Multiple sequence alignment - TraesCS4A01G251300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G251300 chr4A 100.000 2558 0 0 1 2558 562457236 562459793 0.000000e+00 4724.0
1 TraesCS4A01G251300 chr4D 91.258 1796 82 33 268 2032 38345932 38344181 0.000000e+00 2377.0
2 TraesCS4A01G251300 chr4D 88.736 364 11 3 2035 2389 38343540 38343198 3.940000e-113 418.0
3 TraesCS4A01G251300 chr4B 93.340 1081 36 12 793 1850 55727320 55726253 0.000000e+00 1565.0
4 TraesCS4A01G251300 chr4B 91.026 390 12 5 384 771 55728183 55727815 2.940000e-139 505.0
5 TraesCS4A01G251300 chr4B 92.571 175 13 0 2206 2380 55725665 55725491 4.220000e-63 252.0
6 TraesCS4A01G251300 chr4B 90.984 122 10 1 266 387 55728334 55728214 2.040000e-36 163.0
7 TraesCS4A01G251300 chr1D 90.336 238 17 6 1 236 293950353 293950120 8.890000e-80 307.0
8 TraesCS4A01G251300 chr1D 85.526 76 8 2 1972 2046 111003519 111003446 2.730000e-10 76.8
9 TraesCS4A01G251300 chr6B 89.744 234 19 5 1 232 75062193 75062423 6.920000e-76 294.0
10 TraesCS4A01G251300 chr6B 97.143 35 1 0 1972 2006 542930749 542930715 2.750000e-05 60.2
11 TraesCS4A01G251300 chr3D 87.391 230 26 3 1 229 580150329 580150556 7.020000e-66 261.0
12 TraesCS4A01G251300 chr3D 81.545 233 36 7 4 232 100413535 100413764 4.350000e-43 185.0
13 TraesCS4A01G251300 chr3D 90.411 73 7 0 2052 2124 288550551 288550479 2.090000e-16 97.1
14 TraesCS4A01G251300 chr5D 85.185 243 27 7 1 240 367979929 367980165 9.150000e-60 241.0
15 TraesCS4A01G251300 chr5D 89.441 161 14 3 87 246 537920274 537920116 1.550000e-47 200.0
16 TraesCS4A01G251300 chr5D 88.889 144 16 0 87 230 537944336 537944193 7.270000e-41 178.0
17 TraesCS4A01G251300 chr5D 88.608 79 9 0 2046 2124 175769021 175769099 2.090000e-16 97.1
18 TraesCS4A01G251300 chr5D 86.567 67 9 0 2058 2124 138470283 138470349 9.820000e-10 75.0
19 TraesCS4A01G251300 chr2B 91.011 178 13 3 55 231 36838421 36838246 1.180000e-58 237.0
20 TraesCS4A01G251300 chr3A 82.906 234 35 5 1 232 723314458 723314228 3.340000e-49 206.0
21 TraesCS4A01G251300 chr3B 91.781 73 6 0 2052 2124 675649167 675649095 4.500000e-18 102.0
22 TraesCS4A01G251300 chr3B 85.000 60 4 2 1986 2045 429323616 429323562 3.560000e-04 56.5
23 TraesCS4A01G251300 chr2D 91.781 73 4 1 2052 2124 555108687 555108617 1.620000e-17 100.0
24 TraesCS4A01G251300 chr2D 90.566 53 3 1 1972 2024 491802927 491802877 4.570000e-08 69.4
25 TraesCS4A01G251300 chr7D 91.549 71 6 0 2054 2124 509615332 509615402 5.820000e-17 99.0
26 TraesCS4A01G251300 chr5A 90.411 73 7 0 2052 2124 475272557 475272485 2.090000e-16 97.1
27 TraesCS4A01G251300 chr5A 100.000 35 0 0 1972 2006 66842269 66842303 5.910000e-07 65.8
28 TraesCS4A01G251300 chr5A 97.368 38 0 1 1970 2006 184231711 184231674 2.120000e-06 63.9
29 TraesCS4A01G251300 chr2A 90.411 73 7 0 2052 2124 101698364 101698292 2.090000e-16 97.1
30 TraesCS4A01G251300 chr1A 90.411 73 6 1 2052 2124 545536719 545536790 7.530000e-16 95.3
31 TraesCS4A01G251300 chr1B 84.000 75 8 3 1972 2045 437601164 437601093 4.570000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G251300 chr4A 562457236 562459793 2557 False 4724.00 4724 100.00000 1 2558 1 chr4A.!!$F1 2557
1 TraesCS4A01G251300 chr4D 38343198 38345932 2734 True 1397.50 2377 89.99700 268 2389 2 chr4D.!!$R1 2121
2 TraesCS4A01G251300 chr4B 55725491 55728334 2843 True 621.25 1565 91.98025 266 2380 4 chr4B.!!$R1 2114

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 152 0.035439 CTGGGACGCCATACTTGGTT 60.035 55.0 0.0 0.0 45.57 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1756 2303 1.003545 CACACAATATGCTAGGCACGC 60.004 52.381 0.0 0.0 43.04 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.151906 GGGGCGATATGGCTCAGT 58.848 61.111 12.01 0.00 44.83 3.41
20 21 1.004440 GGGGCGATATGGCTCAGTC 60.004 63.158 12.01 0.00 44.83 3.51
21 22 1.748403 GGGCGATATGGCTCAGTCA 59.252 57.895 9.71 0.00 44.11 3.41
22 23 0.322975 GGGCGATATGGCTCAGTCAT 59.677 55.000 9.71 0.00 44.11 3.06
23 24 1.674221 GGGCGATATGGCTCAGTCATC 60.674 57.143 9.71 0.00 44.11 2.92
24 25 1.001293 GGCGATATGGCTCAGTCATCA 59.999 52.381 9.71 0.00 40.72 3.07
25 26 2.064762 GCGATATGGCTCAGTCATCAC 58.935 52.381 0.00 0.00 0.00 3.06
26 27 2.546584 GCGATATGGCTCAGTCATCACA 60.547 50.000 0.00 0.00 0.00 3.58
27 28 3.315418 CGATATGGCTCAGTCATCACAG 58.685 50.000 0.00 0.00 0.00 3.66
28 29 3.005155 CGATATGGCTCAGTCATCACAGA 59.995 47.826 0.00 0.00 0.00 3.41
29 30 4.500375 CGATATGGCTCAGTCATCACAGAA 60.500 45.833 0.00 0.00 0.00 3.02
30 31 3.708403 ATGGCTCAGTCATCACAGAAA 57.292 42.857 0.00 0.00 0.00 2.52
31 32 3.708403 TGGCTCAGTCATCACAGAAAT 57.292 42.857 0.00 0.00 0.00 2.17
32 33 4.025040 TGGCTCAGTCATCACAGAAATT 57.975 40.909 0.00 0.00 0.00 1.82
33 34 5.164620 TGGCTCAGTCATCACAGAAATTA 57.835 39.130 0.00 0.00 0.00 1.40
34 35 5.181009 TGGCTCAGTCATCACAGAAATTAG 58.819 41.667 0.00 0.00 0.00 1.73
35 36 5.046376 TGGCTCAGTCATCACAGAAATTAGA 60.046 40.000 0.00 0.00 0.00 2.10
36 37 5.293079 GGCTCAGTCATCACAGAAATTAGAC 59.707 44.000 0.00 0.00 0.00 2.59
37 38 6.105333 GCTCAGTCATCACAGAAATTAGACT 58.895 40.000 0.00 0.00 35.44 3.24
38 39 6.593382 GCTCAGTCATCACAGAAATTAGACTT 59.407 38.462 0.00 0.00 33.01 3.01
39 40 7.761704 GCTCAGTCATCACAGAAATTAGACTTA 59.238 37.037 0.00 0.00 33.01 2.24
40 41 9.299963 CTCAGTCATCACAGAAATTAGACTTAG 57.700 37.037 0.00 0.00 33.01 2.18
41 42 9.025041 TCAGTCATCACAGAAATTAGACTTAGA 57.975 33.333 0.00 0.00 33.01 2.10
42 43 9.081997 CAGTCATCACAGAAATTAGACTTAGAC 57.918 37.037 0.00 0.00 33.01 2.59
43 44 9.030452 AGTCATCACAGAAATTAGACTTAGACT 57.970 33.333 0.00 0.00 31.38 3.24
44 45 9.296400 GTCATCACAGAAATTAGACTTAGACTC 57.704 37.037 0.00 0.00 0.00 3.36
45 46 9.249053 TCATCACAGAAATTAGACTTAGACTCT 57.751 33.333 0.00 0.00 0.00 3.24
46 47 9.868277 CATCACAGAAATTAGACTTAGACTCTT 57.132 33.333 0.00 0.00 0.00 2.85
47 48 9.868277 ATCACAGAAATTAGACTTAGACTCTTG 57.132 33.333 0.00 0.00 0.00 3.02
48 49 9.078990 TCACAGAAATTAGACTTAGACTCTTGA 57.921 33.333 0.00 0.00 0.00 3.02
49 50 9.698309 CACAGAAATTAGACTTAGACTCTTGAA 57.302 33.333 0.00 0.00 0.00 2.69
59 60 9.566432 AGACTTAGACTCTTGAATTTTGATTGT 57.434 29.630 0.00 0.00 0.00 2.71
79 80 8.930760 TGATTGTAATTTTATTTTTGAAGGCCG 58.069 29.630 0.00 0.00 0.00 6.13
80 81 9.145865 GATTGTAATTTTATTTTTGAAGGCCGA 57.854 29.630 0.00 0.00 0.00 5.54
81 82 8.527567 TTGTAATTTTATTTTTGAAGGCCGAG 57.472 30.769 0.00 0.00 0.00 4.63
82 83 6.588373 TGTAATTTTATTTTTGAAGGCCGAGC 59.412 34.615 0.00 0.00 0.00 5.03
114 115 5.071955 CGAAGCACATAGTTTAGCTAAGC 57.928 43.478 12.03 12.03 36.07 3.09
115 116 4.566759 CGAAGCACATAGTTTAGCTAAGCA 59.433 41.667 20.66 8.58 36.07 3.91
116 117 5.500931 CGAAGCACATAGTTTAGCTAAGCAC 60.501 44.000 20.66 11.05 36.07 4.40
117 118 5.091261 AGCACATAGTTTAGCTAAGCACT 57.909 39.130 20.66 17.07 35.19 4.40
118 119 5.491982 AGCACATAGTTTAGCTAAGCACTT 58.508 37.500 20.66 4.70 35.19 3.16
119 120 5.940470 AGCACATAGTTTAGCTAAGCACTTT 59.060 36.000 20.66 8.81 35.19 2.66
120 121 6.092807 AGCACATAGTTTAGCTAAGCACTTTC 59.907 38.462 20.66 6.71 35.19 2.62
121 122 6.092807 GCACATAGTTTAGCTAAGCACTTTCT 59.907 38.462 20.66 3.37 32.72 2.52
122 123 7.361286 GCACATAGTTTAGCTAAGCACTTTCTT 60.361 37.037 20.66 2.71 32.72 2.52
123 124 8.507249 CACATAGTTTAGCTAAGCACTTTCTTT 58.493 33.333 20.66 2.05 32.72 2.52
124 125 8.722394 ACATAGTTTAGCTAAGCACTTTCTTTC 58.278 33.333 20.66 0.00 32.72 2.62
125 126 8.940952 CATAGTTTAGCTAAGCACTTTCTTTCT 58.059 33.333 20.66 0.74 32.72 2.52
126 127 7.428282 AGTTTAGCTAAGCACTTTCTTTCTC 57.572 36.000 20.66 0.00 0.00 2.87
127 128 7.220740 AGTTTAGCTAAGCACTTTCTTTCTCT 58.779 34.615 20.66 0.00 0.00 3.10
128 129 7.386573 AGTTTAGCTAAGCACTTTCTTTCTCTC 59.613 37.037 20.66 0.00 0.00 3.20
129 130 4.241681 AGCTAAGCACTTTCTTTCTCTCG 58.758 43.478 0.00 0.00 0.00 4.04
130 131 3.369451 GCTAAGCACTTTCTTTCTCTCGG 59.631 47.826 0.00 0.00 0.00 4.63
131 132 3.477210 AAGCACTTTCTTTCTCTCGGT 57.523 42.857 0.00 0.00 0.00 4.69
132 133 3.033368 AGCACTTTCTTTCTCTCGGTC 57.967 47.619 0.00 0.00 0.00 4.79
133 134 2.630580 AGCACTTTCTTTCTCTCGGTCT 59.369 45.455 0.00 0.00 0.00 3.85
134 135 2.734079 GCACTTTCTTTCTCTCGGTCTG 59.266 50.000 0.00 0.00 0.00 3.51
135 136 3.321497 CACTTTCTTTCTCTCGGTCTGG 58.679 50.000 0.00 0.00 0.00 3.86
136 137 2.300437 ACTTTCTTTCTCTCGGTCTGGG 59.700 50.000 0.00 0.00 0.00 4.45
137 138 2.304221 TTCTTTCTCTCGGTCTGGGA 57.696 50.000 0.00 0.00 0.00 4.37
138 139 1.546961 TCTTTCTCTCGGTCTGGGAC 58.453 55.000 0.00 0.00 0.00 4.46
139 140 0.171455 CTTTCTCTCGGTCTGGGACG 59.829 60.000 0.00 0.00 32.65 4.79
140 141 1.874345 TTTCTCTCGGTCTGGGACGC 61.874 60.000 0.00 0.00 32.65 5.19
141 142 3.827898 CTCTCGGTCTGGGACGCC 61.828 72.222 0.00 0.00 32.65 5.68
142 143 4.671590 TCTCGGTCTGGGACGCCA 62.672 66.667 0.00 0.00 32.65 5.69
143 144 3.461773 CTCGGTCTGGGACGCCAT 61.462 66.667 0.00 0.00 32.65 4.40
144 145 2.043752 TCGGTCTGGGACGCCATA 60.044 61.111 0.00 0.00 32.65 2.74
145 146 2.106332 CGGTCTGGGACGCCATAC 59.894 66.667 0.00 0.00 32.65 2.39
146 147 2.423898 CGGTCTGGGACGCCATACT 61.424 63.158 0.00 0.00 32.65 2.12
147 148 1.905512 GGTCTGGGACGCCATACTT 59.094 57.895 0.00 0.00 32.65 2.24
148 149 0.462047 GGTCTGGGACGCCATACTTG 60.462 60.000 0.00 0.00 32.65 3.16
149 150 0.462047 GTCTGGGACGCCATACTTGG 60.462 60.000 0.00 0.00 46.66 3.61
150 151 0.907704 TCTGGGACGCCATACTTGGT 60.908 55.000 0.00 0.00 45.57 3.67
151 152 0.035439 CTGGGACGCCATACTTGGTT 60.035 55.000 0.00 0.00 45.57 3.67
152 153 0.322098 TGGGACGCCATACTTGGTTG 60.322 55.000 0.00 0.00 45.57 3.77
153 154 0.322187 GGGACGCCATACTTGGTTGT 60.322 55.000 0.00 0.00 45.57 3.32
154 155 1.530323 GGACGCCATACTTGGTTGTT 58.470 50.000 0.00 0.00 45.57 2.83
155 156 2.616001 GGGACGCCATACTTGGTTGTTA 60.616 50.000 0.00 0.00 45.57 2.41
156 157 3.075884 GGACGCCATACTTGGTTGTTAA 58.924 45.455 0.00 0.00 45.57 2.01
157 158 3.126343 GGACGCCATACTTGGTTGTTAAG 59.874 47.826 0.00 0.00 45.57 1.85
158 159 3.746940 ACGCCATACTTGGTTGTTAAGT 58.253 40.909 0.00 0.00 45.57 2.24
159 160 3.749609 ACGCCATACTTGGTTGTTAAGTC 59.250 43.478 0.00 0.00 45.57 3.01
160 161 3.126343 CGCCATACTTGGTTGTTAAGTCC 59.874 47.826 0.00 0.00 45.57 3.85
161 162 3.442625 GCCATACTTGGTTGTTAAGTCCC 59.557 47.826 0.00 0.00 45.57 4.46
162 163 4.014406 CCATACTTGGTTGTTAAGTCCCC 58.986 47.826 0.00 0.00 39.06 4.81
163 164 4.507691 CCATACTTGGTTGTTAAGTCCCCA 60.508 45.833 0.00 0.00 39.06 4.96
164 165 3.895704 ACTTGGTTGTTAAGTCCCCAT 57.104 42.857 0.00 0.00 33.28 4.00
165 166 3.496331 ACTTGGTTGTTAAGTCCCCATG 58.504 45.455 0.00 0.00 33.28 3.66
166 167 3.139397 ACTTGGTTGTTAAGTCCCCATGA 59.861 43.478 0.00 0.00 33.28 3.07
167 168 4.202673 ACTTGGTTGTTAAGTCCCCATGAT 60.203 41.667 0.00 0.00 33.28 2.45
168 169 3.963129 TGGTTGTTAAGTCCCCATGATC 58.037 45.455 0.00 0.00 0.00 2.92
169 170 3.288092 GGTTGTTAAGTCCCCATGATCC 58.712 50.000 0.00 0.00 0.00 3.36
170 171 2.943033 GTTGTTAAGTCCCCATGATCCG 59.057 50.000 0.00 0.00 0.00 4.18
171 172 2.473070 TGTTAAGTCCCCATGATCCGA 58.527 47.619 0.00 0.00 0.00 4.55
172 173 2.841266 TGTTAAGTCCCCATGATCCGAA 59.159 45.455 0.00 0.00 0.00 4.30
173 174 3.458118 TGTTAAGTCCCCATGATCCGAAT 59.542 43.478 0.00 0.00 0.00 3.34
174 175 4.080015 TGTTAAGTCCCCATGATCCGAATT 60.080 41.667 0.00 0.00 0.00 2.17
175 176 2.645838 AGTCCCCATGATCCGAATTG 57.354 50.000 0.00 0.00 0.00 2.32
176 177 1.846439 AGTCCCCATGATCCGAATTGT 59.154 47.619 0.00 0.00 0.00 2.71
177 178 3.045634 AGTCCCCATGATCCGAATTGTA 58.954 45.455 0.00 0.00 0.00 2.41
178 179 3.652869 AGTCCCCATGATCCGAATTGTAT 59.347 43.478 0.00 0.00 0.00 2.29
179 180 4.003648 GTCCCCATGATCCGAATTGTATC 58.996 47.826 0.00 0.00 0.00 2.24
180 181 3.009033 TCCCCATGATCCGAATTGTATCC 59.991 47.826 0.00 0.00 0.00 2.59
181 182 3.347216 CCCATGATCCGAATTGTATCCC 58.653 50.000 0.00 0.00 0.00 3.85
182 183 3.244875 CCCATGATCCGAATTGTATCCCA 60.245 47.826 0.00 0.00 0.00 4.37
183 184 3.753272 CCATGATCCGAATTGTATCCCAC 59.247 47.826 0.00 0.00 0.00 4.61
184 185 4.505566 CCATGATCCGAATTGTATCCCACT 60.506 45.833 0.00 0.00 0.00 4.00
185 186 5.279960 CCATGATCCGAATTGTATCCCACTA 60.280 44.000 0.00 0.00 0.00 2.74
186 187 5.209818 TGATCCGAATTGTATCCCACTAC 57.790 43.478 0.00 0.00 0.00 2.73
187 188 4.651962 TGATCCGAATTGTATCCCACTACA 59.348 41.667 0.00 0.00 0.00 2.74
188 189 5.306937 TGATCCGAATTGTATCCCACTACAT 59.693 40.000 0.00 0.00 31.94 2.29
189 190 4.956085 TCCGAATTGTATCCCACTACATG 58.044 43.478 0.00 0.00 31.94 3.21
190 191 4.407621 TCCGAATTGTATCCCACTACATGT 59.592 41.667 2.69 2.69 31.94 3.21
191 192 4.511454 CCGAATTGTATCCCACTACATGTG 59.489 45.833 9.11 0.93 45.80 3.21
248 249 4.489679 AAAAAGAAGCAGTGATCCGAAC 57.510 40.909 0.00 0.00 0.00 3.95
249 250 3.409026 AAAGAAGCAGTGATCCGAACT 57.591 42.857 0.00 0.00 0.00 3.01
250 251 2.663826 AGAAGCAGTGATCCGAACTC 57.336 50.000 0.00 0.00 0.00 3.01
251 252 1.205893 AGAAGCAGTGATCCGAACTCC 59.794 52.381 0.00 0.00 0.00 3.85
252 253 0.250513 AAGCAGTGATCCGAACTCCC 59.749 55.000 0.00 0.00 0.00 4.30
253 254 1.153349 GCAGTGATCCGAACTCCCC 60.153 63.158 0.00 0.00 0.00 4.81
254 255 1.522569 CAGTGATCCGAACTCCCCC 59.477 63.158 0.00 0.00 0.00 5.40
255 256 0.978146 CAGTGATCCGAACTCCCCCT 60.978 60.000 0.00 0.00 0.00 4.79
256 257 0.635009 AGTGATCCGAACTCCCCCTA 59.365 55.000 0.00 0.00 0.00 3.53
257 258 0.751452 GTGATCCGAACTCCCCCTAC 59.249 60.000 0.00 0.00 0.00 3.18
258 259 0.337082 TGATCCGAACTCCCCCTACA 59.663 55.000 0.00 0.00 0.00 2.74
259 260 1.273381 TGATCCGAACTCCCCCTACAA 60.273 52.381 0.00 0.00 0.00 2.41
260 261 1.835531 GATCCGAACTCCCCCTACAAA 59.164 52.381 0.00 0.00 0.00 2.83
261 262 1.732117 TCCGAACTCCCCCTACAAAA 58.268 50.000 0.00 0.00 0.00 2.44
262 263 2.056359 TCCGAACTCCCCCTACAAAAA 58.944 47.619 0.00 0.00 0.00 1.94
284 285 7.801716 AAAACAAAAGCACTGATCTGTACTA 57.198 32.000 4.78 0.00 0.00 1.82
285 286 7.801716 AAACAAAAGCACTGATCTGTACTAA 57.198 32.000 4.78 0.00 0.00 2.24
301 302 1.202582 ACTAAGTAGACAGCAGCACGG 59.797 52.381 0.00 0.00 0.00 4.94
327 328 5.485662 AGCAAGTTGCCTAATCGAATAAC 57.514 39.130 24.02 0.00 46.52 1.89
344 345 7.047891 TCGAATAACCTCACTATTTTCTGCAT 58.952 34.615 0.00 0.00 0.00 3.96
681 724 2.506472 GGATCTCGCCAGGTTCCC 59.494 66.667 0.00 0.00 0.00 3.97
702 745 3.003173 TCCTCCCTCCACTTGCGG 61.003 66.667 0.00 0.00 0.00 5.69
790 1313 1.002134 AGCCCCCAACATCAACGAG 60.002 57.895 0.00 0.00 0.00 4.18
791 1314 1.303317 GCCCCCAACATCAACGAGT 60.303 57.895 0.00 0.00 0.00 4.18
812 1335 1.600511 TACAAGTGAGCCATCGCCGA 61.601 55.000 0.00 0.00 36.56 5.54
813 1336 2.125512 AAGTGAGCCATCGCCGAC 60.126 61.111 0.00 0.00 36.56 4.79
897 1420 3.834610 TCTTAACTCGCTAGCTGACAAC 58.165 45.455 13.93 0.00 0.00 3.32
927 1450 0.319040 CACACTCCACTGTCCACTCG 60.319 60.000 0.00 0.00 0.00 4.18
939 1462 4.767841 CACTCGCTCGCTCACGCT 62.768 66.667 0.00 0.00 39.84 5.07
1399 1931 0.534203 CTACACCCACGCCAACAACT 60.534 55.000 0.00 0.00 0.00 3.16
1635 2182 3.032609 CGCCGGAGCATGATCGTC 61.033 66.667 5.05 0.00 39.83 4.20
1658 2205 7.253783 CGTCGTTAGAGTTACAAGTACGATCTA 60.254 40.741 0.00 0.00 38.56 1.98
1659 2206 7.843686 GTCGTTAGAGTTACAAGTACGATCTAC 59.156 40.741 0.00 0.00 38.56 2.59
1660 2207 7.010552 TCGTTAGAGTTACAAGTACGATCTACC 59.989 40.741 0.00 0.00 32.39 3.18
1751 2298 8.600449 ACTGCTTAGATATAAGAAACTCATGC 57.400 34.615 11.29 0.00 0.00 4.06
1756 2303 5.300752 AGATATAAGAAACTCATGCGGTGG 58.699 41.667 0.00 0.00 0.00 4.61
1807 2354 0.109272 TGTCATGTTCTCGGCGAGTC 60.109 55.000 33.31 26.14 0.00 3.36
1838 2385 3.259902 GAGGGTGAACTTGTTATCGGAC 58.740 50.000 0.00 0.00 0.00 4.79
1888 2686 1.524621 GGCATCTACGCATGGCAGT 60.525 57.895 10.27 0.00 46.26 4.40
1889 2687 1.502163 GGCATCTACGCATGGCAGTC 61.502 60.000 10.27 0.00 46.26 3.51
1890 2688 0.811219 GCATCTACGCATGGCAGTCA 60.811 55.000 0.00 0.00 0.00 3.41
1891 2689 0.933097 CATCTACGCATGGCAGTCAC 59.067 55.000 0.00 0.00 0.00 3.67
1892 2690 0.179073 ATCTACGCATGGCAGTCACC 60.179 55.000 0.00 0.00 0.00 4.02
1893 2691 1.079197 CTACGCATGGCAGTCACCA 60.079 57.895 0.00 0.00 45.82 4.17
1894 2692 1.079197 TACGCATGGCAGTCACCAG 60.079 57.895 0.00 0.00 44.71 4.00
1895 2693 1.540435 TACGCATGGCAGTCACCAGA 61.540 55.000 0.00 0.00 44.71 3.86
1896 2694 2.393768 CGCATGGCAGTCACCAGAC 61.394 63.158 0.00 0.00 44.71 3.51
2273 3735 6.547141 TGGTCTTGTTCTGAAAGATTTGTGAT 59.453 34.615 0.00 0.00 46.36 3.06
2322 3784 7.965655 CACGTCAGTCCTCACATAGATAATATC 59.034 40.741 0.00 0.00 0.00 1.63
2405 3867 9.485206 AATTTCTAATGGCAAATGATTAGCATC 57.515 29.630 0.00 0.00 35.78 3.91
2406 3868 7.585579 TTCTAATGGCAAATGATTAGCATCA 57.414 32.000 0.00 0.00 43.85 3.07
2407 3869 7.210718 TCTAATGGCAAATGATTAGCATCAG 57.789 36.000 0.00 0.00 42.93 2.90
2408 3870 3.720949 TGGCAAATGATTAGCATCAGC 57.279 42.857 0.00 0.00 42.93 4.26
2409 3871 3.022607 GGCAAATGATTAGCATCAGCC 57.977 47.619 9.63 9.63 42.93 4.85
2410 3872 2.606308 GGCAAATGATTAGCATCAGCCG 60.606 50.000 9.63 0.00 42.93 5.52
2411 3873 2.606308 GCAAATGATTAGCATCAGCCGG 60.606 50.000 0.00 0.00 42.93 6.13
2412 3874 1.242076 AATGATTAGCATCAGCCGGC 58.758 50.000 21.89 21.89 42.93 6.13
2413 3875 0.607489 ATGATTAGCATCAGCCGGCC 60.607 55.000 26.15 7.28 42.93 6.13
2414 3876 2.281070 ATTAGCATCAGCCGGCCG 60.281 61.111 26.15 21.04 43.56 6.13
2415 3877 2.715532 GATTAGCATCAGCCGGCCGA 62.716 60.000 30.73 21.05 43.56 5.54
2416 3878 2.116983 ATTAGCATCAGCCGGCCGAT 62.117 55.000 30.73 22.64 43.56 4.18
2417 3879 2.715532 TTAGCATCAGCCGGCCGATC 62.716 60.000 30.73 18.31 43.56 3.69
2418 3880 4.615815 GCATCAGCCGGCCGATCT 62.616 66.667 30.73 20.49 33.58 2.75
2419 3881 2.356793 CATCAGCCGGCCGATCTC 60.357 66.667 30.73 12.69 0.00 2.75
2420 3882 3.620785 ATCAGCCGGCCGATCTCC 61.621 66.667 30.73 9.19 0.00 3.71
2421 3883 4.841617 TCAGCCGGCCGATCTCCT 62.842 66.667 30.73 11.52 0.00 3.69
2422 3884 4.598894 CAGCCGGCCGATCTCCTG 62.599 72.222 30.73 19.28 0.00 3.86
2424 3886 3.224324 GCCGGCCGATCTCCTGTA 61.224 66.667 30.73 0.00 0.00 2.74
2425 3887 3.043419 CCGGCCGATCTCCTGTAG 58.957 66.667 30.73 0.44 0.00 2.74
2426 3888 2.336809 CGGCCGATCTCCTGTAGC 59.663 66.667 24.07 0.00 0.00 3.58
2427 3889 2.336809 GGCCGATCTCCTGTAGCG 59.663 66.667 0.00 0.00 0.00 4.26
2428 3890 2.491022 GGCCGATCTCCTGTAGCGT 61.491 63.158 0.00 0.00 0.00 5.07
2429 3891 1.437986 GCCGATCTCCTGTAGCGTT 59.562 57.895 0.00 0.00 0.00 4.84
2430 3892 0.595310 GCCGATCTCCTGTAGCGTTC 60.595 60.000 0.00 0.00 0.00 3.95
2431 3893 0.030908 CCGATCTCCTGTAGCGTTCC 59.969 60.000 0.00 0.00 0.00 3.62
2432 3894 0.317103 CGATCTCCTGTAGCGTTCCG 60.317 60.000 0.00 0.00 0.00 4.30
2453 3915 4.827087 CTCGTGCAGCCGCCAGAT 62.827 66.667 0.00 0.00 37.32 2.90
2454 3916 4.819761 TCGTGCAGCCGCCAGATC 62.820 66.667 0.00 0.00 37.32 2.75
2456 3918 4.783621 GTGCAGCCGCCAGATCCA 62.784 66.667 0.00 0.00 37.32 3.41
2457 3919 4.032452 TGCAGCCGCCAGATCCAA 62.032 61.111 0.00 0.00 37.32 3.53
2458 3920 3.207669 GCAGCCGCCAGATCCAAG 61.208 66.667 0.00 0.00 0.00 3.61
2459 3921 2.270205 CAGCCGCCAGATCCAAGT 59.730 61.111 0.00 0.00 0.00 3.16
2460 3922 1.377725 CAGCCGCCAGATCCAAGTT 60.378 57.895 0.00 0.00 0.00 2.66
2461 3923 0.962356 CAGCCGCCAGATCCAAGTTT 60.962 55.000 0.00 0.00 0.00 2.66
2462 3924 0.678048 AGCCGCCAGATCCAAGTTTC 60.678 55.000 0.00 0.00 0.00 2.78
2463 3925 0.960364 GCCGCCAGATCCAAGTTTCA 60.960 55.000 0.00 0.00 0.00 2.69
2464 3926 1.755179 CCGCCAGATCCAAGTTTCAT 58.245 50.000 0.00 0.00 0.00 2.57
2465 3927 1.672881 CCGCCAGATCCAAGTTTCATC 59.327 52.381 0.00 0.00 0.00 2.92
2466 3928 1.328680 CGCCAGATCCAAGTTTCATCG 59.671 52.381 0.00 0.00 0.00 3.84
2467 3929 1.672881 GCCAGATCCAAGTTTCATCGG 59.327 52.381 0.00 0.00 0.00 4.18
2468 3930 2.680805 GCCAGATCCAAGTTTCATCGGA 60.681 50.000 0.00 0.00 0.00 4.55
2469 3931 2.939103 CCAGATCCAAGTTTCATCGGAC 59.061 50.000 0.00 0.00 0.00 4.79
2470 3932 2.604914 CAGATCCAAGTTTCATCGGACG 59.395 50.000 0.00 0.00 0.00 4.79
2471 3933 1.933853 GATCCAAGTTTCATCGGACGG 59.066 52.381 0.00 0.00 0.00 4.79
2472 3934 0.036765 TCCAAGTTTCATCGGACGGG 60.037 55.000 0.00 0.00 0.00 5.28
2473 3935 0.321298 CCAAGTTTCATCGGACGGGT 60.321 55.000 0.00 0.00 0.00 5.28
2474 3936 0.796312 CAAGTTTCATCGGACGGGTG 59.204 55.000 0.00 0.00 0.00 4.61
2475 3937 0.953960 AAGTTTCATCGGACGGGTGC 60.954 55.000 0.00 0.00 0.00 5.01
2476 3938 1.669760 GTTTCATCGGACGGGTGCA 60.670 57.895 0.00 0.00 0.00 4.57
2477 3939 1.669760 TTTCATCGGACGGGTGCAC 60.670 57.895 8.80 8.80 0.00 4.57
2478 3940 2.384653 TTTCATCGGACGGGTGCACA 62.385 55.000 20.43 0.00 0.00 4.57
2479 3941 2.358125 CATCGGACGGGTGCACAA 60.358 61.111 20.43 0.00 0.00 3.33
2480 3942 1.745115 CATCGGACGGGTGCACAAT 60.745 57.895 20.43 2.33 0.00 2.71
2481 3943 1.745115 ATCGGACGGGTGCACAATG 60.745 57.895 20.43 9.90 0.00 2.82
2482 3944 2.463589 ATCGGACGGGTGCACAATGT 62.464 55.000 20.43 13.31 0.00 2.71
2483 3945 1.374885 CGGACGGGTGCACAATGTA 60.375 57.895 20.43 0.00 0.00 2.29
2484 3946 1.632046 CGGACGGGTGCACAATGTAC 61.632 60.000 20.43 12.91 31.96 2.90
2485 3947 0.604243 GGACGGGTGCACAATGTACA 60.604 55.000 20.43 0.00 34.53 2.90
2486 3948 1.448985 GACGGGTGCACAATGTACAT 58.551 50.000 20.43 1.41 34.53 2.29
2487 3949 1.396996 GACGGGTGCACAATGTACATC 59.603 52.381 20.43 0.00 34.53 3.06
2488 3950 1.003118 ACGGGTGCACAATGTACATCT 59.997 47.619 20.43 0.00 34.53 2.90
2489 3951 2.083774 CGGGTGCACAATGTACATCTT 58.916 47.619 20.43 0.00 34.53 2.40
2490 3952 3.266636 CGGGTGCACAATGTACATCTTA 58.733 45.455 20.43 0.00 34.53 2.10
2491 3953 3.309682 CGGGTGCACAATGTACATCTTAG 59.690 47.826 20.43 2.65 34.53 2.18
2492 3954 4.261801 GGGTGCACAATGTACATCTTAGT 58.738 43.478 20.43 3.28 34.53 2.24
2493 3955 4.094887 GGGTGCACAATGTACATCTTAGTG 59.905 45.833 20.43 15.43 34.53 2.74
2499 3961 7.552848 CACAATGTACATCTTAGTGCAAAAC 57.447 36.000 9.23 0.00 37.64 2.43
2500 3962 6.303022 CACAATGTACATCTTAGTGCAAAACG 59.697 38.462 9.23 0.00 37.64 3.60
2501 3963 4.398549 TGTACATCTTAGTGCAAAACGC 57.601 40.909 0.00 0.00 42.89 4.84
2502 3964 2.989422 ACATCTTAGTGCAAAACGCC 57.011 45.000 0.00 0.00 41.33 5.68
2503 3965 2.504367 ACATCTTAGTGCAAAACGCCT 58.496 42.857 0.00 0.00 41.33 5.52
2504 3966 2.884639 ACATCTTAGTGCAAAACGCCTT 59.115 40.909 0.00 0.00 41.33 4.35
2505 3967 4.069304 ACATCTTAGTGCAAAACGCCTTA 58.931 39.130 0.00 0.00 41.33 2.69
2506 3968 4.700213 ACATCTTAGTGCAAAACGCCTTAT 59.300 37.500 0.00 0.00 41.33 1.73
2507 3969 5.183140 ACATCTTAGTGCAAAACGCCTTATT 59.817 36.000 0.00 0.00 41.33 1.40
2508 3970 5.291293 TCTTAGTGCAAAACGCCTTATTC 57.709 39.130 0.00 0.00 41.33 1.75
2509 3971 2.611974 AGTGCAAAACGCCTTATTCG 57.388 45.000 0.00 0.00 41.33 3.34
2510 3972 1.877443 AGTGCAAAACGCCTTATTCGT 59.123 42.857 0.00 0.00 42.54 3.85
2511 3973 1.976045 GTGCAAAACGCCTTATTCGTG 59.024 47.619 0.00 0.00 40.36 4.35
2512 3974 1.874231 TGCAAAACGCCTTATTCGTGA 59.126 42.857 0.00 0.00 40.36 4.35
2513 3975 2.239201 GCAAAACGCCTTATTCGTGAC 58.761 47.619 0.00 0.00 40.36 3.67
2514 3976 2.350007 GCAAAACGCCTTATTCGTGACA 60.350 45.455 0.00 0.00 40.36 3.58
2515 3977 3.669557 GCAAAACGCCTTATTCGTGACAT 60.670 43.478 0.00 0.00 40.36 3.06
2516 3978 4.088648 CAAAACGCCTTATTCGTGACATC 58.911 43.478 0.00 0.00 40.36 3.06
2517 3979 2.665649 ACGCCTTATTCGTGACATCA 57.334 45.000 0.00 0.00 38.88 3.07
2518 3980 3.179443 ACGCCTTATTCGTGACATCAT 57.821 42.857 0.00 0.00 38.88 2.45
2519 3981 4.316205 ACGCCTTATTCGTGACATCATA 57.684 40.909 0.00 0.00 38.88 2.15
2520 3982 4.883083 ACGCCTTATTCGTGACATCATAT 58.117 39.130 0.00 0.00 38.88 1.78
2521 3983 4.686091 ACGCCTTATTCGTGACATCATATG 59.314 41.667 0.00 0.00 38.88 1.78
2522 3984 4.923281 CGCCTTATTCGTGACATCATATGA 59.077 41.667 8.10 8.10 0.00 2.15
2523 3985 5.164051 CGCCTTATTCGTGACATCATATGAC 60.164 44.000 7.78 0.00 0.00 3.06
2524 3986 5.928839 GCCTTATTCGTGACATCATATGACT 59.071 40.000 7.78 0.00 0.00 3.41
2525 3987 6.090088 GCCTTATTCGTGACATCATATGACTC 59.910 42.308 7.78 6.43 0.00 3.36
2526 3988 7.147976 CCTTATTCGTGACATCATATGACTCA 58.852 38.462 7.78 9.04 0.00 3.41
2527 3989 7.328005 CCTTATTCGTGACATCATATGACTCAG 59.672 40.741 7.78 6.49 0.00 3.35
2528 3990 5.582689 TTCGTGACATCATATGACTCAGT 57.417 39.130 7.78 4.67 0.00 3.41
2529 3991 5.175090 TCGTGACATCATATGACTCAGTC 57.825 43.478 7.78 13.55 0.00 3.51
2530 3992 4.036852 TCGTGACATCATATGACTCAGTCC 59.963 45.833 7.78 7.42 0.00 3.85
2531 3993 4.202050 CGTGACATCATATGACTCAGTCCA 60.202 45.833 7.78 3.41 0.00 4.02
2532 3994 5.046529 GTGACATCATATGACTCAGTCCAC 58.953 45.833 7.78 10.38 0.00 4.02
2533 3995 4.202050 TGACATCATATGACTCAGTCCACG 60.202 45.833 7.78 0.00 0.00 4.94
2534 3996 2.871182 TCATATGACTCAGTCCACGC 57.129 50.000 1.24 0.00 0.00 5.34
2535 3997 1.065551 TCATATGACTCAGTCCACGCG 59.934 52.381 3.53 3.53 0.00 6.01
2536 3998 0.249073 ATATGACTCAGTCCACGCGC 60.249 55.000 5.73 0.00 0.00 6.86
2537 3999 2.592623 TATGACTCAGTCCACGCGCG 62.593 60.000 30.96 30.96 0.00 6.86
2538 4000 4.400109 GACTCAGTCCACGCGCGA 62.400 66.667 39.36 12.20 0.00 5.87
2539 4001 4.702081 ACTCAGTCCACGCGCGAC 62.702 66.667 39.36 24.61 0.00 5.19
2553 4015 4.111016 CGACGCGTGCCTCTACCA 62.111 66.667 20.70 0.00 0.00 3.25
2554 4016 2.506438 GACGCGTGCCTCTACCAC 60.506 66.667 20.70 0.00 0.00 4.16
2555 4017 3.984200 GACGCGTGCCTCTACCACC 62.984 68.421 20.70 0.00 0.00 4.61
2556 4018 3.760035 CGCGTGCCTCTACCACCT 61.760 66.667 0.00 0.00 0.00 4.00
2557 4019 2.663196 GCGTGCCTCTACCACCTT 59.337 61.111 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.004080 CTGAGCCATATCGCCCCTG 60.004 63.158 0.00 0.00 0.00 4.45
1 2 1.460305 ACTGAGCCATATCGCCCCT 60.460 57.895 0.00 0.00 0.00 4.79
2 3 1.004440 GACTGAGCCATATCGCCCC 60.004 63.158 0.00 0.00 0.00 5.80
3 4 0.322975 ATGACTGAGCCATATCGCCC 59.677 55.000 0.00 0.00 0.00 6.13
4 5 1.001293 TGATGACTGAGCCATATCGCC 59.999 52.381 0.00 0.00 0.00 5.54
5 6 2.064762 GTGATGACTGAGCCATATCGC 58.935 52.381 0.00 0.00 0.00 4.58
6 7 3.005155 TCTGTGATGACTGAGCCATATCG 59.995 47.826 0.00 0.00 0.00 2.92
7 8 4.597404 TCTGTGATGACTGAGCCATATC 57.403 45.455 0.00 0.00 0.00 1.63
8 9 5.363562 TTTCTGTGATGACTGAGCCATAT 57.636 39.130 0.00 0.00 32.24 1.78
9 10 4.824479 TTTCTGTGATGACTGAGCCATA 57.176 40.909 0.00 0.00 32.24 2.74
10 11 3.708403 TTTCTGTGATGACTGAGCCAT 57.292 42.857 0.00 0.00 32.24 4.40
11 12 3.708403 ATTTCTGTGATGACTGAGCCA 57.292 42.857 0.00 0.00 32.24 4.75
12 13 5.293079 GTCTAATTTCTGTGATGACTGAGCC 59.707 44.000 0.00 0.00 32.24 4.70
13 14 6.105333 AGTCTAATTTCTGTGATGACTGAGC 58.895 40.000 0.00 0.00 32.90 4.26
14 15 9.299963 CTAAGTCTAATTTCTGTGATGACTGAG 57.700 37.037 0.00 0.00 34.17 3.35
15 16 9.025041 TCTAAGTCTAATTTCTGTGATGACTGA 57.975 33.333 0.00 0.00 34.17 3.41
16 17 9.081997 GTCTAAGTCTAATTTCTGTGATGACTG 57.918 37.037 0.00 0.00 34.17 3.51
17 18 9.030452 AGTCTAAGTCTAATTTCTGTGATGACT 57.970 33.333 0.00 0.00 35.20 3.41
18 19 9.296400 GAGTCTAAGTCTAATTTCTGTGATGAC 57.704 37.037 0.00 0.00 0.00 3.06
19 20 9.249053 AGAGTCTAAGTCTAATTTCTGTGATGA 57.751 33.333 0.00 0.00 0.00 2.92
20 21 9.868277 AAGAGTCTAAGTCTAATTTCTGTGATG 57.132 33.333 0.00 0.00 0.00 3.07
21 22 9.868277 CAAGAGTCTAAGTCTAATTTCTGTGAT 57.132 33.333 0.00 0.00 0.00 3.06
22 23 9.078990 TCAAGAGTCTAAGTCTAATTTCTGTGA 57.921 33.333 0.00 0.00 0.00 3.58
23 24 9.698309 TTCAAGAGTCTAAGTCTAATTTCTGTG 57.302 33.333 0.00 0.00 0.00 3.66
33 34 9.566432 ACAATCAAAATTCAAGAGTCTAAGTCT 57.434 29.630 0.00 0.00 0.00 3.24
53 54 8.930760 CGGCCTTCAAAAATAAAATTACAATCA 58.069 29.630 0.00 0.00 0.00 2.57
54 55 9.145865 TCGGCCTTCAAAAATAAAATTACAATC 57.854 29.630 0.00 0.00 0.00 2.67
55 56 9.150348 CTCGGCCTTCAAAAATAAAATTACAAT 57.850 29.630 0.00 0.00 0.00 2.71
56 57 7.117092 GCTCGGCCTTCAAAAATAAAATTACAA 59.883 33.333 0.00 0.00 0.00 2.41
57 58 6.588373 GCTCGGCCTTCAAAAATAAAATTACA 59.412 34.615 0.00 0.00 0.00 2.41
58 59 6.035650 GGCTCGGCCTTCAAAAATAAAATTAC 59.964 38.462 0.00 0.00 46.69 1.89
59 60 6.103330 GGCTCGGCCTTCAAAAATAAAATTA 58.897 36.000 0.00 0.00 46.69 1.40
60 61 4.935205 GGCTCGGCCTTCAAAAATAAAATT 59.065 37.500 0.00 0.00 46.69 1.82
61 62 4.503910 GGCTCGGCCTTCAAAAATAAAAT 58.496 39.130 0.00 0.00 46.69 1.82
62 63 3.920446 GGCTCGGCCTTCAAAAATAAAA 58.080 40.909 0.00 0.00 46.69 1.52
63 64 3.586100 GGCTCGGCCTTCAAAAATAAA 57.414 42.857 0.00 0.00 46.69 1.40
83 84 3.198068 ACTATGTGCTTCGCCATTAGTG 58.802 45.455 0.00 0.00 0.00 2.74
84 85 3.543680 ACTATGTGCTTCGCCATTAGT 57.456 42.857 0.00 0.00 0.00 2.24
85 86 4.882671 AAACTATGTGCTTCGCCATTAG 57.117 40.909 0.00 0.00 0.00 1.73
86 87 4.272504 GCTAAACTATGTGCTTCGCCATTA 59.727 41.667 0.00 0.00 0.00 1.90
87 88 3.065371 GCTAAACTATGTGCTTCGCCATT 59.935 43.478 0.00 0.00 0.00 3.16
88 89 2.614057 GCTAAACTATGTGCTTCGCCAT 59.386 45.455 0.00 0.00 0.00 4.40
89 90 2.006888 GCTAAACTATGTGCTTCGCCA 58.993 47.619 0.00 0.00 0.00 5.69
90 91 2.280628 AGCTAAACTATGTGCTTCGCC 58.719 47.619 0.00 0.00 30.96 5.54
91 92 4.551024 GCTTAGCTAAACTATGTGCTTCGC 60.551 45.833 7.74 0.00 37.02 4.70
92 93 4.566759 TGCTTAGCTAAACTATGTGCTTCG 59.433 41.667 7.74 0.00 37.02 3.79
93 94 5.582665 AGTGCTTAGCTAAACTATGTGCTTC 59.417 40.000 7.74 4.11 37.02 3.86
94 95 5.491982 AGTGCTTAGCTAAACTATGTGCTT 58.508 37.500 7.74 0.00 37.02 3.91
95 96 5.091261 AGTGCTTAGCTAAACTATGTGCT 57.909 39.130 7.74 0.00 39.30 4.40
96 97 5.803020 AAGTGCTTAGCTAAACTATGTGC 57.197 39.130 10.51 7.73 0.00 4.57
97 98 7.602517 AGAAAGTGCTTAGCTAAACTATGTG 57.397 36.000 10.51 0.00 0.00 3.21
98 99 8.622948 AAAGAAAGTGCTTAGCTAAACTATGT 57.377 30.769 10.51 1.44 0.00 2.29
99 100 8.940952 AGAAAGAAAGTGCTTAGCTAAACTATG 58.059 33.333 10.51 0.00 0.00 2.23
100 101 9.157104 GAGAAAGAAAGTGCTTAGCTAAACTAT 57.843 33.333 10.51 0.00 0.00 2.12
101 102 8.368668 AGAGAAAGAAAGTGCTTAGCTAAACTA 58.631 33.333 10.51 0.00 0.00 2.24
102 103 7.220740 AGAGAAAGAAAGTGCTTAGCTAAACT 58.779 34.615 7.74 6.32 0.00 2.66
103 104 7.428282 AGAGAAAGAAAGTGCTTAGCTAAAC 57.572 36.000 7.74 3.59 0.00 2.01
104 105 6.366332 CGAGAGAAAGAAAGTGCTTAGCTAAA 59.634 38.462 7.74 0.00 0.00 1.85
105 106 5.864474 CGAGAGAAAGAAAGTGCTTAGCTAA 59.136 40.000 5.60 5.94 0.00 3.09
106 107 5.403246 CGAGAGAAAGAAAGTGCTTAGCTA 58.597 41.667 5.60 0.00 0.00 3.32
107 108 4.241681 CGAGAGAAAGAAAGTGCTTAGCT 58.758 43.478 5.60 0.00 0.00 3.32
108 109 3.369451 CCGAGAGAAAGAAAGTGCTTAGC 59.631 47.826 0.00 0.00 0.00 3.09
109 110 4.561105 ACCGAGAGAAAGAAAGTGCTTAG 58.439 43.478 0.00 0.00 0.00 2.18
110 111 4.281182 AGACCGAGAGAAAGAAAGTGCTTA 59.719 41.667 0.00 0.00 0.00 3.09
111 112 3.070302 AGACCGAGAGAAAGAAAGTGCTT 59.930 43.478 0.00 0.00 0.00 3.91
112 113 2.630580 AGACCGAGAGAAAGAAAGTGCT 59.369 45.455 0.00 0.00 0.00 4.40
113 114 2.734079 CAGACCGAGAGAAAGAAAGTGC 59.266 50.000 0.00 0.00 0.00 4.40
114 115 3.321497 CCAGACCGAGAGAAAGAAAGTG 58.679 50.000 0.00 0.00 0.00 3.16
115 116 2.300437 CCCAGACCGAGAGAAAGAAAGT 59.700 50.000 0.00 0.00 0.00 2.66
116 117 2.563179 TCCCAGACCGAGAGAAAGAAAG 59.437 50.000 0.00 0.00 0.00 2.62
117 118 2.299297 GTCCCAGACCGAGAGAAAGAAA 59.701 50.000 0.00 0.00 0.00 2.52
118 119 1.893801 GTCCCAGACCGAGAGAAAGAA 59.106 52.381 0.00 0.00 0.00 2.52
119 120 1.546961 GTCCCAGACCGAGAGAAAGA 58.453 55.000 0.00 0.00 0.00 2.52
120 121 0.171455 CGTCCCAGACCGAGAGAAAG 59.829 60.000 0.00 0.00 0.00 2.62
121 122 1.874345 GCGTCCCAGACCGAGAGAAA 61.874 60.000 0.00 0.00 0.00 2.52
122 123 2.341101 GCGTCCCAGACCGAGAGAA 61.341 63.158 0.00 0.00 0.00 2.87
123 124 2.750637 GCGTCCCAGACCGAGAGA 60.751 66.667 0.00 0.00 0.00 3.10
124 125 3.827898 GGCGTCCCAGACCGAGAG 61.828 72.222 0.00 0.00 0.00 3.20
125 126 2.561467 TATGGCGTCCCAGACCGAGA 62.561 60.000 0.00 0.00 46.24 4.04
126 127 2.125326 TATGGCGTCCCAGACCGAG 61.125 63.158 0.00 0.00 46.24 4.63
127 128 2.043752 TATGGCGTCCCAGACCGA 60.044 61.111 0.00 0.00 46.24 4.69
128 129 2.106332 GTATGGCGTCCCAGACCG 59.894 66.667 0.00 0.00 45.49 4.79
131 132 1.904771 CCAAGTATGGCGTCCCAGA 59.095 57.895 0.00 0.00 46.24 3.86
132 133 4.540153 CCAAGTATGGCGTCCCAG 57.460 61.111 0.00 0.00 46.24 4.45
141 142 4.658063 TGGGGACTTAACAACCAAGTATG 58.342 43.478 0.00 0.00 36.38 2.39
142 143 5.014755 TCATGGGGACTTAACAACCAAGTAT 59.985 40.000 0.00 0.00 36.38 2.12
143 144 4.351407 TCATGGGGACTTAACAACCAAGTA 59.649 41.667 0.00 0.00 36.38 2.24
144 145 3.139397 TCATGGGGACTTAACAACCAAGT 59.861 43.478 0.00 0.00 38.92 3.16
145 146 3.761897 TCATGGGGACTTAACAACCAAG 58.238 45.455 0.00 0.00 34.45 3.61
146 147 3.885976 TCATGGGGACTTAACAACCAA 57.114 42.857 0.00 0.00 34.45 3.67
147 148 3.308832 GGATCATGGGGACTTAACAACCA 60.309 47.826 0.00 0.00 35.39 3.67
148 149 3.288092 GGATCATGGGGACTTAACAACC 58.712 50.000 0.00 0.00 0.00 3.77
149 150 2.943033 CGGATCATGGGGACTTAACAAC 59.057 50.000 0.00 0.00 0.00 3.32
150 151 2.841266 TCGGATCATGGGGACTTAACAA 59.159 45.455 0.00 0.00 0.00 2.83
151 152 2.473070 TCGGATCATGGGGACTTAACA 58.527 47.619 0.00 0.00 0.00 2.41
152 153 3.553828 TTCGGATCATGGGGACTTAAC 57.446 47.619 0.00 0.00 0.00 2.01
153 154 4.080015 ACAATTCGGATCATGGGGACTTAA 60.080 41.667 0.00 0.00 0.00 1.85
154 155 3.458118 ACAATTCGGATCATGGGGACTTA 59.542 43.478 0.00 0.00 0.00 2.24
155 156 2.242196 ACAATTCGGATCATGGGGACTT 59.758 45.455 0.00 0.00 0.00 3.01
156 157 1.846439 ACAATTCGGATCATGGGGACT 59.154 47.619 0.00 0.00 0.00 3.85
157 158 2.348411 ACAATTCGGATCATGGGGAC 57.652 50.000 0.00 0.00 0.00 4.46
158 159 3.009033 GGATACAATTCGGATCATGGGGA 59.991 47.826 0.00 0.00 0.00 4.81
159 160 3.347216 GGATACAATTCGGATCATGGGG 58.653 50.000 0.00 0.00 0.00 4.96
160 161 3.244875 TGGGATACAATTCGGATCATGGG 60.245 47.826 0.00 0.00 39.74 4.00
161 162 3.753272 GTGGGATACAATTCGGATCATGG 59.247 47.826 0.00 0.00 39.74 3.66
162 163 4.645535 AGTGGGATACAATTCGGATCATG 58.354 43.478 0.00 0.00 39.74 3.07
163 164 4.982241 AGTGGGATACAATTCGGATCAT 57.018 40.909 0.00 0.00 39.74 2.45
164 165 4.651962 TGTAGTGGGATACAATTCGGATCA 59.348 41.667 0.00 0.00 32.80 2.92
165 166 5.209818 TGTAGTGGGATACAATTCGGATC 57.790 43.478 0.00 0.00 32.80 3.36
166 167 5.071788 ACATGTAGTGGGATACAATTCGGAT 59.928 40.000 0.00 0.00 39.04 4.18
167 168 4.407621 ACATGTAGTGGGATACAATTCGGA 59.592 41.667 0.00 0.00 39.04 4.55
168 169 4.511454 CACATGTAGTGGGATACAATTCGG 59.489 45.833 0.00 0.00 44.69 4.30
169 170 5.657470 CACATGTAGTGGGATACAATTCG 57.343 43.478 0.00 0.00 44.69 3.34
227 228 4.137543 AGTTCGGATCACTGCTTCTTTTT 58.862 39.130 0.00 0.00 0.00 1.94
228 229 3.744660 AGTTCGGATCACTGCTTCTTTT 58.255 40.909 0.00 0.00 0.00 2.27
229 230 3.330267 GAGTTCGGATCACTGCTTCTTT 58.670 45.455 0.00 0.00 0.00 2.52
230 231 2.354203 GGAGTTCGGATCACTGCTTCTT 60.354 50.000 0.00 0.00 30.27 2.52
231 232 1.205893 GGAGTTCGGATCACTGCTTCT 59.794 52.381 0.00 0.00 30.27 2.85
232 233 1.646189 GGAGTTCGGATCACTGCTTC 58.354 55.000 0.00 0.00 30.27 3.86
233 234 0.250513 GGGAGTTCGGATCACTGCTT 59.749 55.000 0.00 0.00 33.32 3.91
234 235 1.617947 GGGGAGTTCGGATCACTGCT 61.618 60.000 0.00 0.00 33.32 4.24
235 236 1.153349 GGGGAGTTCGGATCACTGC 60.153 63.158 0.00 0.00 32.04 4.40
236 237 0.978146 AGGGGGAGTTCGGATCACTG 60.978 60.000 0.00 0.00 0.00 3.66
237 238 0.635009 TAGGGGGAGTTCGGATCACT 59.365 55.000 0.00 0.00 0.00 3.41
238 239 0.751452 GTAGGGGGAGTTCGGATCAC 59.249 60.000 0.00 0.00 0.00 3.06
239 240 0.337082 TGTAGGGGGAGTTCGGATCA 59.663 55.000 0.00 0.00 0.00 2.92
240 241 1.492764 TTGTAGGGGGAGTTCGGATC 58.507 55.000 0.00 0.00 0.00 3.36
241 242 1.961133 TTTGTAGGGGGAGTTCGGAT 58.039 50.000 0.00 0.00 0.00 4.18
242 243 1.732117 TTTTGTAGGGGGAGTTCGGA 58.268 50.000 0.00 0.00 0.00 4.55
243 244 2.572209 TTTTTGTAGGGGGAGTTCGG 57.428 50.000 0.00 0.00 0.00 4.30
259 260 7.100458 AGTACAGATCAGTGCTTTTGTTTTT 57.900 32.000 2.97 0.00 29.80 1.94
260 261 6.699575 AGTACAGATCAGTGCTTTTGTTTT 57.300 33.333 2.97 0.00 29.80 2.43
261 262 7.499232 ACTTAGTACAGATCAGTGCTTTTGTTT 59.501 33.333 13.72 0.00 35.94 2.83
262 263 6.992715 ACTTAGTACAGATCAGTGCTTTTGTT 59.007 34.615 13.72 0.00 35.94 2.83
263 264 6.525629 ACTTAGTACAGATCAGTGCTTTTGT 58.474 36.000 13.72 8.04 35.94 2.83
264 265 8.029522 TCTACTTAGTACAGATCAGTGCTTTTG 58.970 37.037 13.72 7.51 35.94 2.44
280 281 2.422479 CCGTGCTGCTGTCTACTTAGTA 59.578 50.000 0.00 0.00 0.00 1.82
284 285 0.038159 GACCGTGCTGCTGTCTACTT 60.038 55.000 0.00 0.00 0.00 2.24
285 286 0.896019 AGACCGTGCTGCTGTCTACT 60.896 55.000 15.06 0.67 39.40 2.57
327 328 4.579340 AGATGCATGCAGAAAATAGTGAGG 59.421 41.667 26.69 0.00 0.00 3.86
344 345 1.672030 CGGGCACTGTGAAGATGCA 60.672 57.895 12.86 0.00 41.27 3.96
379 380 5.096443 AGATCCAAGACCAAGTGATTCTC 57.904 43.478 0.00 0.00 0.00 2.87
406 442 0.798771 CAGTAGTCACGAAGAGGCGC 60.799 60.000 0.00 0.00 33.86 6.53
531 568 4.364409 GGACGGACGCAACGCAAC 62.364 66.667 0.00 0.00 34.00 4.17
532 569 4.893601 TGGACGGACGCAACGCAA 62.894 61.111 0.00 0.00 34.00 4.85
533 570 4.893601 TTGGACGGACGCAACGCA 62.894 61.111 0.00 0.00 34.00 5.24
534 571 4.072088 CTTGGACGGACGCAACGC 62.072 66.667 0.00 0.00 34.00 4.84
535 572 4.072088 GCTTGGACGGACGCAACG 62.072 66.667 0.00 0.00 37.36 4.10
637 680 1.597027 GTTGGGTCCGTCACCTGTG 60.597 63.158 1.09 0.00 45.95 3.66
638 681 1.628238 TTGTTGGGTCCGTCACCTGT 61.628 55.000 1.09 0.00 45.95 4.00
639 682 1.147376 TTGTTGGGTCCGTCACCTG 59.853 57.895 1.09 0.00 45.95 4.00
640 683 1.147600 GTTGTTGGGTCCGTCACCT 59.852 57.895 1.09 0.00 45.95 4.00
641 684 1.895231 GGTTGTTGGGTCCGTCACC 60.895 63.158 0.00 0.00 45.97 4.02
642 685 1.895231 GGGTTGTTGGGTCCGTCAC 60.895 63.158 0.00 0.00 0.00 3.67
681 724 2.685380 AAGTGGAGGGAGGAGCGG 60.685 66.667 0.00 0.00 0.00 5.52
770 813 2.398554 CGTTGATGTTGGGGGCTCG 61.399 63.158 0.00 0.00 0.00 5.03
774 817 0.250727 ACACTCGTTGATGTTGGGGG 60.251 55.000 0.00 0.00 0.00 5.40
790 1313 0.721718 GCGATGGCTCACTTGTACAC 59.278 55.000 0.00 0.00 35.83 2.90
791 1314 0.391130 GGCGATGGCTCACTTGTACA 60.391 55.000 0.00 0.00 39.81 2.90
863 1386 1.205893 AGTTAAGAAGCTCAGCGGGAG 59.794 52.381 4.29 4.29 46.93 4.30
1243 1775 3.123620 CTTCTGCTGCTGGGACGC 61.124 66.667 6.69 0.00 0.00 5.19
1635 2182 7.122550 GGTAGATCGTACTTGTAACTCTAACG 58.877 42.308 0.00 0.00 0.00 3.18
1658 2205 1.668294 CCAGAGACACGAAGCTGGT 59.332 57.895 0.00 0.00 42.26 4.00
1659 2206 4.586618 CCAGAGACACGAAGCTGG 57.413 61.111 0.00 0.00 41.62 4.85
1660 2207 1.269778 TGAACCAGAGACACGAAGCTG 60.270 52.381 0.00 0.00 0.00 4.24
1751 2298 2.715532 ATATGCTAGGCACGCCACCG 62.716 60.000 11.35 0.00 43.04 4.94
1756 2303 1.003545 CACACAATATGCTAGGCACGC 60.004 52.381 0.00 0.00 43.04 5.34
1807 2354 2.280552 TTCACCCTCGGAAGTCGGG 61.281 63.158 0.00 0.00 44.60 5.14
1838 2385 3.317993 ACCCACCGAGAACAATTTTCTTG 59.682 43.478 9.14 9.14 0.00 3.02
1888 2686 2.172505 ACAAATGTGGTGAGTCTGGTGA 59.827 45.455 0.00 0.00 0.00 4.02
1889 2687 2.575532 ACAAATGTGGTGAGTCTGGTG 58.424 47.619 0.00 0.00 0.00 4.17
1890 2688 3.297134 AACAAATGTGGTGAGTCTGGT 57.703 42.857 0.00 0.00 0.00 4.00
1891 2689 3.796504 GCAAACAAATGTGGTGAGTCTGG 60.797 47.826 0.00 0.00 0.00 3.86
1892 2690 3.181488 TGCAAACAAATGTGGTGAGTCTG 60.181 43.478 0.00 0.00 0.00 3.51
1893 2691 3.023119 TGCAAACAAATGTGGTGAGTCT 58.977 40.909 0.00 0.00 0.00 3.24
1894 2692 3.115554 GTGCAAACAAATGTGGTGAGTC 58.884 45.455 0.00 0.00 0.00 3.36
1895 2693 2.760092 AGTGCAAACAAATGTGGTGAGT 59.240 40.909 0.00 0.00 0.00 3.41
1896 2694 3.441496 AGTGCAAACAAATGTGGTGAG 57.559 42.857 0.00 0.00 0.00 3.51
2066 3505 6.331369 ACGGATTGAAATGAGTGAACAAAT 57.669 33.333 0.00 0.00 0.00 2.32
2187 3649 2.676076 CAAAATTTTGGCCTGTCCTCG 58.324 47.619 21.00 0.00 34.59 4.63
2208 3670 5.116882 CCCAACTAGTGCTGTTACTAATCC 58.883 45.833 0.00 0.00 33.09 3.01
2209 3671 5.105064 TCCCCAACTAGTGCTGTTACTAATC 60.105 44.000 0.00 0.00 33.09 1.75
2210 3672 4.781087 TCCCCAACTAGTGCTGTTACTAAT 59.219 41.667 0.00 0.00 33.09 1.73
2211 3673 4.161876 TCCCCAACTAGTGCTGTTACTAA 58.838 43.478 0.00 0.00 33.09 2.24
2212 3674 3.767673 CTCCCCAACTAGTGCTGTTACTA 59.232 47.826 0.00 0.00 32.19 1.82
2213 3675 2.567615 CTCCCCAACTAGTGCTGTTACT 59.432 50.000 0.00 0.00 34.71 2.24
2214 3676 2.302157 ACTCCCCAACTAGTGCTGTTAC 59.698 50.000 0.00 0.00 0.00 2.50
2220 3682 0.960861 GCCAACTCCCCAACTAGTGC 60.961 60.000 0.00 0.00 0.00 4.40
2294 3756 2.747989 TCTATGTGAGGACTGACGTGAC 59.252 50.000 0.00 0.00 0.00 3.67
2338 3800 3.305064 GGAGATGCTCTAAGACCGATGTC 60.305 52.174 0.00 0.00 42.09 3.06
2343 3805 2.166459 TGTTGGAGATGCTCTAAGACCG 59.834 50.000 0.00 0.00 31.92 4.79
2389 3851 2.606308 CGGCTGATGCTAATCATTTGCC 60.606 50.000 1.12 7.17 41.97 4.52
2390 3852 2.606308 CCGGCTGATGCTAATCATTTGC 60.606 50.000 0.00 0.00 41.97 3.68
2391 3853 2.606308 GCCGGCTGATGCTAATCATTTG 60.606 50.000 22.15 0.00 41.97 2.32
2392 3854 1.610522 GCCGGCTGATGCTAATCATTT 59.389 47.619 22.15 0.00 41.97 2.32
2393 3855 1.242076 GCCGGCTGATGCTAATCATT 58.758 50.000 22.15 0.00 41.97 2.57
2394 3856 0.607489 GGCCGGCTGATGCTAATCAT 60.607 55.000 28.56 0.00 41.97 2.45
2395 3857 1.227943 GGCCGGCTGATGCTAATCA 60.228 57.895 28.56 0.00 40.61 2.57
2396 3858 2.320587 CGGCCGGCTGATGCTAATC 61.321 63.158 32.31 5.57 39.59 1.75
2397 3859 2.116983 ATCGGCCGGCTGATGCTAAT 62.117 55.000 42.77 23.97 40.25 1.73
2398 3860 2.715532 GATCGGCCGGCTGATGCTAA 62.716 60.000 46.92 24.01 41.66 3.09
2399 3861 3.226429 GATCGGCCGGCTGATGCTA 62.226 63.158 46.92 24.77 41.66 3.49
2400 3862 4.615815 GATCGGCCGGCTGATGCT 62.616 66.667 46.92 30.29 41.66 3.79
2401 3863 4.615815 AGATCGGCCGGCTGATGC 62.616 66.667 46.92 35.57 41.66 3.91
2402 3864 2.356793 GAGATCGGCCGGCTGATG 60.357 66.667 46.92 25.44 41.66 3.07
2403 3865 3.620785 GGAGATCGGCCGGCTGAT 61.621 66.667 43.71 43.71 44.02 2.90
2404 3866 4.841617 AGGAGATCGGCCGGCTGA 62.842 66.667 38.68 38.68 35.60 4.26
2405 3867 4.598894 CAGGAGATCGGCCGGCTG 62.599 72.222 30.18 30.18 0.00 4.85
2406 3868 3.733507 TACAGGAGATCGGCCGGCT 62.734 63.158 28.56 22.87 0.00 5.52
2407 3869 3.214250 CTACAGGAGATCGGCCGGC 62.214 68.421 27.83 21.18 0.00 6.13
2408 3870 3.043419 CTACAGGAGATCGGCCGG 58.957 66.667 27.83 9.81 0.00 6.13
2409 3871 2.336809 GCTACAGGAGATCGGCCG 59.663 66.667 22.12 22.12 0.00 6.13
2410 3872 2.017559 AACGCTACAGGAGATCGGCC 62.018 60.000 0.00 0.00 0.00 6.13
2411 3873 0.595310 GAACGCTACAGGAGATCGGC 60.595 60.000 0.00 0.00 0.00 5.54
2412 3874 0.030908 GGAACGCTACAGGAGATCGG 59.969 60.000 0.00 0.00 0.00 4.18
2413 3875 3.553597 GGAACGCTACAGGAGATCG 57.446 57.895 0.00 0.00 0.00 3.69
2436 3898 4.827087 ATCTGGCGGCTGCACGAG 62.827 66.667 21.31 11.80 45.35 4.18
2437 3899 4.819761 GATCTGGCGGCTGCACGA 62.820 66.667 21.31 14.97 45.35 4.35
2439 3901 4.783621 TGGATCTGGCGGCTGCAC 62.784 66.667 21.31 9.50 45.35 4.57
2440 3902 3.982316 CTTGGATCTGGCGGCTGCA 62.982 63.158 21.31 4.60 45.35 4.41
2441 3903 3.207669 CTTGGATCTGGCGGCTGC 61.208 66.667 9.72 9.72 41.71 5.25
2442 3904 0.962356 AAACTTGGATCTGGCGGCTG 60.962 55.000 11.43 10.52 0.00 4.85
2443 3905 0.678048 GAAACTTGGATCTGGCGGCT 60.678 55.000 11.43 0.00 0.00 5.52
2444 3906 0.960364 TGAAACTTGGATCTGGCGGC 60.960 55.000 0.00 0.00 0.00 6.53
2445 3907 1.672881 GATGAAACTTGGATCTGGCGG 59.327 52.381 0.00 0.00 0.00 6.13
2446 3908 1.328680 CGATGAAACTTGGATCTGGCG 59.671 52.381 0.00 0.00 0.00 5.69
2447 3909 1.672881 CCGATGAAACTTGGATCTGGC 59.327 52.381 0.00 0.00 0.00 4.85
2448 3910 2.939103 GTCCGATGAAACTTGGATCTGG 59.061 50.000 0.00 0.00 31.25 3.86
2449 3911 2.604914 CGTCCGATGAAACTTGGATCTG 59.395 50.000 0.00 0.00 31.25 2.90
2450 3912 2.418746 CCGTCCGATGAAACTTGGATCT 60.419 50.000 0.00 0.00 31.25 2.75
2451 3913 1.933853 CCGTCCGATGAAACTTGGATC 59.066 52.381 0.00 0.00 31.25 3.36
2452 3914 1.406887 CCCGTCCGATGAAACTTGGAT 60.407 52.381 0.00 0.00 31.25 3.41
2453 3915 0.036765 CCCGTCCGATGAAACTTGGA 60.037 55.000 0.00 0.00 0.00 3.53
2454 3916 0.321298 ACCCGTCCGATGAAACTTGG 60.321 55.000 0.00 0.00 0.00 3.61
2455 3917 0.796312 CACCCGTCCGATGAAACTTG 59.204 55.000 0.00 0.00 0.00 3.16
2456 3918 0.953960 GCACCCGTCCGATGAAACTT 60.954 55.000 0.00 0.00 0.00 2.66
2457 3919 1.375523 GCACCCGTCCGATGAAACT 60.376 57.895 0.00 0.00 0.00 2.66
2458 3920 1.669760 TGCACCCGTCCGATGAAAC 60.670 57.895 0.00 0.00 0.00 2.78
2459 3921 1.669760 GTGCACCCGTCCGATGAAA 60.670 57.895 5.22 0.00 0.00 2.69
2460 3922 2.047655 GTGCACCCGTCCGATGAA 60.048 61.111 5.22 0.00 0.00 2.57
2461 3923 2.178876 ATTGTGCACCCGTCCGATGA 62.179 55.000 15.69 0.00 0.00 2.92
2462 3924 1.745115 ATTGTGCACCCGTCCGATG 60.745 57.895 15.69 0.00 0.00 3.84
2463 3925 1.745115 CATTGTGCACCCGTCCGAT 60.745 57.895 15.69 0.00 0.00 4.18
2464 3926 1.817911 TACATTGTGCACCCGTCCGA 61.818 55.000 15.69 0.00 0.00 4.55
2465 3927 1.374885 TACATTGTGCACCCGTCCG 60.375 57.895 15.69 0.00 0.00 4.79
2466 3928 0.604243 TGTACATTGTGCACCCGTCC 60.604 55.000 15.69 0.11 0.00 4.79
2467 3929 1.396996 GATGTACATTGTGCACCCGTC 59.603 52.381 15.69 0.46 29.98 4.79
2468 3930 1.003118 AGATGTACATTGTGCACCCGT 59.997 47.619 15.69 11.08 29.98 5.28
2469 3931 1.737838 AGATGTACATTGTGCACCCG 58.262 50.000 15.69 4.98 29.98 5.28
2470 3932 4.094887 CACTAAGATGTACATTGTGCACCC 59.905 45.833 15.69 5.52 29.98 4.61
2471 3933 4.437390 GCACTAAGATGTACATTGTGCACC 60.437 45.833 30.02 13.26 45.64 5.01
2472 3934 4.651994 GCACTAAGATGTACATTGTGCAC 58.348 43.478 30.02 10.75 45.64 4.57
2473 3935 4.944962 GCACTAAGATGTACATTGTGCA 57.055 40.909 30.02 10.06 45.64 4.57
2474 3936 4.944962 TGCACTAAGATGTACATTGTGC 57.055 40.909 29.22 29.22 46.26 4.57
2475 3937 6.303022 CGTTTTGCACTAAGATGTACATTGTG 59.697 38.462 10.30 16.06 0.00 3.33
2476 3938 6.370593 CGTTTTGCACTAAGATGTACATTGT 58.629 36.000 10.30 3.70 0.00 2.71
2477 3939 5.283717 GCGTTTTGCACTAAGATGTACATTG 59.716 40.000 10.30 4.96 45.45 2.82
2478 3940 5.390613 GCGTTTTGCACTAAGATGTACATT 58.609 37.500 10.30 0.00 45.45 2.71
2479 3941 4.969816 GCGTTTTGCACTAAGATGTACAT 58.030 39.130 8.43 8.43 45.45 2.29
2480 3942 4.398549 GCGTTTTGCACTAAGATGTACA 57.601 40.909 0.00 0.00 45.45 2.90
2493 3955 2.239201 GTCACGAATAAGGCGTTTTGC 58.761 47.619 0.00 0.00 40.44 3.68
2494 3956 3.529634 TGTCACGAATAAGGCGTTTTG 57.470 42.857 0.00 0.00 40.44 2.44
2495 3957 3.749088 TGATGTCACGAATAAGGCGTTTT 59.251 39.130 0.00 0.00 40.44 2.43
2496 3958 3.331150 TGATGTCACGAATAAGGCGTTT 58.669 40.909 0.00 0.00 40.44 3.60
2497 3959 2.967362 TGATGTCACGAATAAGGCGTT 58.033 42.857 0.00 0.00 40.44 4.84
2498 3960 2.665649 TGATGTCACGAATAAGGCGT 57.334 45.000 0.00 0.00 43.67 5.68
2499 3961 4.923281 TCATATGATGTCACGAATAAGGCG 59.077 41.667 0.00 0.00 0.00 5.52
2500 3962 5.928839 AGTCATATGATGTCACGAATAAGGC 59.071 40.000 9.02 0.00 0.00 4.35
2501 3963 7.147976 TGAGTCATATGATGTCACGAATAAGG 58.852 38.462 9.02 0.00 0.00 2.69
2502 3964 7.864882 ACTGAGTCATATGATGTCACGAATAAG 59.135 37.037 9.02 4.65 0.00 1.73
2503 3965 7.716612 ACTGAGTCATATGATGTCACGAATAA 58.283 34.615 9.02 0.00 0.00 1.40
2504 3966 7.277174 ACTGAGTCATATGATGTCACGAATA 57.723 36.000 9.02 0.00 0.00 1.75
2505 3967 6.154203 ACTGAGTCATATGATGTCACGAAT 57.846 37.500 9.02 0.00 0.00 3.34
2506 3968 5.450550 GGACTGAGTCATATGATGTCACGAA 60.451 44.000 15.33 5.29 33.68 3.85
2507 3969 4.036852 GGACTGAGTCATATGATGTCACGA 59.963 45.833 15.33 5.53 33.68 4.35
2508 3970 4.202050 TGGACTGAGTCATATGATGTCACG 60.202 45.833 15.33 16.41 33.68 4.35
2509 3971 5.046529 GTGGACTGAGTCATATGATGTCAC 58.953 45.833 15.33 6.06 33.68 3.67
2510 3972 4.202050 CGTGGACTGAGTCATATGATGTCA 60.202 45.833 15.33 18.94 33.68 3.58
2511 3973 4.294232 CGTGGACTGAGTCATATGATGTC 58.706 47.826 15.33 13.70 33.68 3.06
2512 3974 3.491619 GCGTGGACTGAGTCATATGATGT 60.492 47.826 15.33 6.07 33.68 3.06
2513 3975 3.055591 GCGTGGACTGAGTCATATGATG 58.944 50.000 15.33 2.95 33.68 3.07
2514 3976 2.287849 CGCGTGGACTGAGTCATATGAT 60.288 50.000 15.33 0.00 33.68 2.45
2515 3977 1.065551 CGCGTGGACTGAGTCATATGA 59.934 52.381 15.33 0.00 33.68 2.15
2516 3978 1.481240 CGCGTGGACTGAGTCATATG 58.519 55.000 15.33 9.13 33.68 1.78
2517 3979 0.249073 GCGCGTGGACTGAGTCATAT 60.249 55.000 15.33 0.00 33.68 1.78
2518 3980 1.138883 GCGCGTGGACTGAGTCATA 59.861 57.895 15.33 0.00 33.68 2.15
2519 3981 2.125912 GCGCGTGGACTGAGTCAT 60.126 61.111 15.33 0.00 33.68 3.06
2520 3982 4.700365 CGCGCGTGGACTGAGTCA 62.700 66.667 24.19 0.00 33.68 3.41
2521 3983 4.400109 TCGCGCGTGGACTGAGTC 62.400 66.667 30.98 3.47 0.00 3.36
2522 3984 4.702081 GTCGCGCGTGGACTGAGT 62.702 66.667 30.98 0.00 0.00 3.41
2536 3998 4.111016 TGGTAGAGGCACGCGTCG 62.111 66.667 9.86 6.55 36.13 5.12
2537 3999 2.506438 GTGGTAGAGGCACGCGTC 60.506 66.667 9.86 4.20 0.00 5.19
2538 4000 4.065281 GGTGGTAGAGGCACGCGT 62.065 66.667 5.58 5.58 0.00 6.01
2539 4001 3.296709 AAGGTGGTAGAGGCACGCG 62.297 63.158 3.53 3.53 0.00 6.01
2540 4002 2.663196 AAGGTGGTAGAGGCACGC 59.337 61.111 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.