Multiple sequence alignment - TraesCS4A01G253100
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS4A01G253100
chr4A
100.000
3353
0
0
1
3353
565429040
565432392
0.000000e+00
6192.0
1
TraesCS4A01G253100
chr4D
94.489
1252
57
6
1028
2277
36843926
36842685
0.000000e+00
1919.0
2
TraesCS4A01G253100
chr4D
87.001
1077
69
36
2303
3353
36842579
36841548
0.000000e+00
1147.0
3
TraesCS4A01G253100
chr4D
87.210
993
123
4
2
991
280782464
280783455
0.000000e+00
1127.0
4
TraesCS4A01G253100
chr4D
85.650
446
45
14
2912
3352
36840466
36840035
5.100000e-123
451.0
5
TraesCS4A01G253100
chr5A
97.071
990
29
0
1
990
3046139
3045150
0.000000e+00
1668.0
6
TraesCS4A01G253100
chr1A
89.707
991
100
2
1
990
331274528
331273539
0.000000e+00
1264.0
7
TraesCS4A01G253100
chr1A
93.886
736
45
0
255
990
308905856
308906591
0.000000e+00
1110.0
8
TraesCS4A01G253100
chr1A
98.208
614
11
0
1
614
520794807
520794194
0.000000e+00
1074.0
9
TraesCS4A01G253100
chr1A
89.414
444
40
5
1163
1605
488619043
488619480
1.360000e-153
553.0
10
TraesCS4A01G253100
chr1A
94.154
325
19
0
1
325
308905554
308905878
2.320000e-136
496.0
11
TraesCS4A01G253100
chr7B
88.777
989
111
0
1
989
740027325
740028313
0.000000e+00
1212.0
12
TraesCS4A01G253100
chr7B
86.190
992
134
3
1
990
739553871
739552881
0.000000e+00
1070.0
13
TraesCS4A01G253100
chr1B
87.666
981
121
0
11
991
593506835
593507815
0.000000e+00
1142.0
14
TraesCS4A01G253100
chr1B
89.352
432
40
2
1174
1605
525909971
525909546
3.810000e-149
538.0
15
TraesCS4A01G253100
chr2A
90.937
662
60
0
1
662
655514911
655514250
0.000000e+00
891.0
16
TraesCS4A01G253100
chr4B
90.881
636
51
3
1728
2356
53863741
53863106
0.000000e+00
846.0
17
TraesCS4A01G253100
chr4B
87.387
444
45
6
2912
3352
53859642
53859207
1.800000e-137
499.0
18
TraesCS4A01G253100
chr4B
91.030
301
19
5
3056
3353
53861200
53860905
1.870000e-107
399.0
19
TraesCS4A01G253100
chr4B
89.680
281
23
5
1049
1324
53864402
53864123
1.480000e-93
353.0
20
TraesCS4A01G253100
chr4B
100.000
34
0
0
2357
2390
53862147
53862114
2.790000e-06
63.9
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS4A01G253100
chr4A
565429040
565432392
3352
False
6192.000000
6192
100.000000
1
3353
1
chr4A.!!$F1
3352
1
TraesCS4A01G253100
chr4D
36840035
36843926
3891
True
1172.333333
1919
89.046667
1028
3353
3
chr4D.!!$R1
2325
2
TraesCS4A01G253100
chr4D
280782464
280783455
991
False
1127.000000
1127
87.210000
2
991
1
chr4D.!!$F1
989
3
TraesCS4A01G253100
chr5A
3045150
3046139
989
True
1668.000000
1668
97.071000
1
990
1
chr5A.!!$R1
989
4
TraesCS4A01G253100
chr1A
331273539
331274528
989
True
1264.000000
1264
89.707000
1
990
1
chr1A.!!$R1
989
5
TraesCS4A01G253100
chr1A
520794194
520794807
613
True
1074.000000
1074
98.208000
1
614
1
chr1A.!!$R2
613
6
TraesCS4A01G253100
chr1A
308905554
308906591
1037
False
803.000000
1110
94.020000
1
990
2
chr1A.!!$F2
989
7
TraesCS4A01G253100
chr7B
740027325
740028313
988
False
1212.000000
1212
88.777000
1
989
1
chr7B.!!$F1
988
8
TraesCS4A01G253100
chr7B
739552881
739553871
990
True
1070.000000
1070
86.190000
1
990
1
chr7B.!!$R1
989
9
TraesCS4A01G253100
chr1B
593506835
593507815
980
False
1142.000000
1142
87.666000
11
991
1
chr1B.!!$F1
980
10
TraesCS4A01G253100
chr2A
655514250
655514911
661
True
891.000000
891
90.937000
1
662
1
chr2A.!!$R1
661
11
TraesCS4A01G253100
chr4B
53859207
53864402
5195
True
432.180000
846
91.795600
1049
3353
5
chr4B.!!$R1
2304
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
145
146
2.110006
GGAGCTTCCCATCTCCGC
59.890
66.667
0.0
0.0
39.43
5.54
F
998
1048
2.825836
CCAGCCATCCCGCAAGTC
60.826
66.667
0.0
0.0
0.00
3.01
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1015
1065
0.112412
TGGGGCTTCTTGGAACCTTC
59.888
55.0
0.0
0.0
0.0
3.46
R
2828
4609
0.250793
CCCAACCCGCATACACTGTA
59.749
55.0
0.0
0.0
0.0
2.74
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
145
146
2.110006
GGAGCTTCCCATCTCCGC
59.890
66.667
0.00
0.00
39.43
5.54
325
374
3.198853
GGTGGCTTCTCTTTGGATCTAGT
59.801
47.826
0.00
0.00
0.00
2.57
889
939
4.193334
CAGCACGATCCGGAGCGA
62.193
66.667
44.86
5.95
43.75
4.93
998
1048
2.825836
CCAGCCATCCCGCAAGTC
60.826
66.667
0.00
0.00
0.00
3.01
999
1049
3.197790
CAGCCATCCCGCAAGTCG
61.198
66.667
0.00
0.00
38.08
4.18
1013
1063
5.127371
CGCAAGTCGGAATAACTAAACTC
57.873
43.478
0.00
0.00
33.78
3.01
1014
1064
4.259292
CGCAAGTCGGAATAACTAAACTCG
60.259
45.833
0.00
0.00
33.78
4.18
1015
1065
4.032558
GCAAGTCGGAATAACTAAACTCGG
59.967
45.833
0.00
0.00
0.00
4.63
1016
1066
5.404946
CAAGTCGGAATAACTAAACTCGGA
58.595
41.667
0.00
0.00
0.00
4.55
1017
1067
5.649782
AGTCGGAATAACTAAACTCGGAA
57.350
39.130
0.00
0.00
0.00
4.30
1018
1068
5.648572
AGTCGGAATAACTAAACTCGGAAG
58.351
41.667
0.00
0.00
0.00
3.46
1019
1069
4.802563
GTCGGAATAACTAAACTCGGAAGG
59.197
45.833
0.00
0.00
0.00
3.46
1020
1070
4.463891
TCGGAATAACTAAACTCGGAAGGT
59.536
41.667
0.00
0.00
0.00
3.50
1021
1071
5.047092
TCGGAATAACTAAACTCGGAAGGTT
60.047
40.000
0.00
0.00
36.14
3.50
1022
1072
5.290400
CGGAATAACTAAACTCGGAAGGTTC
59.710
44.000
0.00
0.00
33.42
3.62
1023
1073
5.583854
GGAATAACTAAACTCGGAAGGTTCC
59.416
44.000
0.00
0.00
44.05
3.62
1061
1111
1.261619
CTCGACTGCTGTTGTTGGTTC
59.738
52.381
10.46
0.00
0.00
3.62
1068
1118
2.159254
TGCTGTTGTTGGTTCTCTTTGC
60.159
45.455
0.00
0.00
0.00
3.68
1091
1141
3.248363
TGTTGCTGAACAATCGAACTGAG
59.752
43.478
4.99
0.00
41.27
3.35
1141
1192
1.489230
ACTTTACCCCATCCGTCCATC
59.511
52.381
0.00
0.00
0.00
3.51
1200
1251
2.675348
GGAAGAACTGATGAAGGAAGCG
59.325
50.000
0.00
0.00
0.00
4.68
1269
1320
1.111277
TAAGCACGCTCCAGCATCTA
58.889
50.000
0.00
0.00
42.21
1.98
1297
1354
2.501222
CGACCAAGACCGACGACG
60.501
66.667
0.00
0.00
39.43
5.12
1298
1355
2.949106
GACCAAGACCGACGACGA
59.051
61.111
9.28
0.00
42.66
4.20
1299
1356
1.154263
GACCAAGACCGACGACGAG
60.154
63.158
9.28
1.47
42.66
4.18
1445
1502
0.983378
ATGGAGAAGGACCTTCCCCG
60.983
60.000
27.38
0.00
40.57
5.73
1511
1568
4.640855
CGTGGTGCTGGTCGTCGT
62.641
66.667
0.00
0.00
0.00
4.34
1541
1598
1.599047
CGGTGATCTGGTTCTGCCT
59.401
57.895
0.00
0.00
38.35
4.75
1542
1599
0.460987
CGGTGATCTGGTTCTGCCTC
60.461
60.000
0.00
0.00
38.35
4.70
1562
1619
4.637489
CGGAGGCGAGCGATGGAG
62.637
72.222
0.00
0.00
0.00
3.86
1695
1753
3.182572
CCGACGAAGAAACAAGAACAGAG
59.817
47.826
0.00
0.00
0.00
3.35
1722
1780
0.764890
TGGAGGGACACAACTGGAAG
59.235
55.000
0.00
0.00
42.29
3.46
1726
1784
2.368875
GAGGGACACAACTGGAAGAGAA
59.631
50.000
0.00
0.00
37.43
2.87
1771
2136
3.580022
TGGCAGTCATCGATTCCAGATAT
59.420
43.478
0.00
0.00
0.00
1.63
1813
2178
2.391879
GCAAGTTCTACTTCGACGTGT
58.608
47.619
4.57
0.00
36.03
4.49
1816
2181
1.538950
AGTTCTACTTCGACGTGTCCC
59.461
52.381
4.57
0.00
0.00
4.46
1830
2195
4.377760
TCCCCCTCGAAGCTCGGT
62.378
66.667
5.87
0.00
40.88
4.69
1885
2250
3.628646
ATGGACACCAAGGGAGCGC
62.629
63.158
0.00
0.00
36.95
5.92
1928
2293
2.514824
GGCGTTCCCTCATCTGGC
60.515
66.667
0.00
0.00
0.00
4.85
1972
2337
3.554129
CCTGTTCGTCATCGCCCATAATA
60.554
47.826
0.00
0.00
36.96
0.98
1973
2338
3.649073
TGTTCGTCATCGCCCATAATAG
58.351
45.455
0.00
0.00
36.96
1.73
2043
2411
0.389391
CCAAGGTGGATCGCGTCTAT
59.611
55.000
5.77
0.00
40.96
1.98
2046
2414
1.621992
AGGTGGATCGCGTCTATGAT
58.378
50.000
5.77
0.00
0.00
2.45
2141
2510
2.579873
TGTCTACTATCTGGGCCGTAC
58.420
52.381
0.00
0.00
0.00
3.67
2180
2549
3.110178
GCCGGAGACAAACGTCGG
61.110
66.667
5.05
5.32
38.51
4.79
2344
2799
0.937304
CCGGGATATGTTTGTGCTCG
59.063
55.000
0.00
0.00
0.00
5.03
2353
2808
7.387948
GGGATATGTTTGTGCTCGTCTAATTAT
59.612
37.037
0.00
0.00
0.00
1.28
2390
3803
8.980481
TCCCCTTTCTTCAAATCAGTATATTC
57.020
34.615
0.00
0.00
0.00
1.75
2391
3804
7.998964
TCCCCTTTCTTCAAATCAGTATATTCC
59.001
37.037
0.00
0.00
0.00
3.01
2392
3805
7.041098
CCCCTTTCTTCAAATCAGTATATTCCG
60.041
40.741
0.00
0.00
0.00
4.30
2393
3806
7.041098
CCCTTTCTTCAAATCAGTATATTCCGG
60.041
40.741
0.00
0.00
0.00
5.14
2394
3807
7.041098
CCTTTCTTCAAATCAGTATATTCCGGG
60.041
40.741
0.00
0.00
0.00
5.73
2395
3808
6.740944
TCTTCAAATCAGTATATTCCGGGA
57.259
37.500
0.00
0.00
0.00
5.14
2397
3810
8.430573
TCTTCAAATCAGTATATTCCGGGATA
57.569
34.615
4.49
4.49
0.00
2.59
2399
3812
9.102757
CTTCAAATCAGTATATTCCGGGATATG
57.897
37.037
23.53
10.18
0.00
1.78
2403
3816
8.792830
AATCAGTATATTCCGGGATATGTTTG
57.207
34.615
23.53
17.44
0.00
2.93
2429
3852
7.594758
GTGCACATTGAGTTTAGCTTTCATTTA
59.405
33.333
13.17
0.00
0.00
1.40
2456
4218
4.862641
TTATTTCTGAGGGAAAGGGGAG
57.137
45.455
0.00
0.00
45.61
4.30
2457
4219
2.133858
TTTCTGAGGGAAAGGGGAGT
57.866
50.000
0.00
0.00
38.81
3.85
2458
4220
2.133858
TTCTGAGGGAAAGGGGAGTT
57.866
50.000
0.00
0.00
0.00
3.01
2459
4221
3.285290
TTCTGAGGGAAAGGGGAGTTA
57.715
47.619
0.00
0.00
0.00
2.24
2466
4228
3.587951
AGGGAAAGGGGAGTTAGAGTTTC
59.412
47.826
0.00
0.00
0.00
2.78
2515
4278
4.029520
AGACAGTTCTACCATGATCTGCT
58.970
43.478
0.00
0.00
37.31
4.24
2522
4285
2.906691
ACCATGATCTGCTACTCTGC
57.093
50.000
0.00
0.00
0.00
4.26
2524
4287
2.770802
ACCATGATCTGCTACTCTGCTT
59.229
45.455
0.00
0.00
0.00
3.91
2555
4318
6.873605
CCTGGAAATTTTCATAGGAACAAACC
59.126
38.462
19.30
0.00
37.60
3.27
2563
4333
1.672529
TAGGAACAAACCCCCTACCC
58.327
55.000
0.00
0.00
0.00
3.69
2576
4346
2.360423
CCCCTACCCACCATAAGACTCT
60.360
54.545
0.00
0.00
0.00
3.24
2607
4377
9.512588
CTCTAAAATAAGATGACCATAAGGCAT
57.487
33.333
0.00
0.00
39.06
4.40
2611
4381
7.693969
AATAAGATGACCATAAGGCATAAGC
57.306
36.000
0.00
0.00
39.06
3.09
2633
4403
2.066393
CCGATCCAGGGCCTCAGAA
61.066
63.158
0.95
0.00
0.00
3.02
2634
4404
1.445095
CGATCCAGGGCCTCAGAAG
59.555
63.158
0.95
0.00
0.00
2.85
2636
4406
1.433121
GATCCAGGGCCTCAGAAGAT
58.567
55.000
0.95
0.70
0.00
2.40
2637
4407
1.347378
GATCCAGGGCCTCAGAAGATC
59.653
57.143
0.95
7.16
0.00
2.75
2638
4408
1.045350
TCCAGGGCCTCAGAAGATCG
61.045
60.000
0.95
0.00
0.00
3.69
2639
4409
1.445095
CAGGGCCTCAGAAGATCGG
59.555
63.158
0.95
0.00
0.00
4.18
2641
4411
2.066999
GGGCCTCAGAAGATCGGGT
61.067
63.158
0.84
0.00
0.00
5.28
2642
4412
1.144936
GGCCTCAGAAGATCGGGTG
59.855
63.158
0.00
0.00
0.00
4.61
2645
4415
0.103937
CCTCAGAAGATCGGGTGAGC
59.896
60.000
13.04
0.00
35.99
4.26
2646
4416
0.820226
CTCAGAAGATCGGGTGAGCA
59.180
55.000
7.91
0.00
31.29
4.26
2647
4417
0.532573
TCAGAAGATCGGGTGAGCAC
59.467
55.000
0.00
0.00
31.29
4.40
2648
4418
0.247460
CAGAAGATCGGGTGAGCACA
59.753
55.000
2.75
0.00
31.29
4.57
2649
4419
1.134580
CAGAAGATCGGGTGAGCACAT
60.135
52.381
2.75
0.00
31.29
3.21
2650
4420
1.137872
AGAAGATCGGGTGAGCACATC
59.862
52.381
2.75
0.00
31.29
3.06
2651
4421
0.179100
AAGATCGGGTGAGCACATCG
60.179
55.000
2.75
6.18
31.29
3.84
2652
4422
1.141881
GATCGGGTGAGCACATCGT
59.858
57.895
12.64
4.17
33.52
3.73
2653
4423
0.384309
GATCGGGTGAGCACATCGTA
59.616
55.000
12.64
4.15
33.52
3.43
2654
4424
0.385751
ATCGGGTGAGCACATCGTAG
59.614
55.000
12.64
0.00
33.52
3.51
2655
4425
1.878522
CGGGTGAGCACATCGTAGC
60.879
63.158
2.75
0.00
0.00
3.58
2670
4440
2.094700
TCGTAGCGCTGTTGAGAAATCT
60.095
45.455
22.90
0.00
0.00
2.40
2680
4450
5.964168
GCTGTTGAGAAATCTGATTGAATCG
59.036
40.000
3.22
0.00
0.00
3.34
2693
4471
0.249955
TGAATCGTGCATGGAGCTCA
59.750
50.000
17.19
1.87
45.94
4.26
2740
4518
2.919666
AAATGACGGTATGCAGCAAC
57.080
45.000
0.00
0.00
0.00
4.17
2753
4531
0.739462
CAGCAACGATTACGCTCCCA
60.739
55.000
0.00
0.00
43.96
4.37
2758
4536
2.440539
ACGATTACGCTCCCATCATC
57.559
50.000
0.00
0.00
43.96
2.92
2785
4566
2.044806
ATCATACCTGACCCTGCCGC
62.045
60.000
0.00
0.00
33.22
6.53
2805
4586
1.077644
CCGTCCGAGGAGAAGGAGA
60.078
63.158
0.00
0.00
37.58
3.71
2809
4590
1.407258
GTCCGAGGAGAAGGAGACATG
59.593
57.143
0.00
0.00
37.18
3.21
2828
4609
2.733956
TGTTTTTCTGAGGGCACAACT
58.266
42.857
0.00
0.00
0.00
3.16
2832
4613
2.839486
TTCTGAGGGCACAACTACAG
57.161
50.000
0.00
0.00
0.00
2.74
2839
4620
1.737793
GGGCACAACTACAGTGTATGC
59.262
52.381
15.28
15.28
39.17
3.14
2842
4623
1.999735
CACAACTACAGTGTATGCGGG
59.000
52.381
2.82
0.00
32.44
6.13
2894
4675
8.267894
TCTATTTTTCCCTGTCCTGAATTCTAG
58.732
37.037
7.05
2.75
0.00
2.43
2901
4682
6.903534
TCCCTGTCCTGAATTCTAGAACTTAT
59.096
38.462
7.48
0.00
0.00
1.73
2992
4773
5.244755
TGAGATGACAATGATGAAACGGAA
58.755
37.500
0.00
0.00
0.00
4.30
2993
4774
5.122239
TGAGATGACAATGATGAAACGGAAC
59.878
40.000
0.00
0.00
0.00
3.62
3017
4798
1.737838
TGCACCAGATTTAAGAGGCG
58.262
50.000
0.00
0.00
0.00
5.52
3022
4803
2.832129
ACCAGATTTAAGAGGCGAGTGA
59.168
45.455
0.00
0.00
0.00
3.41
3068
4849
1.002773
TCCTTGAGAACTTAACCGGGC
59.997
52.381
6.32
0.00
0.00
6.13
3131
4912
2.894387
GGCGTGCTCCTCTCATGC
60.894
66.667
0.00
0.00
43.66
4.06
3239
5020
3.653344
GAGCCTTCCATGAAACCAAAAC
58.347
45.455
0.00
0.00
0.00
2.43
3312
5093
8.087982
TGAGAAAACAGCAGAACATAGTTAAG
57.912
34.615
0.00
0.00
0.00
1.85
3341
5122
0.109226
GGCGTAGAAGCTCTTGTCGT
60.109
55.000
0.00
0.00
37.29
4.34
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
145
146
0.669318
TAACGTCTGGAAGCGCAAGG
60.669
55.000
11.47
0.00
37.05
3.61
325
374
2.009186
ATCCCCCACAAATCCCCTTA
57.991
50.000
0.00
0.00
0.00
2.69
889
939
2.037367
TCTGGCTGCGTAGGGAGT
59.963
61.111
1.76
0.00
33.52
3.85
992
1042
4.032558
CCGAGTTTAGTTATTCCGACTTGC
59.967
45.833
0.00
0.00
0.00
4.01
993
1043
5.404946
TCCGAGTTTAGTTATTCCGACTTG
58.595
41.667
0.00
0.00
0.00
3.16
994
1044
5.649782
TCCGAGTTTAGTTATTCCGACTT
57.350
39.130
0.00
0.00
0.00
3.01
995
1045
5.393896
CCTTCCGAGTTTAGTTATTCCGACT
60.394
44.000
0.00
0.00
0.00
4.18
996
1046
4.802563
CCTTCCGAGTTTAGTTATTCCGAC
59.197
45.833
0.00
0.00
0.00
4.79
997
1047
4.463891
ACCTTCCGAGTTTAGTTATTCCGA
59.536
41.667
0.00
0.00
0.00
4.55
998
1048
4.752146
ACCTTCCGAGTTTAGTTATTCCG
58.248
43.478
0.00
0.00
0.00
4.30
999
1049
5.583854
GGAACCTTCCGAGTTTAGTTATTCC
59.416
44.000
0.00
0.00
37.65
3.01
1000
1050
6.659361
GGAACCTTCCGAGTTTAGTTATTC
57.341
41.667
0.00
0.00
37.65
1.75
1015
1065
0.112412
TGGGGCTTCTTGGAACCTTC
59.888
55.000
0.00
0.00
0.00
3.46
1016
1066
0.113190
CTGGGGCTTCTTGGAACCTT
59.887
55.000
0.00
0.00
0.00
3.50
1017
1067
1.770324
CTGGGGCTTCTTGGAACCT
59.230
57.895
0.00
0.00
0.00
3.50
1018
1068
1.979155
GCTGGGGCTTCTTGGAACC
60.979
63.158
0.00
0.00
35.22
3.62
1019
1069
3.686760
GCTGGGGCTTCTTGGAAC
58.313
61.111
0.00
0.00
35.22
3.62
1040
1090
0.464036
ACCAACAACAGCAGTCGAGA
59.536
50.000
0.00
0.00
0.00
4.04
1041
1091
1.261619
GAACCAACAACAGCAGTCGAG
59.738
52.381
0.00
0.00
0.00
4.04
1042
1092
1.134521
AGAACCAACAACAGCAGTCGA
60.135
47.619
0.00
0.00
0.00
4.20
1044
1094
2.565841
AGAGAACCAACAACAGCAGTC
58.434
47.619
0.00
0.00
0.00
3.51
1045
1095
2.717639
AGAGAACCAACAACAGCAGT
57.282
45.000
0.00
0.00
0.00
4.40
1061
1111
3.425577
TTGTTCAGCAACAGCAAAGAG
57.574
42.857
0.00
0.00
43.54
2.85
1068
1118
3.248363
TCAGTTCGATTGTTCAGCAACAG
59.752
43.478
0.00
0.00
43.54
3.16
1091
1141
6.533012
TGAGATCGATCTTGATTCTGTTCAAC
59.467
38.462
27.90
11.03
37.25
3.18
1269
1320
3.927163
CTTGGTCGCCGCCGTTAGT
62.927
63.158
0.00
0.00
35.54
2.24
1311
1368
1.444553
CCAGCACCTCGTCGTCTTC
60.445
63.158
0.00
0.00
0.00
2.87
1436
1493
2.411765
CTTGCAGTTCCGGGGAAGGT
62.412
60.000
0.00
0.00
34.49
3.50
1440
1497
2.429930
CACTTGCAGTTCCGGGGA
59.570
61.111
0.00
0.00
0.00
4.81
1445
1502
1.900498
AGCAGGCACTTGCAGTTCC
60.900
57.895
7.53
0.00
44.36
3.62
1526
1583
0.532573
GACGAGGCAGAACCAGATCA
59.467
55.000
0.00
0.00
43.14
2.92
1556
1613
0.528684
GTACTCGTGCCTGCTCCATC
60.529
60.000
0.00
0.00
0.00
3.51
1562
1619
0.592754
GATCTCGTACTCGTGCCTGC
60.593
60.000
0.00
0.00
38.33
4.85
1695
1753
3.008049
AGTTGTGTCCCTCCAAGATGTAC
59.992
47.826
0.00
0.00
0.00
2.90
1722
1780
4.444720
CCGTCGCTTGGTATTCTTATTCTC
59.555
45.833
0.00
0.00
0.00
2.87
1726
1784
2.805657
GCCCGTCGCTTGGTATTCTTAT
60.806
50.000
0.00
0.00
0.00
1.73
1788
2153
1.068055
TCGAAGTAGAACTTGCCGTCC
60.068
52.381
0.00
0.00
38.80
4.79
1813
2178
4.377760
ACCGAGCTTCGAGGGGGA
62.378
66.667
7.07
0.00
43.74
4.81
1816
2181
2.182030
GACACCGAGCTTCGAGGG
59.818
66.667
7.07
2.22
43.74
4.30
1830
2195
1.677966
CGGGAGGAAGTCGAGGACA
60.678
63.158
0.00
0.00
34.60
4.02
1885
2250
0.877649
CAGGAATCCCATGCGACTCG
60.878
60.000
0.00
0.00
33.88
4.18
2075
2443
1.063649
GCAGAATACGACGCCGAGA
59.936
57.895
0.00
0.00
39.50
4.04
2077
2445
0.869880
CATGCAGAATACGACGCCGA
60.870
55.000
0.00
0.00
39.50
5.54
2116
2484
3.572682
CGGCCCAGATAGTAGACATTACA
59.427
47.826
0.00
0.00
0.00
2.41
2141
2510
0.941463
AGAACACGTTGAGCAGCTCG
60.941
55.000
17.81
9.14
32.35
5.03
2180
2549
1.153369
TATGCAGTTGGAGCGAGGC
60.153
57.895
0.00
0.00
33.85
4.70
2390
3803
1.458398
TGTGCACAAACATATCCCGG
58.542
50.000
19.28
0.00
0.00
5.73
2391
3804
3.128415
TCAATGTGCACAAACATATCCCG
59.872
43.478
25.72
3.11
39.89
5.14
2392
3805
4.158394
ACTCAATGTGCACAAACATATCCC
59.842
41.667
25.72
0.00
39.89
3.85
2393
3806
5.314923
ACTCAATGTGCACAAACATATCC
57.685
39.130
25.72
0.00
39.89
2.59
2394
3807
7.008628
GCTAAACTCAATGTGCACAAACATATC
59.991
37.037
25.72
3.56
39.89
1.63
2395
3808
6.808212
GCTAAACTCAATGTGCACAAACATAT
59.192
34.615
25.72
10.27
39.89
1.78
2397
3810
4.984161
GCTAAACTCAATGTGCACAAACAT
59.016
37.500
25.72
3.79
42.62
2.71
2399
3812
4.610945
AGCTAAACTCAATGTGCACAAAC
58.389
39.130
25.72
0.00
0.00
2.93
2403
3816
4.858935
TGAAAGCTAAACTCAATGTGCAC
58.141
39.130
10.75
10.75
0.00
4.57
2429
3852
8.351414
TCCCCTTTCCCTCAGAAATAAATAAAT
58.649
33.333
0.00
0.00
43.50
1.40
2433
4195
5.256389
ACTCCCCTTTCCCTCAGAAATAAAT
59.744
40.000
0.00
0.00
43.50
1.40
2441
4203
2.769095
CTCTAACTCCCCTTTCCCTCAG
59.231
54.545
0.00
0.00
0.00
3.35
2444
4206
3.293215
AACTCTAACTCCCCTTTCCCT
57.707
47.619
0.00
0.00
0.00
4.20
2445
4207
3.329814
TGAAACTCTAACTCCCCTTTCCC
59.670
47.826
0.00
0.00
0.00
3.97
2446
4208
4.635699
TGAAACTCTAACTCCCCTTTCC
57.364
45.455
0.00
0.00
0.00
3.13
2447
4209
6.372937
CAGAATGAAACTCTAACTCCCCTTTC
59.627
42.308
0.00
0.00
39.69
2.62
2448
4210
6.044404
TCAGAATGAAACTCTAACTCCCCTTT
59.956
38.462
0.00
0.00
45.97
3.11
2449
4211
5.548056
TCAGAATGAAACTCTAACTCCCCTT
59.452
40.000
0.00
0.00
45.97
3.95
2466
4228
4.913924
GCACAGCTTGTTAACTTCAGAATG
59.086
41.667
7.22
5.87
37.54
2.67
2515
4278
0.984230
CCAGGGACCAAAGCAGAGTA
59.016
55.000
0.00
0.00
0.00
2.59
2522
4285
4.953940
TGAAAATTTCCAGGGACCAAAG
57.046
40.909
3.00
0.00
0.00
2.77
2524
4287
5.022787
CCTATGAAAATTTCCAGGGACCAA
58.977
41.667
12.93
0.00
30.94
3.67
2555
4318
2.047830
GAGTCTTATGGTGGGTAGGGG
58.952
57.143
0.00
0.00
0.00
4.79
2563
4333
9.829507
ATTTTAGAGATCAAGAGTCTTATGGTG
57.170
33.333
4.74
0.00
0.00
4.17
2604
4374
0.947244
CTGGATCGGTTGGCTTATGC
59.053
55.000
0.00
0.00
38.76
3.14
2607
4377
1.912220
CCCTGGATCGGTTGGCTTA
59.088
57.895
0.00
0.00
0.00
3.09
2608
4378
2.677228
CCCTGGATCGGTTGGCTT
59.323
61.111
0.00
0.00
0.00
4.35
2611
4381
3.406595
GAGGCCCTGGATCGGTTGG
62.407
68.421
0.00
0.00
0.00
3.77
2612
4382
2.190578
GAGGCCCTGGATCGGTTG
59.809
66.667
0.00
0.00
0.00
3.77
2633
4403
1.323271
ACGATGTGCTCACCCGATCT
61.323
55.000
16.04
0.00
33.05
2.75
2634
4404
0.384309
TACGATGTGCTCACCCGATC
59.616
55.000
16.04
4.53
33.05
3.69
2636
4406
1.807226
CTACGATGTGCTCACCCGA
59.193
57.895
16.04
3.34
33.05
5.14
2637
4407
1.878522
GCTACGATGTGCTCACCCG
60.879
63.158
9.81
9.81
34.27
5.28
2638
4408
1.878522
CGCTACGATGTGCTCACCC
60.879
63.158
0.00
0.00
0.00
4.61
2639
4409
2.517450
GCGCTACGATGTGCTCACC
61.517
63.158
0.00
0.00
40.01
4.02
2648
4418
2.363788
TTTCTCAACAGCGCTACGAT
57.636
45.000
10.99
0.00
0.00
3.73
2649
4419
2.094700
AGATTTCTCAACAGCGCTACGA
60.095
45.455
10.99
5.96
0.00
3.43
2650
4420
2.028523
CAGATTTCTCAACAGCGCTACG
59.971
50.000
10.99
0.00
0.00
3.51
2651
4421
3.254060
TCAGATTTCTCAACAGCGCTAC
58.746
45.455
10.99
0.00
0.00
3.58
2652
4422
3.592898
TCAGATTTCTCAACAGCGCTA
57.407
42.857
10.99
0.00
0.00
4.26
2653
4423
2.462456
TCAGATTTCTCAACAGCGCT
57.538
45.000
2.64
2.64
0.00
5.92
2654
4424
3.125829
TCAATCAGATTTCTCAACAGCGC
59.874
43.478
0.00
0.00
0.00
5.92
2655
4425
4.934075
TCAATCAGATTTCTCAACAGCG
57.066
40.909
0.00
0.00
0.00
5.18
2670
4440
1.672363
GCTCCATGCACGATTCAATCA
59.328
47.619
0.00
0.00
42.31
2.57
2680
4450
0.675837
TGAAGCTGAGCTCCATGCAC
60.676
55.000
7.72
15.14
45.94
4.57
2709
4487
8.178964
TGCATACCGTCATTTATTCTTTTGTAC
58.821
33.333
0.00
0.00
0.00
2.90
2740
4518
1.673033
GGGATGATGGGAGCGTAATCG
60.673
57.143
0.00
0.00
40.37
3.34
2753
4531
7.127955
GGGTCAGGTATGATATTAAGGGATGAT
59.872
40.741
0.00
0.00
37.87
2.45
2758
4536
5.571658
GCAGGGTCAGGTATGATATTAAGGG
60.572
48.000
0.00
0.00
37.87
3.95
2785
4566
3.148279
CCTTCTCCTCGGACGGGG
61.148
72.222
3.76
3.76
37.02
5.73
2805
4586
2.665165
TGTGCCCTCAGAAAAACATGT
58.335
42.857
0.00
0.00
0.00
3.21
2809
4590
3.630312
TGTAGTTGTGCCCTCAGAAAAAC
59.370
43.478
0.00
0.00
0.00
2.43
2828
4609
0.250793
CCCAACCCGCATACACTGTA
59.749
55.000
0.00
0.00
0.00
2.74
2832
4613
1.470051
AATTCCCAACCCGCATACAC
58.530
50.000
0.00
0.00
0.00
2.90
2839
4620
0.823460
CATCCCAAATTCCCAACCCG
59.177
55.000
0.00
0.00
0.00
5.28
2842
4623
5.948742
TTATTCCATCCCAAATTCCCAAC
57.051
39.130
0.00
0.00
0.00
3.77
2931
4712
9.234384
CAAATCTTTGCTTGATCTGATATTGTC
57.766
33.333
0.00
0.00
0.00
3.18
2933
4714
9.020813
CACAAATCTTTGCTTGATCTGATATTG
57.979
33.333
2.63
0.00
41.79
1.90
2992
4773
4.520492
CCTCTTAAATCTGGTGCAACTTGT
59.480
41.667
2.04
0.00
36.74
3.16
2993
4774
4.616835
GCCTCTTAAATCTGGTGCAACTTG
60.617
45.833
2.04
0.00
36.74
3.16
3112
4893
1.521010
CATGAGAGGAGCACGCCAG
60.521
63.158
0.00
0.00
0.00
4.85
3131
4912
5.986135
ACAAGAACAAGTAGCTAGTGTTGAG
59.014
40.000
21.70
14.79
35.67
3.02
3239
5020
9.846248
CTTTTACAAGAGGAATTACAAGGATTG
57.154
33.333
0.00
0.00
41.72
2.67
3312
5093
1.897398
CTTCTACGCCGTGGTTGCAC
61.897
60.000
0.00
0.00
0.00
4.57
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.