Multiple sequence alignment - TraesCS4A01G251600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G251600 chr4A 100.000 4858 0 0 1 4858 563053786 563048929 0.000000e+00 8972
1 TraesCS4A01G251600 chr4B 94.775 1244 61 3 1857 3100 54744378 54743139 0.000000e+00 1934
2 TraesCS4A01G251600 chr4B 91.272 1077 57 19 743 1792 54745441 54744375 0.000000e+00 1434
3 TraesCS4A01G251600 chr4B 90.536 877 56 13 3512 4376 54742656 54741795 0.000000e+00 1134
4 TraesCS4A01G251600 chr4B 95.035 423 17 2 3102 3522 54743103 54742683 0.000000e+00 662
5 TraesCS4A01G251600 chr4B 89.776 313 27 4 4549 4856 54741781 54741469 3.520000e-106 396
6 TraesCS4A01G251600 chr4B 81.513 357 57 7 3 352 54746256 54745902 7.960000e-73 285
7 TraesCS4A01G251600 chr4D 92.436 1322 74 13 1790 3100 37517213 37515907 0.000000e+00 1864
8 TraesCS4A01G251600 chr4D 89.977 1307 69 14 3543 4841 37515398 37514146 0.000000e+00 1631
9 TraesCS4A01G251600 chr4D 90.632 950 39 17 789 1723 37518123 37517209 0.000000e+00 1216
10 TraesCS4A01G251600 chr4D 95.249 421 18 2 3102 3522 37515872 37515454 0.000000e+00 665
11 TraesCS4A01G251600 chr4D 92.840 405 20 4 4005 4400 37290927 37291331 3.260000e-161 579
12 TraesCS4A01G251600 chr4D 92.884 267 18 1 4393 4658 37339573 37339839 2.120000e-103 387
13 TraesCS4A01G251600 chr2B 80.729 192 28 8 4523 4709 11463681 11463868 1.820000e-29 141
14 TraesCS4A01G251600 chr2B 80.105 191 30 8 4523 4709 12948354 12948168 8.480000e-28 135
15 TraesCS4A01G251600 chr6D 79.275 193 29 6 4523 4709 414005155 414005342 1.840000e-24 124
16 TraesCS4A01G251600 chr5A 82.270 141 20 3 4521 4660 464631306 464631170 3.070000e-22 117
17 TraesCS4A01G251600 chrUn 77.487 191 39 3 4521 4709 34306543 34306355 1.430000e-20 111
18 TraesCS4A01G251600 chrUn 77.487 191 39 3 4521 4709 330415553 330415365 1.430000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G251600 chr4A 563048929 563053786 4857 True 8972.000000 8972 100.0000 1 4858 1 chr4A.!!$R1 4857
1 TraesCS4A01G251600 chr4B 54741469 54746256 4787 True 974.166667 1934 90.4845 3 4856 6 chr4B.!!$R1 4853
2 TraesCS4A01G251600 chr4D 37514146 37518123 3977 True 1344.000000 1864 92.0735 789 4841 4 chr4D.!!$R1 4052

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 693 0.032952 TGTCTTTTGGGAGTCGGTCG 59.967 55.000 0.00 0.00 0.00 4.79 F
1320 1422 0.938008 GCAGTAGCTATTTGCCGTCC 59.062 55.000 17.70 0.00 44.23 4.79 F
1771 1892 0.809385 TGTGCTGTAGCTACTCGGTC 59.191 55.000 23.84 11.32 42.66 4.79 F
3022 3151 2.035961 ACTCTGTCAATGCTACACGTGT 59.964 45.455 26.52 26.52 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1573 1689 0.234625 GCGATTGTCAAGCAACACGA 59.765 50.0 1.19 0.0 40.28 4.35 R
2396 2517 2.289002 CGGAGTGGATTTAGCATCAAGC 59.711 50.0 0.00 0.0 46.19 4.01 R
3510 3676 0.607620 ACAGCACCTCTTCTCTCAGC 59.392 55.0 0.00 0.0 0.00 4.26 R
4138 4341 1.034292 GGGAGTCCTGCATTTGAGCC 61.034 60.0 9.58 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 66 2.164422 GCAAACCTAGACAATGAAGGGC 59.836 50.000 0.00 0.00 34.52 5.19
66 70 3.690460 ACCTAGACAATGAAGGGCAAAG 58.310 45.455 0.00 0.00 34.52 2.77
69 73 4.636206 CCTAGACAATGAAGGGCAAAGTAC 59.364 45.833 0.00 0.00 0.00 2.73
86 90 3.123273 AGTACCCAACTGATAAGGGCAT 58.877 45.455 0.00 0.00 46.88 4.40
87 91 2.736670 ACCCAACTGATAAGGGCATC 57.263 50.000 0.00 0.00 46.88 3.91
96 100 6.949117 ACTGATAAGGGCATCTATGAGAAT 57.051 37.500 0.00 0.00 0.00 2.40
112 116 3.830178 TGAGAATGTGGACTCTTTACCGA 59.170 43.478 0.00 0.00 34.65 4.69
117 121 3.698289 TGTGGACTCTTTACCGAGAGAT 58.302 45.455 8.75 0.00 44.78 2.75
126 130 7.484975 ACTCTTTACCGAGAGATATTGACTTG 58.515 38.462 8.75 0.00 44.78 3.16
142 146 6.959639 TTGACTTGGATTAACTTTCTTGCT 57.040 33.333 0.00 0.00 0.00 3.91
144 148 7.672983 TGACTTGGATTAACTTTCTTGCTAG 57.327 36.000 0.00 0.00 0.00 3.42
147 151 8.691661 ACTTGGATTAACTTTCTTGCTAGAAA 57.308 30.769 19.83 19.83 45.68 2.52
163 167 8.761575 TTGCTAGAAAATTGATCAACAAATCC 57.238 30.769 11.07 0.00 42.03 3.01
168 172 8.413309 AGAAAATTGATCAACAAATCCTCTCA 57.587 30.769 11.07 0.00 42.03 3.27
169 173 8.863086 AGAAAATTGATCAACAAATCCTCTCAA 58.137 29.630 11.07 0.00 42.03 3.02
174 178 3.754965 TCAACAAATCCTCTCAAGGTGG 58.245 45.455 0.00 0.00 43.82 4.61
179 183 1.747444 ATCCTCTCAAGGTGGTTGGT 58.253 50.000 0.00 0.00 43.82 3.67
181 185 1.975680 TCCTCTCAAGGTGGTTGGTAC 59.024 52.381 0.00 0.00 43.82 3.34
186 194 4.798882 TCTCAAGGTGGTTGGTACATTTT 58.201 39.130 0.00 0.00 39.30 1.82
187 195 5.205056 TCTCAAGGTGGTTGGTACATTTTT 58.795 37.500 0.00 0.00 39.30 1.94
216 224 7.695055 TGAGGATTTTAGTAGGGTTTGAATCA 58.305 34.615 0.00 0.00 0.00 2.57
227 235 9.374711 AGTAGGGTTTGAATCAAATAGGAAAAA 57.625 29.630 11.87 0.00 35.74 1.94
259 267 8.293157 GCATACCTCCTTAATAATTCAAAGAGC 58.707 37.037 0.00 0.00 0.00 4.09
260 268 9.342308 CATACCTCCTTAATAATTCAAAGAGCA 57.658 33.333 0.00 0.00 0.00 4.26
264 272 8.348507 CCTCCTTAATAATTCAAAGAGCATCAC 58.651 37.037 0.00 0.00 37.82 3.06
267 275 8.133627 CCTTAATAATTCAAAGAGCATCACAGG 58.866 37.037 0.00 0.00 37.82 4.00
268 276 6.461110 AATAATTCAAAGAGCATCACAGGG 57.539 37.500 0.00 0.00 37.82 4.45
277 285 5.121380 AGAGCATCACAGGGAAATGTTAT 57.879 39.130 0.00 0.00 37.82 1.89
279 287 6.662755 AGAGCATCACAGGGAAATGTTATTA 58.337 36.000 0.00 0.00 37.82 0.98
287 295 9.921637 TCACAGGGAAATGTTATTAAAAATCAC 57.078 29.630 0.00 0.00 0.00 3.06
296 304 6.823531 TGTTATTAAAAATCACGTGTCTCGG 58.176 36.000 16.51 0.00 44.69 4.63
301 309 5.738118 AAAAATCACGTGTCTCGGTAAAA 57.262 34.783 16.51 0.00 44.69 1.52
302 310 4.985044 AAATCACGTGTCTCGGTAAAAG 57.015 40.909 16.51 0.00 44.69 2.27
303 311 3.655276 ATCACGTGTCTCGGTAAAAGT 57.345 42.857 16.51 0.00 44.69 2.66
304 312 4.771590 ATCACGTGTCTCGGTAAAAGTA 57.228 40.909 16.51 0.00 44.69 2.24
305 313 4.771590 TCACGTGTCTCGGTAAAAGTAT 57.228 40.909 16.51 0.00 44.69 2.12
307 315 3.855950 CACGTGTCTCGGTAAAAGTATCC 59.144 47.826 7.58 0.00 44.69 2.59
311 319 5.061808 CGTGTCTCGGTAAAAGTATCCAAAG 59.938 44.000 0.00 0.00 35.71 2.77
317 325 5.642063 TCGGTAAAAGTATCCAAAGAGCTTG 59.358 40.000 0.00 0.00 34.52 4.01
331 339 7.193377 CAAAGAGCTTGGTTGCAAAATTATT 57.807 32.000 0.00 0.00 34.99 1.40
338 346 6.018016 GCTTGGTTGCAAAATTATTGTGTTCT 60.018 34.615 0.00 0.00 0.00 3.01
339 347 6.841443 TGGTTGCAAAATTATTGTGTTCTG 57.159 33.333 0.00 0.00 0.00 3.02
352 360 9.725019 ATTATTGTGTTCTGAAATGAGTAGTCA 57.275 29.630 1.95 1.95 37.02 3.41
353 361 9.554395 TTATTGTGTTCTGAAATGAGTAGTCAA 57.446 29.630 3.93 0.00 35.88 3.18
354 362 7.857734 TTGTGTTCTGAAATGAGTAGTCAAA 57.142 32.000 3.93 0.00 35.88 2.69
356 364 7.864686 TGTGTTCTGAAATGAGTAGTCAAATG 58.135 34.615 3.93 0.00 35.88 2.32
357 365 7.714813 TGTGTTCTGAAATGAGTAGTCAAATGA 59.285 33.333 3.93 0.00 35.88 2.57
361 416 4.943705 TGAAATGAGTAGTCAAATGAGGGC 59.056 41.667 3.93 0.00 35.88 5.19
379 434 2.814336 GGGCAACTTCACTTCTGTTAGG 59.186 50.000 0.00 0.00 0.00 2.69
380 435 2.814336 GGCAACTTCACTTCTGTTAGGG 59.186 50.000 0.00 0.00 0.00 3.53
381 436 3.496160 GGCAACTTCACTTCTGTTAGGGA 60.496 47.826 0.00 0.00 0.00 4.20
382 437 4.327680 GCAACTTCACTTCTGTTAGGGAT 58.672 43.478 0.00 0.00 0.00 3.85
383 438 4.762251 GCAACTTCACTTCTGTTAGGGATT 59.238 41.667 0.00 0.00 0.00 3.01
385 440 4.911390 ACTTCACTTCTGTTAGGGATTGG 58.089 43.478 0.00 0.00 0.00 3.16
386 441 4.351111 ACTTCACTTCTGTTAGGGATTGGT 59.649 41.667 0.00 0.00 0.00 3.67
387 442 4.993705 TCACTTCTGTTAGGGATTGGTT 57.006 40.909 0.00 0.00 0.00 3.67
388 443 4.651778 TCACTTCTGTTAGGGATTGGTTG 58.348 43.478 0.00 0.00 0.00 3.77
389 444 3.191371 CACTTCTGTTAGGGATTGGTTGC 59.809 47.826 0.00 0.00 0.00 4.17
390 445 3.181434 ACTTCTGTTAGGGATTGGTTGCA 60.181 43.478 0.00 0.00 0.00 4.08
391 446 2.790433 TCTGTTAGGGATTGGTTGCAC 58.210 47.619 0.00 0.00 0.00 4.57
392 447 1.468520 CTGTTAGGGATTGGTTGCACG 59.531 52.381 0.00 0.00 0.00 5.34
393 448 0.808755 GTTAGGGATTGGTTGCACGG 59.191 55.000 0.00 0.00 0.00 4.94
394 449 0.963355 TTAGGGATTGGTTGCACGGC 60.963 55.000 0.00 0.00 0.00 5.68
395 450 2.130821 TAGGGATTGGTTGCACGGCA 62.131 55.000 0.00 0.00 36.47 5.69
396 451 2.350458 GGGATTGGTTGCACGGCAT 61.350 57.895 0.00 0.00 38.76 4.40
397 452 1.153784 GGATTGGTTGCACGGCATG 60.154 57.895 0.00 0.00 38.76 4.06
398 453 1.153784 GATTGGTTGCACGGCATGG 60.154 57.895 0.00 0.00 38.76 3.66
414 469 4.178545 GCATGGCCAATATCATTGGTAC 57.821 45.455 10.96 11.84 41.53 3.34
415 470 3.056607 GCATGGCCAATATCATTGGTACC 60.057 47.826 10.96 4.43 41.53 3.34
416 471 3.961484 TGGCCAATATCATTGGTACCA 57.039 42.857 11.60 11.60 41.53 3.25
425 480 2.880770 ATTGGTACCAATGGCACCG 58.119 52.632 34.28 0.00 44.05 4.94
426 481 0.329931 ATTGGTACCAATGGCACCGA 59.670 50.000 34.28 13.83 44.05 4.69
431 486 0.398696 TACCAATGGCACCGACAACT 59.601 50.000 0.00 0.00 0.00 3.16
432 487 0.398696 ACCAATGGCACCGACAACTA 59.601 50.000 0.00 0.00 0.00 2.24
437 492 1.218316 GGCACCGACAACTAGAGGG 59.782 63.158 0.00 0.00 0.00 4.30
455 510 1.169034 GGAGGGGATTGCATCGCTTC 61.169 60.000 13.03 13.03 44.21 3.86
456 511 1.152881 AGGGGATTGCATCGCTTCC 60.153 57.895 11.12 0.00 41.49 3.46
464 519 1.065273 GCATCGCTTCCCATGCTTG 59.935 57.895 0.00 0.00 41.93 4.01
466 521 2.475466 ATCGCTTCCCATGCTTGCG 61.475 57.895 12.17 12.17 46.71 4.85
469 524 2.787249 CTTCCCATGCTTGCGTCG 59.213 61.111 0.00 0.00 0.00 5.12
484 539 1.226030 CGTCGTGGGAGGTTTGGAAC 61.226 60.000 0.00 0.00 0.00 3.62
485 540 0.108019 GTCGTGGGAGGTTTGGAACT 59.892 55.000 0.00 0.00 0.00 3.01
486 541 0.107831 TCGTGGGAGGTTTGGAACTG 59.892 55.000 0.00 0.00 0.00 3.16
487 542 0.107831 CGTGGGAGGTTTGGAACTGA 59.892 55.000 0.00 0.00 0.00 3.41
488 543 1.878102 CGTGGGAGGTTTGGAACTGAG 60.878 57.143 0.00 0.00 0.00 3.35
489 544 1.143073 GTGGGAGGTTTGGAACTGAGT 59.857 52.381 0.00 0.00 0.00 3.41
490 545 1.142870 TGGGAGGTTTGGAACTGAGTG 59.857 52.381 0.00 0.00 0.00 3.51
491 546 1.143073 GGGAGGTTTGGAACTGAGTGT 59.857 52.381 0.00 0.00 0.00 3.55
493 548 3.181448 GGGAGGTTTGGAACTGAGTGTAA 60.181 47.826 0.00 0.00 0.00 2.41
494 549 4.506802 GGGAGGTTTGGAACTGAGTGTAAT 60.507 45.833 0.00 0.00 0.00 1.89
495 550 4.455877 GGAGGTTTGGAACTGAGTGTAATG 59.544 45.833 0.00 0.00 0.00 1.90
496 551 3.821033 AGGTTTGGAACTGAGTGTAATGC 59.179 43.478 0.00 0.00 0.00 3.56
498 553 3.394674 TTGGAACTGAGTGTAATGCGA 57.605 42.857 0.00 0.00 0.00 5.10
499 554 2.959516 TGGAACTGAGTGTAATGCGAG 58.040 47.619 0.00 0.00 0.00 5.03
500 555 2.299013 TGGAACTGAGTGTAATGCGAGT 59.701 45.455 0.00 0.00 0.00 4.18
501 556 2.668457 GGAACTGAGTGTAATGCGAGTG 59.332 50.000 0.00 0.00 0.00 3.51
502 557 3.318017 GAACTGAGTGTAATGCGAGTGT 58.682 45.455 0.00 0.00 0.00 3.55
508 563 4.688879 TGAGTGTAATGCGAGTGTTTTAGG 59.311 41.667 0.00 0.00 0.00 2.69
526 581 3.485463 AGGAAAACTTCGTCCATGTCA 57.515 42.857 0.00 0.00 36.28 3.58
532 587 1.416401 ACTTCGTCCATGTCAGGTGTT 59.584 47.619 0.00 0.00 0.00 3.32
534 589 3.254060 CTTCGTCCATGTCAGGTGTTAG 58.746 50.000 0.00 0.00 0.00 2.34
535 590 1.067142 TCGTCCATGTCAGGTGTTAGC 60.067 52.381 0.00 0.00 0.00 3.09
554 611 6.146510 TGTTAGCAGGTGTAACATTAAAGACG 59.853 38.462 0.00 0.00 39.98 4.18
560 617 3.373130 GTGTAACATTAAAGACGAGGCCC 59.627 47.826 0.00 0.00 36.32 5.80
561 618 2.871096 AACATTAAAGACGAGGCCCA 57.129 45.000 0.00 0.00 0.00 5.36
562 619 2.871096 ACATTAAAGACGAGGCCCAA 57.129 45.000 0.00 0.00 0.00 4.12
564 621 3.279434 ACATTAAAGACGAGGCCCAATC 58.721 45.455 0.00 0.00 0.00 2.67
565 622 2.413310 TTAAAGACGAGGCCCAATCC 57.587 50.000 0.00 0.00 0.00 3.01
584 641 0.249699 CGTGGGTTATAGCGGATGCA 60.250 55.000 0.00 0.00 46.23 3.96
586 643 1.873591 GTGGGTTATAGCGGATGCAAG 59.126 52.381 0.00 0.00 46.23 4.01
588 645 2.224281 TGGGTTATAGCGGATGCAAGAG 60.224 50.000 0.00 0.00 46.23 2.85
598 655 3.119708 GCGGATGCAAGAGATTTGAGTTT 60.120 43.478 0.00 0.00 42.15 2.66
599 656 4.409570 CGGATGCAAGAGATTTGAGTTTG 58.590 43.478 0.00 0.00 0.00 2.93
600 657 4.154737 CGGATGCAAGAGATTTGAGTTTGA 59.845 41.667 0.00 0.00 0.00 2.69
601 658 5.163683 CGGATGCAAGAGATTTGAGTTTGAT 60.164 40.000 0.00 0.00 0.00 2.57
602 659 6.264088 GGATGCAAGAGATTTGAGTTTGATC 58.736 40.000 0.00 0.00 0.00 2.92
603 660 5.633830 TGCAAGAGATTTGAGTTTGATCC 57.366 39.130 0.00 0.00 0.00 3.36
604 661 4.460382 TGCAAGAGATTTGAGTTTGATCCC 59.540 41.667 0.00 0.00 0.00 3.85
605 662 4.437930 GCAAGAGATTTGAGTTTGATCCCG 60.438 45.833 0.00 0.00 0.00 5.14
607 664 2.356069 GAGATTTGAGTTTGATCCCGCC 59.644 50.000 0.00 0.00 0.00 6.13
608 665 1.064060 GATTTGAGTTTGATCCCGCCG 59.936 52.381 0.00 0.00 0.00 6.46
609 666 1.582610 TTTGAGTTTGATCCCGCCGC 61.583 55.000 0.00 0.00 0.00 6.53
610 667 2.435938 GAGTTTGATCCCGCCGCA 60.436 61.111 0.00 0.00 0.00 5.69
611 668 2.033448 AGTTTGATCCCGCCGCAA 59.967 55.556 0.00 0.00 0.00 4.85
612 669 1.982073 GAGTTTGATCCCGCCGCAAG 61.982 60.000 0.00 0.00 0.00 4.01
613 670 2.038269 GTTTGATCCCGCCGCAAGA 61.038 57.895 0.00 0.00 43.02 3.02
614 671 1.745115 TTTGATCCCGCCGCAAGAG 60.745 57.895 0.00 0.00 43.02 2.85
615 672 2.463589 TTTGATCCCGCCGCAAGAGT 62.464 55.000 0.00 0.00 43.02 3.24
616 673 2.892425 GATCCCGCCGCAAGAGTG 60.892 66.667 0.00 0.00 43.02 3.51
617 674 3.665675 GATCCCGCCGCAAGAGTGT 62.666 63.158 0.00 0.00 43.02 3.55
619 676 4.988598 CCCGCCGCAAGAGTGTGT 62.989 66.667 0.00 0.00 43.02 3.72
623 680 1.498865 CGCCGCAAGAGTGTGTCTTT 61.499 55.000 0.00 0.00 43.54 2.52
625 682 1.597937 GCCGCAAGAGTGTGTCTTTTG 60.598 52.381 0.00 0.00 43.54 2.44
633 690 1.202651 AGTGTGTCTTTTGGGAGTCGG 60.203 52.381 0.00 0.00 0.00 4.79
636 693 0.032952 TGTCTTTTGGGAGTCGGTCG 59.967 55.000 0.00 0.00 0.00 4.79
649 708 4.261741 GGAGTCGGTCGCCTTGTAATTATA 60.262 45.833 0.00 0.00 33.15 0.98
652 711 6.618811 AGTCGGTCGCCTTGTAATTATATAG 58.381 40.000 0.00 0.00 0.00 1.31
658 717 7.544915 GGTCGCCTTGTAATTATATAGAACCTC 59.455 40.741 0.00 0.00 0.00 3.85
662 721 9.438228 GCCTTGTAATTATATAGAACCTCCTTC 57.562 37.037 0.00 0.00 0.00 3.46
683 742 7.886970 TCCTTCTTTGATGAGATGAGACAAATT 59.113 33.333 0.00 0.00 31.69 1.82
684 743 8.521176 CCTTCTTTGATGAGATGAGACAAATTT 58.479 33.333 0.00 0.00 31.69 1.82
705 764 0.948678 TTGCCTCCGGTTCGAAAAAG 59.051 50.000 0.00 0.00 0.00 2.27
707 766 1.271163 TGCCTCCGGTTCGAAAAAGAT 60.271 47.619 0.00 0.00 0.00 2.40
708 767 1.397343 GCCTCCGGTTCGAAAAAGATC 59.603 52.381 0.00 0.00 0.00 2.75
709 768 2.007608 CCTCCGGTTCGAAAAAGATCC 58.992 52.381 0.00 0.00 0.00 3.36
710 769 2.007608 CTCCGGTTCGAAAAAGATCCC 58.992 52.381 0.00 0.00 0.00 3.85
717 780 4.323257 GGTTCGAAAAAGATCCCTACTCCA 60.323 45.833 0.00 0.00 0.00 3.86
720 783 5.428253 TCGAAAAAGATCCCTACTCCAATG 58.572 41.667 0.00 0.00 0.00 2.82
723 786 5.779241 AAAAGATCCCTACTCCAATGTCA 57.221 39.130 0.00 0.00 0.00 3.58
740 803 7.706179 TCCAATGTCATTTTCTTTCTTGAACAC 59.294 33.333 0.00 0.00 0.00 3.32
758 848 6.591935 TGAACACCTTAGTCATGTTTTCTCT 58.408 36.000 0.00 0.00 36.70 3.10
773 863 5.361571 TGTTTTCTCTCCCAAGGTAAAAACC 59.638 40.000 0.00 0.00 0.00 3.27
783 873 6.099845 TCCCAAGGTAAAAACCAAGCATAAAA 59.900 34.615 0.00 0.00 0.00 1.52
811 901 7.517614 TTCATTTATGCCACTCACAAAGTAA 57.482 32.000 0.00 0.00 36.07 2.24
820 910 4.401202 CCACTCACAAAGTAAAGGGTGTTT 59.599 41.667 0.00 0.00 36.07 2.83
822 912 6.394809 CACTCACAAAGTAAAGGGTGTTTTT 58.605 36.000 0.00 0.00 36.07 1.94
825 915 5.717654 TCACAAAGTAAAGGGTGTTTTTCCT 59.282 36.000 0.00 0.00 33.17 3.36
829 919 8.764558 ACAAAGTAAAGGGTGTTTTTCCTAAAT 58.235 29.630 0.00 0.00 32.21 1.40
832 922 9.607988 AAGTAAAGGGTGTTTTTCCTAAATTTG 57.392 29.630 0.00 0.00 32.21 2.32
875 965 3.324846 TCCGGGGATAAGATGATCACAAG 59.675 47.826 0.00 0.00 30.15 3.16
1071 1169 1.303615 GTCCTCGTCCTCCTCCTCA 59.696 63.158 0.00 0.00 0.00 3.86
1277 1375 2.180276 CCAGGAGTACACCAGTAAGCT 58.820 52.381 12.17 0.00 30.67 3.74
1279 1377 3.093057 CAGGAGTACACCAGTAAGCTCT 58.907 50.000 12.17 0.00 30.67 4.09
1281 1379 4.890581 CAGGAGTACACCAGTAAGCTCTAT 59.109 45.833 12.17 0.00 30.67 1.98
1283 1381 5.103855 AGGAGTACACCAGTAAGCTCTATCT 60.104 44.000 12.17 0.00 30.67 1.98
1284 1382 6.101442 AGGAGTACACCAGTAAGCTCTATCTA 59.899 42.308 12.17 0.00 30.67 1.98
1285 1383 6.428771 GGAGTACACCAGTAAGCTCTATCTAG 59.571 46.154 4.24 0.00 30.67 2.43
1286 1384 5.766174 AGTACACCAGTAAGCTCTATCTAGC 59.234 44.000 0.00 0.00 43.11 3.42
1287 1385 3.892588 ACACCAGTAAGCTCTATCTAGCC 59.107 47.826 0.00 0.00 43.86 3.93
1288 1386 4.148838 CACCAGTAAGCTCTATCTAGCCT 58.851 47.826 0.00 0.00 43.86 4.58
1289 1387 4.217550 CACCAGTAAGCTCTATCTAGCCTC 59.782 50.000 0.00 0.00 43.86 4.70
1290 1388 4.105697 ACCAGTAAGCTCTATCTAGCCTCT 59.894 45.833 0.00 0.00 43.86 3.69
1291 1389 5.311121 ACCAGTAAGCTCTATCTAGCCTCTA 59.689 44.000 0.00 0.00 43.86 2.43
1292 1390 5.880332 CCAGTAAGCTCTATCTAGCCTCTAG 59.120 48.000 0.00 0.00 43.86 2.43
1293 1391 6.296202 CCAGTAAGCTCTATCTAGCCTCTAGA 60.296 46.154 6.08 6.08 43.86 2.43
1294 1392 6.818644 CAGTAAGCTCTATCTAGCCTCTAGAG 59.181 46.154 13.18 13.18 43.86 2.43
1295 1393 6.729100 AGTAAGCTCTATCTAGCCTCTAGAGA 59.271 42.308 21.76 0.79 43.86 3.10
1320 1422 0.938008 GCAGTAGCTATTTGCCGTCC 59.062 55.000 17.70 0.00 44.23 4.79
1328 1430 2.290641 GCTATTTGCCGTCCGATTCATT 59.709 45.455 0.00 0.00 35.15 2.57
1333 1435 1.066502 TGCCGTCCGATTCATTCAGAA 60.067 47.619 0.00 0.00 41.28 3.02
1354 1456 1.206371 ACGTTCCTAATTGACGGGGAG 59.794 52.381 9.26 0.00 40.82 4.30
1569 1685 3.557475 CCACGGTCAACAAGGTATAACCA 60.557 47.826 0.00 0.00 41.95 3.67
1571 1687 4.153475 CACGGTCAACAAGGTATAACCAAG 59.847 45.833 0.00 0.00 41.95 3.61
1573 1689 4.758165 CGGTCAACAAGGTATAACCAAGTT 59.242 41.667 0.00 0.15 41.95 2.66
1581 1697 3.749609 AGGTATAACCAAGTTCGTGTTGC 59.250 43.478 0.00 0.00 41.95 4.17
1627 1747 3.317149 GTGGGGTTAAGTGTTTCTGTTCC 59.683 47.826 0.00 0.00 0.00 3.62
1634 1754 3.146104 AGTGTTTCTGTTCCTGGATGG 57.854 47.619 0.00 0.00 37.10 3.51
1635 1755 2.443255 AGTGTTTCTGTTCCTGGATGGT 59.557 45.455 0.00 0.00 37.07 3.55
1641 1761 4.177537 TCTGTTCCTGGATGGTTTTTCA 57.822 40.909 0.00 0.00 37.07 2.69
1701 1822 8.118976 TCACCCACTATCTAATTATTAGGACG 57.881 38.462 11.54 3.74 34.00 4.79
1742 1863 2.627945 TCATACTGAACAATCGCCACC 58.372 47.619 0.00 0.00 0.00 4.61
1768 1889 2.094700 TCCTTTGTGCTGTAGCTACTCG 60.095 50.000 23.84 15.63 42.66 4.18
1771 1892 0.809385 TGTGCTGTAGCTACTCGGTC 59.191 55.000 23.84 11.32 42.66 4.79
1779 1900 2.726832 AGCTACTCGGTCACTTGAAC 57.273 50.000 0.00 0.00 0.00 3.18
1781 1902 2.364324 AGCTACTCGGTCACTTGAACAA 59.636 45.455 0.00 0.00 0.00 2.83
1785 1906 5.062308 GCTACTCGGTCACTTGAACAATTAG 59.938 44.000 0.00 0.00 0.00 1.73
1786 1907 4.957296 ACTCGGTCACTTGAACAATTAGT 58.043 39.130 0.00 0.00 0.00 2.24
1788 1909 5.820947 ACTCGGTCACTTGAACAATTAGTTT 59.179 36.000 0.00 0.00 41.51 2.66
1789 1910 6.055231 TCGGTCACTTGAACAATTAGTTTG 57.945 37.500 0.00 0.00 41.51 2.93
1801 1922 6.887626 ACAATTAGTTTGTGGTTTCGGTAT 57.112 33.333 0.00 0.00 46.80 2.73
1802 1923 7.279750 ACAATTAGTTTGTGGTTTCGGTATT 57.720 32.000 0.00 0.00 46.80 1.89
1803 1924 7.364970 ACAATTAGTTTGTGGTTTCGGTATTC 58.635 34.615 0.00 0.00 46.80 1.75
1804 1925 7.013464 ACAATTAGTTTGTGGTTTCGGTATTCA 59.987 33.333 0.00 0.00 46.80 2.57
1805 1926 7.696992 ATTAGTTTGTGGTTTCGGTATTCAT 57.303 32.000 0.00 0.00 0.00 2.57
1806 1927 5.371115 AGTTTGTGGTTTCGGTATTCATG 57.629 39.130 0.00 0.00 0.00 3.07
1815 1936 5.291128 GGTTTCGGTATTCATGTAGTGTCAG 59.709 44.000 0.00 0.00 0.00 3.51
1837 1958 8.563732 GTCAGTAGAGCAAGAGAAAAGAAAAAT 58.436 33.333 0.00 0.00 0.00 1.82
1838 1959 9.778741 TCAGTAGAGCAAGAGAAAAGAAAAATA 57.221 29.630 0.00 0.00 0.00 1.40
1842 1963 7.363431 AGAGCAAGAGAAAAGAAAAATAACCG 58.637 34.615 0.00 0.00 0.00 4.44
1844 1965 8.161699 AGCAAGAGAAAAGAAAAATAACCGTA 57.838 30.769 0.00 0.00 0.00 4.02
1845 1966 8.626526 AGCAAGAGAAAAGAAAAATAACCGTAA 58.373 29.630 0.00 0.00 0.00 3.18
1846 1967 8.688184 GCAAGAGAAAAGAAAAATAACCGTAAC 58.312 33.333 0.00 0.00 0.00 2.50
1847 1968 9.724839 CAAGAGAAAAGAAAAATAACCGTAACA 57.275 29.630 0.00 0.00 0.00 2.41
1864 1985 2.795231 ACATGCCTAGCTGTGTTCAT 57.205 45.000 0.00 0.00 0.00 2.57
1871 1992 3.067106 CCTAGCTGTGTTCATTTCGTGT 58.933 45.455 0.00 0.00 0.00 4.49
1892 2013 3.620374 GTCATGTCTGTCTAATGGCTGTG 59.380 47.826 0.00 0.00 0.00 3.66
1893 2014 2.768253 TGTCTGTCTAATGGCTGTGG 57.232 50.000 0.00 0.00 0.00 4.17
1904 2025 2.655090 TGGCTGTGGATTTGACAGAA 57.345 45.000 0.00 0.00 43.04 3.02
1916 2037 8.306761 GTGGATTTGACAGAATTAAATTCCTGT 58.693 33.333 0.00 0.00 40.13 4.00
1923 2044 8.289618 TGACAGAATTAAATTCCTGTTTCTTCG 58.710 33.333 0.00 0.00 40.13 3.79
1927 2048 8.507249 AGAATTAAATTCCTGTTTCTTCGTCTG 58.493 33.333 0.00 0.00 40.13 3.51
1979 2100 6.657541 TGGGTGTCAAAGATATTCCTGTTAAC 59.342 38.462 0.00 0.00 0.00 2.01
2067 2188 3.198417 TGCTGTGGATGAGATGTACACAT 59.802 43.478 0.00 0.00 40.76 3.21
2131 2252 4.698575 TGGGTTTCAAAGGTACATTTTGC 58.301 39.130 2.09 0.00 35.90 3.68
2142 2263 9.950858 CAAAGGTACATTTTGCATTTTAATACG 57.049 29.630 2.09 0.00 0.00 3.06
2143 2264 9.699703 AAAGGTACATTTTGCATTTTAATACGT 57.300 25.926 0.00 0.00 0.00 3.57
2144 2265 8.682128 AGGTACATTTTGCATTTTAATACGTG 57.318 30.769 0.00 0.00 0.00 4.49
2156 2277 5.699097 TTTAATACGTGCCTTGCTCTTTT 57.301 34.783 0.00 0.00 0.00 2.27
2157 2278 3.559238 AATACGTGCCTTGCTCTTTTG 57.441 42.857 0.00 0.00 0.00 2.44
2186 2307 3.079960 TGTTCTGTTCTCGAGTGTCAC 57.920 47.619 13.13 6.14 0.00 3.67
2208 2329 6.072175 TCACAACATTTATCAGGCTAACCAAC 60.072 38.462 0.00 0.00 39.06 3.77
2209 2330 5.185056 ACAACATTTATCAGGCTAACCAACC 59.815 40.000 0.00 0.00 39.06 3.77
2363 2484 4.201980 TGTGAAGAATATGGTCGAGGTACG 60.202 45.833 0.00 0.00 44.09 3.67
2383 2504 9.120538 AGGTACGTTTGATGCATTTATATCTTT 57.879 29.630 0.00 0.00 0.00 2.52
2402 2523 6.371809 TCTTTCTGTTGTTTAACGCTTGAT 57.628 33.333 0.00 0.00 39.71 2.57
2670 2791 3.891366 CCTGATGTTGACTTGGAAAAGGT 59.109 43.478 0.00 0.00 0.00 3.50
2714 2835 6.739112 ACAATGCTTAAAGGAGAAACTGAAC 58.261 36.000 0.00 0.00 0.00 3.18
2750 2876 7.280205 CGTTTTACTAAGAGGTTCATTATGGCT 59.720 37.037 0.00 0.00 0.00 4.75
2783 2909 5.168569 TGCACAGTACAGATTTGCTACTAC 58.831 41.667 0.00 0.00 34.18 2.73
2886 3015 2.093816 TGCCAATGAACACTTTGTTGCA 60.094 40.909 0.00 0.00 41.28 4.08
2930 3059 6.640907 GCCACACAGGTACATTTTCTTTTAAG 59.359 38.462 0.00 0.00 40.61 1.85
2934 3063 7.867403 ACACAGGTACATTTTCTTTTAAGCATG 59.133 33.333 0.00 0.00 0.00 4.06
2936 3065 9.073475 ACAGGTACATTTTCTTTTAAGCATGTA 57.927 29.630 0.00 0.00 0.00 2.29
2964 3093 7.558161 TCATTTTATGGAGATTGTGCACTAG 57.442 36.000 19.41 0.00 0.00 2.57
3015 3144 4.322725 CCACCAACTACTCTGTCAATGCTA 60.323 45.833 0.00 0.00 0.00 3.49
3022 3151 2.035961 ACTCTGTCAATGCTACACGTGT 59.964 45.455 26.52 26.52 0.00 4.49
3027 3156 4.173256 TGTCAATGCTACACGTGTGATAG 58.827 43.478 30.83 20.71 0.00 2.08
3042 3171 5.599732 GTGTGATAGATTCAGTGAGAGCAT 58.400 41.667 0.00 0.00 34.17 3.79
3057 3186 4.597075 TGAGAGCATAGGGGCAATATTGTA 59.403 41.667 16.61 1.96 35.83 2.41
3100 3230 6.381498 TGGGTGGAACTAAAACATAGATCA 57.619 37.500 0.00 0.00 36.74 2.92
3212 3378 9.900710 GAGTCGTATCTTCACTTGAACATATAT 57.099 33.333 0.00 0.00 0.00 0.86
3254 3420 7.326454 TCAACTTCATATCTCAGGAAAGACAG 58.674 38.462 0.00 0.00 0.00 3.51
3522 3688 5.075858 AGTGAATCTTGCTGAGAGAAGAG 57.924 43.478 0.00 0.00 37.93 2.85
3523 3689 4.081531 AGTGAATCTTGCTGAGAGAAGAGG 60.082 45.833 0.00 0.00 37.93 3.69
3525 3691 3.891422 ATCTTGCTGAGAGAAGAGGTG 57.109 47.619 0.00 0.00 37.93 4.00
3526 3692 1.274728 TCTTGCTGAGAGAAGAGGTGC 59.725 52.381 0.00 0.00 0.00 5.01
3527 3693 1.275856 CTTGCTGAGAGAAGAGGTGCT 59.724 52.381 0.00 0.00 0.00 4.40
3528 3694 0.607112 TGCTGAGAGAAGAGGTGCTG 59.393 55.000 0.00 0.00 0.00 4.41
3529 3695 0.607620 GCTGAGAGAAGAGGTGCTGT 59.392 55.000 0.00 0.00 0.00 4.40
3531 3697 2.416701 GCTGAGAGAAGAGGTGCTGTAC 60.417 54.545 0.00 0.00 0.00 2.90
3533 3699 3.501349 TGAGAGAAGAGGTGCTGTACTT 58.499 45.455 0.00 0.00 0.00 2.24
3535 3701 4.459685 TGAGAGAAGAGGTGCTGTACTTAC 59.540 45.833 0.00 0.00 0.00 2.34
3536 3702 4.408276 AGAGAAGAGGTGCTGTACTTACA 58.592 43.478 0.00 0.00 34.56 2.41
3661 3862 2.152016 GTTACTTCTGGTGCCTCAACC 58.848 52.381 0.00 0.00 40.94 3.77
3709 3910 3.630312 GGTTGAGGTGCTTCTTTTGTACA 59.370 43.478 0.00 0.00 0.00 2.90
3746 3947 6.262049 GGTGTACAATATATTGGTGCACATCA 59.738 38.462 29.07 5.31 41.96 3.07
3761 3962 6.073819 GGTGCACATCAAATAAACTGAAAACC 60.074 38.462 20.43 0.00 0.00 3.27
3776 3977 2.869233 AAACCGCATAACCATGATGC 57.131 45.000 7.60 7.60 45.12 3.91
3797 3998 4.183865 GCTTTCTTCTTTTGCAGGTTGTT 58.816 39.130 0.00 0.00 0.00 2.83
3827 4028 3.003275 CGCTACACAAGGTGTTTGACATT 59.997 43.478 7.37 0.00 45.08 2.71
3875 4076 5.352016 TGCATAGATTTTCAGCAAAATTGGC 59.648 36.000 0.00 0.00 41.47 4.52
3892 4093 6.483888 AATTGGCCAGGGGATAATAATAGT 57.516 37.500 5.11 0.00 0.00 2.12
3920 4121 4.015872 CCTGGCAAAGGTTAGTAGAACA 57.984 45.455 0.00 0.00 41.74 3.18
3925 4126 5.830991 TGGCAAAGGTTAGTAGAACAATTGT 59.169 36.000 4.92 4.92 0.00 2.71
3928 4129 5.607119 AAGGTTAGTAGAACAATTGTGCG 57.393 39.130 12.82 0.00 0.00 5.34
4039 4241 4.859304 ATCACTTGTACCACGAACAGTA 57.141 40.909 0.00 0.00 0.00 2.74
4067 4269 4.202367 ACTTGTATCAGCTGCTATAACCCC 60.202 45.833 9.47 0.00 0.00 4.95
4069 4271 3.324846 TGTATCAGCTGCTATAACCCCTG 59.675 47.826 9.47 0.00 0.00 4.45
4084 4286 0.904649 CCCTGGCCCCTTGAAAAATC 59.095 55.000 0.00 0.00 0.00 2.17
4138 4341 2.094675 CTGGGTTTGTTGCTGGATAGG 58.905 52.381 0.00 0.00 0.00 2.57
4140 4343 0.817654 GGTTTGTTGCTGGATAGGGC 59.182 55.000 0.00 0.00 0.00 5.19
4206 4409 5.535030 CAGGGTTTCCTTTGTATATTAGGGC 59.465 44.000 0.00 0.00 42.67 5.19
4255 4465 7.509141 TGTTCATGTGTCATCTGTTGTAATT 57.491 32.000 0.00 0.00 0.00 1.40
4345 4557 7.468141 TCTTCTTCTTTGCAGAGTACATAGA 57.532 36.000 3.90 0.49 0.00 1.98
4352 4564 6.611642 TCTTTGCAGAGTACATAGATTACCCT 59.388 38.462 3.90 0.00 0.00 4.34
4376 4589 5.221621 TGTCACTTATCCTGTGTTCATGTCA 60.222 40.000 0.00 0.00 36.83 3.58
4383 4596 1.599071 CTGTGTTCATGTCAGCGTTGT 59.401 47.619 0.00 0.00 0.00 3.32
4384 4597 2.013400 TGTGTTCATGTCAGCGTTGTT 58.987 42.857 0.00 0.00 0.00 2.83
4396 4609 5.297278 TGTCAGCGTTGTTATACCAAAACTT 59.703 36.000 0.00 0.00 0.00 2.66
4422 4635 9.582431 TTTATATAGCTTAATGTACGATGAGCC 57.418 33.333 9.83 0.00 0.00 4.70
4427 4640 1.220529 AATGTACGATGAGCCATGCG 58.779 50.000 0.00 0.00 0.00 4.73
4446 4659 3.298126 CTCTACTCACGAGCACACG 57.702 57.895 0.00 0.00 39.31 4.49
4447 4660 0.796927 CTCTACTCACGAGCACACGA 59.203 55.000 5.12 0.00 37.03 4.35
4448 4661 0.796927 TCTACTCACGAGCACACGAG 59.203 55.000 5.12 0.80 37.03 4.18
4449 4662 0.794981 CTACTCACGAGCACACGAGC 60.795 60.000 5.12 0.00 37.03 5.03
4450 4663 1.512156 TACTCACGAGCACACGAGCA 61.512 55.000 5.12 0.00 36.85 4.26
4451 4664 2.354656 TCACGAGCACACGAGCAC 60.355 61.111 5.12 0.00 36.85 4.40
4452 4665 3.406361 CACGAGCACACGAGCACC 61.406 66.667 5.12 0.00 36.85 5.01
4453 4666 3.606662 ACGAGCACACGAGCACCT 61.607 61.111 5.12 0.00 36.85 4.00
4493 4706 9.435688 GTGCAAAAGGAATAAAACCAGAAATAT 57.564 29.630 0.00 0.00 0.00 1.28
4571 4784 8.354426 CCATGGAGCTTGAAATTTGAAAATTTT 58.646 29.630 5.56 2.28 45.70 1.82
4600 4813 7.728847 ATCAAATGTTTAGGTTCCAAAAAGC 57.271 32.000 0.00 0.00 0.00 3.51
4601 4814 6.883744 TCAAATGTTTAGGTTCCAAAAAGCT 58.116 32.000 0.00 0.00 0.00 3.74
4603 4816 6.731292 AATGTTTAGGTTCCAAAAAGCTCT 57.269 33.333 0.00 0.00 0.00 4.09
4604 4817 5.514274 TGTTTAGGTTCCAAAAAGCTCTG 57.486 39.130 0.00 0.00 0.00 3.35
4661 4876 2.591923 TGCCTGTAAAGTTTCATGGCA 58.408 42.857 18.41 18.41 45.31 4.92
4683 4898 6.299604 GCAAAATACATATGCTAGCTACACG 58.700 40.000 17.23 3.33 37.12 4.49
4687 4902 8.833231 AAATACATATGCTAGCTACACGAAAT 57.167 30.769 17.23 0.47 0.00 2.17
4798 5017 1.954437 TACAGACGCTAACGAACACG 58.046 50.000 0.00 0.00 43.93 4.49
4812 5031 7.377928 GCTAACGAACACGTACATATACTCATT 59.622 37.037 0.00 0.00 39.39 2.57
4834 5054 2.682155 TATGAATGCGCACACCACTA 57.318 45.000 14.90 0.00 0.00 2.74
4841 5061 1.226974 CGCACACCACTATCTCCCG 60.227 63.158 0.00 0.00 0.00 5.14
4842 5062 1.898154 GCACACCACTATCTCCCGT 59.102 57.895 0.00 0.00 0.00 5.28
4847 5067 3.930848 CACACCACTATCTCCCGTTAAAC 59.069 47.826 0.00 0.00 0.00 2.01
4856 5076 8.823818 CACTATCTCCCGTTAAACGAATATTTT 58.176 33.333 0.00 0.00 46.05 1.82
4857 5077 8.823818 ACTATCTCCCGTTAAACGAATATTTTG 58.176 33.333 0.00 0.00 46.05 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.800031 CCACAAAAGCAAAAGAATGAAATTTTG 58.200 29.630 6.13 6.13 45.10 2.44
10 11 5.163774 GCACCACAAAAGCAAAAGAATGAAA 60.164 36.000 0.00 0.00 0.00 2.69
18 19 2.495270 TCTGAGCACCACAAAAGCAAAA 59.505 40.909 0.00 0.00 0.00 2.44
21 22 1.311859 CTCTGAGCACCACAAAAGCA 58.688 50.000 0.00 0.00 0.00 3.91
22 23 0.595095 CCTCTGAGCACCACAAAAGC 59.405 55.000 0.00 0.00 0.00 3.51
23 24 0.595095 GCCTCTGAGCACCACAAAAG 59.405 55.000 0.00 0.00 0.00 2.27
52 56 2.524306 TGGGTACTTTGCCCTTCATTG 58.476 47.619 0.72 0.00 46.22 2.82
54 58 2.110011 AGTTGGGTACTTTGCCCTTCAT 59.890 45.455 0.72 0.00 46.22 2.57
60 64 3.694566 CCTTATCAGTTGGGTACTTTGCC 59.305 47.826 0.00 0.00 33.85 4.52
62 66 3.694566 GCCCTTATCAGTTGGGTACTTTG 59.305 47.826 0.00 0.00 42.77 2.77
66 70 3.136626 AGATGCCCTTATCAGTTGGGTAC 59.863 47.826 0.00 0.00 42.77 3.34
69 73 4.042062 TCATAGATGCCCTTATCAGTTGGG 59.958 45.833 0.00 0.00 43.62 4.12
72 76 6.753913 TTCTCATAGATGCCCTTATCAGTT 57.246 37.500 0.00 0.00 0.00 3.16
76 80 5.879223 CCACATTCTCATAGATGCCCTTATC 59.121 44.000 0.00 0.00 0.00 1.75
78 82 4.907269 TCCACATTCTCATAGATGCCCTTA 59.093 41.667 0.00 0.00 0.00 2.69
83 87 5.212532 AGAGTCCACATTCTCATAGATGC 57.787 43.478 0.00 0.00 33.63 3.91
86 90 6.183360 CGGTAAAGAGTCCACATTCTCATAGA 60.183 42.308 0.00 0.00 33.63 1.98
87 91 5.980116 CGGTAAAGAGTCCACATTCTCATAG 59.020 44.000 0.00 0.00 33.63 2.23
96 100 3.150458 TCTCTCGGTAAAGAGTCCACA 57.850 47.619 1.21 0.00 42.82 4.17
117 121 8.635765 AGCAAGAAAGTTAATCCAAGTCAATA 57.364 30.769 0.00 0.00 0.00 1.90
139 143 8.125978 AGGATTTGTTGATCAATTTTCTAGCA 57.874 30.769 12.12 0.00 35.84 3.49
142 146 9.519191 TGAGAGGATTTGTTGATCAATTTTCTA 57.481 29.630 12.12 0.00 35.84 2.10
144 148 9.136952 CTTGAGAGGATTTGTTGATCAATTTTC 57.863 33.333 12.12 6.74 35.84 2.29
147 151 6.723052 ACCTTGAGAGGATTTGTTGATCAATT 59.277 34.615 12.12 0.00 46.74 2.32
163 167 3.703001 ATGTACCAACCACCTTGAGAG 57.297 47.619 0.00 0.00 30.42 3.20
191 199 7.695055 TGATTCAAACCCTACTAAAATCCTCA 58.305 34.615 0.00 0.00 0.00 3.86
242 250 8.133627 CCCTGTGATGCTCTTTGAATTATTAAG 58.866 37.037 0.00 0.00 0.00 1.85
250 258 3.507162 TTCCCTGTGATGCTCTTTGAA 57.493 42.857 0.00 0.00 0.00 2.69
261 269 9.921637 GTGATTTTTAATAACATTTCCCTGTGA 57.078 29.630 0.00 0.00 0.00 3.58
264 272 8.859156 CACGTGATTTTTAATAACATTTCCCTG 58.141 33.333 10.90 0.00 0.00 4.45
267 275 9.620660 AGACACGTGATTTTTAATAACATTTCC 57.379 29.630 25.01 0.00 0.00 3.13
277 285 6.841443 TTTACCGAGACACGTGATTTTTAA 57.159 33.333 25.01 9.08 40.78 1.52
279 287 5.295045 ACTTTTACCGAGACACGTGATTTTT 59.705 36.000 25.01 0.00 40.78 1.94
287 295 4.100707 TGGATACTTTTACCGAGACACG 57.899 45.455 0.00 0.00 38.73 4.49
307 315 6.790285 ATAATTTTGCAACCAAGCTCTTTG 57.210 33.333 0.00 0.00 36.50 2.77
311 319 5.466393 ACACAATAATTTTGCAACCAAGCTC 59.534 36.000 0.00 0.00 34.99 4.09
317 325 7.475771 TTCAGAACACAATAATTTTGCAACC 57.524 32.000 0.00 0.00 0.00 3.77
327 335 9.554395 TTGACTACTCATTTCAGAACACAATAA 57.446 29.630 0.00 0.00 0.00 1.40
331 339 7.714813 TCATTTGACTACTCATTTCAGAACACA 59.285 33.333 0.00 0.00 0.00 3.72
338 346 4.943705 GCCCTCATTTGACTACTCATTTCA 59.056 41.667 0.00 0.00 0.00 2.69
339 347 4.943705 TGCCCTCATTTGACTACTCATTTC 59.056 41.667 0.00 0.00 0.00 2.17
352 360 3.571401 CAGAAGTGAAGTTGCCCTCATTT 59.429 43.478 0.00 0.00 0.00 2.32
353 361 3.152341 CAGAAGTGAAGTTGCCCTCATT 58.848 45.455 0.00 0.00 0.00 2.57
354 362 2.107204 ACAGAAGTGAAGTTGCCCTCAT 59.893 45.455 0.00 0.00 0.00 2.90
356 364 2.262423 ACAGAAGTGAAGTTGCCCTC 57.738 50.000 0.00 0.00 0.00 4.30
357 365 2.736670 AACAGAAGTGAAGTTGCCCT 57.263 45.000 0.00 0.00 0.00 5.19
361 416 5.182001 CCAATCCCTAACAGAAGTGAAGTTG 59.818 44.000 0.00 0.00 0.00 3.16
374 429 0.808755 CCGTGCAACCAATCCCTAAC 59.191 55.000 0.00 0.00 0.00 2.34
379 434 1.153784 CATGCCGTGCAACCAATCC 60.154 57.895 2.68 0.00 43.62 3.01
380 435 1.153784 CCATGCCGTGCAACCAATC 60.154 57.895 2.68 0.00 43.62 2.67
381 436 2.972267 CCATGCCGTGCAACCAAT 59.028 55.556 2.68 0.00 43.62 3.16
382 437 3.988525 GCCATGCCGTGCAACCAA 61.989 61.111 2.68 0.00 43.62 3.67
393 448 3.056607 GGTACCAATGATATTGGCCATGC 60.057 47.826 17.99 0.00 43.23 4.06
394 449 4.151121 TGGTACCAATGATATTGGCCATG 58.849 43.478 13.60 0.00 43.23 3.66
395 450 4.467861 TGGTACCAATGATATTGGCCAT 57.532 40.909 13.60 0.00 43.23 4.40
396 451 3.961484 TGGTACCAATGATATTGGCCA 57.039 42.857 13.60 15.19 43.23 5.36
411 466 0.519961 GTTGTCGGTGCCATTGGTAC 59.480 55.000 14.91 14.91 37.58 3.34
412 467 0.398696 AGTTGTCGGTGCCATTGGTA 59.601 50.000 4.26 0.00 0.00 3.25
413 468 0.398696 TAGTTGTCGGTGCCATTGGT 59.601 50.000 4.26 0.00 0.00 3.67
414 469 1.086696 CTAGTTGTCGGTGCCATTGG 58.913 55.000 0.00 0.00 0.00 3.16
415 470 2.002586 CTCTAGTTGTCGGTGCCATTG 58.997 52.381 0.00 0.00 0.00 2.82
416 471 1.066143 CCTCTAGTTGTCGGTGCCATT 60.066 52.381 0.00 0.00 0.00 3.16
423 478 1.043673 CCCCTCCCTCTAGTTGTCGG 61.044 65.000 0.00 0.00 0.00 4.79
425 480 2.436173 CAATCCCCTCCCTCTAGTTGTC 59.564 54.545 0.00 0.00 0.00 3.18
426 481 2.482494 CAATCCCCTCCCTCTAGTTGT 58.518 52.381 0.00 0.00 0.00 3.32
431 486 1.734655 GATGCAATCCCCTCCCTCTA 58.265 55.000 0.00 0.00 37.38 2.43
432 487 1.414061 CGATGCAATCCCCTCCCTCT 61.414 60.000 0.00 0.00 41.39 3.69
437 492 1.169034 GGAAGCGATGCAATCCCCTC 61.169 60.000 0.00 0.00 41.39 4.30
455 510 3.803082 CCACGACGCAAGCATGGG 61.803 66.667 4.27 4.27 44.57 4.00
456 511 3.803082 CCCACGACGCAAGCATGG 61.803 66.667 0.00 0.00 45.62 3.66
464 519 2.999739 TTCCAAACCTCCCACGACGC 63.000 60.000 0.00 0.00 0.00 5.19
466 521 0.108019 AGTTCCAAACCTCCCACGAC 59.892 55.000 0.00 0.00 0.00 4.34
469 524 1.143073 ACTCAGTTCCAAACCTCCCAC 59.857 52.381 0.00 0.00 0.00 4.61
484 539 4.732285 AAAACACTCGCATTACACTCAG 57.268 40.909 0.00 0.00 0.00 3.35
485 540 4.688879 CCTAAAACACTCGCATTACACTCA 59.311 41.667 0.00 0.00 0.00 3.41
486 541 4.927425 TCCTAAAACACTCGCATTACACTC 59.073 41.667 0.00 0.00 0.00 3.51
487 542 4.890088 TCCTAAAACACTCGCATTACACT 58.110 39.130 0.00 0.00 0.00 3.55
488 543 5.600908 TTCCTAAAACACTCGCATTACAC 57.399 39.130 0.00 0.00 0.00 2.90
489 544 6.621316 TTTTCCTAAAACACTCGCATTACA 57.379 33.333 0.00 0.00 0.00 2.41
517 572 2.350522 CTGCTAACACCTGACATGGAC 58.649 52.381 0.00 0.00 0.00 4.02
526 581 4.367039 AATGTTACACCTGCTAACACCT 57.633 40.909 0.00 0.00 37.02 4.00
532 587 6.028146 TCGTCTTTAATGTTACACCTGCTA 57.972 37.500 0.00 0.00 0.00 3.49
534 589 4.092968 CCTCGTCTTTAATGTTACACCTGC 59.907 45.833 0.00 0.00 0.00 4.85
535 590 4.092968 GCCTCGTCTTTAATGTTACACCTG 59.907 45.833 0.00 0.00 0.00 4.00
564 621 0.949105 GCATCCGCTATAACCCACGG 60.949 60.000 0.00 0.00 46.97 4.94
565 622 0.249699 TGCATCCGCTATAACCCACG 60.250 55.000 0.00 0.00 39.64 4.94
580 637 5.126707 GGGATCAAACTCAAATCTCTTGCAT 59.873 40.000 0.00 0.00 0.00 3.96
584 641 3.691609 GCGGGATCAAACTCAAATCTCTT 59.308 43.478 0.00 0.00 0.00 2.85
586 643 2.356069 GGCGGGATCAAACTCAAATCTC 59.644 50.000 0.00 0.00 0.00 2.75
588 645 1.064060 CGGCGGGATCAAACTCAAATC 59.936 52.381 0.00 0.00 0.00 2.17
598 655 3.390521 ACTCTTGCGGCGGGATCA 61.391 61.111 9.78 0.00 0.00 2.92
599 656 2.892425 CACTCTTGCGGCGGGATC 60.892 66.667 9.78 0.00 0.00 3.36
600 657 3.706373 ACACTCTTGCGGCGGGAT 61.706 61.111 9.78 0.00 0.00 3.85
601 658 4.680237 CACACTCTTGCGGCGGGA 62.680 66.667 9.78 0.00 0.00 5.14
602 659 4.988598 ACACACTCTTGCGGCGGG 62.989 66.667 9.78 0.00 0.00 6.13
603 660 3.414700 GACACACTCTTGCGGCGG 61.415 66.667 9.78 0.00 0.00 6.13
604 661 1.498865 AAAGACACACTCTTGCGGCG 61.499 55.000 0.51 0.51 39.36 6.46
605 662 0.663153 AAAAGACACACTCTTGCGGC 59.337 50.000 0.00 0.00 39.36 6.53
607 664 1.002468 CCCAAAAGACACACTCTTGCG 60.002 52.381 0.00 0.00 39.36 4.85
608 665 2.291741 CTCCCAAAAGACACACTCTTGC 59.708 50.000 0.00 0.00 39.36 4.01
609 666 3.545703 ACTCCCAAAAGACACACTCTTG 58.454 45.455 0.00 0.00 39.36 3.02
610 667 3.741388 CGACTCCCAAAAGACACACTCTT 60.741 47.826 0.00 0.00 41.39 2.85
611 668 2.224066 CGACTCCCAAAAGACACACTCT 60.224 50.000 0.00 0.00 0.00 3.24
612 669 2.135933 CGACTCCCAAAAGACACACTC 58.864 52.381 0.00 0.00 0.00 3.51
613 670 1.202651 CCGACTCCCAAAAGACACACT 60.203 52.381 0.00 0.00 0.00 3.55
614 671 1.226746 CCGACTCCCAAAAGACACAC 58.773 55.000 0.00 0.00 0.00 3.82
615 672 0.834612 ACCGACTCCCAAAAGACACA 59.165 50.000 0.00 0.00 0.00 3.72
616 673 1.509703 GACCGACTCCCAAAAGACAC 58.490 55.000 0.00 0.00 0.00 3.67
617 674 0.032952 CGACCGACTCCCAAAAGACA 59.967 55.000 0.00 0.00 0.00 3.41
619 676 1.005394 GCGACCGACTCCCAAAAGA 60.005 57.895 0.00 0.00 0.00 2.52
623 680 2.920912 AAGGCGACCGACTCCCAA 60.921 61.111 0.00 0.00 29.93 4.12
625 682 1.880819 TTACAAGGCGACCGACTCCC 61.881 60.000 0.00 0.00 29.93 4.30
633 690 7.544915 GGAGGTTCTATATAATTACAAGGCGAC 59.455 40.741 0.00 0.00 0.00 5.19
636 693 9.438228 GAAGGAGGTTCTATATAATTACAAGGC 57.562 37.037 0.00 0.00 31.73 4.35
649 708 7.346698 TCATCTCATCAAAGAAGGAGGTTCTAT 59.653 37.037 0.00 0.00 45.44 1.98
652 711 5.738909 TCATCTCATCAAAGAAGGAGGTTC 58.261 41.667 0.00 0.00 35.08 3.62
658 717 7.627298 ATTTGTCTCATCTCATCAAAGAAGG 57.373 36.000 0.00 0.00 32.82 3.46
690 749 2.007608 GGGATCTTTTTCGAACCGGAG 58.992 52.381 9.46 0.00 0.00 4.63
693 752 3.858247 AGTAGGGATCTTTTTCGAACCG 58.142 45.455 0.00 0.00 0.00 4.44
694 753 4.190001 GGAGTAGGGATCTTTTTCGAACC 58.810 47.826 0.00 0.00 0.00 3.62
696 755 5.492855 TTGGAGTAGGGATCTTTTTCGAA 57.507 39.130 0.00 0.00 0.00 3.71
697 756 5.045869 ACATTGGAGTAGGGATCTTTTTCGA 60.046 40.000 0.00 0.00 0.00 3.71
698 757 5.186198 ACATTGGAGTAGGGATCTTTTTCG 58.814 41.667 0.00 0.00 0.00 3.46
705 764 6.360618 AGAAAATGACATTGGAGTAGGGATC 58.639 40.000 0.34 0.00 0.00 3.36
707 766 5.779241 AGAAAATGACATTGGAGTAGGGA 57.221 39.130 0.34 0.00 0.00 4.20
708 767 6.660949 AGAAAGAAAATGACATTGGAGTAGGG 59.339 38.462 0.34 0.00 0.00 3.53
709 768 7.693969 AGAAAGAAAATGACATTGGAGTAGG 57.306 36.000 0.34 0.00 0.00 3.18
710 769 8.786898 TCAAGAAAGAAAATGACATTGGAGTAG 58.213 33.333 0.34 0.00 0.00 2.57
717 780 7.785033 AGGTGTTCAAGAAAGAAAATGACATT 58.215 30.769 0.00 0.00 0.00 2.71
720 783 8.406297 ACTAAGGTGTTCAAGAAAGAAAATGAC 58.594 33.333 0.00 0.00 0.00 3.06
723 786 8.519799 TGACTAAGGTGTTCAAGAAAGAAAAT 57.480 30.769 0.00 0.00 0.00 1.82
740 803 5.165961 TGGGAGAGAAAACATGACTAAGG 57.834 43.478 0.00 0.00 0.00 2.69
758 848 3.033659 TGCTTGGTTTTTACCTTGGGA 57.966 42.857 0.00 0.00 0.00 4.37
783 873 4.406456 TGTGAGTGGCATAAATGAAACCT 58.594 39.130 0.00 0.00 0.00 3.50
797 887 3.551846 ACACCCTTTACTTTGTGAGTGG 58.448 45.455 0.00 0.00 39.48 4.00
798 888 5.576447 AAACACCCTTTACTTTGTGAGTG 57.424 39.130 0.00 0.00 39.48 3.51
811 901 5.104318 TGGCAAATTTAGGAAAAACACCCTT 60.104 36.000 0.00 0.00 34.11 3.95
820 910 4.219115 TGTCCTGTGGCAAATTTAGGAAA 58.781 39.130 7.99 1.16 39.11 3.13
822 912 3.517296 TGTCCTGTGGCAAATTTAGGA 57.483 42.857 3.00 3.00 35.29 2.94
825 915 5.344743 TGTTTTGTCCTGTGGCAAATTTA 57.655 34.783 0.00 0.00 34.99 1.40
829 919 2.762887 TCATGTTTTGTCCTGTGGCAAA 59.237 40.909 0.00 0.00 33.40 3.68
832 922 1.270550 CCTCATGTTTTGTCCTGTGGC 59.729 52.381 0.00 0.00 0.00 5.01
1283 1381 3.971305 ACTGCTCTAGTCTCTAGAGGCTA 59.029 47.826 28.03 28.03 42.43 3.93
1284 1382 2.777692 ACTGCTCTAGTCTCTAGAGGCT 59.222 50.000 28.82 28.82 46.53 4.58
1285 1383 3.208747 ACTGCTCTAGTCTCTAGAGGC 57.791 52.381 25.36 16.88 40.92 4.70
1286 1384 4.315803 GCTACTGCTCTAGTCTCTAGAGG 58.684 52.174 25.36 16.54 40.92 3.69
1316 1418 2.666508 ACGTTTCTGAATGAATCGGACG 59.333 45.455 11.68 5.70 46.33 4.79
1320 1422 4.928661 AGGAACGTTTCTGAATGAATCG 57.071 40.909 8.71 7.14 47.00 3.34
1328 1430 3.991773 CCGTCAATTAGGAACGTTTCTGA 59.008 43.478 19.72 11.76 0.00 3.27
1333 1435 1.624813 TCCCCGTCAATTAGGAACGTT 59.375 47.619 0.00 0.00 0.00 3.99
1569 1685 3.546020 CGATTGTCAAGCAACACGAACTT 60.546 43.478 1.19 0.00 40.28 2.66
1571 1687 2.298300 CGATTGTCAAGCAACACGAAC 58.702 47.619 1.19 0.00 40.28 3.95
1573 1689 0.234625 GCGATTGTCAAGCAACACGA 59.765 50.000 1.19 0.00 40.28 4.35
1600 1716 0.250597 AACACTTAACCCCACGAGCC 60.251 55.000 0.00 0.00 0.00 4.70
1610 1726 5.048713 CCATCCAGGAACAGAAACACTTAAC 60.049 44.000 0.00 0.00 41.22 2.01
1611 1727 5.070001 CCATCCAGGAACAGAAACACTTAA 58.930 41.667 0.00 0.00 41.22 1.85
1627 1747 6.830873 AGATTCTTCTGAAAAACCATCCAG 57.169 37.500 0.00 0.00 35.63 3.86
1641 1761 8.226819 TCATACACGTAAGATCAGATTCTTCT 57.773 34.615 0.00 0.00 43.62 2.85
1701 1822 9.450807 GTATGAACACCTTTATCATTAACATGC 57.549 33.333 0.00 0.00 35.53 4.06
1742 1863 1.537202 GCTACAGCACAAAGGAACCTG 59.463 52.381 0.00 0.00 41.59 4.00
1779 1900 7.364200 TGAATACCGAAACCACAAACTAATTG 58.636 34.615 0.00 0.00 44.95 2.32
1781 1902 7.175990 ACATGAATACCGAAACCACAAACTAAT 59.824 33.333 0.00 0.00 0.00 1.73
1785 1906 5.116069 ACATGAATACCGAAACCACAAAC 57.884 39.130 0.00 0.00 0.00 2.93
1786 1907 5.998981 ACTACATGAATACCGAAACCACAAA 59.001 36.000 0.00 0.00 0.00 2.83
1788 1909 4.932799 CACTACATGAATACCGAAACCACA 59.067 41.667 0.00 0.00 0.00 4.17
1789 1910 4.933400 ACACTACATGAATACCGAAACCAC 59.067 41.667 0.00 0.00 0.00 4.16
1790 1911 5.155278 ACACTACATGAATACCGAAACCA 57.845 39.130 0.00 0.00 0.00 3.67
1791 1912 5.172934 TGACACTACATGAATACCGAAACC 58.827 41.667 0.00 0.00 0.00 3.27
1792 1913 5.867716 ACTGACACTACATGAATACCGAAAC 59.132 40.000 0.00 0.00 0.00 2.78
1793 1914 6.032956 ACTGACACTACATGAATACCGAAA 57.967 37.500 0.00 0.00 0.00 3.46
1794 1915 5.654603 ACTGACACTACATGAATACCGAA 57.345 39.130 0.00 0.00 0.00 4.30
1795 1916 6.117488 TCTACTGACACTACATGAATACCGA 58.883 40.000 0.00 0.00 0.00 4.69
1796 1917 6.373186 TCTACTGACACTACATGAATACCG 57.627 41.667 0.00 0.00 0.00 4.02
1797 1918 6.183360 TGCTCTACTGACACTACATGAATACC 60.183 42.308 0.00 0.00 0.00 2.73
1798 1919 6.796426 TGCTCTACTGACACTACATGAATAC 58.204 40.000 0.00 0.00 0.00 1.89
1799 1920 7.339466 TCTTGCTCTACTGACACTACATGAATA 59.661 37.037 0.00 0.00 0.00 1.75
1800 1921 5.921962 TGCTCTACTGACACTACATGAAT 57.078 39.130 0.00 0.00 0.00 2.57
1801 1922 5.476945 TCTTGCTCTACTGACACTACATGAA 59.523 40.000 0.00 0.00 0.00 2.57
1802 1923 5.010282 TCTTGCTCTACTGACACTACATGA 58.990 41.667 0.00 0.00 0.00 3.07
1803 1924 5.124617 TCTCTTGCTCTACTGACACTACATG 59.875 44.000 0.00 0.00 0.00 3.21
1804 1925 5.257262 TCTCTTGCTCTACTGACACTACAT 58.743 41.667 0.00 0.00 0.00 2.29
1805 1926 4.652822 TCTCTTGCTCTACTGACACTACA 58.347 43.478 0.00 0.00 0.00 2.74
1806 1927 5.630661 TTCTCTTGCTCTACTGACACTAC 57.369 43.478 0.00 0.00 0.00 2.73
1815 1936 9.613957 GGTTATTTTTCTTTTCTCTTGCTCTAC 57.386 33.333 0.00 0.00 0.00 2.59
1837 1958 2.498481 ACAGCTAGGCATGTTACGGTTA 59.502 45.455 0.00 0.00 0.00 2.85
1838 1959 1.278127 ACAGCTAGGCATGTTACGGTT 59.722 47.619 0.00 0.00 0.00 4.44
1840 1961 1.290203 CACAGCTAGGCATGTTACGG 58.710 55.000 0.00 0.00 0.00 4.02
1842 1963 3.334691 TGAACACAGCTAGGCATGTTAC 58.665 45.455 10.56 6.95 39.19 2.50
1844 1965 2.566833 TGAACACAGCTAGGCATGTT 57.433 45.000 10.44 10.44 40.84 2.71
1845 1966 2.795231 ATGAACACAGCTAGGCATGT 57.205 45.000 0.00 0.00 32.83 3.21
1846 1967 3.486375 CGAAATGAACACAGCTAGGCATG 60.486 47.826 0.00 0.00 0.00 4.06
1847 1968 2.679837 CGAAATGAACACAGCTAGGCAT 59.320 45.455 0.00 0.00 0.00 4.40
1864 1985 4.929211 CCATTAGACAGACATGACACGAAA 59.071 41.667 0.00 0.00 0.00 3.46
1871 1992 3.369787 CCACAGCCATTAGACAGACATGA 60.370 47.826 0.00 0.00 0.00 3.07
1892 2013 9.710900 AAACAGGAATTTAATTCTGTCAAATCC 57.289 29.630 16.02 0.00 39.24 3.01
1904 2025 7.979444 TCAGACGAAGAAACAGGAATTTAAT 57.021 32.000 0.00 0.00 0.00 1.40
1916 2037 4.514816 TGCATGAACAATCAGACGAAGAAA 59.485 37.500 0.00 0.00 39.39 2.52
1923 2044 5.575606 CCAATTTCTGCATGAACAATCAGAC 59.424 40.000 0.00 0.00 39.39 3.51
1927 2048 5.105635 TCCTCCAATTTCTGCATGAACAATC 60.106 40.000 0.00 0.00 33.88 2.67
1979 2100 6.377327 ACATCAAAATCCTTAATACCAGCG 57.623 37.500 0.00 0.00 0.00 5.18
2015 2136 1.664016 GCAGGCAAGACAACAACATCG 60.664 52.381 0.00 0.00 0.00 3.84
2067 2188 7.199766 ACAATTTGCACGTTCTTCTCATTTAA 58.800 30.769 0.00 0.00 0.00 1.52
2131 2252 5.235305 AGAGCAAGGCACGTATTAAAATG 57.765 39.130 0.00 0.00 0.00 2.32
2142 2263 4.082571 ACATCATACAAAAGAGCAAGGCAC 60.083 41.667 0.00 0.00 0.00 5.01
2143 2264 4.081406 ACATCATACAAAAGAGCAAGGCA 58.919 39.130 0.00 0.00 0.00 4.75
2144 2265 4.708726 ACATCATACAAAAGAGCAAGGC 57.291 40.909 0.00 0.00 0.00 4.35
2156 2277 5.778862 TCGAGAACAGAACAACATCATACA 58.221 37.500 0.00 0.00 0.00 2.29
2157 2278 5.864474 ACTCGAGAACAGAACAACATCATAC 59.136 40.000 21.68 0.00 0.00 2.39
2186 2307 5.650543 GGTTGGTTAGCCTGATAAATGTTG 58.349 41.667 0.00 0.00 35.27 3.33
2208 2329 9.932207 TTCCACACCTATATTATAATTACACGG 57.068 33.333 2.68 1.19 0.00 4.94
2354 2475 2.665649 ATGCATCAAACGTACCTCGA 57.334 45.000 0.00 0.00 42.86 4.04
2383 2504 3.884169 GCATCAAGCGTTAAACAACAGA 58.116 40.909 0.00 0.00 0.00 3.41
2396 2517 2.289002 CGGAGTGGATTTAGCATCAAGC 59.711 50.000 0.00 0.00 46.19 4.01
2445 2566 6.602803 TCACATACATATGTTGCCTGTTTCAT 59.397 34.615 14.77 0.00 43.99 2.57
2670 2791 2.877168 GTTGTTTGATTTGCAATGCCCA 59.123 40.909 1.53 0.00 36.15 5.36
2714 2835 5.856455 CCTCTTAGTAAAACGCACCAATTTG 59.144 40.000 0.00 0.00 0.00 2.32
2750 2876 4.195416 TCTGTACTGTGCAAAATCACACA 58.805 39.130 0.00 0.00 44.19 3.72
2783 2909 7.552458 AAAGCATTTTGGTTAAAACTGGAAG 57.448 32.000 0.00 0.00 37.04 3.46
2886 3015 5.713025 GTGGCATCACAAATAGTGTTGAAT 58.287 37.500 9.71 0.00 46.25 2.57
2930 3059 9.241317 CAATCTCCATAAAATGAAAGTACATGC 57.759 33.333 0.00 0.00 0.00 4.06
2934 3063 8.243426 TGCACAATCTCCATAAAATGAAAGTAC 58.757 33.333 0.00 0.00 0.00 2.73
2936 3065 7.039504 AGTGCACAATCTCCATAAAATGAAAGT 60.040 33.333 21.04 0.00 0.00 2.66
2940 3069 7.337938 TCTAGTGCACAATCTCCATAAAATGA 58.662 34.615 21.04 0.00 0.00 2.57
2964 3093 7.712639 ACAGGTCAATGATAACATGTAGTCATC 59.287 37.037 20.05 12.15 38.50 2.92
3015 3144 4.459337 TCTCACTGAATCTATCACACGTGT 59.541 41.667 17.22 17.22 34.81 4.49
3022 3151 5.479724 CCCTATGCTCTCACTGAATCTATCA 59.520 44.000 0.00 0.00 36.38 2.15
3027 3156 2.549778 GCCCCTATGCTCTCACTGAATC 60.550 54.545 0.00 0.00 0.00 2.52
3042 3171 8.546083 AATGACAAAATACAATATTGCCCCTA 57.454 30.769 15.48 0.82 0.00 3.53
3057 3186 9.065798 CCACCCAAAAGATAAAAATGACAAAAT 57.934 29.630 0.00 0.00 0.00 1.82
3163 3329 6.073314 TCTATGCCCTTACTCCTACGTAAAT 58.927 40.000 0.00 0.00 0.00 1.40
3169 3335 3.502979 CGACTCTATGCCCTTACTCCTAC 59.497 52.174 0.00 0.00 0.00 3.18
3212 3378 7.666623 TGAAGTTGAAGTGTGTCATCAGTATA 58.333 34.615 0.00 0.00 0.00 1.47
3213 3379 6.524734 TGAAGTTGAAGTGTGTCATCAGTAT 58.475 36.000 0.00 0.00 0.00 2.12
3254 3420 3.255888 TCACTAGGTGATACATCGCATCC 59.744 47.826 5.23 0.00 37.67 3.51
3486 3652 7.014615 AGCAAGATTCACTACCAGTTTTCAAAT 59.985 33.333 0.00 0.00 0.00 2.32
3491 3657 5.376625 TCAGCAAGATTCACTACCAGTTTT 58.623 37.500 0.00 0.00 0.00 2.43
3510 3676 0.607620 ACAGCACCTCTTCTCTCAGC 59.392 55.000 0.00 0.00 0.00 4.26
3527 3693 8.038944 GGTTACATTCTTCCATCTGTAAGTACA 58.961 37.037 0.00 0.00 35.42 2.90
3528 3694 8.258708 AGGTTACATTCTTCCATCTGTAAGTAC 58.741 37.037 0.00 0.00 35.42 2.73
3529 3695 8.375493 AGGTTACATTCTTCCATCTGTAAGTA 57.625 34.615 0.00 0.00 35.42 2.24
3531 3697 8.567285 AAAGGTTACATTCTTCCATCTGTAAG 57.433 34.615 0.00 0.00 35.42 2.34
3533 3699 8.934023 AAAAAGGTTACATTCTTCCATCTGTA 57.066 30.769 0.00 0.00 0.00 2.74
3535 3701 9.626045 GTTAAAAAGGTTACATTCTTCCATCTG 57.374 33.333 0.00 0.00 0.00 2.90
3536 3702 9.588096 AGTTAAAAAGGTTACATTCTTCCATCT 57.412 29.630 0.00 0.00 0.00 2.90
3537 3703 9.626045 CAGTTAAAAAGGTTACATTCTTCCATC 57.374 33.333 0.00 0.00 0.00 3.51
3550 3751 9.719355 ACAGTTCAAATTTCAGTTAAAAAGGTT 57.281 25.926 0.00 0.00 0.00 3.50
3620 3821 3.217626 CTCCAATTGTGATAGGCCCTTC 58.782 50.000 0.00 0.00 0.00 3.46
3661 3862 4.334481 GTGAATTACATTACCTTGTCCGGG 59.666 45.833 0.00 0.00 0.00 5.73
3746 3947 6.750148 TGGTTATGCGGTTTTCAGTTTATTT 58.250 32.000 0.00 0.00 0.00 1.40
3776 3977 5.410067 TCAACAACCTGCAAAAGAAGAAAG 58.590 37.500 0.00 0.00 0.00 2.62
3797 3998 2.165641 CACCTTGTGTAGCGTATCCTCA 59.834 50.000 0.00 0.00 0.00 3.86
3827 4028 3.003275 CCTGCAAAACTTCTTGACGCTTA 59.997 43.478 0.00 0.00 0.00 3.09
3875 4076 5.888161 GCCATCAACTATTATTATCCCCTGG 59.112 44.000 0.00 0.00 0.00 4.45
3892 4093 4.116926 CCTTTGCCAGGCCATCAA 57.883 55.556 9.64 2.47 35.13 2.57
3928 4129 4.897025 AGCTACTGTACAACGATAGGTC 57.103 45.455 0.00 0.00 43.77 3.85
4039 4241 5.860941 ATAGCAGCTGATACAAGTGTACT 57.139 39.130 20.43 2.40 32.72 2.73
4067 4269 1.256812 ACGATTTTTCAAGGGGCCAG 58.743 50.000 4.39 0.00 0.00 4.85
4069 4271 2.831685 AAACGATTTTTCAAGGGGCC 57.168 45.000 0.00 0.00 0.00 5.80
4084 4286 6.046593 TCTATGTAACCAGCCTATGAAAACG 58.953 40.000 0.00 0.00 0.00 3.60
4130 4333 2.228059 CTGCATTTGAGCCCTATCCAG 58.772 52.381 0.00 0.00 0.00 3.86
4138 4341 1.034292 GGGAGTCCTGCATTTGAGCC 61.034 60.000 9.58 0.00 0.00 4.70
4193 4396 3.134985 TGGACTTGCGCCCTAATATACAA 59.865 43.478 4.18 0.00 0.00 2.41
4206 4409 2.094675 AGAATGGGAATTGGACTTGCG 58.905 47.619 0.00 0.00 0.00 4.85
4255 4465 9.280174 AGTGAATACGGAGAAAAGTTAAATTCA 57.720 29.630 0.00 0.00 0.00 2.57
4322 4534 8.715191 AATCTATGTACTCTGCAAAGAAGAAG 57.285 34.615 0.00 0.00 0.00 2.85
4324 4536 8.198109 GGTAATCTATGTACTCTGCAAAGAAGA 58.802 37.037 0.00 0.00 0.00 2.87
4328 4540 6.703607 CAGGGTAATCTATGTACTCTGCAAAG 59.296 42.308 0.00 0.00 41.79 2.77
4345 4557 4.783227 ACACAGGATAAGTGACAGGGTAAT 59.217 41.667 0.00 0.00 40.16 1.89
4352 4564 5.221621 TGACATGAACACAGGATAAGTGACA 60.222 40.000 0.00 0.00 40.16 3.58
4396 4609 9.582431 GGCTCATCGTACATTAAGCTATATAAA 57.418 33.333 0.00 0.00 0.00 1.40
4422 4635 2.865357 CTCGTGAGTAGAGCGCATG 58.135 57.895 11.47 0.00 35.60 4.06
4436 4649 3.151958 AAGGTGCTCGTGTGCTCGT 62.152 57.895 0.00 0.00 0.00 4.18
4444 4657 4.454504 CCTACAAATTTACAAGGTGCTCGT 59.545 41.667 0.00 0.00 0.00 4.18
4446 4659 5.959618 ACCTACAAATTTACAAGGTGCTC 57.040 39.130 14.35 0.00 39.10 4.26
4450 4663 6.472686 TTTGCACCTACAAATTTACAAGGT 57.527 33.333 10.87 10.87 41.24 3.50
4451 4664 6.423604 CCTTTTGCACCTACAAATTTACAAGG 59.576 38.462 9.85 9.85 39.18 3.61
4452 4665 7.206687 TCCTTTTGCACCTACAAATTTACAAG 58.793 34.615 0.00 0.00 39.18 3.16
4453 4666 7.113658 TCCTTTTGCACCTACAAATTTACAA 57.886 32.000 0.00 0.00 39.18 2.41
4661 4876 8.657074 TTTCGTGTAGCTAGCATATGTATTTT 57.343 30.769 18.83 0.00 0.00 1.82
4741 4956 2.222445 ACGTTTTGATGCGAGTTGTACC 59.778 45.455 0.00 0.00 0.00 3.34
4812 5031 1.737236 GTGGTGTGCGCATTCATAAGA 59.263 47.619 15.91 0.00 0.00 2.10
4821 5040 1.218047 GGAGATAGTGGTGTGCGCA 59.782 57.895 5.66 5.66 0.00 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.