Multiple sequence alignment - TraesCS4A01G252900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G252900 chr4A 100.000 5532 0 0 1 5532 565301085 565306616 0.000000e+00 10216.0
1 TraesCS4A01G252900 chr4A 81.958 521 66 22 3984 4488 565043058 565043566 3.080000e-112 416.0
2 TraesCS4A01G252900 chr4A 80.516 426 60 11 4081 4488 564974051 564974471 6.960000e-79 305.0
3 TraesCS4A01G252900 chr4D 92.527 2275 117 33 1707 3956 37052047 37049801 0.000000e+00 3210.0
4 TraesCS4A01G252900 chr4D 92.490 1518 60 19 4041 5532 37049800 37048311 0.000000e+00 2122.0
5 TraesCS4A01G252900 chr4D 89.936 785 65 8 1 782 37055791 37055018 0.000000e+00 1000.0
6 TraesCS4A01G252900 chr4D 89.376 433 24 10 403 823 37053138 37052716 4.910000e-145 525.0
7 TraesCS4A01G252900 chr4D 85.680 419 41 15 4081 4488 37135402 37134992 1.840000e-114 424.0
8 TraesCS4A01G252900 chr4D 92.115 279 15 4 883 1160 37052713 37052441 2.420000e-103 387.0
9 TraesCS4A01G252900 chr4D 77.047 745 115 28 1819 2547 37262467 37261763 1.450000e-100 377.0
10 TraesCS4A01G252900 chr4D 80.760 421 66 9 4081 4488 37253589 37253171 1.160000e-81 315.0
11 TraesCS4A01G252900 chr4D 78.238 193 13 13 1160 1346 37052410 37052241 4.560000e-16 97.1
12 TraesCS4A01G252900 chr4B 94.021 1338 67 9 1632 2959 54039371 54038037 0.000000e+00 2015.0
13 TraesCS4A01G252900 chr4B 88.656 811 64 13 3155 3956 54037888 54037097 0.000000e+00 963.0
14 TraesCS4A01G252900 chr4B 84.940 996 91 23 4041 4981 54037096 54036105 0.000000e+00 953.0
15 TraesCS4A01G252900 chr4B 94.781 594 19 9 4946 5532 54036094 54035506 0.000000e+00 915.0
16 TraesCS4A01G252900 chr4B 81.266 1153 158 39 1632 2764 54349497 54348383 0.000000e+00 880.0
17 TraesCS4A01G252900 chr4B 84.892 417 48 12 4081 4488 54138362 54137952 1.860000e-109 407.0
18 TraesCS4A01G252900 chr4B 86.942 291 21 9 883 1160 54041428 54041142 1.500000e-80 311.0
19 TraesCS4A01G252900 chr4B 80.523 421 67 10 4081 4488 54346682 54346264 5.380000e-80 309.0
20 TraesCS4A01G252900 chr4B 81.957 327 24 9 1260 1579 54349796 54349498 1.540000e-60 244.0
21 TraesCS4A01G252900 chr4B 81.288 326 25 10 1260 1577 54041062 54040765 1.200000e-56 231.0
22 TraesCS4A01G252900 chr4B 96.552 58 2 0 2 59 54041499 54041442 4.560000e-16 97.1
23 TraesCS4A01G252900 chr4B 96.296 54 2 0 2958 3011 54037933 54037880 7.630000e-14 89.8
24 TraesCS4A01G252900 chr7B 93.878 245 10 4 581 823 655683548 655683789 1.130000e-96 364.0
25 TraesCS4A01G252900 chr7B 92.000 150 12 0 3015 3164 155471172 155471321 1.560000e-50 211.0
26 TraesCS4A01G252900 chr7D 93.919 148 9 0 3015 3162 156796844 156796991 2.010000e-54 224.0
27 TraesCS4A01G252900 chr6A 90.968 155 14 0 3015 3169 532026782 532026936 5.620000e-50 209.0
28 TraesCS4A01G252900 chr6D 90.909 154 14 0 3016 3169 386931496 386931649 2.020000e-49 207.0
29 TraesCS4A01G252900 chr7A 92.414 145 10 1 3021 3164 201987013 201987157 7.260000e-49 206.0
30 TraesCS4A01G252900 chr5B 91.216 148 13 0 3015 3162 98663183 98663330 9.400000e-48 202.0
31 TraesCS4A01G252900 chr3D 91.216 148 11 1 3015 3162 370117237 370117382 3.380000e-47 200.0
32 TraesCS4A01G252900 chr3B 89.677 155 14 2 3009 3162 245935460 245935613 4.370000e-46 196.0
33 TraesCS4A01G252900 chr6B 81.564 179 22 11 2433 2607 417850639 417850468 2.690000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G252900 chr4A 565301085 565306616 5531 False 10216.000000 10216 100.000000 1 5532 1 chr4A.!!$F3 5531
1 TraesCS4A01G252900 chr4A 565043058 565043566 508 False 416.000000 416 81.958000 3984 4488 1 chr4A.!!$F2 504
2 TraesCS4A01G252900 chr4D 37048311 37055791 7480 True 1223.516667 3210 89.113667 1 5532 6 chr4D.!!$R4 5531
3 TraesCS4A01G252900 chr4D 37261763 37262467 704 True 377.000000 377 77.047000 1819 2547 1 chr4D.!!$R3 728
4 TraesCS4A01G252900 chr4B 54035506 54041499 5993 True 696.862500 2015 90.434500 2 5532 8 chr4B.!!$R2 5530
5 TraesCS4A01G252900 chr4B 54346264 54349796 3532 True 477.666667 880 81.248667 1260 4488 3 chr4B.!!$R3 3228

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
839 3103 0.032117 TCCCACGGTCATCTCCATCT 60.032 55.000 0.00 0.00 0.00 2.90 F
1593 5350 0.032952 TTTGCCAGACGTTCGCTAGT 59.967 50.000 0.00 0.00 0.00 2.57 F
1595 5352 0.883153 TGCCAGACGTTCGCTAGTTA 59.117 50.000 0.00 0.00 0.00 2.24 F
2641 6500 1.153667 CTCCTTGCAGAGCGTCTCC 60.154 63.158 3.66 0.00 0.00 3.71 F
3364 7796 1.338973 CCCAATGCACATATGTGGCTC 59.661 52.381 31.63 18.51 45.72 4.70 F
3963 8449 0.590682 TGCAATGCTGTTGTACGGTG 59.409 50.000 6.82 0.00 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1743 5581 0.964358 GAATGCTCTGCCTTGGCTGT 60.964 55.000 13.18 0.0 0.00 4.40 R
3364 7796 1.123928 ATGGTAGGCGAGGAAAGAGG 58.876 55.000 0.00 0.0 0.00 3.69 R
3407 7839 1.402107 AACAAAGCAGCCACCAAGGG 61.402 55.000 0.00 0.0 38.09 3.95 R
3856 8305 0.847373 TAACTGCAACCAACCCAGGA 59.153 50.000 0.00 0.0 0.00 3.86 R
4453 8984 0.859232 GCATACCGGCAGTAACATCG 59.141 55.000 0.00 0.0 33.70 3.84 R
5389 10021 1.002011 GGAGCGCTTCTTCCCCTTT 60.002 57.895 13.26 0.0 0.00 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 0.992431 AATGAGAGGGAGCATGGCCT 60.992 55.000 3.32 0.00 0.00 5.19
89 90 2.093816 AGATGCATGAGAAGTCTCGCAA 60.094 45.455 2.46 0.00 45.72 4.85
90 91 2.391616 TGCATGAGAAGTCTCGCAAT 57.608 45.000 0.00 0.00 45.72 3.56
95 96 4.272018 GCATGAGAAGTCTCGCAATATGTT 59.728 41.667 0.00 0.00 45.72 2.71
145 146 0.578683 GTCATGTCATGTCGATGCCG 59.421 55.000 12.54 0.00 37.07 5.69
165 166 3.493699 CCGTCTAATAAATGCCCCGAAGA 60.494 47.826 0.00 0.00 0.00 2.87
167 168 4.025145 CGTCTAATAAATGCCCCGAAGAAC 60.025 45.833 0.00 0.00 0.00 3.01
171 172 2.514458 AAATGCCCCGAAGAACATCT 57.486 45.000 0.00 0.00 0.00 2.90
172 173 1.755179 AATGCCCCGAAGAACATCTG 58.245 50.000 0.00 0.00 0.00 2.90
173 174 0.749454 ATGCCCCGAAGAACATCTGC 60.749 55.000 0.00 0.00 0.00 4.26
176 177 0.745845 CCCCGAAGAACATCTGCAGG 60.746 60.000 15.13 0.36 0.00 4.85
217 218 5.659048 AAACAGAGCAAATATACGCTAGC 57.341 39.130 4.06 4.06 38.99 3.42
230 231 0.249031 CGCTAGCCATGTCATGTCGA 60.249 55.000 9.66 0.00 0.00 4.20
233 234 1.797046 CTAGCCATGTCATGTCGATGC 59.203 52.381 11.84 7.38 0.00 3.91
239 240 3.493176 CCATGTCATGTCGATGCCTTCTA 60.493 47.826 11.84 0.00 0.00 2.10
285 286 1.523758 GGATGGTTCTGCGTTTCACT 58.476 50.000 0.00 0.00 0.00 3.41
321 322 6.761731 TGTACAAAATTGCAAAAGGATTCG 57.238 33.333 1.71 0.00 0.00 3.34
326 327 3.940209 ATTGCAAAAGGATTCGCTCAA 57.060 38.095 1.71 0.00 0.00 3.02
340 341 2.731451 TCGCTCAAACAGAAACATCGAG 59.269 45.455 0.00 0.00 0.00 4.04
352 353 0.179018 ACATCGAGGGGCCTATTTGC 60.179 55.000 0.84 0.00 0.00 3.68
380 381 8.674607 AGATTTTAAAAGCGTGATAGTAAAGGG 58.325 33.333 10.33 0.00 0.00 3.95
381 382 7.982761 TTTTAAAAGCGTGATAGTAAAGGGA 57.017 32.000 0.00 0.00 0.00 4.20
382 383 7.982761 TTTAAAAGCGTGATAGTAAAGGGAA 57.017 32.000 0.00 0.00 0.00 3.97
406 407 1.691976 ACACGGGAATTGAGAGTCACA 59.308 47.619 0.00 0.00 0.00 3.58
417 418 4.115401 TGAGAGTCACATCACTACATGC 57.885 45.455 0.00 0.00 0.00 4.06
418 419 3.118992 TGAGAGTCACATCACTACATGCC 60.119 47.826 0.00 0.00 0.00 4.40
421 422 2.568956 AGTCACATCACTACATGCCTGT 59.431 45.455 0.00 0.00 39.49 4.00
422 423 2.674852 GTCACATCACTACATGCCTGTG 59.325 50.000 4.73 0.00 40.39 3.66
423 424 2.302733 TCACATCACTACATGCCTGTGT 59.697 45.455 4.73 0.00 40.16 3.72
424 425 3.513515 TCACATCACTACATGCCTGTGTA 59.486 43.478 4.73 0.00 40.16 2.90
425 426 3.618594 CACATCACTACATGCCTGTGTAC 59.381 47.826 4.73 0.00 37.12 2.90
427 428 4.252878 CATCACTACATGCCTGTGTACAA 58.747 43.478 4.73 0.00 36.79 2.41
428 429 3.925379 TCACTACATGCCTGTGTACAAG 58.075 45.455 4.73 0.00 36.79 3.16
430 431 3.928992 CACTACATGCCTGTGTACAAGAG 59.071 47.826 4.73 0.00 36.79 2.85
439 440 4.515191 GCCTGTGTACAAGAGAAACATGAA 59.485 41.667 0.00 0.00 0.00 2.57
450 451 5.693814 AGAGAAACATGAAATTCTTCACGC 58.306 37.500 0.00 0.00 44.28 5.34
458 459 3.243367 TGAAATTCTTCACGCAAGGTTGG 60.243 43.478 0.00 0.00 46.39 3.77
459 460 2.270352 ATTCTTCACGCAAGGTTGGA 57.730 45.000 0.00 0.00 46.39 3.53
470 471 1.681264 CAAGGTTGGAGTGTGGGAAAC 59.319 52.381 0.00 0.00 0.00 2.78
476 477 1.420138 TGGAGTGTGGGAAACTTCCTC 59.580 52.381 8.37 3.52 46.72 3.71
489 490 7.042950 GGGAAACTTCCTCTGAAATCTAGTAC 58.957 42.308 8.37 0.00 46.72 2.73
495 496 6.829229 TCCTCTGAAATCTAGTACGAACAA 57.171 37.500 0.00 0.00 0.00 2.83
503 504 8.218441 TGAAATCTAGTACGAACAAATGAAACG 58.782 33.333 0.00 0.00 0.00 3.60
510 511 6.919662 AGTACGAACAAATGAAACGAGTCTTA 59.080 34.615 0.00 0.00 0.00 2.10
511 512 6.592798 ACGAACAAATGAAACGAGTCTTAA 57.407 33.333 0.00 0.00 0.00 1.85
512 513 6.646636 ACGAACAAATGAAACGAGTCTTAAG 58.353 36.000 0.00 0.00 0.00 1.85
516 517 7.190920 ACAAATGAAACGAGTCTTAAGAAGG 57.809 36.000 6.78 2.05 0.00 3.46
522 523 7.916552 TGAAACGAGTCTTAAGAAGGAAAAAG 58.083 34.615 6.78 0.00 0.00 2.27
539 540 4.888038 AAAAGAACGTGACCCTACAAAC 57.112 40.909 0.00 0.00 0.00 2.93
550 551 3.949113 GACCCTACAAACCAAAGAACACA 59.051 43.478 0.00 0.00 0.00 3.72
561 562 3.628487 CCAAAGAACACACGTAGGGAAAA 59.372 43.478 0.00 0.00 0.00 2.29
562 563 4.261031 CCAAAGAACACACGTAGGGAAAAG 60.261 45.833 0.00 0.00 0.00 2.27
575 576 8.893727 CACGTAGGGAAAAGAAATCATAAGAAT 58.106 33.333 0.00 0.00 0.00 2.40
620 624 7.723616 TCCTACAAATCATTTCAACCAAAGAGA 59.276 33.333 0.00 0.00 0.00 3.10
662 666 9.712305 AACGCAAATAAAGCTGATATATACTCT 57.288 29.630 0.00 0.00 0.00 3.24
672 676 8.918961 AGCTGATATATACTCTCGCAAAATAC 57.081 34.615 0.00 0.00 0.00 1.89
691 695 8.610896 CAAAATACAGAGAGAGAATAAAGCTGG 58.389 37.037 0.00 0.00 0.00 4.85
699 703 9.515226 AGAGAGAGAATAAAGCTGGTATACTAG 57.485 37.037 11.69 11.69 0.00 2.57
830 3094 3.986006 GCGTCACTCCCACGGTCA 61.986 66.667 0.00 0.00 37.74 4.02
831 3095 2.970639 CGTCACTCCCACGGTCAT 59.029 61.111 0.00 0.00 33.46 3.06
832 3096 1.153823 CGTCACTCCCACGGTCATC 60.154 63.158 0.00 0.00 33.46 2.92
833 3097 1.595993 CGTCACTCCCACGGTCATCT 61.596 60.000 0.00 0.00 33.46 2.90
834 3098 0.173708 GTCACTCCCACGGTCATCTC 59.826 60.000 0.00 0.00 0.00 2.75
835 3099 0.970937 TCACTCCCACGGTCATCTCC 60.971 60.000 0.00 0.00 0.00 3.71
836 3100 1.078528 ACTCCCACGGTCATCTCCA 59.921 57.895 0.00 0.00 0.00 3.86
837 3101 0.325671 ACTCCCACGGTCATCTCCAT 60.326 55.000 0.00 0.00 0.00 3.41
838 3102 0.390860 CTCCCACGGTCATCTCCATC 59.609 60.000 0.00 0.00 0.00 3.51
839 3103 0.032117 TCCCACGGTCATCTCCATCT 60.032 55.000 0.00 0.00 0.00 2.90
840 3104 0.390860 CCCACGGTCATCTCCATCTC 59.609 60.000 0.00 0.00 0.00 2.75
841 3105 1.114627 CCACGGTCATCTCCATCTCA 58.885 55.000 0.00 0.00 0.00 3.27
842 3106 1.690893 CCACGGTCATCTCCATCTCAT 59.309 52.381 0.00 0.00 0.00 2.90
843 3107 2.288702 CCACGGTCATCTCCATCTCATC 60.289 54.545 0.00 0.00 0.00 2.92
844 3108 1.611006 ACGGTCATCTCCATCTCATCG 59.389 52.381 0.00 0.00 0.00 3.84
845 3109 1.882623 CGGTCATCTCCATCTCATCGA 59.117 52.381 0.00 0.00 0.00 3.59
846 3110 2.294512 CGGTCATCTCCATCTCATCGAA 59.705 50.000 0.00 0.00 0.00 3.71
847 3111 3.611293 CGGTCATCTCCATCTCATCGAAG 60.611 52.174 0.00 0.00 0.00 3.79
848 3112 3.320541 GGTCATCTCCATCTCATCGAAGT 59.679 47.826 0.00 0.00 0.00 3.01
849 3113 4.520874 GGTCATCTCCATCTCATCGAAGTA 59.479 45.833 0.00 0.00 0.00 2.24
850 3114 5.335583 GGTCATCTCCATCTCATCGAAGTAG 60.336 48.000 0.00 0.00 0.00 2.57
851 3115 5.240623 GTCATCTCCATCTCATCGAAGTAGT 59.759 44.000 0.00 0.00 0.00 2.73
852 3116 5.471797 TCATCTCCATCTCATCGAAGTAGTC 59.528 44.000 0.00 0.00 0.00 2.59
853 3117 4.781934 TCTCCATCTCATCGAAGTAGTCA 58.218 43.478 0.00 0.00 0.00 3.41
854 3118 4.576873 TCTCCATCTCATCGAAGTAGTCAC 59.423 45.833 0.00 0.00 0.00 3.67
855 3119 4.270008 TCCATCTCATCGAAGTAGTCACA 58.730 43.478 0.00 0.00 0.00 3.58
856 3120 4.096532 TCCATCTCATCGAAGTAGTCACAC 59.903 45.833 0.00 0.00 0.00 3.82
857 3121 4.142381 CCATCTCATCGAAGTAGTCACACA 60.142 45.833 0.00 0.00 0.00 3.72
858 3122 4.686839 TCTCATCGAAGTAGTCACACAG 57.313 45.455 0.00 0.00 0.00 3.66
859 3123 3.440522 TCTCATCGAAGTAGTCACACAGG 59.559 47.826 0.00 0.00 0.00 4.00
860 3124 2.094700 TCATCGAAGTAGTCACACAGGC 60.095 50.000 0.00 0.00 0.00 4.85
861 3125 0.240145 TCGAAGTAGTCACACAGGCG 59.760 55.000 0.00 0.00 0.00 5.52
862 3126 0.039437 CGAAGTAGTCACACAGGCGT 60.039 55.000 0.00 0.00 0.00 5.68
866 3130 3.567478 TAGTCACACAGGCGTGGCG 62.567 63.158 11.67 3.99 46.23 5.69
873 3137 4.514577 CAGGCGTGGCGTAGGGAG 62.515 72.222 0.00 0.00 0.00 4.30
935 3201 1.270907 ATCAAAGCGACTCTCCTGGT 58.729 50.000 0.00 0.00 0.00 4.00
976 3246 0.677842 CCTGCTTTGCTTTGCTTCCT 59.322 50.000 0.00 0.00 0.00 3.36
1034 3306 4.749310 CTCCCTTGCGCTGCTCGT 62.749 66.667 9.73 0.00 41.07 4.18
1092 3369 1.885163 TTCGCTTCTTCTCCCCCGAC 61.885 60.000 0.00 0.00 0.00 4.79
1133 3415 2.094649 GTCAACTCTCGAAGATCCGGTT 60.095 50.000 0.00 0.00 33.89 4.44
1160 3442 2.292569 CGTTACCTAGCTTGCGGAGATA 59.707 50.000 0.00 0.00 0.00 1.98
1161 3443 3.609644 CGTTACCTAGCTTGCGGAGATAG 60.610 52.174 0.00 5.48 42.68 2.08
1164 3446 0.605589 CTAGCTTGCGGAGATAGGGG 59.394 60.000 0.00 0.00 40.02 4.79
1196 3509 1.685421 GCAAGCTTAATGGGCCCCA 60.685 57.895 22.27 4.05 38.19 4.96
1216 3529 2.434359 CGTCCTCGGGGAAGCAAC 60.434 66.667 5.00 0.00 44.15 4.17
1217 3530 2.046217 GTCCTCGGGGAAGCAACC 60.046 66.667 5.00 0.00 44.15 3.77
1218 3531 2.203938 TCCTCGGGGAAGCAACCT 60.204 61.111 0.00 0.00 38.93 3.50
1219 3532 2.269241 CCTCGGGGAAGCAACCTC 59.731 66.667 0.00 0.00 33.58 3.85
1222 3535 4.394712 CGGGGAAGCAACCTCGCT 62.395 66.667 8.41 0.00 46.85 4.93
1223 3536 2.747855 GGGGAAGCAACCTCGCTG 60.748 66.667 0.00 0.00 42.89 5.18
1224 3537 2.747855 GGGAAGCAACCTCGCTGG 60.748 66.667 0.00 0.00 42.89 4.85
1225 3538 2.747855 GGAAGCAACCTCGCTGGG 60.748 66.667 0.00 0.00 42.89 4.45
1226 3539 2.347490 GAAGCAACCTCGCTGGGA 59.653 61.111 0.00 0.00 42.89 4.37
1227 3540 2.032681 AAGCAACCTCGCTGGGAC 59.967 61.111 0.00 0.00 42.89 4.46
1228 3541 3.553095 AAGCAACCTCGCTGGGACC 62.553 63.158 0.00 0.00 42.89 4.46
1230 3543 4.760047 CAACCTCGCTGGGACCCG 62.760 72.222 5.91 1.76 41.11 5.28
1310 3663 2.370189 CCGAGGGCCTTTTCTCTGATAT 59.630 50.000 7.89 0.00 0.00 1.63
1311 3664 3.578716 CCGAGGGCCTTTTCTCTGATATA 59.421 47.826 7.89 0.00 0.00 0.86
1326 3684 4.751600 TCTGATATAAGCTGATGCCAAACG 59.248 41.667 0.00 0.00 40.80 3.60
1329 3687 0.804364 TAAGCTGATGCCAAACGCTG 59.196 50.000 0.00 0.00 40.80 5.18
1330 3688 0.890542 AAGCTGATGCCAAACGCTGA 60.891 50.000 0.00 0.00 40.80 4.26
1331 3689 0.890542 AGCTGATGCCAAACGCTGAA 60.891 50.000 0.00 0.00 40.80 3.02
1332 3690 0.039256 GCTGATGCCAAACGCTGAAA 60.039 50.000 0.00 0.00 38.78 2.69
1354 3717 7.604164 TGAAAGAAAGTCGAATAGCTCTGAAAT 59.396 33.333 0.00 0.00 0.00 2.17
1355 3718 7.913674 AAGAAAGTCGAATAGCTCTGAAATT 57.086 32.000 0.00 0.00 0.00 1.82
1356 3719 7.532682 AGAAAGTCGAATAGCTCTGAAATTC 57.467 36.000 0.00 0.00 0.00 2.17
1357 3720 7.327214 AGAAAGTCGAATAGCTCTGAAATTCT 58.673 34.615 0.00 0.00 0.00 2.40
1358 3721 7.821846 AGAAAGTCGAATAGCTCTGAAATTCTT 59.178 33.333 0.00 0.00 0.00 2.52
1359 3722 7.532682 AAGTCGAATAGCTCTGAAATTCTTC 57.467 36.000 0.00 0.00 0.00 2.87
1361 3724 8.001881 AGTCGAATAGCTCTGAAATTCTTCTA 57.998 34.615 0.00 0.00 32.33 2.10
1362 3725 8.470805 AGTCGAATAGCTCTGAAATTCTTCTAA 58.529 33.333 0.00 0.00 32.33 2.10
1363 3726 9.088512 GTCGAATAGCTCTGAAATTCTTCTAAA 57.911 33.333 0.00 0.00 32.33 1.85
1364 3727 9.653287 TCGAATAGCTCTGAAATTCTTCTAAAA 57.347 29.630 0.00 0.00 32.33 1.52
1415 3778 6.463995 TTAATGTTTTTGTGCTGACCTTCT 57.536 33.333 0.00 0.00 0.00 2.85
1435 3798 1.081892 CAGGAAGGCATGTCAGAACG 58.918 55.000 0.00 0.00 0.00 3.95
1468 3831 0.981956 GCATTTTTAGTTGCCGCGAC 59.018 50.000 8.23 2.12 32.66 5.19
1472 3835 1.993542 TTTTAGTTGCCGCGACGATA 58.006 45.000 8.23 0.00 0.00 2.92
1478 3841 1.080298 TTGCCGCGACGATAACAAAT 58.920 45.000 8.23 0.00 0.00 2.32
1480 3843 1.061421 TGCCGCGACGATAACAAATTC 59.939 47.619 8.23 0.00 0.00 2.17
1483 3846 2.354196 CGCGACGATAACAAATTCAGC 58.646 47.619 0.00 0.00 0.00 4.26
1490 3853 6.494893 ACGATAACAAATTCAGCTAGCAAA 57.505 33.333 18.83 11.24 0.00 3.68
1500 3863 1.068333 CAGCTAGCAAACACGGCAAAT 60.068 47.619 18.83 0.00 0.00 2.32
1533 3898 5.905480 AAAAATGAACTGAACGGATTTGC 57.095 34.783 0.00 0.00 0.00 3.68
1536 3901 1.606668 TGAACTGAACGGATTTGCCAC 59.393 47.619 0.00 0.00 35.94 5.01
1539 3904 2.178273 GAACGGATTTGCCACGCC 59.822 61.111 0.00 0.00 35.94 5.68
1574 3939 1.272212 GCCATCCACGGACAACAAAAT 59.728 47.619 0.00 0.00 0.00 1.82
1579 5336 1.864082 CCACGGACAACAAAATTTGCC 59.136 47.619 5.52 0.00 0.00 4.52
1580 5337 2.544685 CACGGACAACAAAATTTGCCA 58.455 42.857 5.52 0.00 0.00 4.92
1581 5338 2.539274 CACGGACAACAAAATTTGCCAG 59.461 45.455 5.52 0.00 0.00 4.85
1582 5339 2.428890 ACGGACAACAAAATTTGCCAGA 59.571 40.909 5.52 0.00 0.00 3.86
1583 5340 2.794350 CGGACAACAAAATTTGCCAGAC 59.206 45.455 5.52 0.00 0.00 3.51
1584 5341 2.794350 GGACAACAAAATTTGCCAGACG 59.206 45.455 5.52 0.00 0.00 4.18
1585 5342 3.443976 GACAACAAAATTTGCCAGACGT 58.556 40.909 5.52 0.00 0.00 4.34
1586 5343 3.855858 ACAACAAAATTTGCCAGACGTT 58.144 36.364 5.52 0.00 0.00 3.99
1587 5344 3.862845 ACAACAAAATTTGCCAGACGTTC 59.137 39.130 5.52 0.00 0.00 3.95
1588 5345 2.726633 ACAAAATTTGCCAGACGTTCG 58.273 42.857 5.52 0.00 0.00 3.95
1589 5346 1.451651 CAAAATTTGCCAGACGTTCGC 59.548 47.619 0.00 0.00 0.00 4.70
1590 5347 0.951558 AAATTTGCCAGACGTTCGCT 59.048 45.000 0.00 0.00 0.00 4.93
1591 5348 1.803334 AATTTGCCAGACGTTCGCTA 58.197 45.000 0.00 0.00 0.00 4.26
1592 5349 1.359848 ATTTGCCAGACGTTCGCTAG 58.640 50.000 0.00 0.00 0.00 3.42
1593 5350 0.032952 TTTGCCAGACGTTCGCTAGT 59.967 50.000 0.00 0.00 0.00 2.57
1594 5351 0.032952 TTGCCAGACGTTCGCTAGTT 59.967 50.000 0.00 0.00 0.00 2.24
1595 5352 0.883153 TGCCAGACGTTCGCTAGTTA 59.117 50.000 0.00 0.00 0.00 2.24
1596 5353 1.475280 TGCCAGACGTTCGCTAGTTAT 59.525 47.619 0.00 0.00 0.00 1.89
1597 5354 1.852895 GCCAGACGTTCGCTAGTTATG 59.147 52.381 0.00 0.00 0.00 1.90
1598 5355 2.479049 GCCAGACGTTCGCTAGTTATGA 60.479 50.000 0.00 0.00 0.00 2.15
1599 5356 3.364062 CCAGACGTTCGCTAGTTATGAG 58.636 50.000 0.00 0.00 0.00 2.90
1600 5357 3.364062 CAGACGTTCGCTAGTTATGAGG 58.636 50.000 0.00 0.00 0.00 3.86
1601 5358 2.358267 AGACGTTCGCTAGTTATGAGGG 59.642 50.000 0.00 0.00 0.00 4.30
1602 5359 2.097825 ACGTTCGCTAGTTATGAGGGT 58.902 47.619 0.00 0.00 0.00 4.34
1603 5360 2.494870 ACGTTCGCTAGTTATGAGGGTT 59.505 45.455 0.00 0.00 0.00 4.11
1604 5361 3.114065 CGTTCGCTAGTTATGAGGGTTC 58.886 50.000 0.00 0.00 0.00 3.62
1605 5362 3.181489 CGTTCGCTAGTTATGAGGGTTCT 60.181 47.826 0.00 0.00 0.00 3.01
1606 5363 4.677250 CGTTCGCTAGTTATGAGGGTTCTT 60.677 45.833 0.00 0.00 0.00 2.52
1607 5364 5.176592 GTTCGCTAGTTATGAGGGTTCTTT 58.823 41.667 0.00 0.00 0.00 2.52
1608 5365 5.416271 TCGCTAGTTATGAGGGTTCTTTT 57.584 39.130 0.00 0.00 0.00 2.27
1609 5366 5.801380 TCGCTAGTTATGAGGGTTCTTTTT 58.199 37.500 0.00 0.00 0.00 1.94
1610 5367 6.938507 TCGCTAGTTATGAGGGTTCTTTTTA 58.061 36.000 0.00 0.00 0.00 1.52
1611 5368 7.562135 TCGCTAGTTATGAGGGTTCTTTTTAT 58.438 34.615 0.00 0.00 0.00 1.40
1612 5369 8.044908 TCGCTAGTTATGAGGGTTCTTTTTATT 58.955 33.333 0.00 0.00 0.00 1.40
1613 5370 8.674607 CGCTAGTTATGAGGGTTCTTTTTATTT 58.325 33.333 0.00 0.00 0.00 1.40
1628 5385 8.539770 TCTTTTTATTTTGTTCTTTGTGTGCA 57.460 26.923 0.00 0.00 0.00 4.57
1629 5386 8.993121 TCTTTTTATTTTGTTCTTTGTGTGCAA 58.007 25.926 0.00 0.00 0.00 4.08
1630 5387 9.604626 CTTTTTATTTTGTTCTTTGTGTGCAAA 57.395 25.926 0.00 0.00 41.77 3.68
1674 5440 3.194542 AGCACCGAATAGATAGGATCAGC 59.805 47.826 0.00 0.00 0.00 4.26
1705 5543 7.093354 ACTCGGTTAGCTGAATCACATATATG 58.907 38.462 11.29 11.29 0.00 1.78
1742 5580 2.108976 TACATGCAGCTAGCCGGC 59.891 61.111 21.89 21.89 44.83 6.13
1743 5581 2.730524 TACATGCAGCTAGCCGGCA 61.731 57.895 31.54 27.52 44.83 5.69
1813 5651 3.828451 CCCACTCAAATTGACACCATCTT 59.172 43.478 0.00 0.00 0.00 2.40
1814 5652 4.082571 CCCACTCAAATTGACACCATCTTC 60.083 45.833 0.00 0.00 0.00 2.87
1816 5654 5.184479 CCACTCAAATTGACACCATCTTCAT 59.816 40.000 0.00 0.00 0.00 2.57
1938 5776 1.202891 GCTGGACACAACCCCTACTTT 60.203 52.381 0.00 0.00 0.00 2.66
1955 5794 6.073222 CCCTACTTTGCAAACTACACTGTAAG 60.073 42.308 8.05 1.44 42.29 2.34
1956 5795 5.169836 ACTTTGCAAACTACACTGTAAGC 57.830 39.130 8.05 0.00 37.60 3.09
2124 5966 1.468520 CGCTGGTGTTCCGATCAAAAT 59.531 47.619 0.00 0.00 36.30 1.82
2135 5977 6.208402 TGTTCCGATCAAAATTCATCCAGAAA 59.792 34.615 0.00 0.00 40.22 2.52
2208 6059 5.393027 GCACAATTGGGAACATACTTGGTAG 60.393 44.000 13.13 0.00 42.32 3.18
2274 6128 2.554032 CAGAAATTGGTTTCCTGCGTCT 59.446 45.455 0.00 0.00 43.82 4.18
2549 6407 2.616960 TGGTGAGTGCATATGAACGAC 58.383 47.619 6.97 8.56 0.00 4.34
2553 6411 3.239941 GTGAGTGCATATGAACGACGTAC 59.760 47.826 6.97 0.55 0.00 3.67
2587 6446 4.877251 ACTACTTTCAAACAGGCACGTTTA 59.123 37.500 4.95 0.00 36.98 2.01
2607 6466 8.752187 ACGTTTAGTCCTTATCCTTACATAACA 58.248 33.333 0.00 0.00 0.00 2.41
2641 6500 1.153667 CTCCTTGCAGAGCGTCTCC 60.154 63.158 3.66 0.00 0.00 3.71
2865 6747 2.687425 TGGTGTGTGGAATGTCAAACAG 59.313 45.455 0.00 0.00 35.74 3.16
2945 6827 9.199982 CTTCCGTAAATCTTACAGTTGAGTTAA 57.800 33.333 0.00 0.00 0.00 2.01
3011 7006 8.485578 TTTGAACCAAAACATAAGGGAGTTAT 57.514 30.769 0.00 0.00 29.89 1.89
3021 7016 7.272144 ACATAAGGGAGTTATTTCCTCTGTT 57.728 36.000 0.00 0.00 37.40 3.16
3074 7069 7.778083 TCTAAATTGGATGTATGTAGACACGT 58.222 34.615 0.00 0.00 30.52 4.49
3104 7099 5.163663 TGTGTTTGTTCACTCATTTCAGTCC 60.164 40.000 0.00 0.00 38.90 3.85
3138 7133 9.398170 GTCCATATTGAAATATCCAAAATGTCG 57.602 33.333 0.00 0.00 29.35 4.35
3164 7159 2.166907 AGTGGATGGAGGGAGTAGTG 57.833 55.000 0.00 0.00 0.00 2.74
3260 7264 9.593134 AAAAATACATGTGTCTTGTTTAAAGCA 57.407 25.926 9.11 0.00 0.00 3.91
3268 7272 8.177119 TGTGTCTTGTTTAAAGCATAGGAAAT 57.823 30.769 0.00 0.00 0.00 2.17
3358 7790 6.987404 TGAAAATTGATCCCAATGCACATATG 59.013 34.615 0.00 0.00 41.84 1.78
3364 7796 1.338973 CCCAATGCACATATGTGGCTC 59.661 52.381 31.63 18.51 45.72 4.70
3407 7839 4.333926 GGCTGAAAGTTAGATCATGTCCAC 59.666 45.833 0.00 0.00 35.30 4.02
3456 7888 5.529581 TCATTTTGGGTTTTCTCCTGTTC 57.470 39.130 0.00 0.00 0.00 3.18
3816 8264 7.443259 TTTCCTATTTCTGACTTTTAACCCG 57.557 36.000 0.00 0.00 0.00 5.28
3856 8305 1.320344 TAGCAGAAGTCGTGGCGGAT 61.320 55.000 0.00 0.00 0.00 4.18
3858 8307 1.519455 CAGAAGTCGTGGCGGATCC 60.519 63.158 0.00 0.00 0.00 3.36
3861 8310 2.907897 GAAGTCGTGGCGGATCCTGG 62.908 65.000 10.75 0.00 35.26 4.45
3862 8311 4.530857 GTCGTGGCGGATCCTGGG 62.531 72.222 10.75 0.00 35.26 4.45
3864 8313 4.096003 CGTGGCGGATCCTGGGTT 62.096 66.667 10.75 0.00 35.26 4.11
3961 8447 1.898938 CATGCAATGCTGTTGTACGG 58.101 50.000 6.82 0.00 37.62 4.02
3963 8449 0.590682 TGCAATGCTGTTGTACGGTG 59.409 50.000 6.82 0.00 0.00 4.94
3965 8451 1.001815 GCAATGCTGTTGTACGGTGTT 60.002 47.619 0.00 0.00 0.00 3.32
3966 8452 2.542824 GCAATGCTGTTGTACGGTGTTT 60.543 45.455 0.00 0.00 0.00 2.83
3967 8453 3.296628 CAATGCTGTTGTACGGTGTTTC 58.703 45.455 0.00 0.00 0.00 2.78
3968 8454 2.319136 TGCTGTTGTACGGTGTTTCT 57.681 45.000 0.00 0.00 0.00 2.52
3969 8455 2.634600 TGCTGTTGTACGGTGTTTCTT 58.365 42.857 0.00 0.00 0.00 2.52
3971 8457 2.610374 GCTGTTGTACGGTGTTTCTTCA 59.390 45.455 0.00 0.00 0.00 3.02
3972 8458 3.303132 GCTGTTGTACGGTGTTTCTTCAG 60.303 47.826 0.00 0.00 0.00 3.02
3973 8459 3.864243 TGTTGTACGGTGTTTCTTCAGT 58.136 40.909 0.00 0.00 0.00 3.41
3974 8460 4.255301 TGTTGTACGGTGTTTCTTCAGTT 58.745 39.130 0.00 0.00 0.00 3.16
3975 8461 4.330620 TGTTGTACGGTGTTTCTTCAGTTC 59.669 41.667 0.00 0.00 0.00 3.01
3976 8462 3.117794 TGTACGGTGTTTCTTCAGTTCG 58.882 45.455 0.00 0.00 0.00 3.95
3977 8463 0.935196 ACGGTGTTTCTTCAGTTCGC 59.065 50.000 0.00 0.00 0.00 4.70
3978 8464 1.217882 CGGTGTTTCTTCAGTTCGCT 58.782 50.000 0.00 0.00 0.00 4.93
3979 8465 2.223876 ACGGTGTTTCTTCAGTTCGCTA 60.224 45.455 0.00 0.00 0.00 4.26
3981 8467 3.391049 GGTGTTTCTTCAGTTCGCTAGT 58.609 45.455 0.00 0.00 0.00 2.57
3982 8468 3.429207 GGTGTTTCTTCAGTTCGCTAGTC 59.571 47.826 0.00 0.00 0.00 2.59
3988 8474 5.134202 TCTTCAGTTCGCTAGTCATTTGA 57.866 39.130 0.00 0.00 0.00 2.69
3990 8476 6.863275 TCTTCAGTTCGCTAGTCATTTGATA 58.137 36.000 0.00 0.00 0.00 2.15
3991 8477 7.492524 TCTTCAGTTCGCTAGTCATTTGATAT 58.507 34.615 0.00 0.00 0.00 1.63
4007 8493 8.943002 TCATTTGATATACAGCTCATATGCTTG 58.057 33.333 0.00 0.00 41.98 4.01
4013 8499 4.694760 ACAGCTCATATGCTTGGTGATA 57.305 40.909 20.67 0.00 41.98 2.15
4015 8501 5.061853 ACAGCTCATATGCTTGGTGATAAG 58.938 41.667 20.67 3.78 41.98 1.73
4018 8504 5.938710 AGCTCATATGCTTGGTGATAAGATG 59.061 40.000 0.00 0.00 40.93 2.90
4019 8505 5.936372 GCTCATATGCTTGGTGATAAGATGA 59.064 40.000 0.00 0.00 0.00 2.92
4020 8506 6.128336 GCTCATATGCTTGGTGATAAGATGAC 60.128 42.308 0.00 0.00 0.00 3.06
4022 8508 7.281841 TCATATGCTTGGTGATAAGATGACAA 58.718 34.615 0.00 0.00 0.00 3.18
4024 8510 5.885230 TGCTTGGTGATAAGATGACAAAG 57.115 39.130 0.00 0.00 31.51 2.77
4025 8511 5.559770 TGCTTGGTGATAAGATGACAAAGA 58.440 37.500 0.00 0.00 30.03 2.52
4027 8513 6.660521 TGCTTGGTGATAAGATGACAAAGAAT 59.339 34.615 0.00 0.00 30.03 2.40
4028 8514 7.148188 TGCTTGGTGATAAGATGACAAAGAATC 60.148 37.037 0.00 0.00 30.03 2.52
4029 8515 7.148188 GCTTGGTGATAAGATGACAAAGAATCA 60.148 37.037 0.00 0.00 30.03 2.57
4033 8544 9.565213 GGTGATAAGATGACAAAGAATCAAAAG 57.435 33.333 0.00 0.00 0.00 2.27
4038 8549 7.830099 AGATGACAAAGAATCAAAAGGAAGT 57.170 32.000 0.00 0.00 0.00 3.01
4039 8550 8.924511 AGATGACAAAGAATCAAAAGGAAGTA 57.075 30.769 0.00 0.00 0.00 2.24
4056 8567 7.909485 AGGAAGTATCTTATTTCTCGGGTTA 57.091 36.000 0.00 0.00 0.00 2.85
4078 8589 8.520351 GGTTACTGATTTAGTACTGCCAAATTT 58.480 33.333 5.39 0.00 41.48 1.82
4107 8621 3.508402 TCGCACACTACAAATCAGGAGTA 59.492 43.478 0.00 0.00 0.00 2.59
4198 8712 1.068741 CTGGCGAGGATTACTGGGTAC 59.931 57.143 0.00 0.00 0.00 3.34
4199 8713 1.117150 GGCGAGGATTACTGGGTACA 58.883 55.000 0.00 0.00 0.00 2.90
4225 8739 7.625498 TGTTGATTCCCCATATCACACTATA 57.375 36.000 0.00 0.00 32.04 1.31
4230 8744 8.102676 TGATTCCCCATATCACACTATATGTTG 58.897 37.037 0.00 0.00 40.64 3.33
4323 8839 2.514803 GCTGGGGTGATGTAAGTTTGT 58.485 47.619 0.00 0.00 0.00 2.83
4430 8961 3.199880 ACTTCAAGATCATAAGGGGCG 57.800 47.619 0.00 0.00 0.00 6.13
4453 8984 1.027357 ATGAATGTGGCATCGAAGGC 58.973 50.000 7.33 7.33 0.00 4.35
4533 9064 1.339631 TGGAACGGCCATACTTTGAGG 60.340 52.381 2.24 0.00 43.33 3.86
4536 9067 1.568504 ACGGCCATACTTTGAGGAGA 58.431 50.000 2.24 0.00 0.00 3.71
4539 9070 1.210478 GGCCATACTTTGAGGAGAGCA 59.790 52.381 0.00 0.00 0.00 4.26
4541 9072 2.544685 CCATACTTTGAGGAGAGCACG 58.455 52.381 0.00 0.00 0.00 5.34
4547 9085 0.750249 TTGAGGAGAGCACGAACACA 59.250 50.000 0.00 0.00 0.00 3.72
4587 9125 4.463539 TGCATGTCAAATGAAGCCACTAAT 59.536 37.500 0.00 0.00 0.00 1.73
4591 9129 7.545265 GCATGTCAAATGAAGCCACTAATTTAA 59.455 33.333 0.00 0.00 0.00 1.52
4594 9132 8.296713 TGTCAAATGAAGCCACTAATTTAACTC 58.703 33.333 0.00 0.00 0.00 3.01
4597 9135 8.299570 CAAATGAAGCCACTAATTTAACTCTGT 58.700 33.333 0.00 0.00 0.00 3.41
4598 9136 6.801539 TGAAGCCACTAATTTAACTCTGTG 57.198 37.500 0.00 0.00 0.00 3.66
4606 9144 6.659242 CACTAATTTAACTCTGTGGGTTCCAT 59.341 38.462 0.00 0.00 35.28 3.41
4650 9188 2.840176 CGCAAACGCTGATATGTTGTTC 59.160 45.455 0.00 0.00 0.00 3.18
4679 9218 3.316308 CACTTGTTCAGAAACAGAAGGGG 59.684 47.826 0.00 0.00 45.72 4.79
4754 9296 6.862608 TGCTATGTTTCATTTTTAGTGTGCAG 59.137 34.615 0.00 0.00 0.00 4.41
4825 9367 3.914426 GGAAGAATCCAAGTAGAGCCA 57.086 47.619 0.00 0.00 45.79 4.75
4839 9391 1.303074 AGCCACCAGTGCACATGAG 60.303 57.895 21.04 7.81 0.00 2.90
4847 9399 3.389002 ACCAGTGCACATGAGCTATGATA 59.611 43.478 21.04 0.00 39.21 2.15
4856 9408 5.698089 CACATGAGCTATGATACAAATCGGT 59.302 40.000 0.00 0.00 39.21 4.69
4881 9433 7.275341 GTGAAATCTGATAGAAGTGTCACTCAG 59.725 40.741 5.82 9.17 36.56 3.35
4895 9464 8.641498 AGTGTCACTCAGGAAAATTATTCAAT 57.359 30.769 0.00 0.00 0.00 2.57
4960 9576 5.693814 AGCATTCACTCTTTTGACGAATTC 58.306 37.500 0.00 0.00 0.00 2.17
4966 9582 7.496529 TCACTCTTTTGACGAATTCAGATTT 57.503 32.000 6.22 0.00 34.94 2.17
5014 9645 2.825205 TGTGTGTGGATATGAGCATCG 58.175 47.619 0.00 0.00 38.61 3.84
5389 10021 2.899900 TCTGAGCTTCAGCCAGAGTAAA 59.100 45.455 13.07 0.00 43.95 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 3.378512 ACTTCTCATGCATCTACCCTCA 58.621 45.455 0.00 0.00 0.00 3.86
111 112 4.455533 TGACATGACTAGCCAAACACAATC 59.544 41.667 0.00 0.00 0.00 2.67
120 121 2.099405 TCGACATGACATGACTAGCCA 58.901 47.619 22.19 0.00 0.00 4.75
145 146 4.879545 TGTTCTTCGGGGCATTTATTAGAC 59.120 41.667 0.00 0.00 0.00 2.59
171 172 2.161855 GAAACACATCACCATCCTGCA 58.838 47.619 0.00 0.00 0.00 4.41
172 173 2.095059 GTGAAACACATCACCATCCTGC 60.095 50.000 0.00 0.00 43.11 4.85
173 174 3.837213 GTGAAACACATCACCATCCTG 57.163 47.619 0.00 0.00 43.11 3.86
217 218 1.600957 GAAGGCATCGACATGACATGG 59.399 52.381 19.39 3.03 41.16 3.66
230 231 3.032265 GGGGGATTTGTTAGAAGGCAT 57.968 47.619 0.00 0.00 0.00 4.40
285 286 4.902443 TTTTGTACATTTGCTCCGTTGA 57.098 36.364 0.00 0.00 0.00 3.18
290 291 5.921004 TTGCAATTTTGTACATTTGCTCC 57.079 34.783 25.91 9.67 43.67 4.70
321 322 2.160417 CCCTCGATGTTTCTGTTTGAGC 59.840 50.000 0.00 0.00 0.00 4.26
326 327 0.322546 GGCCCCTCGATGTTTCTGTT 60.323 55.000 0.00 0.00 0.00 3.16
340 341 3.912496 AAAATCTTGCAAATAGGCCCC 57.088 42.857 0.00 0.00 0.00 5.80
382 383 4.036380 GTGACTCTCAATTCCCGTGTTTTT 59.964 41.667 0.00 0.00 0.00 1.94
396 397 3.118992 GGCATGTAGTGATGTGACTCTCA 60.119 47.826 0.00 0.00 0.00 3.27
406 407 4.222810 TCTTGTACACAGGCATGTAGTGAT 59.777 41.667 2.51 7.52 37.65 3.06
417 418 6.618287 TTTCATGTTTCTCTTGTACACAGG 57.382 37.500 0.00 0.00 0.00 4.00
418 419 8.562892 AGAATTTCATGTTTCTCTTGTACACAG 58.437 33.333 0.00 0.00 0.00 3.66
421 422 9.119418 TGAAGAATTTCATGTTTCTCTTGTACA 57.881 29.630 0.00 0.00 38.37 2.90
422 423 9.387123 GTGAAGAATTTCATGTTTCTCTTGTAC 57.613 33.333 0.00 0.00 44.62 2.90
423 424 8.282592 CGTGAAGAATTTCATGTTTCTCTTGTA 58.717 33.333 0.00 0.00 44.62 2.41
424 425 7.134815 CGTGAAGAATTTCATGTTTCTCTTGT 58.865 34.615 0.00 0.00 44.62 3.16
425 426 7.544511 CGTGAAGAATTTCATGTTTCTCTTG 57.455 36.000 0.00 0.00 44.62 3.02
439 440 2.554032 CTCCAACCTTGCGTGAAGAATT 59.446 45.455 0.00 0.00 32.82 2.17
450 451 1.681264 GTTTCCCACACTCCAACCTTG 59.319 52.381 0.00 0.00 0.00 3.61
470 471 6.853720 TGTTCGTACTAGATTTCAGAGGAAG 58.146 40.000 0.00 0.00 33.82 3.46
476 477 9.530129 GTTTCATTTGTTCGTACTAGATTTCAG 57.470 33.333 0.00 0.00 0.00 3.02
489 490 6.873656 TCTTAAGACTCGTTTCATTTGTTCG 58.126 36.000 0.00 0.00 0.00 3.95
495 496 8.446599 TTTTCCTTCTTAAGACTCGTTTCATT 57.553 30.769 4.18 0.00 0.00 2.57
503 504 7.224167 TCACGTTCTTTTTCCTTCTTAAGACTC 59.776 37.037 4.18 0.00 0.00 3.36
510 511 3.630769 GGGTCACGTTCTTTTTCCTTCTT 59.369 43.478 0.00 0.00 0.00 2.52
511 512 3.118000 AGGGTCACGTTCTTTTTCCTTCT 60.118 43.478 0.00 0.00 0.00 2.85
512 513 3.211865 AGGGTCACGTTCTTTTTCCTTC 58.788 45.455 0.00 0.00 0.00 3.46
516 517 5.268544 GTTTGTAGGGTCACGTTCTTTTTC 58.731 41.667 0.00 0.00 0.00 2.29
522 523 2.243602 TGGTTTGTAGGGTCACGTTC 57.756 50.000 0.00 0.00 0.00 3.95
539 540 2.536761 TCCCTACGTGTGTTCTTTGG 57.463 50.000 0.00 0.00 0.00 3.28
550 551 9.462606 AATTCTTATGATTTCTTTTCCCTACGT 57.537 29.630 0.00 0.00 0.00 3.57
598 602 6.462909 GGGTCTCTTTGGTTGAAATGATTTGT 60.463 38.462 0.00 0.00 0.00 2.83
600 604 5.012046 GGGGTCTCTTTGGTTGAAATGATTT 59.988 40.000 0.00 0.00 0.00 2.17
603 607 3.496331 GGGGTCTCTTTGGTTGAAATGA 58.504 45.455 0.00 0.00 0.00 2.57
609 613 1.523758 CTTCGGGGTCTCTTTGGTTG 58.476 55.000 0.00 0.00 0.00 3.77
662 666 7.010552 GCTTTATTCTCTCTCTGTATTTTGCGA 59.989 37.037 0.00 0.00 0.00 5.10
672 676 8.177119 AGTATACCAGCTTTATTCTCTCTCTG 57.823 38.462 0.00 0.00 0.00 3.35
699 703 2.968655 CGGCTTGCTGTTTAAAACGTAC 59.031 45.455 0.00 0.00 0.00 3.67
819 3083 0.390860 GATGGAGATGACCGTGGGAG 59.609 60.000 0.00 0.00 0.00 4.30
820 3084 0.032117 AGATGGAGATGACCGTGGGA 60.032 55.000 0.00 0.00 0.00 4.37
821 3085 0.390860 GAGATGGAGATGACCGTGGG 59.609 60.000 0.00 0.00 0.00 4.61
824 3088 1.611006 CGATGAGATGGAGATGACCGT 59.389 52.381 0.00 0.00 0.00 4.83
825 3089 1.882623 TCGATGAGATGGAGATGACCG 59.117 52.381 0.00 0.00 0.00 4.79
826 3090 3.320541 ACTTCGATGAGATGGAGATGACC 59.679 47.826 5.16 0.00 0.00 4.02
827 3091 4.582701 ACTTCGATGAGATGGAGATGAC 57.417 45.455 5.16 0.00 0.00 3.06
828 3092 5.380900 ACTACTTCGATGAGATGGAGATGA 58.619 41.667 5.16 0.00 37.19 2.92
829 3093 5.240403 TGACTACTTCGATGAGATGGAGATG 59.760 44.000 5.16 0.00 37.19 2.90
830 3094 5.240623 GTGACTACTTCGATGAGATGGAGAT 59.759 44.000 5.16 0.00 37.19 2.75
831 3095 4.576873 GTGACTACTTCGATGAGATGGAGA 59.423 45.833 5.16 0.00 37.19 3.71
832 3096 4.336713 TGTGACTACTTCGATGAGATGGAG 59.663 45.833 5.16 0.00 39.98 3.86
833 3097 4.096532 GTGTGACTACTTCGATGAGATGGA 59.903 45.833 5.16 0.00 0.00 3.41
834 3098 4.142381 TGTGTGACTACTTCGATGAGATGG 60.142 45.833 5.16 0.00 0.00 3.51
835 3099 4.986622 TGTGTGACTACTTCGATGAGATG 58.013 43.478 5.16 0.00 0.00 2.90
836 3100 4.097135 CCTGTGTGACTACTTCGATGAGAT 59.903 45.833 5.16 0.00 0.00 2.75
837 3101 3.440522 CCTGTGTGACTACTTCGATGAGA 59.559 47.826 5.16 0.00 0.00 3.27
838 3102 3.763902 CCTGTGTGACTACTTCGATGAG 58.236 50.000 5.16 0.00 0.00 2.90
839 3103 2.094700 GCCTGTGTGACTACTTCGATGA 60.095 50.000 5.16 0.00 0.00 2.92
840 3104 2.263077 GCCTGTGTGACTACTTCGATG 58.737 52.381 0.00 0.00 0.00 3.84
841 3105 1.135373 CGCCTGTGTGACTACTTCGAT 60.135 52.381 0.00 0.00 0.00 3.59
842 3106 0.240145 CGCCTGTGTGACTACTTCGA 59.760 55.000 0.00 0.00 0.00 3.71
843 3107 0.039437 ACGCCTGTGTGACTACTTCG 60.039 55.000 0.00 0.00 0.00 3.79
844 3108 1.419374 CACGCCTGTGTGACTACTTC 58.581 55.000 4.88 0.00 42.55 3.01
845 3109 0.033504 CCACGCCTGTGTGACTACTT 59.966 55.000 12.19 0.00 44.92 2.24
846 3110 1.666011 CCACGCCTGTGTGACTACT 59.334 57.895 12.19 0.00 44.92 2.57
847 3111 2.027625 GCCACGCCTGTGTGACTAC 61.028 63.158 12.19 0.00 44.92 2.73
848 3112 2.342279 GCCACGCCTGTGTGACTA 59.658 61.111 12.19 0.00 44.92 2.59
849 3113 4.969196 CGCCACGCCTGTGTGACT 62.969 66.667 12.19 0.00 44.92 3.41
850 3114 3.851845 TACGCCACGCCTGTGTGAC 62.852 63.158 12.19 0.00 44.92 3.67
851 3115 3.567478 CTACGCCACGCCTGTGTGA 62.567 63.158 12.19 0.00 44.92 3.58
852 3116 3.112075 CTACGCCACGCCTGTGTG 61.112 66.667 3.88 3.88 44.92 3.82
853 3117 4.373116 CCTACGCCACGCCTGTGT 62.373 66.667 0.00 0.00 44.92 3.72
856 3120 4.514577 CTCCCTACGCCACGCCTG 62.515 72.222 0.00 0.00 0.00 4.85
865 3129 3.846430 GTTCCCGGCCTCCCTACG 61.846 72.222 0.00 0.00 0.00 3.51
866 3130 3.477346 GGTTCCCGGCCTCCCTAC 61.477 72.222 0.00 0.00 0.00 3.18
867 3131 2.850851 ATTGGTTCCCGGCCTCCCTA 62.851 60.000 0.00 0.00 0.00 3.53
868 3132 2.850851 TATTGGTTCCCGGCCTCCCT 62.851 60.000 0.00 0.00 0.00 4.20
869 3133 1.928714 TTATTGGTTCCCGGCCTCCC 61.929 60.000 0.00 0.00 0.00 4.30
870 3134 0.033894 TTTATTGGTTCCCGGCCTCC 60.034 55.000 0.00 0.00 0.00 4.30
871 3135 1.842052 TTTTATTGGTTCCCGGCCTC 58.158 50.000 0.00 0.00 0.00 4.70
872 3136 2.312424 TTTTTATTGGTTCCCGGCCT 57.688 45.000 0.00 0.00 0.00 5.19
896 3161 3.685214 CTCCTCTTCGCCCGACACG 62.685 68.421 0.00 0.00 0.00 4.49
898 3163 0.970937 ATTCTCCTCTTCGCCCGACA 60.971 55.000 0.00 0.00 0.00 4.35
901 3166 0.175760 TTGATTCTCCTCTTCGCCCG 59.824 55.000 0.00 0.00 0.00 6.13
953 3219 0.957362 AGCAAAGCAAAGCAGGAGTC 59.043 50.000 0.00 0.00 0.00 3.36
976 3246 2.085320 CTTCTTCCTCTTCCTCGACGA 58.915 52.381 0.00 0.00 0.00 4.20
1146 3428 0.187606 TCCCCTATCTCCGCAAGCTA 59.812 55.000 0.00 0.00 0.00 3.32
1148 3430 0.533085 GTTCCCCTATCTCCGCAAGC 60.533 60.000 0.00 0.00 0.00 4.01
1160 3442 0.253327 GCGATCCTCAAAGTTCCCCT 59.747 55.000 0.00 0.00 0.00 4.79
1161 3443 0.035439 TGCGATCCTCAAAGTTCCCC 60.035 55.000 0.00 0.00 0.00 4.81
1163 3445 1.131315 GCTTGCGATCCTCAAAGTTCC 59.869 52.381 0.00 0.00 0.00 3.62
1164 3446 2.079925 AGCTTGCGATCCTCAAAGTTC 58.920 47.619 0.00 0.00 0.00 3.01
1207 3520 2.747855 CCAGCGAGGTTGCTTCCC 60.748 66.667 0.00 0.00 44.46 3.97
1208 3521 2.747855 CCCAGCGAGGTTGCTTCC 60.748 66.667 0.00 0.00 44.46 3.46
1209 3522 2.035442 GTCCCAGCGAGGTTGCTTC 61.035 63.158 0.00 0.00 44.46 3.86
1210 3523 2.032681 GTCCCAGCGAGGTTGCTT 59.967 61.111 0.00 0.00 44.46 3.91
1213 3526 4.760047 CGGGTCCCAGCGAGGTTG 62.760 72.222 9.12 0.00 34.66 3.77
1326 3684 4.867608 AGAGCTATTCGACTTTCTTTCAGC 59.132 41.667 0.00 0.00 0.00 4.26
1329 3687 6.952935 TTCAGAGCTATTCGACTTTCTTTC 57.047 37.500 0.00 0.00 0.00 2.62
1330 3688 7.913674 ATTTCAGAGCTATTCGACTTTCTTT 57.086 32.000 0.00 0.00 0.00 2.52
1331 3689 7.821846 AGAATTTCAGAGCTATTCGACTTTCTT 59.178 33.333 0.00 0.00 34.33 2.52
1332 3690 7.327214 AGAATTTCAGAGCTATTCGACTTTCT 58.673 34.615 0.00 0.00 34.33 2.52
1395 3758 3.953612 TGAGAAGGTCAGCACAAAAACAT 59.046 39.130 0.00 0.00 0.00 2.71
1415 3778 1.338105 CGTTCTGACATGCCTTCCTGA 60.338 52.381 0.00 0.00 0.00 3.86
1452 3815 1.149987 ATCGTCGCGGCAACTAAAAA 58.850 45.000 12.89 0.00 0.00 1.94
1460 3823 1.061421 GAATTTGTTATCGTCGCGGCA 59.939 47.619 12.89 0.00 0.00 5.69
1468 3831 6.249260 GTGTTTGCTAGCTGAATTTGTTATCG 59.751 38.462 17.23 0.00 0.00 2.92
1472 3835 4.290155 CGTGTTTGCTAGCTGAATTTGTT 58.710 39.130 17.23 0.00 0.00 2.83
1478 3841 0.533978 TGCCGTGTTTGCTAGCTGAA 60.534 50.000 17.23 8.11 0.00 3.02
1480 3843 0.310543 TTTGCCGTGTTTGCTAGCTG 59.689 50.000 17.23 0.00 0.00 4.24
1483 3846 1.812571 AGGATTTGCCGTGTTTGCTAG 59.187 47.619 0.00 0.00 43.43 3.42
1490 3853 1.526575 CTTGCCAGGATTTGCCGTGT 61.527 55.000 0.00 0.00 43.43 4.49
1512 3877 4.202202 TGGCAAATCCGTTCAGTTCATTTT 60.202 37.500 0.00 0.00 37.80 1.82
1515 3880 2.228822 GTGGCAAATCCGTTCAGTTCAT 59.771 45.455 0.00 0.00 37.80 2.57
1533 3898 0.611714 AGTTTAGTGGGTAGGCGTGG 59.388 55.000 0.00 0.00 0.00 4.94
1536 3901 1.084289 GCAAGTTTAGTGGGTAGGCG 58.916 55.000 0.00 0.00 0.00 5.52
1539 3904 3.279434 GGATGGCAAGTTTAGTGGGTAG 58.721 50.000 0.00 0.00 0.00 3.18
1574 3939 0.032952 ACTAGCGAACGTCTGGCAAA 59.967 50.000 7.95 0.00 0.00 3.68
1579 5336 3.364062 CCTCATAACTAGCGAACGTCTG 58.636 50.000 0.00 0.00 0.00 3.51
1580 5337 2.358267 CCCTCATAACTAGCGAACGTCT 59.642 50.000 0.00 0.00 0.00 4.18
1581 5338 2.098770 ACCCTCATAACTAGCGAACGTC 59.901 50.000 0.00 0.00 0.00 4.34
1582 5339 2.097825 ACCCTCATAACTAGCGAACGT 58.902 47.619 0.00 0.00 0.00 3.99
1583 5340 2.865343 ACCCTCATAACTAGCGAACG 57.135 50.000 0.00 0.00 0.00 3.95
1584 5341 4.388378 AGAACCCTCATAACTAGCGAAC 57.612 45.455 0.00 0.00 0.00 3.95
1585 5342 5.416271 AAAGAACCCTCATAACTAGCGAA 57.584 39.130 0.00 0.00 0.00 4.70
1586 5343 5.416271 AAAAGAACCCTCATAACTAGCGA 57.584 39.130 0.00 0.00 0.00 4.93
1587 5344 7.787725 ATAAAAAGAACCCTCATAACTAGCG 57.212 36.000 0.00 0.00 0.00 4.26
1596 5353 9.377312 CAAAGAACAAAATAAAAAGAACCCTCA 57.623 29.630 0.00 0.00 0.00 3.86
1597 5354 9.378551 ACAAAGAACAAAATAAAAAGAACCCTC 57.621 29.630 0.00 0.00 0.00 4.30
1598 5355 9.161629 CACAAAGAACAAAATAAAAAGAACCCT 57.838 29.630 0.00 0.00 0.00 4.34
1599 5356 8.941977 ACACAAAGAACAAAATAAAAAGAACCC 58.058 29.630 0.00 0.00 0.00 4.11
1600 5357 9.753669 CACACAAAGAACAAAATAAAAAGAACC 57.246 29.630 0.00 0.00 0.00 3.62
1601 5358 9.261318 GCACACAAAGAACAAAATAAAAAGAAC 57.739 29.630 0.00 0.00 0.00 3.01
1602 5359 8.993121 TGCACACAAAGAACAAAATAAAAAGAA 58.007 25.926 0.00 0.00 0.00 2.52
1603 5360 8.539770 TGCACACAAAGAACAAAATAAAAAGA 57.460 26.923 0.00 0.00 0.00 2.52
1604 5361 9.604626 TTTGCACACAAAGAACAAAATAAAAAG 57.395 25.926 0.00 0.00 40.84 2.27
1620 5377 6.092807 GGGTTTTTGTTCTTATTTGCACACAA 59.907 34.615 0.00 0.00 0.00 3.33
1628 5385 6.911250 AGGATCGGGTTTTTGTTCTTATTT 57.089 33.333 0.00 0.00 0.00 1.40
1629 5386 6.095021 GCTAGGATCGGGTTTTTGTTCTTATT 59.905 38.462 0.00 0.00 0.00 1.40
1630 5387 5.589050 GCTAGGATCGGGTTTTTGTTCTTAT 59.411 40.000 0.00 0.00 0.00 1.73
1674 5440 2.624316 TCAGCTAACCGAGTAACACG 57.376 50.000 0.00 0.00 0.00 4.49
1705 5543 9.226345 GCATGTACATAGAGATTTTAAGCAAAC 57.774 33.333 8.32 0.00 0.00 2.93
1742 5580 1.248785 AATGCTCTGCCTTGGCTGTG 61.249 55.000 13.18 13.46 0.00 3.66
1743 5581 0.964358 GAATGCTCTGCCTTGGCTGT 60.964 55.000 13.18 0.00 0.00 4.40
1938 5776 3.804036 AGTGCTTACAGTGTAGTTTGCA 58.196 40.909 14.13 14.13 0.00 4.08
1955 5794 1.266989 GAGGGTGTTGCTGTTTAGTGC 59.733 52.381 0.00 0.00 0.00 4.40
1956 5795 1.880027 GGAGGGTGTTGCTGTTTAGTG 59.120 52.381 0.00 0.00 0.00 2.74
2208 6059 7.648142 TCAACATTGAGTTATCTTGTTGAACC 58.352 34.615 12.79 0.00 45.57 3.62
2265 6119 5.529430 TCAAAGTAATCAAAAAGACGCAGGA 59.471 36.000 0.00 0.00 0.00 3.86
2549 6407 2.634600 AGTAGTCTGAGAGCAGGTACG 58.365 52.381 0.00 0.00 42.53 3.67
2553 6411 4.527509 TTGAAAGTAGTCTGAGAGCAGG 57.472 45.455 0.00 0.00 42.53 4.85
2587 6446 9.449719 CAACTTTGTTATGTAAGGATAAGGACT 57.550 33.333 0.00 0.00 0.00 3.85
2607 6466 4.440112 GCAAGGAGTACAAACAGCAACTTT 60.440 41.667 0.00 0.00 0.00 2.66
2789 6648 3.712016 TGGAGGATCGGAACATTCAAA 57.288 42.857 0.00 0.00 34.37 2.69
2865 6747 4.025229 TGAGACGTTGAGTTTACATTGCAC 60.025 41.667 0.00 0.00 0.00 4.57
3047 7042 9.093970 CGTGTCTACATACATCCAATTTAGAAA 57.906 33.333 0.00 0.00 0.00 2.52
3048 7043 8.255206 ACGTGTCTACATACATCCAATTTAGAA 58.745 33.333 0.00 0.00 0.00 2.10
3049 7044 7.778083 ACGTGTCTACATACATCCAATTTAGA 58.222 34.615 0.00 0.00 0.00 2.10
3050 7045 8.420374 AACGTGTCTACATACATCCAATTTAG 57.580 34.615 0.00 0.00 0.00 1.85
3051 7046 8.780846 AAACGTGTCTACATACATCCAATTTA 57.219 30.769 0.00 0.00 0.00 1.40
3052 7047 7.681939 AAACGTGTCTACATACATCCAATTT 57.318 32.000 0.00 0.00 0.00 1.82
3053 7048 7.681939 AAAACGTGTCTACATACATCCAATT 57.318 32.000 0.00 0.00 0.00 2.32
3054 7049 8.038944 ACTAAAACGTGTCTACATACATCCAAT 58.961 33.333 0.00 0.00 0.00 3.16
3055 7050 7.329962 CACTAAAACGTGTCTACATACATCCAA 59.670 37.037 0.00 0.00 0.00 3.53
3056 7051 6.809689 CACTAAAACGTGTCTACATACATCCA 59.190 38.462 0.00 0.00 0.00 3.41
3057 7052 6.810182 ACACTAAAACGTGTCTACATACATCC 59.190 38.462 0.00 0.00 44.32 3.51
3058 7053 7.327761 ACACACTAAAACGTGTCTACATACATC 59.672 37.037 0.00 0.00 45.74 3.06
3072 7067 5.623335 TGAGTGAACAAACACACTAAAACG 58.377 37.500 0.00 0.00 45.54 3.60
3074 7069 8.300286 TGAAATGAGTGAACAAACACACTAAAA 58.700 29.630 0.00 0.00 45.54 1.52
3087 7082 4.929808 ACATACGGACTGAAATGAGTGAAC 59.070 41.667 7.93 0.00 0.00 3.18
3104 7099 9.869757 TGGATATTTCAATATGGACTACATACG 57.130 33.333 0.00 0.00 44.41 3.06
3134 7129 4.770531 CCCTCCATCCACTATTATACGACA 59.229 45.833 0.00 0.00 0.00 4.35
3135 7130 5.014858 TCCCTCCATCCACTATTATACGAC 58.985 45.833 0.00 0.00 0.00 4.34
3138 7133 7.122948 CACTACTCCCTCCATCCACTATTATAC 59.877 44.444 0.00 0.00 0.00 1.47
3151 7146 3.053095 CCTACTAACCACTACTCCCTCCA 60.053 52.174 0.00 0.00 0.00 3.86
3164 7159 9.857957 GTAGAATACAATATGCTCCTACTAACC 57.142 37.037 0.00 0.00 42.43 2.85
3211 7208 3.415212 TCTCAAAGCAACTTGGGATGAG 58.585 45.455 0.00 0.00 30.65 2.90
3243 7246 7.575414 TTTCCTATGCTTTAAACAAGACACA 57.425 32.000 0.00 0.00 0.00 3.72
3260 7264 7.315890 GTGTTAAGCTGCAAGAAATTTCCTAT 58.684 34.615 14.61 0.00 34.07 2.57
3268 7272 4.142578 TGTTTCGTGTTAAGCTGCAAGAAA 60.143 37.500 16.78 16.78 39.44 2.52
3358 7790 1.448717 GCGAGGAAAGAGGAGCCAC 60.449 63.158 0.00 0.00 0.00 5.01
3364 7796 1.123928 ATGGTAGGCGAGGAAAGAGG 58.876 55.000 0.00 0.00 0.00 3.69
3407 7839 1.402107 AACAAAGCAGCCACCAAGGG 61.402 55.000 0.00 0.00 38.09 3.95
3480 7912 4.399303 GCAAACAGTATGGGAAAGTGCTAT 59.601 41.667 0.00 0.00 43.62 2.97
3485 7917 3.832527 ACAGCAAACAGTATGGGAAAGT 58.167 40.909 0.00 0.00 43.62 2.66
3493 7925 8.960591 AGCAGAATTTTATACAGCAAACAGTAT 58.039 29.630 0.00 0.00 33.52 2.12
3659 8101 5.708948 TGAAATGCTTATTTTCCTTCCACG 58.291 37.500 0.00 0.00 33.15 4.94
3806 8250 7.115805 GCAATTTTTAGAACCTCGGGTTAAAAG 59.884 37.037 8.11 5.05 46.95 2.27
3856 8305 0.847373 TAACTGCAACCAACCCAGGA 59.153 50.000 0.00 0.00 0.00 3.86
3858 8307 1.608590 CAGTAACTGCAACCAACCCAG 59.391 52.381 0.00 0.00 0.00 4.45
3861 8310 2.949644 ACTTCAGTAACTGCAACCAACC 59.050 45.455 0.00 0.00 0.00 3.77
3862 8311 5.744666 TTACTTCAGTAACTGCAACCAAC 57.255 39.130 0.00 0.00 35.75 3.77
3863 8312 6.952773 ATTTACTTCAGTAACTGCAACCAA 57.047 33.333 0.00 0.00 39.92 3.67
3864 8313 6.952773 AATTTACTTCAGTAACTGCAACCA 57.047 33.333 0.00 0.00 39.92 3.67
3898 8359 6.371825 AGTGCCTATGTTAGTTGTTTCTAAGC 59.628 38.462 0.00 0.00 31.69 3.09
3950 8436 2.610374 TGAAGAAACACCGTACAACAGC 59.390 45.455 0.00 0.00 0.00 4.40
3956 8442 2.097056 GCGAACTGAAGAAACACCGTAC 60.097 50.000 0.00 0.00 0.00 3.67
3958 8444 0.935196 GCGAACTGAAGAAACACCGT 59.065 50.000 0.00 0.00 0.00 4.83
3959 8445 1.217882 AGCGAACTGAAGAAACACCG 58.782 50.000 0.00 0.00 0.00 4.94
3960 8446 3.391049 ACTAGCGAACTGAAGAAACACC 58.609 45.455 0.00 0.00 0.00 4.16
3961 8447 4.049186 TGACTAGCGAACTGAAGAAACAC 58.951 43.478 0.00 0.00 0.00 3.32
3963 8449 5.847670 AATGACTAGCGAACTGAAGAAAC 57.152 39.130 0.00 0.00 0.00 2.78
3965 8451 5.538118 TCAAATGACTAGCGAACTGAAGAA 58.462 37.500 0.00 0.00 0.00 2.52
3966 8452 5.134202 TCAAATGACTAGCGAACTGAAGA 57.866 39.130 0.00 0.00 0.00 2.87
3967 8453 7.706281 ATATCAAATGACTAGCGAACTGAAG 57.294 36.000 0.00 0.00 0.00 3.02
3968 8454 8.194769 TGTATATCAAATGACTAGCGAACTGAA 58.805 33.333 0.00 0.00 0.00 3.02
3969 8455 7.712797 TGTATATCAAATGACTAGCGAACTGA 58.287 34.615 0.00 0.00 0.00 3.41
3971 8457 6.642950 GCTGTATATCAAATGACTAGCGAACT 59.357 38.462 0.00 0.00 0.00 3.01
3972 8458 6.642950 AGCTGTATATCAAATGACTAGCGAAC 59.357 38.462 0.00 0.00 0.00 3.95
3973 8459 6.749139 AGCTGTATATCAAATGACTAGCGAA 58.251 36.000 0.00 0.00 0.00 4.70
3974 8460 6.016276 TGAGCTGTATATCAAATGACTAGCGA 60.016 38.462 0.00 0.00 0.00 4.93
3975 8461 6.152379 TGAGCTGTATATCAAATGACTAGCG 58.848 40.000 0.00 0.00 0.00 4.26
3976 8462 9.814899 ATATGAGCTGTATATCAAATGACTAGC 57.185 33.333 0.00 0.00 0.00 3.42
3978 8464 9.591792 GCATATGAGCTGTATATCAAATGACTA 57.408 33.333 6.97 0.00 0.00 2.59
3979 8465 8.319881 AGCATATGAGCTGTATATCAAATGACT 58.680 33.333 6.97 0.00 44.66 3.41
3981 8467 8.943002 CAAGCATATGAGCTGTATATCAAATGA 58.057 33.333 6.97 0.00 45.89 2.57
3982 8468 8.182227 CCAAGCATATGAGCTGTATATCAAATG 58.818 37.037 6.97 0.00 45.89 2.32
3988 8474 6.364568 TCACCAAGCATATGAGCTGTATAT 57.635 37.500 6.97 0.00 45.89 0.86
3990 8476 4.694760 TCACCAAGCATATGAGCTGTAT 57.305 40.909 6.97 0.00 45.89 2.29
3991 8477 4.694760 ATCACCAAGCATATGAGCTGTA 57.305 40.909 6.97 0.00 45.89 2.74
4007 8493 9.565213 CTTTTGATTCTTTGTCATCTTATCACC 57.435 33.333 0.00 0.00 0.00 4.02
4013 8499 8.242729 ACTTCCTTTTGATTCTTTGTCATCTT 57.757 30.769 0.00 0.00 0.00 2.40
4015 8501 9.780413 GATACTTCCTTTTGATTCTTTGTCATC 57.220 33.333 0.00 0.00 0.00 2.92
4027 8513 7.769044 CCCGAGAAATAAGATACTTCCTTTTGA 59.231 37.037 0.00 0.00 0.00 2.69
4028 8514 7.553044 ACCCGAGAAATAAGATACTTCCTTTTG 59.447 37.037 0.00 0.00 0.00 2.44
4029 8515 7.631007 ACCCGAGAAATAAGATACTTCCTTTT 58.369 34.615 0.00 0.00 0.00 2.27
4033 8544 7.652507 CAGTAACCCGAGAAATAAGATACTTCC 59.347 40.741 0.00 0.00 0.00 3.46
4039 8550 9.765795 CTAAATCAGTAACCCGAGAAATAAGAT 57.234 33.333 0.00 0.00 0.00 2.40
4056 8567 7.378181 CCAAAATTTGGCAGTACTAAATCAGT 58.622 34.615 12.23 0.00 45.17 3.41
4078 8589 2.605837 TTGTAGTGTGCGAAGTCCAA 57.394 45.000 0.00 0.00 0.00 3.53
4107 8621 2.715046 CCACCTGTGATGTGCTTGTAT 58.285 47.619 0.00 0.00 32.30 2.29
4198 8712 5.595542 AGTGTGATATGGGGAATCAACAATG 59.404 40.000 0.00 0.00 35.23 2.82
4199 8713 5.769835 AGTGTGATATGGGGAATCAACAAT 58.230 37.500 0.00 0.00 35.23 2.71
4225 8739 6.005823 TCAGGACTTGATCATTGTTCAACAT 58.994 36.000 0.00 0.00 0.00 2.71
4230 8744 7.798596 ACATATCAGGACTTGATCATTGTTC 57.201 36.000 2.91 0.00 43.03 3.18
4323 8839 5.697473 TTAACAATGCGAGGAATTTGTCA 57.303 34.783 0.00 0.00 31.42 3.58
4430 8961 3.003068 CCTTCGATGCCACATTCATTCTC 59.997 47.826 0.00 0.00 0.00 2.87
4453 8984 0.859232 GCATACCGGCAGTAACATCG 59.141 55.000 0.00 0.00 33.70 3.84
4533 9064 1.852942 TCAACTGTGTTCGTGCTCTC 58.147 50.000 0.00 0.00 0.00 3.20
4536 9067 4.554723 GCTAATTTCAACTGTGTTCGTGCT 60.555 41.667 0.00 0.00 0.00 4.40
4539 9070 4.574828 ACAGCTAATTTCAACTGTGTTCGT 59.425 37.500 0.00 0.00 41.63 3.85
4541 9072 6.291796 GCAAACAGCTAATTTCAACTGTGTTC 60.292 38.462 0.00 0.00 42.34 3.18
4547 9085 5.846203 ACATGCAAACAGCTAATTTCAACT 58.154 33.333 0.00 0.00 45.94 3.16
4587 9125 4.715534 TCATGGAACCCACAGAGTTAAA 57.284 40.909 0.00 0.00 35.80 1.52
4591 9129 3.198635 CAGTATCATGGAACCCACAGAGT 59.801 47.826 0.00 0.00 35.80 3.24
4594 9132 3.634397 ACAGTATCATGGAACCCACAG 57.366 47.619 0.00 0.00 35.80 3.66
4597 9135 5.428457 ACAGAATACAGTATCATGGAACCCA 59.572 40.000 8.93 0.00 38.19 4.51
4598 9136 5.930135 ACAGAATACAGTATCATGGAACCC 58.070 41.667 8.93 0.00 0.00 4.11
4606 9144 6.512903 GCGCTAGTGTACAGAATACAGTATCA 60.513 42.308 0.00 0.00 34.13 2.15
4769 9311 4.695396 GTTCATCATGAGCTCATCTCTGT 58.305 43.478 26.44 2.36 42.38 3.41
4819 9361 1.303074 CATGTGCACTGGTGGCTCT 60.303 57.895 19.41 0.00 0.00 4.09
4825 9367 1.556451 TCATAGCTCATGTGCACTGGT 59.444 47.619 20.92 12.91 35.96 4.00
4839 9391 7.171508 TCAGATTTCACCGATTTGTATCATAGC 59.828 37.037 0.00 0.00 0.00 2.97
4847 9399 7.065085 CACTTCTATCAGATTTCACCGATTTGT 59.935 37.037 0.00 0.00 0.00 2.83
4856 9408 7.232118 TGAGTGACACTTCTATCAGATTTCA 57.768 36.000 10.01 0.00 0.00 2.69
4895 9464 5.785243 TGTTACCAACACGACATCTTATCA 58.215 37.500 0.00 0.00 36.25 2.15
4960 9576 4.038402 ACCTGCCTTTTCTTGTCAAATCTG 59.962 41.667 0.00 0.00 0.00 2.90
4966 9582 6.061022 TGATATACCTGCCTTTTCTTGTCA 57.939 37.500 0.00 0.00 0.00 3.58
5014 9645 4.685924 CCTTGCATGATCAATGTTAACCC 58.314 43.478 0.00 0.00 38.65 4.11
5389 10021 1.002011 GGAGCGCTTCTTCCCCTTT 60.002 57.895 13.26 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.