Multiple sequence alignment - TraesCS4A01G253900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G253900 chr4A 100.000 3689 0 0 1 3689 565844317 565840629 0.000000e+00 6813.0
1 TraesCS4A01G253900 chr4A 96.128 904 35 0 1763 2666 566290515 566291418 0.000000e+00 1476.0
2 TraesCS4A01G253900 chr4A 87.394 706 53 16 759 1435 566289740 566290438 0.000000e+00 778.0
3 TraesCS4A01G253900 chr4D 87.619 2100 145 63 759 2787 36419097 36421152 0.000000e+00 2331.0
4 TraesCS4A01G253900 chr4D 97.143 35 1 0 2899 2933 180651361 180651327 3.980000e-05 60.2
5 TraesCS4A01G253900 chr4B 88.034 1989 137 50 1707 3659 52397939 52399862 0.000000e+00 2261.0
6 TraesCS4A01G253900 chr4B 93.889 900 50 3 1794 2688 52412400 52413299 0.000000e+00 1352.0
7 TraesCS4A01G253900 chr4B 94.000 750 42 1 2045 2791 53044715 53043966 0.000000e+00 1133.0
8 TraesCS4A01G253900 chr4B 92.052 692 51 4 2156 2845 52828424 52829113 0.000000e+00 970.0
9 TraesCS4A01G253900 chr4B 91.304 644 43 5 2202 2845 52817855 52818485 0.000000e+00 867.0
10 TraesCS4A01G253900 chr4B 85.899 695 49 32 759 1443 52397285 52397940 0.000000e+00 695.0
11 TraesCS4A01G253900 chr4B 89.024 410 42 2 1783 2189 52829687 52830096 4.250000e-139 505.0
12 TraesCS4A01G253900 chr4B 91.850 319 24 1 2045 2361 52895473 52895791 9.400000e-121 444.0
13 TraesCS4A01G253900 chr4B 95.307 277 13 0 2396 2672 52895790 52896066 1.220000e-119 440.0
14 TraesCS4A01G253900 chr4B 88.649 185 16 3 1447 1627 15761521 15761338 1.720000e-53 220.0
15 TraesCS4A01G253900 chr4B 93.284 134 9 0 2673 2806 52928033 52928166 8.080000e-47 198.0
16 TraesCS4A01G253900 chr4B 83.735 166 11 8 3426 3585 52929693 52929848 3.840000e-30 143.0
17 TraesCS4A01G253900 chr4B 87.805 123 9 3 3472 3588 53043517 53043395 4.970000e-29 139.0
18 TraesCS4A01G253900 chr3B 94.415 752 23 8 1 751 367478011 367478744 0.000000e+00 1138.0
19 TraesCS4A01G253900 chr1B 90.646 588 35 10 159 739 593609942 593610516 0.000000e+00 763.0
20 TraesCS4A01G253900 chr1B 81.780 236 32 9 1461 1694 518805397 518805623 1.750000e-43 187.0
21 TraesCS4A01G253900 chr1B 70.905 464 99 31 1781 2226 101527984 101527539 3.950000e-10 76.8
22 TraesCS4A01G253900 chr1B 78.049 123 14 11 1781 1897 101271313 101271198 8.550000e-07 65.8
23 TraesCS4A01G253900 chr5D 90.852 317 25 4 435 751 305892994 305893306 4.400000e-114 422.0
24 TraesCS4A01G253900 chr5D 89.941 169 15 2 1460 1627 451067166 451067333 2.230000e-52 217.0
25 TraesCS4A01G253900 chr5D 85.556 180 24 2 240 417 305850765 305850944 1.750000e-43 187.0
26 TraesCS4A01G253900 chr5B 89.590 317 31 2 435 751 351105128 351105442 5.740000e-108 401.0
27 TraesCS4A01G253900 chr5B 89.412 170 16 2 1459 1627 496272475 496272643 2.890000e-51 213.0
28 TraesCS4A01G253900 chr2D 90.000 170 15 2 1459 1627 325807583 325807415 6.200000e-53 219.0
29 TraesCS4A01G253900 chr2D 78.113 265 34 14 1459 1700 535629040 535629303 2.970000e-31 147.0
30 TraesCS4A01G253900 chr2D 76.562 192 19 15 1520 1694 408178964 408178782 8.490000e-12 82.4
31 TraesCS4A01G253900 chr2A 90.000 170 15 2 1459 1627 532858022 532857854 6.200000e-53 219.0
32 TraesCS4A01G253900 chr2A 75.486 257 38 12 1459 1695 63790405 63790656 6.520000e-18 102.0
33 TraesCS4A01G253900 chr7A 83.333 246 28 8 1459 1700 215680273 215680509 8.020000e-52 215.0
34 TraesCS4A01G253900 chr3A 89.412 170 16 2 1459 1627 621317532 621317700 2.890000e-51 213.0
35 TraesCS4A01G253900 chrUn 88.824 170 17 2 1459 1627 214070992 214071160 1.340000e-49 207.0
36 TraesCS4A01G253900 chr5A 91.964 112 9 0 428 539 391962602 391962491 1.370000e-34 158.0
37 TraesCS4A01G253900 chr1D 78.049 123 14 11 1781 1897 63429248 63429133 8.550000e-07 65.8
38 TraesCS4A01G253900 chr1D 83.824 68 11 0 2869 2936 399229508 399229441 8.550000e-07 65.8
39 TraesCS4A01G253900 chr7B 82.353 68 12 0 2869 2936 739935744 739935811 3.980000e-05 60.2
40 TraesCS4A01G253900 chr6B 96.875 32 1 0 3159 3190 134107116 134107147 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G253900 chr4A 565840629 565844317 3688 True 6813.0 6813 100.0000 1 3689 1 chr4A.!!$R1 3688
1 TraesCS4A01G253900 chr4A 566289740 566291418 1678 False 1127.0 1476 91.7610 759 2666 2 chr4A.!!$F1 1907
2 TraesCS4A01G253900 chr4D 36419097 36421152 2055 False 2331.0 2331 87.6190 759 2787 1 chr4D.!!$F1 2028
3 TraesCS4A01G253900 chr4B 52397285 52399862 2577 False 1478.0 2261 86.9665 759 3659 2 chr4B.!!$F3 2900
4 TraesCS4A01G253900 chr4B 52412400 52413299 899 False 1352.0 1352 93.8890 1794 2688 1 chr4B.!!$F1 894
5 TraesCS4A01G253900 chr4B 52817855 52818485 630 False 867.0 867 91.3040 2202 2845 1 chr4B.!!$F2 643
6 TraesCS4A01G253900 chr4B 52828424 52830096 1672 False 737.5 970 90.5380 1783 2845 2 chr4B.!!$F4 1062
7 TraesCS4A01G253900 chr4B 53043395 53044715 1320 True 636.0 1133 90.9025 2045 3588 2 chr4B.!!$R2 1543
8 TraesCS4A01G253900 chr4B 52895473 52896066 593 False 442.0 444 93.5785 2045 2672 2 chr4B.!!$F5 627
9 TraesCS4A01G253900 chr3B 367478011 367478744 733 False 1138.0 1138 94.4150 1 751 1 chr3B.!!$F1 750
10 TraesCS4A01G253900 chr1B 593609942 593610516 574 False 763.0 763 90.6460 159 739 1 chr1B.!!$F2 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
892 911 0.036010 CAACTCTCCAAGCCATCCGT 60.036 55.0 0.00 0.0 0.0 4.69 F
923 953 0.241749 CACAAGCATCGCCACACAAT 59.758 50.0 0.00 0.0 0.0 2.71 F
1743 1837 0.179121 ATGCAGCAATGGCAATGACG 60.179 50.0 6.76 0.0 45.6 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1729 1811 0.109781 AACGACGTCATTGCCATTGC 60.110 50.0 17.16 0.0 38.26 3.56 R
1759 1857 1.622607 CCCGTCAGGACCCTGCATAA 61.623 60.0 11.11 0.0 43.31 1.90 R
2961 3089 0.524392 CTCTGAGCGAGCTTGTACCG 60.524 60.0 2.14 0.0 31.99 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.895759 ACACCTACAAATTTGATAATGTGCTT 58.104 30.769 24.64 0.68 33.03 3.91
46 47 4.806571 TGCTTAGATCGCACCGTC 57.193 55.556 0.00 0.00 31.40 4.79
85 86 2.887889 CGCTGAAAACGGACGGCAA 61.888 57.895 0.00 0.00 38.17 4.52
115 117 0.757188 ATGGTGTTCCGCCCACAAAA 60.757 50.000 0.00 0.00 34.46 2.44
116 118 1.362355 GGTGTTCCGCCCACAAAAG 59.638 57.895 0.00 0.00 34.46 2.27
145 147 7.477945 TTTTAAGGACCCCGCAAAAATATAA 57.522 32.000 0.00 0.00 0.00 0.98
187 198 3.976169 TCGGGTTTGCAGAAAAATCTTG 58.024 40.909 0.00 0.00 0.00 3.02
188 199 2.476241 CGGGTTTGCAGAAAAATCTTGC 59.524 45.455 0.00 0.00 0.00 4.01
189 200 3.465871 GGGTTTGCAGAAAAATCTTGCA 58.534 40.909 0.00 0.00 0.00 4.08
192 203 5.876460 GGGTTTGCAGAAAAATCTTGCATAT 59.124 36.000 0.00 0.00 35.33 1.78
211 222 0.532573 TGGAAGCCACTTCGCTAGAG 59.467 55.000 0.00 0.00 40.99 2.43
212 223 0.818296 GGAAGCCACTTCGCTAGAGA 59.182 55.000 0.00 0.00 40.99 3.10
264 275 0.608035 GTTGCCGACCAAGGATTCCA 60.608 55.000 5.29 0.00 33.21 3.53
321 333 6.127479 TGGCAACTACTCAGTTTCAAAATGTT 60.127 34.615 0.00 0.00 42.51 2.71
393 405 0.320374 TCTGGGGTGTCAACATCGTC 59.680 55.000 0.00 0.00 0.00 4.20
396 408 1.274167 TGGGGTGTCAACATCGTCTAC 59.726 52.381 0.00 0.00 0.00 2.59
602 614 2.224018 GCATGCTTGTCAAAGGTTCCAA 60.224 45.455 11.37 0.00 33.68 3.53
606 618 3.068024 TGCTTGTCAAAGGTTCCAATGTC 59.932 43.478 0.00 0.00 33.68 3.06
608 620 4.794003 GCTTGTCAAAGGTTCCAATGTCAG 60.794 45.833 0.00 0.00 33.68 3.51
718 730 2.233271 CGAGCCTGCAAAATATCCCAT 58.767 47.619 0.00 0.00 0.00 4.00
743 755 3.395858 CACAGATGCTCTAAAAAGCCG 57.604 47.619 0.00 0.00 41.77 5.52
751 763 2.718563 CTCTAAAAAGCCGCCCCTTAA 58.281 47.619 0.00 0.00 0.00 1.85
752 764 2.683362 CTCTAAAAAGCCGCCCCTTAAG 59.317 50.000 0.00 0.00 0.00 1.85
753 765 1.134367 CTAAAAAGCCGCCCCTTAAGC 59.866 52.381 0.00 0.00 0.00 3.09
754 766 0.830023 AAAAAGCCGCCCCTTAAGCA 60.830 50.000 0.00 0.00 0.00 3.91
755 767 1.250840 AAAAGCCGCCCCTTAAGCAG 61.251 55.000 0.00 0.00 0.00 4.24
756 768 2.426305 AAAGCCGCCCCTTAAGCAGT 62.426 55.000 0.00 0.00 0.00 4.40
757 769 1.559065 AAGCCGCCCCTTAAGCAGTA 61.559 55.000 0.00 0.00 0.00 2.74
763 775 2.562635 GCCCCTTAAGCAGTAAGTAGC 58.437 52.381 0.00 5.23 38.03 3.58
797 809 2.097160 GCAGATTCACAGCGCACG 59.903 61.111 11.47 1.85 0.00 5.34
812 824 3.437795 ACGCCAGACTACCGACCG 61.438 66.667 1.47 0.00 0.00 4.79
877 896 1.545651 GCCTTTGTAGCCACTCCAACT 60.546 52.381 0.00 0.00 0.00 3.16
879 898 2.039084 CCTTTGTAGCCACTCCAACTCT 59.961 50.000 0.00 0.00 0.00 3.24
880 899 3.330267 CTTTGTAGCCACTCCAACTCTC 58.670 50.000 0.00 0.00 0.00 3.20
890 909 0.620556 TCCAACTCTCCAAGCCATCC 59.379 55.000 0.00 0.00 0.00 3.51
891 910 0.745845 CCAACTCTCCAAGCCATCCG 60.746 60.000 0.00 0.00 0.00 4.18
892 911 0.036010 CAACTCTCCAAGCCATCCGT 60.036 55.000 0.00 0.00 0.00 4.69
904 923 0.249489 CCATCCGTCGATCCCAAGAC 60.249 60.000 0.00 0.00 0.00 3.01
923 953 0.241749 CACAAGCATCGCCACACAAT 59.758 50.000 0.00 0.00 0.00 2.71
954 984 3.944015 CACCAAATCCCAAAACAAGCAAA 59.056 39.130 0.00 0.00 0.00 3.68
955 985 4.035441 CACCAAATCCCAAAACAAGCAAAG 59.965 41.667 0.00 0.00 0.00 2.77
956 986 4.080638 ACCAAATCCCAAAACAAGCAAAGA 60.081 37.500 0.00 0.00 0.00 2.52
957 987 4.512571 CCAAATCCCAAAACAAGCAAAGAG 59.487 41.667 0.00 0.00 0.00 2.85
963 996 3.553105 CCAAAACAAGCAAAGAGACAAGC 59.447 43.478 0.00 0.00 0.00 4.01
990 1023 6.607198 AGAAAACCCAAAATCCGATCATACAT 59.393 34.615 0.00 0.00 0.00 2.29
997 1030 6.128822 CCAAAATCCGATCATACATACACTCG 60.129 42.308 0.00 0.00 0.00 4.18
998 1031 3.554259 TCCGATCATACATACACTCGC 57.446 47.619 0.00 0.00 0.00 5.03
1004 1037 2.037121 TCATACATACACTCGCCATGGG 59.963 50.000 15.13 3.69 0.00 4.00
1410 1467 3.655777 ACCCAACCCTCAAGTAATCAAGA 59.344 43.478 0.00 0.00 0.00 3.02
1430 1487 8.966069 TCAAGATCGTCTTCTTCTTCTATCTA 57.034 34.615 0.00 0.00 33.78 1.98
1477 1538 7.328249 CAATGCCGCAACGGAATATAAATATTT 59.672 33.333 10.78 5.89 45.79 1.40
1478 1539 8.516234 AATGCCGCAACGGAATATAAATATTTA 58.484 29.630 10.78 10.27 45.79 1.40
1507 1570 6.428159 ACTTTAGCTTGTCATTTACCTGTCAG 59.572 38.462 0.00 0.00 0.00 3.51
1517 1580 8.046708 TGTCATTTACCTGTCAGTAATAATGCT 58.953 33.333 0.00 0.00 32.45 3.79
1518 1581 9.542462 GTCATTTACCTGTCAGTAATAATGCTA 57.458 33.333 0.00 0.00 32.45 3.49
1523 1586 9.899661 TTACCTGTCAGTAATAATGCTAATTGT 57.100 29.630 0.00 0.00 0.00 2.71
1559 1622 9.844790 TGTTCATCAAATTCTGACATGAATTAC 57.155 29.630 0.00 7.16 43.40 1.89
1560 1623 9.844790 GTTCATCAAATTCTGACATGAATTACA 57.155 29.630 0.00 4.64 43.40 2.41
1643 1724 8.310122 AGTAAATTATGCATGGAAAGTTGGAT 57.690 30.769 10.16 0.00 0.00 3.41
1644 1725 8.199449 AGTAAATTATGCATGGAAAGTTGGATG 58.801 33.333 10.16 0.00 0.00 3.51
1648 1729 2.827322 TGCATGGAAAGTTGGATGAAGG 59.173 45.455 0.00 0.00 0.00 3.46
1650 1731 2.603075 TGGAAAGTTGGATGAAGGGG 57.397 50.000 0.00 0.00 0.00 4.79
1653 1734 2.225017 GGAAAGTTGGATGAAGGGGTGA 60.225 50.000 0.00 0.00 0.00 4.02
1656 1737 1.285962 AGTTGGATGAAGGGGTGATGG 59.714 52.381 0.00 0.00 0.00 3.51
1657 1738 0.630673 TTGGATGAAGGGGTGATGGG 59.369 55.000 0.00 0.00 0.00 4.00
1743 1837 0.179121 ATGCAGCAATGGCAATGACG 60.179 50.000 6.76 0.00 45.60 4.35
1745 1839 0.799534 GCAGCAATGGCAATGACGTC 60.800 55.000 9.11 9.11 44.61 4.34
1756 1854 1.701431 CAATGACGTCGTTGCGAAAAC 59.299 47.619 31.33 0.00 37.72 2.43
1759 1857 0.299597 GACGTCGTTGCGAAAACTGT 59.700 50.000 0.00 0.00 37.72 3.55
1761 1859 1.925847 ACGTCGTTGCGAAAACTGTTA 59.074 42.857 0.00 0.00 37.72 2.41
1789 1887 1.261938 CCTGACGGGGTACATGGACA 61.262 60.000 10.99 0.00 0.00 4.02
1794 1892 0.393077 CGGGGTACATGGACATCCTC 59.607 60.000 10.99 0.00 36.82 3.71
2120 2218 0.107945 GAGATGCTCACCTTCGCCTT 60.108 55.000 0.00 0.00 0.00 4.35
2304 2404 2.872245 CACACAGTTCCTCAACGACATT 59.128 45.455 0.00 0.00 37.61 2.71
2666 2766 0.035739 AACCTAAACGCCACGACCAT 59.964 50.000 0.00 0.00 0.00 3.55
2852 2978 5.460419 GGCATCTAGTGTTGAGTCGAAATAG 59.540 44.000 0.00 0.00 0.00 1.73
2855 2981 2.973945 AGTGTTGAGTCGAAATAGGGC 58.026 47.619 0.00 0.00 0.00 5.19
2856 2982 1.659098 GTGTTGAGTCGAAATAGGGCG 59.341 52.381 0.00 0.00 0.00 6.13
2857 2983 0.651031 GTTGAGTCGAAATAGGGCGC 59.349 55.000 0.00 0.00 0.00 6.53
2858 2984 0.804544 TTGAGTCGAAATAGGGCGCG 60.805 55.000 0.00 0.00 0.00 6.86
2859 2985 1.949631 GAGTCGAAATAGGGCGCGG 60.950 63.158 8.83 0.00 0.00 6.46
2860 2986 2.965462 GTCGAAATAGGGCGCGGG 60.965 66.667 8.83 0.00 0.00 6.13
2861 2987 4.230002 TCGAAATAGGGCGCGGGG 62.230 66.667 8.83 0.00 0.00 5.73
2883 3009 5.336451 GGGGGCATATTTATTTTAGAAGCGG 60.336 44.000 0.00 0.00 0.00 5.52
2886 3012 6.349363 GGGCATATTTATTTTAGAAGCGGAGG 60.349 42.308 0.00 0.00 0.00 4.30
2907 3033 6.872585 AGGATTATCCTCATCCTCTTCATC 57.127 41.667 8.15 0.00 45.66 2.92
2960 3088 6.318648 AGCAAATATCCAAAAAGTCTGCGATA 59.681 34.615 0.00 0.00 32.63 2.92
2961 3089 6.414987 GCAAATATCCAAAAAGTCTGCGATAC 59.585 38.462 0.00 0.00 0.00 2.24
3044 3182 0.112801 ATAGGACGAGACCTAGGCCC 59.887 60.000 9.30 0.45 44.34 5.80
3078 3223 3.377798 ACTCGTCGGATTCTAGGAGTTTC 59.622 47.826 0.00 0.00 37.52 2.78
3079 3224 3.349927 TCGTCGGATTCTAGGAGTTTCA 58.650 45.455 0.00 0.00 0.00 2.69
3083 3228 5.581085 CGTCGGATTCTAGGAGTTTCATTTT 59.419 40.000 0.00 0.00 0.00 1.82
3084 3229 6.237861 CGTCGGATTCTAGGAGTTTCATTTTC 60.238 42.308 0.00 0.00 0.00 2.29
3147 3292 6.351456 GGAGTTAAACTCAGTTAGAGATGCCT 60.351 42.308 0.00 0.00 46.79 4.75
3168 3313 5.458508 GCCTCTAAGATAGTTACTCCCTCCT 60.459 48.000 0.00 0.00 0.00 3.69
3238 3383 5.831702 GTCTTACATTCTAAGACGGAGGA 57.168 43.478 4.85 0.00 42.41 3.71
3240 3385 6.628185 GTCTTACATTCTAAGACGGAGGAAA 58.372 40.000 4.85 0.00 42.41 3.13
3247 3392 7.549488 ACATTCTAAGACGGAGGAAATACTTTG 59.451 37.037 0.00 0.00 0.00 2.77
3248 3393 6.600882 TCTAAGACGGAGGAAATACTTTGT 57.399 37.500 0.00 0.00 0.00 2.83
3249 3394 6.395629 TCTAAGACGGAGGAAATACTTTGTG 58.604 40.000 0.00 0.00 0.00 3.33
3250 3395 4.618920 AGACGGAGGAAATACTTTGTGT 57.381 40.909 0.00 0.00 0.00 3.72
3251 3396 5.733620 AGACGGAGGAAATACTTTGTGTA 57.266 39.130 0.00 0.00 35.37 2.90
3256 3401 6.815142 ACGGAGGAAATACTTTGTGTATGTAC 59.185 38.462 0.00 0.00 40.69 2.90
3261 3406 8.956426 AGGAAATACTTTGTGTATGTACAATGG 58.044 33.333 0.00 0.00 40.69 3.16
3269 3414 3.250040 GTGTATGTACAATGGGGATTCGC 59.750 47.826 0.00 0.00 38.04 4.70
3296 3441 1.555533 CCTTCCCTGTTCCCTGTACTC 59.444 57.143 0.00 0.00 0.00 2.59
3298 3443 0.113776 TCCCTGTTCCCTGTACTCGT 59.886 55.000 0.00 0.00 0.00 4.18
3319 3464 6.321717 TCGTACAAAATCTTGCATTTCCATC 58.678 36.000 0.00 0.00 35.84 3.51
3330 3475 6.433716 TCTTGCATTTCCATCATGTGACTAAA 59.566 34.615 0.00 0.00 0.00 1.85
3331 3476 5.953183 TGCATTTCCATCATGTGACTAAAC 58.047 37.500 0.00 0.00 0.00 2.01
3336 3481 9.258826 CATTTCCATCATGTGACTAAACAAAAA 57.741 29.630 0.00 0.00 32.81 1.94
3339 3484 6.015519 TCCATCATGTGACTAAACAAAAAGGG 60.016 38.462 0.00 0.00 32.81 3.95
3341 3486 7.432869 CATCATGTGACTAAACAAAAAGGGAA 58.567 34.615 0.00 0.00 32.81 3.97
3343 3488 8.017418 TCATGTGACTAAACAAAAAGGGAATT 57.983 30.769 0.00 0.00 32.81 2.17
3344 3489 9.137459 TCATGTGACTAAACAAAAAGGGAATTA 57.863 29.630 0.00 0.00 32.81 1.40
3345 3490 9.410556 CATGTGACTAAACAAAAAGGGAATTAG 57.589 33.333 0.00 0.00 32.81 1.73
3346 3491 7.430441 TGTGACTAAACAAAAAGGGAATTAGC 58.570 34.615 0.00 0.00 0.00 3.09
3347 3492 6.866770 GTGACTAAACAAAAAGGGAATTAGCC 59.133 38.462 0.00 0.00 0.00 3.93
3355 3500 3.276281 GGGAATTAGCCCGGTTTGT 57.724 52.632 0.00 0.00 38.58 2.83
3356 3501 2.423446 GGGAATTAGCCCGGTTTGTA 57.577 50.000 0.00 0.00 38.58 2.41
3357 3502 2.725637 GGGAATTAGCCCGGTTTGTAA 58.274 47.619 0.00 0.00 38.58 2.41
3361 3506 5.009310 GGGAATTAGCCCGGTTTGTAATAAG 59.991 44.000 0.00 0.00 38.58 1.73
3364 3509 6.937436 ATTAGCCCGGTTTGTAATAAGAAG 57.063 37.500 0.00 0.00 0.00 2.85
3404 3550 3.311871 CACAGTGAGCTTGAATATCCTGC 59.688 47.826 0.00 0.00 0.00 4.85
3411 3557 2.620585 GCTTGAATATCCTGCTTCACCC 59.379 50.000 0.00 0.00 31.41 4.61
3418 3564 1.734655 TCCTGCTTCACCCTTTCTCT 58.265 50.000 0.00 0.00 0.00 3.10
3421 3567 2.303022 CCTGCTTCACCCTTTCTCTGTA 59.697 50.000 0.00 0.00 0.00 2.74
3432 3578 7.030165 CACCCTTTCTCTGTAGCGTATATATG 58.970 42.308 0.00 0.00 0.00 1.78
3438 3584 8.843885 TTCTCTGTAGCGTATATATGTACTGT 57.156 34.615 7.87 0.00 0.00 3.55
3504 3650 2.814280 AAACATTCTCCTGTCGACGT 57.186 45.000 11.62 0.00 0.00 4.34
3505 3651 2.349297 AACATTCTCCTGTCGACGTC 57.651 50.000 11.62 5.18 0.00 4.34
3593 3745 1.176527 ACCTTCCACGCATCCAAATG 58.823 50.000 0.00 0.00 35.87 2.32
3608 3760 1.065102 CAAATGGATTCGAGCAGCAGG 59.935 52.381 0.00 0.00 0.00 4.85
3621 3773 3.130160 GCAGGCAGCAGTACAGGC 61.130 66.667 0.00 0.00 44.79 4.85
3670 3822 5.488919 AGAAAGGAAGAGAGAGAGAGAGAGA 59.511 44.000 0.00 0.00 0.00 3.10
3671 3823 5.365021 AAGGAAGAGAGAGAGAGAGAGAG 57.635 47.826 0.00 0.00 0.00 3.20
3672 3824 4.624913 AGGAAGAGAGAGAGAGAGAGAGA 58.375 47.826 0.00 0.00 0.00 3.10
3673 3825 4.653341 AGGAAGAGAGAGAGAGAGAGAGAG 59.347 50.000 0.00 0.00 0.00 3.20
3674 3826 4.651503 GGAAGAGAGAGAGAGAGAGAGAGA 59.348 50.000 0.00 0.00 0.00 3.10
3677 3829 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3679 3831 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3680 3832 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3682 3834 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3685 3837 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3686 3838 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3687 3839 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3688 3840 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 0.321298 AAGCACCATGGGTACACGAC 60.321 55.000 18.09 0.00 32.11 4.34
46 47 0.605319 ACAAGCACCATGGGTACACG 60.605 55.000 18.09 2.15 32.11 4.49
85 86 2.814183 GAACACCATCGACGAGCGGT 62.814 60.000 14.33 14.33 41.33 5.68
115 117 4.513406 TGCGGGGTCCTTAAAATATTCT 57.487 40.909 0.00 0.00 0.00 2.40
116 118 5.585820 TTTGCGGGGTCCTTAAAATATTC 57.414 39.130 0.00 0.00 0.00 1.75
145 147 5.478407 CGAAAAACATTGGGCTCCTTAAAT 58.522 37.500 0.00 0.00 0.00 1.40
187 198 0.308993 GCGAAGTGGCTTCCATATGC 59.691 55.000 0.00 0.00 37.20 3.14
188 199 1.959042 AGCGAAGTGGCTTCCATATG 58.041 50.000 0.00 0.00 41.39 1.78
189 200 2.965831 TCTAGCGAAGTGGCTTCCATAT 59.034 45.455 3.63 0.00 41.39 1.78
192 203 0.532573 CTCTAGCGAAGTGGCTTCCA 59.467 55.000 3.63 0.00 41.39 3.53
234 245 1.067821 GGTCGGCAACAAATTGTCCAA 59.932 47.619 0.00 0.00 37.10 3.53
321 333 3.237268 AGGCTTGACACATGGGTAAAA 57.763 42.857 0.00 0.00 0.00 1.52
393 405 4.024218 GCTTTAGATGGCTGCATTCTGTAG 60.024 45.833 12.23 10.12 33.01 2.74
396 408 2.034305 GGCTTTAGATGGCTGCATTCTG 59.966 50.000 12.23 0.08 0.00 3.02
602 614 7.340232 TCTGGCAAAAGCTTATATTTCTGACAT 59.660 33.333 0.00 0.00 0.00 3.06
606 618 6.420008 GCATCTGGCAAAAGCTTATATTTCTG 59.580 38.462 0.00 0.00 43.97 3.02
608 620 6.760161 GCATCTGGCAAAAGCTTATATTTC 57.240 37.500 0.00 0.00 43.97 2.17
740 752 1.078001 TTACTGCTTAAGGGGCGGC 60.078 57.895 0.00 0.00 39.46 6.53
743 755 2.170817 AGCTACTTACTGCTTAAGGGGC 59.829 50.000 4.29 11.25 41.58 5.80
751 763 1.331138 CGCGTCTAGCTACTTACTGCT 59.669 52.381 0.00 0.00 45.59 4.24
752 764 1.329906 TCGCGTCTAGCTACTTACTGC 59.670 52.381 5.77 0.00 45.59 4.40
753 765 3.670311 TTCGCGTCTAGCTACTTACTG 57.330 47.619 5.77 0.00 45.59 2.74
754 766 4.334759 TCAATTCGCGTCTAGCTACTTACT 59.665 41.667 5.77 0.00 45.59 2.24
755 767 4.595116 TCAATTCGCGTCTAGCTACTTAC 58.405 43.478 5.77 0.00 45.59 2.34
756 768 4.888038 TCAATTCGCGTCTAGCTACTTA 57.112 40.909 5.77 0.00 45.59 2.24
757 769 3.777465 TCAATTCGCGTCTAGCTACTT 57.223 42.857 5.77 0.00 45.59 2.24
797 809 3.412879 GAGCGGTCGGTAGTCTGGC 62.413 68.421 0.00 0.00 0.00 4.85
812 824 0.243095 AGTTACGTCGTCCTTGGAGC 59.757 55.000 0.00 0.00 0.00 4.70
863 881 1.267121 TGGAGAGTTGGAGTGGCTAC 58.733 55.000 0.00 0.00 0.00 3.58
877 896 1.043116 ATCGACGGATGGCTTGGAGA 61.043 55.000 0.00 0.00 0.00 3.71
879 898 1.441729 GATCGACGGATGGCTTGGA 59.558 57.895 0.00 0.00 31.51 3.53
880 899 1.595382 GGATCGACGGATGGCTTGG 60.595 63.158 0.00 0.00 31.51 3.61
890 909 1.350193 CTTGTGTCTTGGGATCGACG 58.650 55.000 0.00 0.00 32.93 5.12
891 910 1.079503 GCTTGTGTCTTGGGATCGAC 58.920 55.000 0.00 0.00 0.00 4.20
892 911 0.684535 TGCTTGTGTCTTGGGATCGA 59.315 50.000 0.00 0.00 0.00 3.59
904 923 0.241749 ATTGTGTGGCGATGCTTGTG 59.758 50.000 0.00 0.00 0.00 3.33
923 953 0.035820 GGGATTTGGTGGTCGCTGTA 60.036 55.000 0.00 0.00 0.00 2.74
954 984 3.297134 TGGGTTTTCTTGCTTGTCTCT 57.703 42.857 0.00 0.00 0.00 3.10
955 985 4.385358 TTTGGGTTTTCTTGCTTGTCTC 57.615 40.909 0.00 0.00 0.00 3.36
956 986 4.817318 TTTTGGGTTTTCTTGCTTGTCT 57.183 36.364 0.00 0.00 0.00 3.41
957 987 4.511454 GGATTTTGGGTTTTCTTGCTTGTC 59.489 41.667 0.00 0.00 0.00 3.18
963 996 5.132897 TGATCGGATTTTGGGTTTTCTTG 57.867 39.130 0.00 0.00 0.00 3.02
990 1023 0.616395 TTCTCCCCATGGCGAGTGTA 60.616 55.000 22.88 9.62 0.00 2.90
997 1030 2.196245 GCGGATTTCTCCCCATGGC 61.196 63.158 6.09 0.00 38.45 4.40
998 1031 1.529244 GGCGGATTTCTCCCCATGG 60.529 63.158 4.14 4.14 38.45 3.66
1004 1037 1.217882 CATACGTGGCGGATTTCTCC 58.782 55.000 0.00 0.00 38.29 3.71
1108 1162 4.554036 GGAGCCCGGGATGAGCAC 62.554 72.222 29.31 4.92 0.00 4.40
1258 1312 3.706373 GAAGCAGCGGGTGAGGGA 61.706 66.667 12.03 0.00 0.00 4.20
1284 1338 2.918549 GCGGTCGTAGTAGAGCATCATG 60.919 54.545 0.00 0.00 38.44 3.07
1338 1392 3.371063 TCGTCGACCCTGGTCAGC 61.371 66.667 16.17 7.02 44.77 4.26
1340 1394 1.521450 GAAGTCGTCGACCCTGGTCA 61.521 60.000 21.40 1.31 44.77 4.02
1351 1405 2.126031 GGTGGAGCCGAAGTCGTC 60.126 66.667 0.00 0.00 37.74 4.20
1436 1493 4.273480 GCGGCATTGTTCTATAGTTGACAT 59.727 41.667 0.00 0.00 0.00 3.06
1438 1495 3.621268 TGCGGCATTGTTCTATAGTTGAC 59.379 43.478 0.00 0.00 0.00 3.18
1439 1496 3.867857 TGCGGCATTGTTCTATAGTTGA 58.132 40.909 0.00 0.00 0.00 3.18
1440 1497 4.342772 GTTGCGGCATTGTTCTATAGTTG 58.657 43.478 2.28 0.00 0.00 3.16
1441 1498 3.063452 CGTTGCGGCATTGTTCTATAGTT 59.937 43.478 2.28 0.00 0.00 2.24
1442 1499 2.607635 CGTTGCGGCATTGTTCTATAGT 59.392 45.455 2.28 0.00 0.00 2.12
1443 1500 2.032894 CCGTTGCGGCATTGTTCTATAG 60.033 50.000 2.28 0.00 41.17 1.31
1444 1501 1.937223 CCGTTGCGGCATTGTTCTATA 59.063 47.619 2.28 0.00 41.17 1.31
1446 1503 2.167161 CCGTTGCGGCATTGTTCTA 58.833 52.632 2.28 0.00 41.17 2.10
1447 1504 2.953821 CCGTTGCGGCATTGTTCT 59.046 55.556 2.28 0.00 41.17 3.01
1478 1539 9.297037 ACAGGTAAATGACAAGCTAAAGTATTT 57.703 29.630 0.00 0.00 43.42 1.40
1480 1543 8.100791 TGACAGGTAAATGACAAGCTAAAGTAT 58.899 33.333 0.00 0.00 0.00 2.12
1483 1546 6.428159 ACTGACAGGTAAATGACAAGCTAAAG 59.572 38.462 7.51 0.00 0.00 1.85
1484 1547 6.296026 ACTGACAGGTAAATGACAAGCTAAA 58.704 36.000 7.51 0.00 0.00 1.85
1500 1563 8.213518 ACACAATTAGCATTATTACTGACAGG 57.786 34.615 7.51 0.00 0.00 4.00
1624 1687 5.127519 CCTTCATCCAACTTTCCATGCATAA 59.872 40.000 0.00 0.00 0.00 1.90
1632 1713 2.171003 CACCCCTTCATCCAACTTTCC 58.829 52.381 0.00 0.00 0.00 3.13
1633 1714 3.154827 TCACCCCTTCATCCAACTTTC 57.845 47.619 0.00 0.00 0.00 2.62
1636 1717 1.285962 CCATCACCCCTTCATCCAACT 59.714 52.381 0.00 0.00 0.00 3.16
1694 1776 5.572896 CACCCGCATCATTTTTCTTTACTTC 59.427 40.000 0.00 0.00 0.00 3.01
1695 1777 5.010617 ACACCCGCATCATTTTTCTTTACTT 59.989 36.000 0.00 0.00 0.00 2.24
1700 1782 2.095263 CGACACCCGCATCATTTTTCTT 60.095 45.455 0.00 0.00 0.00 2.52
1714 1796 2.216750 ATTGCTGCATTGCGACACCC 62.217 55.000 1.84 0.00 35.36 4.61
1726 1808 0.799534 GACGTCATTGCCATTGCTGC 60.800 55.000 11.55 0.00 38.71 5.25
1727 1809 0.521867 CGACGTCATTGCCATTGCTG 60.522 55.000 17.16 0.00 38.71 4.41
1729 1811 0.109781 AACGACGTCATTGCCATTGC 60.110 50.000 17.16 0.00 38.26 3.56
1743 1837 2.650297 GCATAACAGTTTTCGCAACGAC 59.350 45.455 0.00 0.00 34.89 4.34
1745 1839 2.645163 TGCATAACAGTTTTCGCAACG 58.355 42.857 0.00 0.00 0.00 4.10
1751 1849 3.191371 CAGGACCCTGCATAACAGTTTTC 59.809 47.826 2.75 0.00 45.68 2.29
1756 1854 1.740380 CGTCAGGACCCTGCATAACAG 60.740 57.143 11.11 0.00 46.77 3.16
1759 1857 1.622607 CCCGTCAGGACCCTGCATAA 61.623 60.000 11.11 0.00 43.31 1.90
1761 1859 3.402681 CCCGTCAGGACCCTGCAT 61.403 66.667 11.11 0.00 43.31 3.96
2580 2680 1.890979 GAGGATGCCCATGTGCGAG 60.891 63.158 0.00 0.00 33.88 5.03
2729 2841 6.585416 AGCAAATCTCAACAACATTTTTCCT 58.415 32.000 0.00 0.00 0.00 3.36
2732 2844 7.212274 AGCTAGCAAATCTCAACAACATTTTT 58.788 30.769 18.83 0.00 0.00 1.94
2859 2985 5.336451 CCGCTTCTAAAATAAATATGCCCCC 60.336 44.000 0.00 0.00 0.00 5.40
2860 2986 5.475564 TCCGCTTCTAAAATAAATATGCCCC 59.524 40.000 0.00 0.00 0.00 5.80
2861 2987 6.349363 CCTCCGCTTCTAAAATAAATATGCCC 60.349 42.308 0.00 0.00 0.00 5.36
2862 2988 6.430000 TCCTCCGCTTCTAAAATAAATATGCC 59.570 38.462 0.00 0.00 0.00 4.40
2863 2989 7.435068 TCCTCCGCTTCTAAAATAAATATGC 57.565 36.000 0.00 0.00 0.00 3.14
2867 2993 9.232473 GGATAATCCTCCGCTTCTAAAATAAAT 57.768 33.333 0.00 0.00 32.53 1.40
2922 3048 7.144722 TGGATATTTGCTTAATAAGATGGCG 57.855 36.000 3.88 0.00 32.63 5.69
2960 3088 1.213013 CTGAGCGAGCTTGTACCGT 59.787 57.895 2.14 0.00 0.00 4.83
2961 3089 0.524392 CTCTGAGCGAGCTTGTACCG 60.524 60.000 2.14 0.00 31.99 4.02
3010 3138 6.826231 TCTCGTCCTATTTTTGCCAATTATGA 59.174 34.615 0.00 0.00 0.00 2.15
3016 3144 3.078837 GGTCTCGTCCTATTTTTGCCAA 58.921 45.455 0.00 0.00 0.00 4.52
3017 3145 2.304761 AGGTCTCGTCCTATTTTTGCCA 59.695 45.455 0.00 0.00 35.87 4.92
3060 3205 6.594159 TGAAAATGAAACTCCTAGAATCCGAC 59.406 38.462 0.00 0.00 0.00 4.79
3094 3239 4.082463 ACGCCTTTTCAAACTTGAACTCAA 60.082 37.500 4.38 0.00 45.99 3.02
3101 3246 5.344884 TCCTTAAACGCCTTTTCAAACTTG 58.655 37.500 0.00 0.00 0.00 3.16
3147 3292 7.129038 TGAGAAGGAGGGAGTAACTATCTTAGA 59.871 40.741 0.00 0.00 0.00 2.10
3226 3371 6.164176 ACACAAAGTATTTCCTCCGTCTTAG 58.836 40.000 0.00 0.00 35.03 2.18
3236 3381 8.188139 CCCATTGTACATACACAAAGTATTTCC 58.812 37.037 0.00 0.00 41.47 3.13
3238 3383 7.891183 TCCCCATTGTACATACACAAAGTATTT 59.109 33.333 0.00 0.00 41.47 1.40
3240 3385 6.964464 TCCCCATTGTACATACACAAAGTAT 58.036 36.000 0.00 0.00 44.20 2.12
3247 3392 3.250040 GCGAATCCCCATTGTACATACAC 59.750 47.826 0.00 0.00 35.64 2.90
3248 3393 3.135712 AGCGAATCCCCATTGTACATACA 59.864 43.478 0.00 0.00 0.00 2.29
3249 3394 3.740115 AGCGAATCCCCATTGTACATAC 58.260 45.455 0.00 0.00 0.00 2.39
3250 3395 3.646162 AGAGCGAATCCCCATTGTACATA 59.354 43.478 0.00 0.00 0.00 2.29
3251 3396 2.439507 AGAGCGAATCCCCATTGTACAT 59.560 45.455 0.00 0.00 0.00 2.29
3256 3401 1.678101 GGAAAGAGCGAATCCCCATTG 59.322 52.381 0.00 0.00 0.00 2.82
3269 3414 1.004862 GGGAACAGGGAAGGGAAAGAG 59.995 57.143 0.00 0.00 0.00 2.85
3296 3441 6.092092 TGATGGAAATGCAAGATTTTGTACG 58.908 36.000 0.00 0.00 36.65 3.67
3298 3443 7.546316 CACATGATGGAAATGCAAGATTTTGTA 59.454 33.333 0.00 0.00 36.65 2.41
3319 3464 9.410556 CTAATTCCCTTTTTGTTTAGTCACATG 57.589 33.333 0.00 0.00 0.00 3.21
3330 3475 2.176045 CCGGGCTAATTCCCTTTTTGT 58.824 47.619 0.00 0.00 44.30 2.83
3331 3476 2.176045 ACCGGGCTAATTCCCTTTTTG 58.824 47.619 6.32 0.00 44.30 2.44
3336 3481 0.702316 ACAAACCGGGCTAATTCCCT 59.298 50.000 6.32 0.00 44.30 4.20
3339 3484 6.930667 TCTTATTACAAACCGGGCTAATTC 57.069 37.500 6.32 0.00 0.00 2.17
3341 3486 5.298527 GCTTCTTATTACAAACCGGGCTAAT 59.701 40.000 6.32 3.55 0.00 1.73
3343 3488 4.080751 AGCTTCTTATTACAAACCGGGCTA 60.081 41.667 6.32 0.00 0.00 3.93
3344 3489 3.014623 GCTTCTTATTACAAACCGGGCT 58.985 45.455 6.32 0.00 0.00 5.19
3345 3490 3.014623 AGCTTCTTATTACAAACCGGGC 58.985 45.455 6.32 0.00 0.00 6.13
3346 3491 4.258543 TCAGCTTCTTATTACAAACCGGG 58.741 43.478 6.32 0.00 0.00 5.73
3347 3492 5.873179 TTCAGCTTCTTATTACAAACCGG 57.127 39.130 0.00 0.00 0.00 5.28
3348 3493 7.693951 CAGAATTCAGCTTCTTATTACAAACCG 59.306 37.037 8.44 0.00 33.18 4.44
3349 3494 8.730680 TCAGAATTCAGCTTCTTATTACAAACC 58.269 33.333 8.44 0.00 33.18 3.27
3356 3501 8.465201 GGACAAATCAGAATTCAGCTTCTTATT 58.535 33.333 8.44 0.00 32.89 1.40
3357 3502 7.613022 TGGACAAATCAGAATTCAGCTTCTTAT 59.387 33.333 8.44 0.00 33.18 1.73
3361 3506 5.048504 TGTGGACAAATCAGAATTCAGCTTC 60.049 40.000 8.44 0.00 0.00 3.86
3364 3509 4.217118 ACTGTGGACAAATCAGAATTCAGC 59.783 41.667 8.44 0.00 33.93 4.26
3404 3550 2.028930 ACGCTACAGAGAAAGGGTGAAG 60.029 50.000 0.00 0.00 37.49 3.02
3411 3557 9.762062 CAGTACATATATACGCTACAGAGAAAG 57.238 37.037 0.00 0.00 0.00 2.62
3453 3599 9.750783 ACCAGAATACTCCTATATACGTAACAT 57.249 33.333 0.00 0.00 0.00 2.71
3460 3606 8.789825 TTCTCGACCAGAATACTCCTATATAC 57.210 38.462 0.00 0.00 36.08 1.47
3461 3607 9.803507 TTTTCTCGACCAGAATACTCCTATATA 57.196 33.333 0.00 0.00 41.02 0.86
3462 3608 8.578151 GTTTTCTCGACCAGAATACTCCTATAT 58.422 37.037 0.00 0.00 41.02 0.86
3463 3609 7.558807 TGTTTTCTCGACCAGAATACTCCTATA 59.441 37.037 5.35 0.00 41.36 1.31
3464 3610 6.380274 TGTTTTCTCGACCAGAATACTCCTAT 59.620 38.462 5.35 0.00 41.36 2.57
3465 3611 5.713389 TGTTTTCTCGACCAGAATACTCCTA 59.287 40.000 5.35 0.00 41.36 2.94
3466 3612 4.527038 TGTTTTCTCGACCAGAATACTCCT 59.473 41.667 5.35 0.00 41.36 3.69
3467 3613 4.817517 TGTTTTCTCGACCAGAATACTCC 58.182 43.478 5.35 0.00 41.36 3.85
3468 3614 6.814146 AGAATGTTTTCTCGACCAGAATACTC 59.186 38.462 5.35 0.00 41.36 2.59
3469 3615 6.702329 AGAATGTTTTCTCGACCAGAATACT 58.298 36.000 5.35 0.00 41.36 2.12
3470 3616 6.969828 AGAATGTTTTCTCGACCAGAATAC 57.030 37.500 0.00 0.00 41.02 1.89
3504 3650 1.740380 GCTCGCCTGCTCACTAATTGA 60.740 52.381 0.00 0.00 0.00 2.57
3505 3651 0.654683 GCTCGCCTGCTCACTAATTG 59.345 55.000 0.00 0.00 0.00 2.32
3593 3745 2.124983 TGCCTGCTGCTCGAATCC 60.125 61.111 0.00 0.00 42.00 3.01
3608 3760 3.121030 CCGTGCCTGTACTGCTGC 61.121 66.667 8.96 0.00 0.00 5.25
3635 3787 2.165998 CTTCCTTTCTTTGGGCCTCTG 58.834 52.381 4.53 0.00 0.00 3.35
3642 3794 5.480073 TCTCTCTCTCTCTTCCTTTCTTTGG 59.520 44.000 0.00 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.