00 0.00 2.66
24 25 3.501950 CCCATTTGCTTCGCTTAACTTC 58.498 45.455 0.00 0.00 0.00 3.01
25 26 3.191371 CCCATTTGCTTCGCTTAACTTCT 59.809 43.478 0.00 0.00 0.00 2.85
26 27 4.321230 CCCATTTGCTTCGCTTAACTTCTT 60.321 41.667 0.00 0.00 0.00 2.52
27 28 5.222631 CCATTTGCTTCGCTTAACTTCTTT 58.777 37.500 0.00 0.00 0.00 2.52
28 29 5.691754 CCATTTGCTTCGCTTAACTTCTTTT 59.308 36.000 0.00 0.00 0.00 2.27
29 30 6.200854 CCATTTGCTTCGCTTAACTTCTTTTT 59.799 34.615 0.00 0.00 0.00 1.94
30 31 7.381139 CCATTTGCTTCGCTTAACTTCTTTTTA 59.619 33.333 0.00 0.00 0.00 1.52
31 32 8.751335 CATTTGCTTCGCTTAACTTCTTTTTAA 58.249 29.630 0.00 0.00 0.00 1.52
32 33 8.865590 TTTGCTTCGCTTAACTTCTTTTTAAT 57.134 26.923 0.00 0.00 0.00 1.40
33 34 9.953697 TTTGCTTCGCTTAACTTCTTTTTAATA 57.046 25.926 0.00 0.00 0.00 0.98
34 35 8.944212 TGCTTCGCTTAACTTCTTTTTAATAC 57.056 30.769 0.00 0.00 0.00 1.89
35 36 8.019094 TGCTTCGCTTAACTTCTTTTTAATACC 58.981 33.333 0.00 0.00 0.00 2.73
36 37 7.215755 GCTTCGCTTAACTTCTTTTTAATACCG 59.784 37.037 0.00 0.00 0.00 4.02
37 38 7.656707 TCGCTTAACTTCTTTTTAATACCGT 57.343 32.000 0.00 0.00 0.00 4.83
38 39 8.086851 TCGCTTAACTTCTTTTTAATACCGTT 57.913 30.769 0.00 0.00 0.00 4.44
39 40 8.011106 TCGCTTAACTTCTTTTTAATACCGTTG 58.989 33.333 0.00 0.00 0.00 4.10
40 41 8.011106 CGCTTAACTTCTTTTTAATACCGTTGA 58.989 33.333 0.00 0.00 0.00 3.18
41 42 9.110617 GCTTAACTTCTTTTTAATACCGTTGAC 57.889 33.333 0.00 0.00 0.00 3.18
42 43 9.309796 CTTAACTTCTTTTTAATACCGTTGACG 57.690 33.333 0.00 0.00 39.44 4.35
43 44 7.481275 AACTTCTTTTTAATACCGTTGACGA 57.519 32.000 4.91 0.00 43.02 4.20
44 45 7.481275 ACTTCTTTTTAATACCGTTGACGAA 57.519 32.000 4.91 0.00 43.02 3.85
45 46 7.347448 ACTTCTTTTTAATACCGTTGACGAAC 58.653 34.615 4.91 0.00 43.02 3.95
46 47 6.226988 TCTTTTTAATACCGTTGACGAACC 57.773 37.500 4.91 0.00 43.02 3.62
47 48 4.644044 TTTTAATACCGTTGACGAACCG 57.356 40.909 4.91 0.00 43.02 4.44
48 49 3.567576 TTAATACCGTTGACGAACCGA 57.432 42.857 4.91 0.00 43.02 4.69
49 50 2.660189 AATACCGTTGACGAACCGAT 57.340 45.000 4.91 0.00 43.02 4.18
50 51 3.781079 AATACCGTTGACGAACCGATA 57.219 42.857 4.91 0.00 43.02 2.92
51 52 3.781079 ATACCGTTGACGAACCGATAA 57.219 42.857 4.91 0.00 43.02 1.75
52 53 2.660189 ACCGTTGACGAACCGATAAT 57.340 45.000 4.91 0.00 43.02 1.28
53 54 2.264813 ACCGTTGACGAACCGATAATG 58.735 47.619 4.91 0.00 43.02 1.90
54 55 2.264813 CCGTTGACGAACCGATAATGT 58.735 47.619 4.91 0.00 43.02 2.71
55 56 2.669434 CCGTTGACGAACCGATAATGTT 59.331 45.455 4.91 0.00 43.02 2.71
56 57 3.123959 CCGTTGACGAACCGATAATGTTT 59.876 43.478 4.91 0.00 43.02 2.83
57 58 4.377635 CCGTTGACGAACCGATAATGTTTT 60.378 41.667 4.91 0.00 43.02 2.43
58 59 5.163972 CCGTTGACGAACCGATAATGTTTTA 60.164 40.000 4.91 0.00 43.02 1.52
59 60 5.949787 CGTTGACGAACCGATAATGTTTTAG 59.050 40.000 0.00 0.00 43.02 1.85
60 61 5.459110 TGACGAACCGATAATGTTTTAGC 57.541 39.130 0.00 0.00 0.00 3.09
61 62 4.330620 TGACGAACCGATAATGTTTTAGCC 59.669 41.667 0.00 0.00 0.00 3.93
62 63 3.624410 ACGAACCGATAATGTTTTAGCCC 59.376 43.478 0.00 0.00 0.00 5.19
63 64 3.302870 CGAACCGATAATGTTTTAGCCCG 60.303 47.826 0.00 0.00 0.00 6.13
64 65 3.271055 ACCGATAATGTTTTAGCCCGT 57.729 42.857 0.00 0.00 0.00 5.28
65 66 3.613030 ACCGATAATGTTTTAGCCCGTT 58.387 40.909 0.00 0.00 0.00 4.44
66 67 3.375922 ACCGATAATGTTTTAGCCCGTTG 59.624 43.478 0.00 0.00 0.00 4.10
67 68 3.242936 CCGATAATGTTTTAGCCCGTTGG 60.243 47.826 0.00 0.00 0.00 3.77
77 78 3.781307 CCCGTTGGCCTCCATCGA 61.781 66.667 15.48 0.00 46.01 3.59
78 79 2.267642 CCGTTGGCCTCCATCGAA 59.732 61.111 15.48 0.00 46.01 3.71
79 80 1.376683 CCGTTGGCCTCCATCGAAA 60.377 57.895 15.48 0.00 46.01 3.46
80 81 1.644786 CCGTTGGCCTCCATCGAAAC 61.645 60.000 15.48 0.00 46.01 2.78
81 82 0.673644 CGTTGGCCTCCATCGAAACT 60.674 55.000 3.32 0.00 46.01 2.66
82 83 1.534729 GTTGGCCTCCATCGAAACTT 58.465 50.000 3.32 0.00 31.53 2.66
83 84 1.886542 GTTGGCCTCCATCGAAACTTT 59.113 47.619 3.32 0.00 31.53 2.66
84 85 2.286365 TGGCCTCCATCGAAACTTTT 57.714 45.000 3.32 0.00 0.00 2.27
85 86 1.885887 TGGCCTCCATCGAAACTTTTG 59.114 47.619 3.32 0.00 0.00 2.44
86 87 1.202348 GGCCTCCATCGAAACTTTTGG 59.798 52.381 0.00 0.00 0.00 3.28
87 88 1.886542 GCCTCCATCGAAACTTTTGGT 59.113 47.619 0.00 0.00 0.00 3.67
88 89 2.095212 GCCTCCATCGAAACTTTTGGTC 60.095 50.000 0.00 0.00 0.00 4.02
89 90 3.412386 CCTCCATCGAAACTTTTGGTCT 58.588 45.455 0.00 0.00 0.00 3.85
90 91 3.821033 CCTCCATCGAAACTTTTGGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
91 92 4.278419 CCTCCATCGAAACTTTTGGTCTTT 59.722 41.667 0.00 0.00 0.00 2.52
92 93 5.221244 CCTCCATCGAAACTTTTGGTCTTTT 60.221 40.000 0.00 0.00 0.00 2.27
93 94 6.016610 CCTCCATCGAAACTTTTGGTCTTTTA 60.017 38.462 0.00 0.00 0.00 1.52
94 95 7.336161 TCCATCGAAACTTTTGGTCTTTTAA 57.664 32.000 0.00 0.00 0.00 1.52
95 96 7.422399 TCCATCGAAACTTTTGGTCTTTTAAG 58.578 34.615 0.00 0.00 0.00 1.85
96 97 7.283580 TCCATCGAAACTTTTGGTCTTTTAAGA 59.716 33.333 0.00 0.00 0.00 2.10
97 98 7.918562 CCATCGAAACTTTTGGTCTTTTAAGAA 59.081 33.333 0.00 0.00 36.68 2.52
98 99 9.296400 CATCGAAACTTTTGGTCTTTTAAGAAA 57.704 29.630 0.00 0.00 36.68 2.52
99 100 8.905103 TCGAAACTTTTGGTCTTTTAAGAAAG 57.095 30.769 0.00 0.00 42.92 2.62
100 101 7.486870 TCGAAACTTTTGGTCTTTTAAGAAAGC 59.513 33.333 0.00 0.00 41.63 3.51
101 102 7.513041 CGAAACTTTTGGTCTTTTAAGAAAGCG 60.513 37.037 0.00 0.00 41.63 4.68
102 103 6.445357 ACTTTTGGTCTTTTAAGAAAGCGA 57.555 33.333 0.00 0.00 41.63 4.93
103 104 6.263344 ACTTTTGGTCTTTTAAGAAAGCGAC 58.737 36.000 0.00 0.00 41.63 5.19
104 105 4.461992 TTGGTCTTTTAAGAAAGCGACG 57.538 40.909 0.00 0.00 41.63 5.12
105 106 3.719924 TGGTCTTTTAAGAAAGCGACGA 58.280 40.909 0.00 0.00 41.63 4.20
106 107 4.312443 TGGTCTTTTAAGAAAGCGACGAT 58.688 39.130 0.00 0.00 41.63 3.73
107 108 5.472148 TGGTCTTTTAAGAAAGCGACGATA 58.528 37.500 0.00 0.00 41.63 2.92
108 109 5.575606 TGGTCTTTTAAGAAAGCGACGATAG 59.424 40.000 0.00 0.00 41.63 2.08
109 110 5.482342 GTCTTTTAAGAAAGCGACGATAGC 58.518 41.667 0.00 0.00 41.63 2.97
110 111 5.061808 GTCTTTTAAGAAAGCGACGATAGCA 59.938 40.000 0.00 0.00 41.63 3.49
111 112 5.810587 TCTTTTAAGAAAGCGACGATAGCAT 59.189 36.000 0.00 0.00 41.63 3.79
112 113 6.976349 TCTTTTAAGAAAGCGACGATAGCATA 59.024 34.615 0.00 0.00 41.63 3.14
113 114 7.652105 TCTTTTAAGAAAGCGACGATAGCATAT 59.348 33.333 0.00 0.00 41.63 1.78
114 115 8.806177 TTTTAAGAAAGCGACGATAGCATATA 57.194 30.769 0.00 0.00 42.67 0.86
115 116 8.981724 TTTAAGAAAGCGACGATAGCATATAT 57.018 30.769 0.00 0.00 42.67 0.86
117 118 9.717892 TTAAGAAAGCGACGATAGCATATATAG 57.282 33.333 0.00 0.00 42.67 1.31
118 119 7.323049 AGAAAGCGACGATAGCATATATAGT 57.677 36.000 0.00 0.00 42.67 2.12
119 120 8.434733 AGAAAGCGACGATAGCATATATAGTA 57.565 34.615 0.00 0.00 42.67 1.82
120 121 8.890718 AGAAAGCGACGATAGCATATATAGTAA 58.109 33.333 0.00 0.00 42.67 2.24
121 122 8.838452 AAAGCGACGATAGCATATATAGTAAC 57.162 34.615 0.00 0.00 42.67 2.50
122 123 6.957150 AGCGACGATAGCATATATAGTAACC 58.043 40.000 0.00 0.00 42.67 2.85
123 124 6.541278 AGCGACGATAGCATATATAGTAACCA 59.459 38.462 0.00 0.00 42.67 3.67
124 125 7.228906 AGCGACGATAGCATATATAGTAACCAT 59.771 37.037 0.00 0.00 42.67 3.55
125 126 7.323895 GCGACGATAGCATATATAGTAACCATG 59.676 40.741 0.00 0.00 42.67 3.66
126 127 8.557029 CGACGATAGCATATATAGTAACCATGA 58.443 37.037 0.00 0.00 42.67 3.07
174 175 8.700439 AAAAATTACAGCAGGGTAACTAAGAA 57.300 30.769 0.00 0.00 36.17 2.52
175 176 8.879427 AAAATTACAGCAGGGTAACTAAGAAT 57.121 30.769 0.00 0.00 36.17 2.40
176 177 9.969001 AAAATTACAGCAGGGTAACTAAGAATA 57.031 29.630 0.00 0.00 36.17 1.75
177 178 9.969001 AAATTACAGCAGGGTAACTAAGAATAA 57.031 29.630 0.00 0.00 36.17 1.40
178 179 9.969001 AATTACAGCAGGGTAACTAAGAATAAA 57.031 29.630 0.00 0.00 36.17 1.40
179 180 8.782339 TTACAGCAGGGTAACTAAGAATAAAC 57.218 34.615 0.00 0.00 0.00 2.01
180 181 5.873164 ACAGCAGGGTAACTAAGAATAAACG 59.127 40.000 0.00 0.00 0.00 3.60
181 182 5.873164 CAGCAGGGTAACTAAGAATAAACGT 59.127 40.000 0.00 0.00 0.00 3.99
182 183 5.873164 AGCAGGGTAACTAAGAATAAACGTG 59.127 40.000 0.00 0.00 0.00 4.49
183 184 5.870978 GCAGGGTAACTAAGAATAAACGTGA 59.129 40.000 0.00 0.00 0.00 4.35
184 185 6.369615 GCAGGGTAACTAAGAATAAACGTGAA 59.630 38.462 0.00 0.00 0.00 3.18
185 186 7.622880 GCAGGGTAACTAAGAATAAACGTGAAC 60.623 40.741 0.00 0.00 0.00 3.18
186 187 7.601508 CAGGGTAACTAAGAATAAACGTGAACT 59.398 37.037 0.00 0.00 0.00 3.01
187 188 8.806146 AGGGTAACTAAGAATAAACGTGAACTA 58.194 33.333 0.00 0.00 0.00 2.24
188 189 9.591792 GGGTAACTAAGAATAAACGTGAACTAT 57.408 33.333 0.00 0.00 0.00 2.12
204 205 6.245115 TGAACTATTCACTGTGCATCAAAG 57.755 37.500 2.12 0.00 34.08 2.77
205 206 5.764686 TGAACTATTCACTGTGCATCAAAGT 59.235 36.000 2.12 0.00 31.17 2.66
206 207 6.262944 TGAACTATTCACTGTGCATCAAAGTT 59.737 34.615 2.12 4.98 28.04 2.66
207 208 6.639632 ACTATTCACTGTGCATCAAAGTTT 57.360 33.333 2.12 0.00 28.04 2.66
208 209 6.441274 ACTATTCACTGTGCATCAAAGTTTG 58.559 36.000 9.44 9.44 28.04 2.93
209 210 4.717233 TTCACTGTGCATCAAAGTTTGT 57.283 36.364 15.08 0.61 28.04 2.83
210 211 4.291540 TCACTGTGCATCAAAGTTTGTC 57.708 40.909 15.08 6.86 28.04 3.18
211 212 3.693578 TCACTGTGCATCAAAGTTTGTCA 59.306 39.130 15.08 9.12 28.04 3.58
212 213 4.338964 TCACTGTGCATCAAAGTTTGTCAT 59.661 37.500 15.08 0.00 28.04 3.06
213 214 4.678287 CACTGTGCATCAAAGTTTGTCATC 59.322 41.667 15.08 4.66 28.04 2.92
214 215 4.338964 ACTGTGCATCAAAGTTTGTCATCA 59.661 37.500 15.08 6.93 25.24 3.07
215 216 4.862350 TGTGCATCAAAGTTTGTCATCAG 58.138 39.130 15.08 2.38 0.00 2.90
216 217 4.338964 TGTGCATCAAAGTTTGTCATCAGT 59.661 37.500 15.08 0.00 0.00 3.41
217 218 4.678287 GTGCATCAAAGTTTGTCATCAGTG 59.322 41.667 15.08 5.84 0.00 3.66
218 219 4.579753 TGCATCAAAGTTTGTCATCAGTGA 59.420 37.500 15.08 0.00 0.00 3.41
219 220 5.242171 TGCATCAAAGTTTGTCATCAGTGAT 59.758 36.000 15.08 0.00 36.60 3.06
220 221 6.430616 TGCATCAAAGTTTGTCATCAGTGATA 59.569 34.615 15.08 0.00 36.60 2.15
221 222 7.040548 TGCATCAAAGTTTGTCATCAGTGATAA 60.041 33.333 15.08 0.00 36.60 1.75
222 223 7.972277 GCATCAAAGTTTGTCATCAGTGATAAT 59.028 33.333 15.08 0.00 35.72 1.28
226 227 9.265938 CAAAGTTTGTCATCAGTGATAATAACG 57.734 33.333 5.03 0.00 35.72 3.18
227 228 8.547967 AAGTTTGTCATCAGTGATAATAACGT 57.452 30.769 5.03 4.21 35.72 3.99
228 229 7.963981 AGTTTGTCATCAGTGATAATAACGTG 58.036 34.615 5.03 0.00 35.72 4.49
229 230 5.966636 TGTCATCAGTGATAATAACGTGC 57.033 39.130 5.03 0.00 36.60 5.34
230 231 5.415221 TGTCATCAGTGATAATAACGTGCA 58.585 37.500 5.03 0.00 36.60 4.57
231 232 5.872070 TGTCATCAGTGATAATAACGTGCAA 59.128 36.000 5.03 0.00 36.60 4.08
232 233 6.538381 TGTCATCAGTGATAATAACGTGCAAT 59.462 34.615 5.03 0.00 36.60 3.56
233 234 7.065683 TGTCATCAGTGATAATAACGTGCAATT 59.934 33.333 5.03 0.00 36.60 2.32
234 235 8.547894 GTCATCAGTGATAATAACGTGCAATTA 58.452 33.333 5.03 0.00 36.60 1.40
235 236 8.764287 TCATCAGTGATAATAACGTGCAATTAG 58.236 33.333 5.03 0.00 0.00 1.73
236 237 8.764287 CATCAGTGATAATAACGTGCAATTAGA 58.236 33.333 5.03 0.00 0.00 2.10
237 238 8.126871 TCAGTGATAATAACGTGCAATTAGAC 57.873 34.615 0.00 0.00 0.00 2.59
238 239 7.762159 TCAGTGATAATAACGTGCAATTAGACA 59.238 33.333 0.00 0.00 0.00 3.41
239 240 8.387354 CAGTGATAATAACGTGCAATTAGACAA 58.613 33.333 0.00 0.00 0.00 3.18
240 241 8.388103 AGTGATAATAACGTGCAATTAGACAAC 58.612 33.333 0.00 0.00 0.00 3.32
241 242 8.172484 GTGATAATAACGTGCAATTAGACAACA 58.828 33.333 0.00 0.00 0.00 3.33
242 243 8.888716 TGATAATAACGTGCAATTAGACAACAT 58.111 29.630 0.00 0.00 0.00 2.71
248 249 7.603963 ACGTGCAATTAGACAACATATTACA 57.396 32.000 0.00 0.00 0.00 2.41
249 250 8.208718 ACGTGCAATTAGACAACATATTACAT 57.791 30.769 0.00 0.00 0.00 2.29
250 251 9.320352 ACGTGCAATTAGACAACATATTACATA 57.680 29.630 0.00 0.00 0.00 2.29
251 252 9.580916 CGTGCAATTAGACAACATATTACATAC 57.419 33.333 0.00 0.00 0.00 2.39
258 259 9.976511 TTAGACAACATATTACATACACTAGGC 57.023 33.333 0.00 0.00 0.00 3.93
259 260 8.018537 AGACAACATATTACATACACTAGGCA 57.981 34.615 0.00 0.00 0.00 4.75
260 261 8.651389 AGACAACATATTACATACACTAGGCAT 58.349 33.333 0.00 0.00 0.00 4.40
261 262 9.923143 GACAACATATTACATACACTAGGCATA 57.077 33.333 0.00 0.00 0.00 3.14
269 270 6.903883 ACATACACTAGGCATAAAAGTTCG 57.096 37.500 0.00 0.00 0.00 3.95
270 271 6.403878 ACATACACTAGGCATAAAAGTTCGT 58.596 36.000 0.00 0.00 0.00 3.85
271 272 6.534079 ACATACACTAGGCATAAAAGTTCGTC 59.466 38.462 0.00 0.00 0.00 4.20
272 273 3.924686 ACACTAGGCATAAAAGTTCGTCG 59.075 43.478 0.00 0.00 0.00 5.12
273 274 2.928116 ACTAGGCATAAAAGTTCGTCGC 59.072 45.455 0.00 0.00 0.00 5.19
274 275 1.084289 AGGCATAAAAGTTCGTCGCC 58.916 50.000 0.00 0.00 38.36 5.54
275 276 0.800012 GGCATAAAAGTTCGTCGCCA 59.200 50.000 0.00 0.00 37.98 5.69
276 277 1.198178 GGCATAAAAGTTCGTCGCCAA 59.802 47.619 0.00 0.00 37.98 4.52
277 278 2.159435 GGCATAAAAGTTCGTCGCCAAT 60.159 45.455 0.00 0.00 37.98 3.16
278 279 2.845967 GCATAAAAGTTCGTCGCCAATG 59.154 45.455 0.00 0.00 0.00 2.82
279 280 2.604969 TAAAAGTTCGTCGCCAATGC 57.395 45.000 0.00 0.00 0.00 3.56
280 281 0.665835 AAAAGTTCGTCGCCAATGCA 59.334 45.000 0.00 0.00 37.32 3.96
281 282 0.665835 AAAGTTCGTCGCCAATGCAA 59.334 45.000 0.00 0.00 37.32 4.08
282 283 0.665835 AAGTTCGTCGCCAATGCAAA 59.334 45.000 0.00 0.00 37.32 3.68
283 284 0.881118 AGTTCGTCGCCAATGCAAAT 59.119 45.000 0.00 0.00 37.32 2.32
284 285 2.080693 AGTTCGTCGCCAATGCAAATA 58.919 42.857 0.00 0.00 37.32 1.40
285 286 2.159572 AGTTCGTCGCCAATGCAAATAC 60.160 45.455 0.00 0.00 37.32 1.89
286 287 1.443802 TCGTCGCCAATGCAAATACA 58.556 45.000 0.00 0.00 37.32 2.29
287 288 1.807142 TCGTCGCCAATGCAAATACAA 59.193 42.857 0.00 0.00 37.32 2.41
288 289 1.910819 CGTCGCCAATGCAAATACAAC 59.089 47.619 0.00 0.00 37.32 3.32
289 290 1.910819 GTCGCCAATGCAAATACAACG 59.089 47.619 0.00 0.00 37.32 4.10
290 291 0.639756 CGCCAATGCAAATACAACGC 59.360 50.000 0.00 0.00 37.32 4.84
291 292 0.639756 GCCAATGCAAATACAACGCG 59.360 50.000 3.53 3.53 37.47 6.01
292 293 0.639756 CCAATGCAAATACAACGCGC 59.360 50.000 5.73 0.00 0.00 6.86
293 294 1.334994 CAATGCAAATACAACGCGCA 58.665 45.000 5.73 0.00 36.95 6.09
294 295 1.718178 CAATGCAAATACAACGCGCAA 59.282 42.857 5.73 0.00 35.98 4.85
295 296 2.057503 ATGCAAATACAACGCGCAAA 57.942 40.000 5.73 0.00 35.98 3.68
296 297 1.124462 TGCAAATACAACGCGCAAAC 58.876 45.000 5.73 0.00 0.00 2.93
297 298 1.124462 GCAAATACAACGCGCAAACA 58.876 45.000 5.73 0.00 0.00 2.83
298 299 1.518929 GCAAATACAACGCGCAAACAA 59.481 42.857 5.73 0.00 0.00 2.83
299 300 2.034507 GCAAATACAACGCGCAAACAAA 60.035 40.909 5.73 0.00 0.00 2.83
300 301 3.542291 GCAAATACAACGCGCAAACAAAA 60.542 39.130 5.73 0.00 0.00 2.44
301 302 4.569029 CAAATACAACGCGCAAACAAAAA 58.431 34.783 5.73 0.00 0.00 1.94
325 326 9.819267 AAAAGTATACAGAACTAATAGCACCTC 57.181 33.333 5.50 0.00 0.00 3.85
326 327 8.534954 AAGTATACAGAACTAATAGCACCTCA 57.465 34.615 5.50 0.00 0.00 3.86
327 328 8.534954 AGTATACAGAACTAATAGCACCTCAA 57.465 34.615 5.50 0.00 0.00 3.02
328 329 8.414778 AGTATACAGAACTAATAGCACCTCAAC 58.585 37.037 5.50 0.00 0.00 3.18
329 330 5.483685 ACAGAACTAATAGCACCTCAACA 57.516 39.130 0.00 0.00 0.00 3.33
330 331 5.238583 ACAGAACTAATAGCACCTCAACAC 58.761 41.667 0.00 0.00 0.00 3.32
331 332 5.221641 ACAGAACTAATAGCACCTCAACACA 60.222 40.000 0.00 0.00 0.00 3.72
332 333 5.349817 CAGAACTAATAGCACCTCAACACAG 59.650 44.000 0.00 0.00 0.00 3.66
333 334 4.891992 ACTAATAGCACCTCAACACAGT 57.108 40.909 0.00 0.00 0.00 3.55
334 335 5.228945 ACTAATAGCACCTCAACACAGTT 57.771 39.130 0.00 0.00 0.00 3.16
335 336 5.621193 ACTAATAGCACCTCAACACAGTTT 58.379 37.500 0.00 0.00 0.00 2.66
336 337 6.765403 ACTAATAGCACCTCAACACAGTTTA 58.235 36.000 0.00 0.00 0.00 2.01
337 338 7.221450 ACTAATAGCACCTCAACACAGTTTAA 58.779 34.615 0.00 0.00 0.00 1.52
338 339 6.560253 AATAGCACCTCAACACAGTTTAAG 57.440 37.500 0.00 0.00 0.00 1.85
339 340 4.150897 AGCACCTCAACACAGTTTAAGA 57.849 40.909 0.00 0.00 0.00 2.10
340 341 4.523083 AGCACCTCAACACAGTTTAAGAA 58.477 39.130 0.00 0.00 0.00 2.52
341 342 4.335594 AGCACCTCAACACAGTTTAAGAAC 59.664 41.667 0.00 0.00 35.97 3.01
342 343 4.497507 GCACCTCAACACAGTTTAAGAACC 60.498 45.833 0.00 0.00 36.39 3.62
343 344 3.875134 ACCTCAACACAGTTTAAGAACCG 59.125 43.478 0.00 0.00 36.39 4.44
344 345 4.124238 CCTCAACACAGTTTAAGAACCGA 58.876 43.478 0.00 0.00 36.39 4.69
345 346 4.755123 CCTCAACACAGTTTAAGAACCGAT 59.245 41.667 0.00 0.00 36.39 4.18
346 347 5.929992 CCTCAACACAGTTTAAGAACCGATA 59.070 40.000 0.00 0.00 36.39 2.92
347 348 6.090898 CCTCAACACAGTTTAAGAACCGATAG 59.909 42.308 0.00 0.00 36.39 2.08
348 349 5.407387 TCAACACAGTTTAAGAACCGATAGC 59.593 40.000 0.00 0.00 36.39 2.97
349 350 4.890088 ACACAGTTTAAGAACCGATAGCA 58.110 39.130 0.00 0.00 36.39 3.49
350 351 4.689345 ACACAGTTTAAGAACCGATAGCAC 59.311 41.667 0.00 0.00 36.39 4.40
351 352 4.092968 CACAGTTTAAGAACCGATAGCACC 59.907 45.833 0.00 0.00 36.39 5.01
352 353 4.020485 ACAGTTTAAGAACCGATAGCACCT 60.020 41.667 0.00 0.00 36.39 4.00
353 354 5.186409 ACAGTTTAAGAACCGATAGCACCTA 59.814 40.000 0.00 0.00 36.39 3.08
354 355 6.127140 ACAGTTTAAGAACCGATAGCACCTAT 60.127 38.462 0.00 0.00 36.39 2.57
355 356 7.069085 ACAGTTTAAGAACCGATAGCACCTATA 59.931 37.037 0.00 0.00 36.39 1.31
356 357 7.381678 CAGTTTAAGAACCGATAGCACCTATAC 59.618 40.741 0.00 0.00 36.39 1.47
357 358 6.964807 TTAAGAACCGATAGCACCTATACA 57.035 37.500 0.00 0.00 0.00 2.29
358 359 5.455056 AAGAACCGATAGCACCTATACAG 57.545 43.478 0.00 0.00 0.00 2.74
360 361 3.520691 ACCGATAGCACCTATACAGGA 57.479 47.619 0.00 0.00 45.91 3.86
361 362 3.422796 ACCGATAGCACCTATACAGGAG 58.577 50.000 0.00 0.00 45.91 3.69
362 363 3.181431 ACCGATAGCACCTATACAGGAGT 60.181 47.826 0.00 0.00 45.91 3.85
363 364 3.827302 CCGATAGCACCTATACAGGAGTT 59.173 47.826 0.00 0.00 45.91 3.01
364 365 4.281182 CCGATAGCACCTATACAGGAGTTT 59.719 45.833 0.00 0.00 45.91 2.66
365 366 5.475909 CCGATAGCACCTATACAGGAGTTTA 59.524 44.000 0.00 0.00 45.91 2.01
366 367 6.015688 CCGATAGCACCTATACAGGAGTTTAA 60.016 42.308 0.00 0.00 45.91 1.52
367 368 7.085116 CGATAGCACCTATACAGGAGTTTAAG 58.915 42.308 0.00 0.00 45.91 1.85
368 369 7.040617 CGATAGCACCTATACAGGAGTTTAAGA 60.041 40.741 0.00 0.00 45.91 2.10
369 370 6.869206 AGCACCTATACAGGAGTTTAAGAA 57.131 37.500 0.00 0.00 45.91 2.52
370 371 6.641474 AGCACCTATACAGGAGTTTAAGAAC 58.359 40.000 0.00 0.00 45.91 3.01
371 372 5.816258 GCACCTATACAGGAGTTTAAGAACC 59.184 44.000 0.00 0.00 45.91 3.62
372 373 6.040878 CACCTATACAGGAGTTTAAGAACCG 58.959 44.000 0.00 0.00 45.91 4.44
373 374 5.128335 ACCTATACAGGAGTTTAAGAACCGG 59.872 44.000 0.00 0.00 45.91 5.28
374 375 5.361857 CCTATACAGGAGTTTAAGAACCGGA 59.638 44.000 9.46 0.00 45.91 5.14
388 389 3.121019 CGGAGGGAAGCCTAGTCG 58.879 66.667 0.00 0.00 0.00 4.18
413 414 0.337773 ACTGGAGCAGAGGGAGATCA 59.662 55.000 0.00 0.00 35.18 2.92
419 420 3.308046 GGAGCAGAGGGAGATCAAAGTTT 60.308 47.826 0.00 0.00 0.00 2.66
423 424 4.093556 GCAGAGGGAGATCAAAGTTTTACG 59.906 45.833 0.00 0.00 0.00 3.18
426 427 2.422479 GGGAGATCAAAGTTTTACGGGC 59.578 50.000 0.00 0.00 0.00 6.13
444 445 2.066340 CCAGTCTAACCAGGTGGCA 58.934 57.895 0.00 0.00 39.32 4.92
448 449 0.250727 GTCTAACCAGGTGGCAGCAA 60.251 55.000 20.04 0.00 39.32 3.91
452 454 4.290622 CCAGGTGGCAGCAACCCT 62.291 66.667 16.23 3.30 38.57 4.34
462 464 0.610232 CAGCAACCCTTCTCCCCAAG 60.610 60.000 0.00 0.00 0.00 3.61
468 470 0.771127 CCCTTCTCCCCAAGTGTCAA 59.229 55.000 0.00 0.00 0.00 3.18
529 557 2.202676 GCGACGAGGGAGAAGCAG 60.203 66.667 0.00 0.00 0.00 4.24
539 567 1.449246 GAGAAGCAGCATCGCCACT 60.449 57.895 0.00 0.00 0.00 4.00
609 637 3.151554 AGGGTTTGTCCGTGGATAAAAC 58.848 45.455 15.47 15.47 40.59 2.43
610 638 3.564235 GGTTTGTCCGTGGATAAAACC 57.436 47.619 22.77 22.77 41.70 3.27
630 658 4.906618 ACCGAGAGAAATGCTCCTAAAAA 58.093 39.130 0.00 0.00 45.10 1.94
631 659 5.501156 ACCGAGAGAAATGCTCCTAAAAAT 58.499 37.500 0.00 0.00 45.10 1.82
633 661 5.220931 CCGAGAGAAATGCTCCTAAAAATGG 60.221 44.000 0.00 0.00 45.10 3.16
634 662 5.355350 CGAGAGAAATGCTCCTAAAAATGGT 59.645 40.000 0.00 0.00 45.10 3.55
639 667 7.734942 AGAAATGCTCCTAAAAATGGTTGAAA 58.265 30.769 0.00 0.00 0.00 2.69
696 724 1.847798 TACCCCCAGCTTGTTCGCAT 61.848 55.000 0.00 0.00 0.00 4.73
701 729 1.203052 CCCAGCTTGTTCGCATGAAAT 59.797 47.619 0.00 0.00 35.46 2.17
705 733 3.982701 CAGCTTGTTCGCATGAAATCAAA 59.017 39.130 0.00 0.00 35.46 2.69
726 754 2.113860 TGATTGAGGGGCTTTTCTCG 57.886 50.000 0.00 0.00 33.00 4.04
728 756 2.039746 TGATTGAGGGGCTTTTCTCGAA 59.960 45.455 0.00 0.00 33.00 3.71
733 761 2.680339 GAGGGGCTTTTCTCGAAATGAG 59.320 50.000 8.83 0.00 46.72 2.90
746 774 2.734175 CGAAATGAGATCGAACCGACCA 60.734 50.000 0.00 0.00 42.76 4.02
774 802 2.796483 TGAACTGCCCGGTTCATCGG 62.796 60.000 16.47 0.00 46.91 4.18
793 821 3.493129 TCGGTTTTTCTGTGATGTTCTCG 59.507 43.478 0.00 0.00 0.00 4.04
863 898 1.979469 CAGTCGTAACTCAGCAAGTCG 59.021 52.381 0.00 0.00 37.17 4.18
1047 1422 1.690219 CCTCCCTCAACATCCCCGAG 61.690 65.000 0.00 0.00 0.00 4.63
1408 1783 1.612146 TCCGGGTTCTCCAGCATCA 60.612 57.895 0.00 0.00 34.36 3.07
1541 1916 1.072852 GGCATGAGAGGGAGGATGC 59.927 63.158 0.00 0.00 40.44 3.91
1565 1940 1.141858 GGGGAGGCATTACTTGGAGAG 59.858 57.143 0.00 0.00 0.00 3.20
1612 1987 0.684479 CGAGGTGAGGGATGAGTGGA 60.684 60.000 0.00 0.00 0.00 4.02
1639 2014 1.194781 AAGGGTCAGACATCAGGCGT 61.195 55.000 2.17 0.00 0.00 5.68
1645 2020 2.099405 TCAGACATCAGGCGTATGACA 58.901 47.619 8.78 0.00 30.05 3.58
1721 2096 3.978164 GGTATGGCCTGAGGAGCT 58.022 61.111 0.65 0.00 0.00 4.09
1722 2097 1.751563 GGTATGGCCTGAGGAGCTC 59.248 63.158 0.65 4.71 0.00 4.09
1749 2124 2.459086 GGATGGCCCTGAGCTGGAT 61.459 63.158 0.00 0.00 43.05 3.41
1939 2314 2.832838 TCTTCACCCCTCAGCTATTCA 58.167 47.619 0.00 0.00 0.00 2.57
1940 2315 3.387962 TCTTCACCCCTCAGCTATTCAT 58.612 45.455 0.00 0.00 0.00 2.57
1941 2316 3.782523 TCTTCACCCCTCAGCTATTCATT 59.217 43.478 0.00 0.00 0.00 2.57
2131 2511 4.082026 GCTGATGGAAAGGCTTGTGTTTAT 60.082 41.667 0.00 0.00 0.00 1.40
2132 2512 5.389859 TGATGGAAAGGCTTGTGTTTATG 57.610 39.130 0.00 0.00 0.00 1.90
2133 2513 4.220382 TGATGGAAAGGCTTGTGTTTATGG 59.780 41.667 0.00 0.00 0.00 2.74
2141 2521 4.076394 GGCTTGTGTTTATGGTGGAGTAA 58.924 43.478 0.00 0.00 0.00 2.24
2208 2588 5.947228 TTGCACCTCACTTTTTCTATCAG 57.053 39.130 0.00 0.00 0.00 2.90
2209 2589 3.753272 TGCACCTCACTTTTTCTATCAGC 59.247 43.478 0.00 0.00 0.00 4.26
2219 2603 2.627515 TTCTATCAGCCTGACCATGC 57.372 50.000 0.00 0.00 0.00 4.06
2246 2630 6.900568 TGTGTTTGCTTAACCTTTTCAATG 57.099 33.333 0.82 0.00 35.81 2.82
2261 2645 2.442413 TCAATGCTCTTTTTACCCCCG 58.558 47.619 0.00 0.00 0.00 5.73
2420 2804 6.722328 TGTTCTTCTACATCCTAGACTGAGA 58.278 40.000 0.00 0.00 0.00 3.27
2429 2813 5.366186 ACATCCTAGACTGAGAAAGCATGAT 59.634 40.000 0.00 0.00 0.00 2.45
2448 2832 0.249868 TGCGGAACTTCTGTCCACAG 60.250 55.000 0.00 0.00 45.08 3.66
2488 2872 8.988060 TCTCTCCACCTGATACATAAAACATTA 58.012 33.333 0.00 0.00 0.00 1.90
2553 2937 6.717289 AGTAGTGAAGTTTTATATGTGGCCA 58.283 36.000 0.00 0.00 0.00 5.36
3017 3404 3.068560 GTCTAGGATCTCGACGCTATGT 58.931 50.000 0.00 0.00 0.00 2.29
3041 3428 7.684862 GTCACTGTTGAAGGATAAGGCACTTT 61.685 42.308 0.00 0.00 38.67 2.66
3199 3588 8.445275 AATGTTACAAAAAGGGAAACAAATCC 57.555 30.769 0.00 0.00 38.86 3.01
3209 3598 5.903923 AGGGAAACAAATCCTATCCAAAGT 58.096 37.500 0.00 0.00 39.57 2.66
3282 3671 3.084039 CCCGCAATGGCATATGTTATCT 58.916 45.455 0.00 0.00 41.24 1.98
3425 3817 6.404074 CCAAATCAAGACAGAGTTTATCCAGC 60.404 42.308 0.00 0.00 0.00 4.85
3607 4002 2.659428 AGGATTGCAATGTAGCCCTTC 58.341 47.619 18.59 0.00 0.00 3.46
4149 4548 7.198306 TCTTCAGCTGATATGCAATAATGTG 57.802 36.000 19.04 0.00 34.99 3.21
4263 4662 2.820197 TGGGTAGCTCATATCTAGTGCG 59.180 50.000 0.00 0.00 0.00 5.34
4344 4743 9.844790 AAATTATGTTGTACTGATGATGTGTTG 57.155 29.630 0.00 0.00 0.00 3.33
4994 5464 4.155826 CGCCATAAAGATGACTTTGGAACA 59.844 41.667 0.00 0.00 44.67 3.18
5165 5635 0.977108 AAGAGCAGCTGAGGGAGGAG 60.977 60.000 20.43 0.00 0.00 3.69
5168 5638 3.478274 CAGCTGAGGGAGGAGGGC 61.478 72.222 8.42 0.00 0.00 5.19
5256 5726 4.457496 ATCTCGCTGGGCACACCG 62.457 66.667 0.00 0.00 44.64 4.94
5337 5807 8.449251 TGATACGAAATGATCATCATCCAAAA 57.551 30.769 9.06 0.00 35.76 2.44
5342 5812 7.147863 ACGAAATGATCATCATCCAAAATCCAA 60.148 33.333 9.06 0.00 35.76 3.53
5349 5819 2.566724 TCATCCAAAATCCAAGCCAACC 59.433 45.455 0.00 0.00 0.00 3.77
5368 5838 0.955919 CTCAGCCTGAAAACCGGGAC 60.956 60.000 6.32 0.00 44.44 4.46
5382 5852 0.606944 CGGGACCCGGTCAAAATTGA 60.607 55.000 26.15 0.00 44.15 2.57
5443 5914 1.260544 GAGCAAATTCAGGGCCAACT 58.739 50.000 6.18 0.00 0.00 3.16
5448 5919 3.557686 GCAAATTCAGGGCCAACTTCAAT 60.558 43.478 6.18 0.00 0.00 2.57
5450 5921 2.978156 TTCAGGGCCAACTTCAATCT 57.022 45.000 6.18 0.00 0.00 2.40
5451 5922 2.205022 TCAGGGCCAACTTCAATCTG 57.795 50.000 6.18 0.00 0.00 2.90
5452 5923 1.704628 TCAGGGCCAACTTCAATCTGA 59.295 47.619 6.18 1.18 0.00 3.27
5453 5924 2.108075 TCAGGGCCAACTTCAATCTGAA 59.892 45.455 6.18 0.00 34.79 3.02
5467 5938 8.139989 ACTTCAATCTGAATGAAAACTGGAAAG 58.860 33.333 9.26 0.00 35.59 2.62
5551 6022 4.800582 GCTCCATTTTGGTTTTAAGCTGCT 60.801 41.667 0.00 0.00 39.03 4.24
5642 6118 9.674068 TTGGTAATCTTGTGTACATAAGCATTA 57.326 29.630 23.36 21.52 33.48 1.90
5697 6173 4.439426 CGTTGGTTGATTGTTCAAAGGACA 60.439 41.667 0.00 0.00 43.29 4.02
5706 6186 5.508200 TTGTTCAAAGGACAGCGTAAAAT 57.492 34.783 0.00 0.00 0.00 1.82
5707 6187 6.621316 TTGTTCAAAGGACAGCGTAAAATA 57.379 33.333 0.00 0.00 0.00 1.40
5710 6190 8.325421 TGTTCAAAGGACAGCGTAAAATAATA 57.675 30.769 0.00 0.00 0.00 0.98
5792 6273 6.747125 TGACAACTGTATTTGCAATGACAAT 58.253 32.000 13.22 3.06 0.00 2.71
5793 6274 6.641723 TGACAACTGTATTTGCAATGACAATG 59.358 34.615 13.22 15.31 0.00 2.82
5794 6275 6.747125 ACAACTGTATTTGCAATGACAATGA 58.253 32.000 21.29 1.11 0.00 2.57
5795 6276 6.642131 ACAACTGTATTTGCAATGACAATGAC 59.358 34.615 21.29 6.95 0.00 3.06
5796 6277 6.330004 ACTGTATTTGCAATGACAATGACA 57.670 33.333 13.22 0.00 0.00 3.58
5797 6278 6.747125 ACTGTATTTGCAATGACAATGACAA 58.253 32.000 13.22 0.00 29.36 3.18
5854 6339 2.093764 CCTTCTGAGACACCTCACATCC 60.094 54.545 0.00 0.00 44.01 3.51
5855 6340 2.309136 TCTGAGACACCTCACATCCA 57.691 50.000 0.00 0.00 44.01 3.41
5910 6395 1.358152 ACTGGCCTGGCTAACAGTTA 58.642 50.000 19.68 0.00 46.06 2.24
5915 6400 2.704065 GGCCTGGCTAACAGTTATCCTA 59.296 50.000 19.68 1.41 46.06 2.94
5916 6401 3.135895 GGCCTGGCTAACAGTTATCCTAA 59.864 47.826 19.68 0.00 46.06 2.69
5917 6402 4.202472 GGCCTGGCTAACAGTTATCCTAAT 60.202 45.833 19.68 0.00 46.06 1.73
5918 6403 4.998033 GCCTGGCTAACAGTTATCCTAATC 59.002 45.833 12.43 0.00 46.06 1.75
6011 6500 3.219928 GCCTCTCCTGATCGGCGA 61.220 66.667 13.87 13.87 32.22 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 8.225777 ACGGTATTAAAAAGAAGTTAAGCGAAG 58.774 33.333 0.00 0.00 0.00 3.79
12 13 8.086851 ACGGTATTAAAAAGAAGTTAAGCGAA 57.913 30.769 0.00 0.00 0.00 4.70
13 14 7.656707 ACGGTATTAAAAAGAAGTTAAGCGA 57.343 32.000 0.00 0.00 0.00 4.93
14 15 8.011106 TCAACGGTATTAAAAAGAAGTTAAGCG 58.989 33.333 0.00 0.00 0.00 4.68
15 16 9.110617 GTCAACGGTATTAAAAAGAAGTTAAGC 57.889 33.333 0.00 0.00 0.00 3.09
16 17 9.309796 CGTCAACGGTATTAAAAAGAAGTTAAG 57.690 33.333 0.00 0.00 35.37 1.85
17 18 9.039870 TCGTCAACGGTATTAAAAAGAAGTTAA 57.960 29.630 2.31 0.00 40.29 2.01
18 19 8.586570 TCGTCAACGGTATTAAAAAGAAGTTA 57.413 30.769 2.31 0.00 40.29 2.24
19 20 7.481275 TCGTCAACGGTATTAAAAAGAAGTT 57.519 32.000 2.31 0.00 40.29 2.66
20 21 7.347448 GTTCGTCAACGGTATTAAAAAGAAGT 58.653 34.615 2.31 0.00 40.29 3.01
21 22 6.793680 GGTTCGTCAACGGTATTAAAAAGAAG 59.206 38.462 2.31 0.00 40.29 2.85
22 23 6.563753 CGGTTCGTCAACGGTATTAAAAAGAA 60.564 38.462 2.31 0.00 40.29 2.52
23 24 5.107530 CGGTTCGTCAACGGTATTAAAAAGA 60.108 40.000 2.31 0.00 40.29 2.52
24 25 5.074791 CGGTTCGTCAACGGTATTAAAAAG 58.925 41.667 2.31 0.00 40.29 2.27
25 26 4.747108 TCGGTTCGTCAACGGTATTAAAAA 59.253 37.500 2.31 0.00 40.29 1.94
26 27 4.302455 TCGGTTCGTCAACGGTATTAAAA 58.698 39.130 2.31 0.00 40.29 1.52
27 28 3.906998 TCGGTTCGTCAACGGTATTAAA 58.093 40.909 2.31 0.00 40.29 1.52
28 29 3.567576 TCGGTTCGTCAACGGTATTAA 57.432 42.857 2.31 0.00 40.29 1.40
29 30 3.781079 ATCGGTTCGTCAACGGTATTA 57.219 42.857 2.31 0.00 40.29 0.98
30 31 2.660189 ATCGGTTCGTCAACGGTATT 57.340 45.000 2.31 0.00 40.29 1.89
31 32 3.781079 TTATCGGTTCGTCAACGGTAT 57.219 42.857 2.31 0.00 40.29 2.73
32 33 3.119531 ACATTATCGGTTCGTCAACGGTA 60.120 43.478 2.31 0.00 40.29 4.02
33 34 2.264813 CATTATCGGTTCGTCAACGGT 58.735 47.619 2.31 0.00 40.29 4.83
34 35 2.264813 ACATTATCGGTTCGTCAACGG 58.735 47.619 2.31 0.00 40.29 4.44
35 36 3.984018 AACATTATCGGTTCGTCAACG 57.016 42.857 0.00 0.00 41.45 4.10
36 37 5.731263 GCTAAAACATTATCGGTTCGTCAAC 59.269 40.000 0.00 0.00 0.00 3.18
37 38 5.163834 GGCTAAAACATTATCGGTTCGTCAA 60.164 40.000 0.00 0.00 0.00 3.18
38 39 4.330620 GGCTAAAACATTATCGGTTCGTCA 59.669 41.667 0.00 0.00 0.00 4.35
39 40 4.260497 GGGCTAAAACATTATCGGTTCGTC 60.260 45.833 0.00 0.00 0.00 4.20
40 41 3.624410 GGGCTAAAACATTATCGGTTCGT 59.376 43.478 0.00 0.00 0.00 3.85
41 42 3.302870 CGGGCTAAAACATTATCGGTTCG 60.303 47.826 0.00 0.00 0.00 3.95
42 43 3.624410 ACGGGCTAAAACATTATCGGTTC 59.376 43.478 0.00 0.00 0.00 3.62
43 44 3.613030 ACGGGCTAAAACATTATCGGTT 58.387 40.909 0.00 0.00 0.00 4.44
44 45 3.271055 ACGGGCTAAAACATTATCGGT 57.729 42.857 0.00 0.00 0.00 4.69
45 46 3.242936 CCAACGGGCTAAAACATTATCGG 60.243 47.826 0.00 0.00 0.00 4.18
46 47 3.947626 CCAACGGGCTAAAACATTATCG 58.052 45.455 0.00 0.00 0.00 2.92
63 64 1.534729 AAGTTTCGATGGAGGCCAAC 58.465 50.000 5.01 0.00 36.95 3.77
64 65 2.286365 AAAGTTTCGATGGAGGCCAA 57.714 45.000 5.01 0.00 36.95 4.52
65 66 1.885887 CAAAAGTTTCGATGGAGGCCA 59.114 47.619 5.01 0.00 38.19 5.36
66 67 1.202348 CCAAAAGTTTCGATGGAGGCC 59.798 52.381 0.00 0.00 34.82 5.19
67 68 1.886542 ACCAAAAGTTTCGATGGAGGC 59.113 47.619 11.05 0.00 36.75 4.70
68 69 3.412386 AGACCAAAAGTTTCGATGGAGG 58.588 45.455 11.05 0.00 36.75 4.30
69 70 5.438761 AAAGACCAAAAGTTTCGATGGAG 57.561 39.130 11.05 0.00 36.75 3.86
70 71 5.845391 AAAAGACCAAAAGTTTCGATGGA 57.155 34.783 11.05 0.00 36.75 3.41
71 72 7.422399 TCTTAAAAGACCAAAAGTTTCGATGG 58.578 34.615 3.67 3.67 38.91 3.51
72 73 8.850454 TTCTTAAAAGACCAAAAGTTTCGATG 57.150 30.769 0.00 0.00 34.13 3.84
73 74 9.516314 CTTTCTTAAAAGACCAAAAGTTTCGAT 57.484 29.630 0.00 0.00 43.90 3.59
74 75 7.486870 GCTTTCTTAAAAGACCAAAAGTTTCGA 59.513 33.333 2.21 0.00 43.90 3.71
75 76 7.513041 CGCTTTCTTAAAAGACCAAAAGTTTCG 60.513 37.037 2.21 0.00 43.90 3.46
76 77 7.486870 TCGCTTTCTTAAAAGACCAAAAGTTTC 59.513 33.333 2.21 0.00 43.90 2.78
77 78 7.274904 GTCGCTTTCTTAAAAGACCAAAAGTTT 59.725 33.333 2.21 0.00 43.90 2.66
78 79 6.750501 GTCGCTTTCTTAAAAGACCAAAAGTT 59.249 34.615 2.21 0.00 43.90 2.66
79 80 6.263344 GTCGCTTTCTTAAAAGACCAAAAGT 58.737 36.000 2.21 0.00 43.90 2.66
80 81 5.395486 CGTCGCTTTCTTAAAAGACCAAAAG 59.605 40.000 2.21 0.00 43.90 2.27
81 82 5.064962 TCGTCGCTTTCTTAAAAGACCAAAA 59.935 36.000 2.21 0.00 43.90 2.44
82 83 4.571580 TCGTCGCTTTCTTAAAAGACCAAA 59.428 37.500 2.21 0.00 43.90 3.28
83 84 4.121317 TCGTCGCTTTCTTAAAAGACCAA 58.879 39.130 2.21 0.00 43.90 3.67
84 85 3.719924 TCGTCGCTTTCTTAAAAGACCA 58.280 40.909 2.21 0.00 43.90 4.02
85 86 4.923264 ATCGTCGCTTTCTTAAAAGACC 57.077 40.909 2.21 0.00 43.90 3.85
86 87 5.061808 TGCTATCGTCGCTTTCTTAAAAGAC 59.938 40.000 2.21 0.21 43.90 3.01
87 88 5.165676 TGCTATCGTCGCTTTCTTAAAAGA 58.834 37.500 2.21 0.00 43.90 2.52
88 89 5.450376 TGCTATCGTCGCTTTCTTAAAAG 57.550 39.130 0.00 0.00 43.99 2.27
89 90 7.709269 ATATGCTATCGTCGCTTTCTTAAAA 57.291 32.000 0.00 0.00 0.00 1.52
90 91 8.981724 ATATATGCTATCGTCGCTTTCTTAAA 57.018 30.769 0.00 0.00 0.00 1.52
91 92 9.717892 CTATATATGCTATCGTCGCTTTCTTAA 57.282 33.333 0.00 0.00 0.00 1.85
92 93 8.890718 ACTATATATGCTATCGTCGCTTTCTTA 58.109 33.333 0.00 0.00 0.00 2.10
93 94 7.763356 ACTATATATGCTATCGTCGCTTTCTT 58.237 34.615 0.00 0.00 0.00 2.52
94 95 7.323049 ACTATATATGCTATCGTCGCTTTCT 57.677 36.000 0.00 0.00 0.00 2.52
95 96 8.945930 GTTACTATATATGCTATCGTCGCTTTC 58.054 37.037 0.00 0.00 0.00 2.62
96 97 7.914346 GGTTACTATATATGCTATCGTCGCTTT 59.086 37.037 0.00 0.00 0.00 3.51
97 98 7.066645 TGGTTACTATATATGCTATCGTCGCTT 59.933 37.037 0.00 0.00 0.00 4.68
98 99 6.541278 TGGTTACTATATATGCTATCGTCGCT 59.459 38.462 0.00 0.00 0.00 4.93
99 100 6.722301 TGGTTACTATATATGCTATCGTCGC 58.278 40.000 0.00 0.00 0.00 5.19
100 101 8.557029 TCATGGTTACTATATATGCTATCGTCG 58.443 37.037 0.00 0.00 0.00 5.12
149 150 8.700439 TTCTTAGTTACCCTGCTGTAATTTTT 57.300 30.769 0.00 0.00 33.58 1.94
150 151 8.879427 ATTCTTAGTTACCCTGCTGTAATTTT 57.121 30.769 0.00 0.00 33.58 1.82
151 152 9.969001 TTATTCTTAGTTACCCTGCTGTAATTT 57.031 29.630 0.00 0.00 33.58 1.82
152 153 9.969001 TTTATTCTTAGTTACCCTGCTGTAATT 57.031 29.630 0.00 0.00 33.58 1.40
153 154 9.392259 GTTTATTCTTAGTTACCCTGCTGTAAT 57.608 33.333 0.00 0.00 33.58 1.89
154 155 7.546667 CGTTTATTCTTAGTTACCCTGCTGTAA 59.453 37.037 0.00 0.00 0.00 2.41
155 156 7.037438 CGTTTATTCTTAGTTACCCTGCTGTA 58.963 38.462 0.00 0.00 0.00 2.74
156 157 5.873164 CGTTTATTCTTAGTTACCCTGCTGT 59.127 40.000 0.00 0.00 0.00 4.40
157 158 5.873164 ACGTTTATTCTTAGTTACCCTGCTG 59.127 40.000 0.00 0.00 0.00 4.41
158 159 5.873164 CACGTTTATTCTTAGTTACCCTGCT 59.127 40.000 0.00 0.00 0.00 4.24
159 160 5.870978 TCACGTTTATTCTTAGTTACCCTGC 59.129 40.000 0.00 0.00 0.00 4.85
160 161 7.601508 AGTTCACGTTTATTCTTAGTTACCCTG 59.398 37.037 0.00 0.00 0.00 4.45
161 162 7.674120 AGTTCACGTTTATTCTTAGTTACCCT 58.326 34.615 0.00 0.00 0.00 4.34
162 163 7.895975 AGTTCACGTTTATTCTTAGTTACCC 57.104 36.000 0.00 0.00 0.00 3.69
181 182 5.764686 ACTTTGATGCACAGTGAATAGTTCA 59.235 36.000 4.15 0.00 37.33 3.18
182 183 6.246420 ACTTTGATGCACAGTGAATAGTTC 57.754 37.500 4.15 0.00 0.00 3.01
183 184 6.639632 AACTTTGATGCACAGTGAATAGTT 57.360 33.333 4.15 3.52 0.00 2.24
184 185 6.039717 ACAAACTTTGATGCACAGTGAATAGT 59.960 34.615 4.15 0.00 0.00 2.12
185 186 6.441274 ACAAACTTTGATGCACAGTGAATAG 58.559 36.000 4.15 0.00 0.00 1.73
186 187 6.039159 TGACAAACTTTGATGCACAGTGAATA 59.961 34.615 4.15 0.00 0.00 1.75
187 188 5.163530 TGACAAACTTTGATGCACAGTGAAT 60.164 36.000 4.15 0.00 0.00 2.57
188 189 4.157472 TGACAAACTTTGATGCACAGTGAA 59.843 37.500 4.15 0.00 0.00 3.18
189 190 3.693578 TGACAAACTTTGATGCACAGTGA 59.306 39.130 4.15 0.00 0.00 3.41
190 191 4.031418 TGACAAACTTTGATGCACAGTG 57.969 40.909 8.55 0.00 0.00 3.66
191 192 4.338964 TGATGACAAACTTTGATGCACAGT 59.661 37.500 8.55 0.00 0.00 3.55
192 193 4.862350 TGATGACAAACTTTGATGCACAG 58.138 39.130 8.55 0.00 0.00 3.66
193 194 4.338964 ACTGATGACAAACTTTGATGCACA 59.661 37.500 8.55 0.00 0.00 4.57
194 195 4.678287 CACTGATGACAAACTTTGATGCAC 59.322 41.667 8.55 0.00 0.00 4.57
195 196 4.579753 TCACTGATGACAAACTTTGATGCA 59.420 37.500 8.55 0.00 0.00 3.96
196 197 5.112220 TCACTGATGACAAACTTTGATGC 57.888 39.130 8.55 0.00 0.00 3.91
200 201 9.265938 CGTTATTATCACTGATGACAAACTTTG 57.734 33.333 1.42 0.00 37.79 2.77
201 202 8.999431 ACGTTATTATCACTGATGACAAACTTT 58.001 29.630 1.42 0.00 37.79 2.66
202 203 8.443160 CACGTTATTATCACTGATGACAAACTT 58.557 33.333 1.42 0.00 37.79 2.66
203 204 7.413000 GCACGTTATTATCACTGATGACAAACT 60.413 37.037 1.42 0.00 37.79 2.66
204 205 6.682863 GCACGTTATTATCACTGATGACAAAC 59.317 38.462 1.42 2.28 37.79 2.93
205 206 6.370166 TGCACGTTATTATCACTGATGACAAA 59.630 34.615 1.42 0.00 37.79 2.83
206 207 5.872070 TGCACGTTATTATCACTGATGACAA 59.128 36.000 1.42 0.00 37.79 3.18
207 208 5.415221 TGCACGTTATTATCACTGATGACA 58.585 37.500 1.42 0.00 37.79 3.58
208 209 5.966636 TGCACGTTATTATCACTGATGAC 57.033 39.130 1.42 0.00 37.79 3.06
209 210 7.552458 AATTGCACGTTATTATCACTGATGA 57.448 32.000 1.42 0.00 39.83 2.92
210 211 8.764287 TCTAATTGCACGTTATTATCACTGATG 58.236 33.333 1.42 0.00 0.00 3.07
211 212 8.765219 GTCTAATTGCACGTTATTATCACTGAT 58.235 33.333 0.00 0.00 0.00 2.90
212 213 7.762159 TGTCTAATTGCACGTTATTATCACTGA 59.238 33.333 0.00 0.00 0.00 3.41
213 214 7.905126 TGTCTAATTGCACGTTATTATCACTG 58.095 34.615 0.00 0.00 0.00 3.66
214 215 8.388103 GTTGTCTAATTGCACGTTATTATCACT 58.612 33.333 0.00 0.00 0.00 3.41
215 216 8.172484 TGTTGTCTAATTGCACGTTATTATCAC 58.828 33.333 0.00 0.00 0.00 3.06
216 217 8.257830 TGTTGTCTAATTGCACGTTATTATCA 57.742 30.769 0.00 0.00 0.00 2.15
222 223 9.152595 TGTAATATGTTGTCTAATTGCACGTTA 57.847 29.630 0.00 0.00 0.00 3.18
223 224 8.035165 TGTAATATGTTGTCTAATTGCACGTT 57.965 30.769 0.00 0.00 0.00 3.99
224 225 7.603963 TGTAATATGTTGTCTAATTGCACGT 57.396 32.000 0.00 0.00 0.00 4.49
225 226 9.580916 GTATGTAATATGTTGTCTAATTGCACG 57.419 33.333 0.00 0.00 28.87 5.34
232 233 9.976511 GCCTAGTGTATGTAATATGTTGTCTAA 57.023 33.333 0.00 0.00 0.00 2.10
233 234 9.138596 TGCCTAGTGTATGTAATATGTTGTCTA 57.861 33.333 0.00 0.00 0.00 2.59
234 235 8.018537 TGCCTAGTGTATGTAATATGTTGTCT 57.981 34.615 0.00 0.00 0.00 3.41
235 236 8.833231 ATGCCTAGTGTATGTAATATGTTGTC 57.167 34.615 0.00 0.00 0.00 3.18
243 244 9.042008 CGAACTTTTATGCCTAGTGTATGTAAT 57.958 33.333 0.00 0.00 0.00 1.89
244 245 8.036575 ACGAACTTTTATGCCTAGTGTATGTAA 58.963 33.333 0.00 0.00 0.00 2.41
245 246 7.549839 ACGAACTTTTATGCCTAGTGTATGTA 58.450 34.615 0.00 0.00 0.00 2.29
246 247 6.403878 ACGAACTTTTATGCCTAGTGTATGT 58.596 36.000 0.00 0.00 0.00 2.29
247 248 6.291637 CGACGAACTTTTATGCCTAGTGTATG 60.292 42.308 0.00 0.00 0.00 2.39
248 249 5.747197 CGACGAACTTTTATGCCTAGTGTAT 59.253 40.000 0.00 0.00 0.00 2.29
249 250 5.097529 CGACGAACTTTTATGCCTAGTGTA 58.902 41.667 0.00 0.00 0.00 2.90
250 251 3.924686 CGACGAACTTTTATGCCTAGTGT 59.075 43.478 0.00 0.00 0.00 3.55
251 252 3.241995 GCGACGAACTTTTATGCCTAGTG 60.242 47.826 0.00 0.00 0.00 2.74
252 253 2.928116 GCGACGAACTTTTATGCCTAGT 59.072 45.455 0.00 0.00 0.00 2.57
253 254 2.284417 GGCGACGAACTTTTATGCCTAG 59.716 50.000 0.00 0.00 38.00 3.02
254 255 2.273557 GGCGACGAACTTTTATGCCTA 58.726 47.619 0.00 0.00 38.00 3.93
255 256 1.084289 GGCGACGAACTTTTATGCCT 58.916 50.000 0.00 0.00 38.00 4.75
256 257 0.800012 TGGCGACGAACTTTTATGCC 59.200 50.000 0.00 0.00 41.33 4.40
257 258 2.604969 TTGGCGACGAACTTTTATGC 57.395 45.000 0.00 0.00 0.00 3.14
258 259 2.845967 GCATTGGCGACGAACTTTTATG 59.154 45.455 0.00 0.00 0.00 1.90
259 260 2.486203 TGCATTGGCGACGAACTTTTAT 59.514 40.909 0.00 0.00 45.35 1.40
260 261 1.874231 TGCATTGGCGACGAACTTTTA 59.126 42.857 0.00 0.00 45.35 1.52
261 262 0.665835 TGCATTGGCGACGAACTTTT 59.334 45.000 0.00 0.00 45.35 2.27
262 263 0.665835 TTGCATTGGCGACGAACTTT 59.334 45.000 0.00 0.00 45.35 2.66
263 264 0.665835 TTTGCATTGGCGACGAACTT 59.334 45.000 0.00 0.00 45.35 2.66
264 265 0.881118 ATTTGCATTGGCGACGAACT 59.119 45.000 0.00 0.00 45.35 3.01
265 266 2.173964 GTATTTGCATTGGCGACGAAC 58.826 47.619 0.00 0.00 45.35 3.95
266 267 1.807142 TGTATTTGCATTGGCGACGAA 59.193 42.857 0.00 0.00 45.35 3.85
267 268 1.443802 TGTATTTGCATTGGCGACGA 58.556 45.000 0.00 0.00 45.35 4.20
268 269 1.910819 GTTGTATTTGCATTGGCGACG 59.089 47.619 0.00 0.00 45.35 5.12
269 270 1.910819 CGTTGTATTTGCATTGGCGAC 59.089 47.619 0.00 0.00 45.35 5.19
270 271 1.730772 GCGTTGTATTTGCATTGGCGA 60.731 47.619 0.00 0.00 45.35 5.54
271 272 0.639756 GCGTTGTATTTGCATTGGCG 59.360 50.000 0.00 0.00 45.35 5.69
272 273 0.639756 CGCGTTGTATTTGCATTGGC 59.360 50.000 0.00 0.00 41.68 4.52
273 274 0.639756 GCGCGTTGTATTTGCATTGG 59.360 50.000 8.43 0.00 0.00 3.16
274 275 1.334994 TGCGCGTTGTATTTGCATTG 58.665 45.000 8.43 0.00 0.00 2.82
275 276 2.057503 TTGCGCGTTGTATTTGCATT 57.942 40.000 8.43 0.00 35.20 3.56
276 277 1.718711 GTTTGCGCGTTGTATTTGCAT 59.281 42.857 8.43 0.00 35.20 3.96
277 278 1.124462 GTTTGCGCGTTGTATTTGCA 58.876 45.000 8.43 0.00 0.00 4.08
278 279 1.124462 TGTTTGCGCGTTGTATTTGC 58.876 45.000 8.43 0.00 0.00 3.68
279 280 3.825498 TTTGTTTGCGCGTTGTATTTG 57.175 38.095 8.43 0.00 0.00 2.32
280 281 4.842139 TTTTTGTTTGCGCGTTGTATTT 57.158 31.818 8.43 0.00 0.00 1.40
299 300 9.819267 GAGGTGCTATTAGTTCTGTATACTTTT 57.181 33.333 4.17 0.00 0.00 2.27
300 301 8.978472 TGAGGTGCTATTAGTTCTGTATACTTT 58.022 33.333 4.17 0.00 0.00 2.66
301 302 8.534954 TGAGGTGCTATTAGTTCTGTATACTT 57.465 34.615 4.17 0.00 0.00 2.24
302 303 8.414778 GTTGAGGTGCTATTAGTTCTGTATACT 58.585 37.037 4.17 0.00 0.00 2.12
303 304 8.195436 TGTTGAGGTGCTATTAGTTCTGTATAC 58.805 37.037 0.00 0.00 0.00 1.47
304 305 8.195436 GTGTTGAGGTGCTATTAGTTCTGTATA 58.805 37.037 0.00 0.00 0.00 1.47
305 306 7.042335 GTGTTGAGGTGCTATTAGTTCTGTAT 58.958 38.462 0.00 0.00 0.00 2.29
306 307 6.014925 TGTGTTGAGGTGCTATTAGTTCTGTA 60.015 38.462 0.00 0.00 0.00 2.74
307 308 5.221641 TGTGTTGAGGTGCTATTAGTTCTGT 60.222 40.000 0.00 0.00 0.00 3.41
308 309 5.237815 TGTGTTGAGGTGCTATTAGTTCTG 58.762 41.667 0.00 0.00 0.00 3.02
309 310 5.012148 ACTGTGTTGAGGTGCTATTAGTTCT 59.988 40.000 0.00 0.00 0.00 3.01
310 311 5.238583 ACTGTGTTGAGGTGCTATTAGTTC 58.761 41.667 0.00 0.00 0.00 3.01
311 312 5.228945 ACTGTGTTGAGGTGCTATTAGTT 57.771 39.130 0.00 0.00 0.00 2.24
312 313 4.891992 ACTGTGTTGAGGTGCTATTAGT 57.108 40.909 0.00 0.00 0.00 2.24
313 314 7.602644 TCTTAAACTGTGTTGAGGTGCTATTAG 59.397 37.037 0.00 0.00 0.00 1.73
314 315 7.446769 TCTTAAACTGTGTTGAGGTGCTATTA 58.553 34.615 0.00 0.00 0.00 0.98
315 316 6.296026 TCTTAAACTGTGTTGAGGTGCTATT 58.704 36.000 0.00 0.00 0.00 1.73
316 317 5.865085 TCTTAAACTGTGTTGAGGTGCTAT 58.135 37.500 0.00 0.00 0.00 2.97
317 318 5.284861 TCTTAAACTGTGTTGAGGTGCTA 57.715 39.130 0.00 0.00 0.00 3.49
318 319 4.150897 TCTTAAACTGTGTTGAGGTGCT 57.849 40.909 0.00 0.00 0.00 4.40
319 320 4.497507 GGTTCTTAAACTGTGTTGAGGTGC 60.498 45.833 0.00 0.00 35.61 5.01
320 321 4.260620 CGGTTCTTAAACTGTGTTGAGGTG 60.261 45.833 0.00 0.00 37.06 4.00
321 322 3.875134 CGGTTCTTAAACTGTGTTGAGGT 59.125 43.478 0.00 0.00 37.06 3.85
322 323 4.124238 TCGGTTCTTAAACTGTGTTGAGG 58.876 43.478 0.00 0.00 41.66 3.86
323 324 5.924475 ATCGGTTCTTAAACTGTGTTGAG 57.076 39.130 0.00 0.00 41.66 3.02
324 325 5.407387 GCTATCGGTTCTTAAACTGTGTTGA 59.593 40.000 0.00 0.00 41.66 3.18
325 326 5.178623 TGCTATCGGTTCTTAAACTGTGTTG 59.821 40.000 0.00 0.00 41.66 3.33
326 327 5.178809 GTGCTATCGGTTCTTAAACTGTGTT 59.821 40.000 0.00 0.00 41.66 3.32
327 328 4.689345 GTGCTATCGGTTCTTAAACTGTGT 59.311 41.667 0.00 0.00 41.66 3.72
328 329 4.092968 GGTGCTATCGGTTCTTAAACTGTG 59.907 45.833 0.00 0.00 41.66 3.66
329 330 4.020485 AGGTGCTATCGGTTCTTAAACTGT 60.020 41.667 0.00 0.00 41.66 3.55
330 331 4.504858 AGGTGCTATCGGTTCTTAAACTG 58.495 43.478 0.00 0.00 42.21 3.16
331 332 4.820894 AGGTGCTATCGGTTCTTAAACT 57.179 40.909 0.00 0.00 35.61 2.66
332 333 7.205297 TGTATAGGTGCTATCGGTTCTTAAAC 58.795 38.462 0.00 0.00 34.46 2.01
333 334 7.350744 TGTATAGGTGCTATCGGTTCTTAAA 57.649 36.000 0.00 0.00 0.00 1.52
334 335 6.015688 CCTGTATAGGTGCTATCGGTTCTTAA 60.016 42.308 0.00 0.00 39.39 1.85
335 336 5.475909 CCTGTATAGGTGCTATCGGTTCTTA 59.524 44.000 0.00 0.00 39.39 2.10
336 337 4.281182 CCTGTATAGGTGCTATCGGTTCTT 59.719 45.833 0.00 0.00 39.39 2.52
337 338 3.827302 CCTGTATAGGTGCTATCGGTTCT 59.173 47.826 0.00 0.00 39.39 3.01
338 339 3.825014 TCCTGTATAGGTGCTATCGGTTC 59.175 47.826 5.31 0.00 44.88 3.62
339 340 3.827302 CTCCTGTATAGGTGCTATCGGTT 59.173 47.826 5.31 0.00 44.88 4.44
340 341 3.181431 ACTCCTGTATAGGTGCTATCGGT 60.181 47.826 5.31 0.00 44.88 4.69
341 342 3.422796 ACTCCTGTATAGGTGCTATCGG 58.577 50.000 5.31 0.00 44.88 4.18
342 343 5.455056 AAACTCCTGTATAGGTGCTATCG 57.545 43.478 5.31 0.00 44.88 2.92
343 344 8.179509 TCTTAAACTCCTGTATAGGTGCTATC 57.820 38.462 5.31 0.00 44.88 2.08
344 345 8.422566 GTTCTTAAACTCCTGTATAGGTGCTAT 58.577 37.037 5.31 0.00 44.88 2.97
345 346 7.147776 GGTTCTTAAACTCCTGTATAGGTGCTA 60.148 40.741 5.31 0.00 40.47 3.49
346 347 6.351966 GGTTCTTAAACTCCTGTATAGGTGCT 60.352 42.308 5.31 0.00 40.47 4.40
347 348 5.816258 GGTTCTTAAACTCCTGTATAGGTGC 59.184 44.000 5.31 0.00 40.47 5.01
348 349 6.040878 CGGTTCTTAAACTCCTGTATAGGTG 58.959 44.000 5.31 5.73 42.11 4.00
349 350 5.128335 CCGGTTCTTAAACTCCTGTATAGGT 59.872 44.000 5.31 0.00 37.43 3.08
350 351 5.361857 TCCGGTTCTTAAACTCCTGTATAGG 59.638 44.000 0.00 0.00 37.47 2.57
351 352 6.461110 TCCGGTTCTTAAACTCCTGTATAG 57.539 41.667 0.00 0.00 35.61 1.31
352 353 5.361857 CCTCCGGTTCTTAAACTCCTGTATA 59.638 44.000 0.00 0.00 35.61 1.47
353 354 4.161754 CCTCCGGTTCTTAAACTCCTGTAT 59.838 45.833 0.00 0.00 35.61 2.29
354 355 3.512724 CCTCCGGTTCTTAAACTCCTGTA 59.487 47.826 0.00 0.00 35.61 2.74
355 356 2.302157 CCTCCGGTTCTTAAACTCCTGT 59.698 50.000 0.00 0.00 35.61 4.00
356 357 2.354805 CCCTCCGGTTCTTAAACTCCTG 60.355 54.545 0.00 0.00 35.61 3.86
357 358 1.907255 CCCTCCGGTTCTTAAACTCCT 59.093 52.381 0.00 0.00 35.61 3.69
358 359 1.904537 TCCCTCCGGTTCTTAAACTCC 59.095 52.381 0.00 0.00 35.61 3.85
359 360 3.597255 CTTCCCTCCGGTTCTTAAACTC 58.403 50.000 0.00 0.00 35.61 3.01
360 361 2.290134 GCTTCCCTCCGGTTCTTAAACT 60.290 50.000 0.00 0.00 35.61 2.66
361 362 2.082231 GCTTCCCTCCGGTTCTTAAAC 58.918 52.381 0.00 0.00 34.46 2.01
362 363 1.003928 GGCTTCCCTCCGGTTCTTAAA 59.996 52.381 0.00 0.00 0.00 1.52
363 364 0.616891 GGCTTCCCTCCGGTTCTTAA 59.383 55.000 0.00 0.00 0.00 1.85
364 365 0.252558 AGGCTTCCCTCCGGTTCTTA 60.253 55.000 0.00 0.00 36.46 2.10
365 366 0.252558 TAGGCTTCCCTCCGGTTCTT 60.253 55.000 0.00 0.00 41.75 2.52
366 367 0.688087 CTAGGCTTCCCTCCGGTTCT 60.688 60.000 0.00 0.00 41.75 3.01
367 368 0.976590 ACTAGGCTTCCCTCCGGTTC 60.977 60.000 0.00 0.00 41.75 3.62
368 369 0.976590 GACTAGGCTTCCCTCCGGTT 60.977 60.000 0.00 0.00 41.75 4.44
369 370 1.381463 GACTAGGCTTCCCTCCGGT 60.381 63.158 0.00 0.00 41.75 5.28
370 371 2.491022 CGACTAGGCTTCCCTCCGG 61.491 68.421 0.00 0.00 41.75 5.14
371 372 0.824182 ATCGACTAGGCTTCCCTCCG 60.824 60.000 0.00 0.00 41.75 4.63
372 373 1.415200 AATCGACTAGGCTTCCCTCC 58.585 55.000 0.00 0.00 41.75 4.30
373 374 2.431057 TCAAATCGACTAGGCTTCCCTC 59.569 50.000 0.00 0.00 41.75 4.30
374 375 2.168728 GTCAAATCGACTAGGCTTCCCT 59.831 50.000 0.00 0.00 41.81 4.20
388 389 1.556911 TCCCTCTGCTCCAGTCAAATC 59.443 52.381 0.00 0.00 32.61 2.17
397 398 1.836802 ACTTTGATCTCCCTCTGCTCC 59.163 52.381 0.00 0.00 0.00 4.70
413 414 2.651382 AGACTGGCCCGTAAAACTTT 57.349 45.000 0.00 0.00 0.00 2.66
419 420 0.899720 CTGGTTAGACTGGCCCGTAA 59.100 55.000 0.00 0.00 0.00 3.18
423 424 1.299976 CACCTGGTTAGACTGGCCC 59.700 63.158 0.00 0.00 33.19 5.80
426 427 0.036010 CTGCCACCTGGTTAGACTGG 60.036 60.000 0.00 0.00 37.57 4.00
444 445 1.068352 ACTTGGGGAGAAGGGTTGCT 61.068 55.000 0.00 0.00 0.00 3.91
448 449 0.401395 TGACACTTGGGGAGAAGGGT 60.401 55.000 0.00 0.00 42.49 4.34
452 454 3.519510 CCTCTATTGACACTTGGGGAGAA 59.480 47.826 0.00 0.00 0.00 2.87
462 464 2.028112 TCTGCACCACCTCTATTGACAC 60.028 50.000 0.00 0.00 0.00 3.67
468 470 0.471617 GCCATCTGCACCACCTCTAT 59.528 55.000 0.00 0.00 40.77 1.98
539 567 1.607178 CCTTGCTTGGTGCCATGGA 60.607 57.895 18.40 0.00 42.00 3.41
585 613 4.847990 TTATCCACGGACAAACCCTATT 57.152 40.909 0.00 0.00 34.64 1.73
586 614 4.847990 TTTATCCACGGACAAACCCTAT 57.152 40.909 0.00 0.00 34.64 2.57
589 617 2.229543 GGTTTTATCCACGGACAAACCC 59.770 50.000 21.43 8.56 40.94 4.11
609 637 5.220931 CCATTTTTAGGAGCATTTCTCTCGG 60.221 44.000 0.00 0.00 41.60 4.63
610 638 5.355350 ACCATTTTTAGGAGCATTTCTCTCG 59.645 40.000 0.00 0.00 41.60 4.04
633 661 5.196341 CCCTCTTTTTGTAGGGTTTCAAC 57.804 43.478 0.00 0.00 46.45 3.18
646 674 3.993658 AGGAAGAAACCCCCTCTTTTT 57.006 42.857 0.00 0.00 33.24 1.94
657 685 6.151312 GGGGTAGAATCAGAAAAGGAAGAAAC 59.849 42.308 0.00 0.00 0.00 2.78
696 724 4.778958 AGCCCCTCAATCAATTTGATTTCA 59.221 37.500 19.55 10.10 44.03 2.69
701 729 4.840115 AGAAAAGCCCCTCAATCAATTTGA 59.160 37.500 0.75 0.75 42.09 2.69
705 733 3.019564 CGAGAAAAGCCCCTCAATCAAT 58.980 45.455 0.00 0.00 0.00 2.57
726 754 2.860735 CTGGTCGGTTCGATCTCATTTC 59.139 50.000 2.29 0.00 37.91 2.17
728 756 1.825474 ACTGGTCGGTTCGATCTCATT 59.175 47.619 2.29 0.00 37.91 2.57
733 761 2.412089 CAGAAAACTGGTCGGTTCGATC 59.588 50.000 0.00 0.00 38.42 3.69
741 769 3.592381 CAGTTCACAGAAAACTGGTCG 57.408 47.619 7.88 0.00 46.32 4.79
746 774 1.308998 CGGGCAGTTCACAGAAAACT 58.691 50.000 0.00 0.00 37.44 2.66
774 802 3.003275 TGCCGAGAACATCACAGAAAAAC 59.997 43.478 0.00 0.00 0.00 2.43
814 844 1.406341 CCTCGTGGCGGAATCCTTTTA 60.406 52.381 0.00 0.00 0.00 1.52
863 898 1.135517 GGAGAAGAGACAGAGACGTGC 60.136 57.143 0.00 0.00 0.00 5.34
1047 1422 4.508128 TCGTCGGCGCCTGAATCC 62.508 66.667 26.68 10.57 38.14 3.01
1248 1623 4.452733 GACGAAGGGGTGGGCGAG 62.453 72.222 0.00 0.00 0.00 5.03
1344 1719 1.144936 GATCCCGCTCCTGAACCTG 59.855 63.158 0.00 0.00 0.00 4.00
1408 1783 0.323451 GGGGCGAAGAAATTGGAGGT 60.323 55.000 0.00 0.00 0.00 3.85
1541 1916 0.179045 CAAGTAATGCCTCCCCTCGG 60.179 60.000 0.00 0.00 0.00 4.63
1612 1987 1.140312 TGTCTGACCCTTTGCTCCTT 58.860 50.000 5.17 0.00 0.00 3.36
1639 2014 2.820728 TCCCTCTCCTCGTTGTCATA 57.179 50.000 0.00 0.00 0.00 2.15
1645 2020 1.479709 CACTCATCCCTCTCCTCGTT 58.520 55.000 0.00 0.00 0.00 3.85
1721 2096 2.764128 GGCCATCCACCTCCTCGA 60.764 66.667 0.00 0.00 0.00 4.04
1722 2097 3.866582 GGGCCATCCACCTCCTCG 61.867 72.222 4.39 0.00 35.00 4.63
1749 2124 2.587322 CTTGCATTACCCTCGCCCGA 62.587 60.000 0.00 0.00 0.00 5.14
2131 2511 6.987992 CAGTTACACTAAAACTTACTCCACCA 59.012 38.462 0.00 0.00 34.99 4.17
2132 2512 6.988580 ACAGTTACACTAAAACTTACTCCACC 59.011 38.462 0.00 0.00 34.99 4.61
2133 2513 8.429493 AACAGTTACACTAAAACTTACTCCAC 57.571 34.615 0.00 0.00 34.99 4.02
2141 2521 8.848474 AGCATATGAACAGTTACACTAAAACT 57.152 30.769 6.97 0.00 37.67 2.66
2208 2588 1.308069 ACACATTCGCATGGTCAGGC 61.308 55.000 0.00 0.00 34.27 4.85
2209 2589 1.167851 AACACATTCGCATGGTCAGG 58.832 50.000 0.00 0.00 34.27 3.86
2219 2603 5.746245 TGAAAAGGTTAAGCAAACACATTCG 59.254 36.000 7.52 0.00 40.08 3.34
2246 2630 1.303806 TGCCGGGGGTAAAAAGAGC 60.304 57.895 2.18 0.00 0.00 4.09
2261 2645 4.669318 CATCAGACATGTCAAAATCTGCC 58.331 43.478 27.02 0.00 38.77 4.85
2420 2804 2.163010 CAGAAGTTCCGCATCATGCTTT 59.837 45.455 8.30 0.00 42.25 3.51
2429 2813 0.249868 CTGTGGACAGAAGTTCCGCA 60.250 55.000 0.04 4.65 46.59 5.69
2432 2816 1.230324 GTGCTGTGGACAGAAGTTCC 58.770 55.000 11.06 0.00 46.59 3.62
2448 2832 4.082733 GGTGGAGAGAAAATTTACCTGTGC 60.083 45.833 0.00 0.00 0.00 4.57
2488 2872 4.282195 GGATTCTGGGACGATAGAGAATGT 59.718 45.833 0.00 0.00 36.45 2.71
2500 2884 1.213926 AGATTGCCTGGATTCTGGGAC 59.786 52.381 0.00 0.00 32.52 4.46
2687 3071 8.743714 AGTTCATGGATCATTCTTCCTTTTTAC 58.256 33.333 0.00 0.00 34.17 2.01
3017 3404 3.327757 AGTGCCTTATCCTTCAACAGTGA 59.672 43.478 0.00 0.00 0.00 3.41
3041 3428 5.892119 CCTACTCCCTATCTACACAAAGTCA 59.108 44.000 0.00 0.00 0.00 3.41
3047 3434 5.988865 TCTTCCTACTCCCTATCTACACA 57.011 43.478 0.00 0.00 0.00 3.72
3048 3435 6.603224 TCTTCTTCCTACTCCCTATCTACAC 58.397 44.000 0.00 0.00 0.00 2.90
3274 3663 6.767902 GGACCAATGTCATGTGTAGATAACAT 59.232 38.462 0.00 0.00 43.65 2.71
3276 3665 6.258727 CAGGACCAATGTCATGTGTAGATAAC 59.741 42.308 0.00 0.00 45.71 1.89
3277 3666 6.348498 CAGGACCAATGTCATGTGTAGATAA 58.652 40.000 0.00 0.00 45.71 1.75
3279 3668 4.774124 CAGGACCAATGTCATGTGTAGAT 58.226 43.478 0.00 0.00 45.71 1.98
3366 3755 3.894427 ACCAACAGTTGTGCCAATTCATA 59.106 39.130 12.42 0.00 0.00 2.15
3425 3817 3.951037 AGAGCTGGTACATGACAGTAGAG 59.049 47.826 0.00 0.00 38.20 2.43
3585 3978 3.214696 AGGGCTACATTGCAATCCTAC 57.785 47.619 9.53 0.00 34.04 3.18
3607 4002 5.707298 TCAAGAAAAAGCCTGTAGGATTCAG 59.293 40.000 1.38 0.00 44.03 3.02
4149 4548 4.853924 AACTCATCACAACCACCAAATC 57.146 40.909 0.00 0.00 0.00 2.17
4263 4662 1.412710 TGGGATGCACCGAGAAGATAC 59.587 52.381 0.00 0.00 40.11 2.24
4295 4694 5.579753 ATCCCAGTGCAGAATCTATTGAT 57.420 39.130 0.00 0.00 33.70 2.57
4344 4743 9.260002 CAATGAATTTTTATACCACCCTAATGC 57.740 33.333 0.00 0.00 0.00 3.56
4517 4916 5.063438 AGCACACTATTAATGCAAGTACGTG 59.937 40.000 4.24 4.24 41.97 4.49
4575 4976 8.856490 AGCAATGAATATTTTGTCGGTTTATC 57.144 30.769 2.66 0.00 0.00 1.75
4617 5025 4.188462 CAATTTGGATGATGTGCAAGCAT 58.812 39.130 0.00 0.00 39.44 3.79
4623 5031 5.870978 AGCTAAAACAATTTGGATGATGTGC 59.129 36.000 0.78 0.00 0.00 4.57
4741 5210 9.014297 ACCCTTAATATTCAAACTATGCTATGC 57.986 33.333 0.00 0.00 0.00 3.14
4994 5464 2.419297 GGAGCTGTCATCTTCCGAATGT 60.419 50.000 0.00 0.00 0.00 2.71
5113 5583 0.320771 GTCCACCACTGCGACTTCAT 60.321 55.000 0.00 0.00 0.00 2.57
5168 5638 3.777478 CATAACATTTGAGGCCTTGCTG 58.223 45.455 6.77 5.31 0.00 4.41
5256 5726 2.462456 TCATCGCCTATGAGAATGGC 57.538 50.000 0.00 0.00 39.77 4.40
5273 5743 4.284234 TCACTGAATGACACATCTTCCTCA 59.716 41.667 0.00 0.00 29.99 3.86
5337 5807 1.000396 GGCTGAGGTTGGCTTGGAT 60.000 57.895 0.00 0.00 0.00 3.41
5342 5812 0.185901 TTTTCAGGCTGAGGTTGGCT 59.814 50.000 17.91 0.00 41.11 4.75
5349 5819 0.955919 GTCCCGGTTTTCAGGCTGAG 60.956 60.000 17.91 5.50 33.82 3.35
5368 5838 4.519540 AGAACAATCAATTTTGACCGGG 57.480 40.909 6.32 0.00 40.49 5.73
5394 5864 8.754991 TTCATTGTACAACTTCCCTTTTTCTA 57.245 30.769 11.22 0.00 0.00 2.10
5399 5869 6.183360 CCCTTTTCATTGTACAACTTCCCTTT 60.183 38.462 11.22 0.00 0.00 3.11
5443 5914 6.925165 GCTTTCCAGTTTTCATTCAGATTGAA 59.075 34.615 3.97 3.97 41.09 2.69
5448 5919 3.253188 CCGCTTTCCAGTTTTCATTCAGA 59.747 43.478 0.00 0.00 0.00 3.27
5450 5921 2.955660 ACCGCTTTCCAGTTTTCATTCA 59.044 40.909 0.00 0.00 0.00 2.57
5451 5922 3.643159 ACCGCTTTCCAGTTTTCATTC 57.357 42.857 0.00 0.00 0.00 2.67
5452 5923 3.383185 TCAACCGCTTTCCAGTTTTCATT 59.617 39.130 0.00 0.00 0.00 2.57
5453 5924 2.955660 TCAACCGCTTTCCAGTTTTCAT 59.044 40.909 0.00 0.00 0.00 2.57
5467 5938 2.607180 ACAAACAAGCAATTTCAACCGC 59.393 40.909 0.00 0.00 0.00 5.68
5551 6022 2.498644 TTACCATTGCATCCAACCGA 57.501 45.000 0.00 0.00 32.95 4.69
5854 6339 2.512485 TGCTGTGCTTTGTTGGATTG 57.488 45.000 0.00 0.00 0.00 2.67
5855 6340 3.395639 CATTGCTGTGCTTTGTTGGATT 58.604 40.909 0.00 0.00 0.00 3.01
5915 6400 1.918262 TGGCCTCATCAGGTCTTGATT 59.082 47.619 3.32 0.00 45.93 2.57
5916 6401 1.588239 TGGCCTCATCAGGTCTTGAT 58.412 50.000 3.32 0.00 45.93 2.57
5917 6402 1.361204 TTGGCCTCATCAGGTCTTGA 58.639 50.000 3.32 0.00 45.93 3.02
5918 6403 2.089980 CTTTGGCCTCATCAGGTCTTG 58.910 52.381 3.32 0.00 45.93 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.