Multiple sequence alignment - TraesCS4A01G251000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G251000 chr4A 100.000 4001 0 0 1478 5478 562403588 562407588 0.000000e+00 7389.0
1 TraesCS4A01G251000 chr4A 100.000 1093 0 0 1 1093 562402111 562403203 0.000000e+00 2019.0
2 TraesCS4A01G251000 chr4A 81.218 1954 341 16 3054 4984 562452434 562454384 0.000000e+00 1552.0
3 TraesCS4A01G251000 chr4A 100.000 406 0 0 5622 6027 562407732 562408137 0.000000e+00 750.0
4 TraesCS4A01G251000 chr4A 83.438 320 40 3 100 414 47147125 47146814 9.890000e-73 285.0
5 TraesCS4A01G251000 chr4A 94.595 74 2 2 12 84 562402194 562402122 4.940000e-21 113.0
6 TraesCS4A01G251000 chr4B 95.953 2990 78 15 2351 5335 55925909 55922958 0.000000e+00 4811.0
7 TraesCS4A01G251000 chr4B 81.199 1952 339 20 3057 4984 55756175 55754228 0.000000e+00 1546.0
8 TraesCS4A01G251000 chr4B 92.157 459 29 5 1905 2357 55926489 55926032 5.090000e-180 641.0
9 TraesCS4A01G251000 chr4B 87.668 446 24 21 1478 1904 55926957 55926524 1.950000e-134 490.0
10 TraesCS4A01G251000 chr4B 83.208 399 36 16 294 678 55927962 55927581 2.690000e-88 337.0
11 TraesCS4A01G251000 chr4B 78.970 466 46 16 673 1093 55927471 55927013 2.770000e-68 270.0
12 TraesCS4A01G251000 chr4B 83.746 283 35 7 102 384 437400622 437400351 2.160000e-64 257.0
13 TraesCS4A01G251000 chr4B 85.405 185 14 6 79 259 55928291 55928116 4.800000e-41 180.0
14 TraesCS4A01G251000 chr4B 87.500 88 4 4 14 95 640669816 640669730 1.790000e-15 95.3
15 TraesCS4A01G251000 chr4D 97.277 2607 44 11 2762 5364 38446070 38448653 0.000000e+00 4396.0
16 TraesCS4A01G251000 chr4D 81.506 1952 333 18 3057 4984 38354514 38352567 0.000000e+00 1580.0
17 TraesCS4A01G251000 chr4D 89.114 542 33 6 1913 2445 38444823 38445347 0.000000e+00 651.0
18 TraesCS4A01G251000 chr4D 91.049 391 16 11 1518 1899 38444386 38444766 1.500000e-140 510.0
19 TraesCS4A01G251000 chr4D 86.740 181 18 4 240 417 353916218 353916041 4.770000e-46 196.0
20 TraesCS4A01G251000 chr4D 94.545 110 6 0 2651 2760 38445691 38445800 2.890000e-38 171.0
21 TraesCS4A01G251000 chr4D 92.437 119 8 1 2448 2565 38445428 38445546 1.040000e-37 169.0
22 TraesCS4A01G251000 chr4D 77.177 333 42 20 5628 5940 38448749 38449067 4.830000e-36 163.0
23 TraesCS4A01G251000 chr4D 82.292 192 7 11 912 1076 38443741 38443932 2.260000e-29 141.0
24 TraesCS4A01G251000 chr4D 87.037 54 5 2 5731 5783 682424 682372 6.520000e-05 60.2
25 TraesCS4A01G251000 chr6D 82.202 1517 240 23 3057 4552 67392592 67391085 0.000000e+00 1279.0
26 TraesCS4A01G251000 chr6D 82.552 384 61 5 4603 4982 67391064 67390683 3.480000e-87 333.0
27 TraesCS4A01G251000 chr6D 97.059 68 0 1 15 82 87332498 87332563 4.940000e-21 113.0
28 TraesCS4A01G251000 chr6D 88.679 53 5 1 5731 5783 8005179 8005128 5.040000e-06 63.9
29 TraesCS4A01G251000 chr6D 89.796 49 5 0 5732 5780 30073907 30073955 5.040000e-06 63.9
30 TraesCS4A01G251000 chr6A 82.190 1516 242 21 3057 4552 84970281 84968774 0.000000e+00 1279.0
31 TraesCS4A01G251000 chr6A 80.729 384 68 5 4603 4982 84968753 84968372 1.640000e-75 294.0
32 TraesCS4A01G251000 chrUn 100.000 386 0 0 3405 3790 480666151 480666536 0.000000e+00 713.0
33 TraesCS4A01G251000 chrUn 94.231 52 2 1 46 96 371558085 371558034 1.800000e-10 78.7
34 TraesCS4A01G251000 chrUn 94.231 52 2 1 46 96 371616892 371616841 1.800000e-10 78.7
35 TraesCS4A01G251000 chr1D 85.911 291 31 5 97 387 377809391 377809671 9.820000e-78 302.0
36 TraesCS4A01G251000 chr1D 96.970 66 1 1 18 82 8284299 8284234 6.390000e-20 110.0
37 TraesCS4A01G251000 chr1D 95.652 69 2 1 15 82 8284236 8284304 6.390000e-20 110.0
38 TraesCS4A01G251000 chr1D 92.105 76 6 0 8 83 6327177 6327252 2.300000e-19 108.0
39 TraesCS4A01G251000 chr1B 84.536 291 36 4 97 387 505077352 505077633 4.600000e-71 279.0
40 TraesCS4A01G251000 chr2A 84.615 195 25 3 215 406 195358973 195358781 7.970000e-44 189.0
41 TraesCS4A01G251000 chr7B 92.308 78 6 0 11 88 457244584 457244661 1.780000e-20 111.0
42 TraesCS4A01G251000 chr2D 90.000 90 2 4 8 92 261736229 261736142 6.390000e-20 110.0
43 TraesCS4A01G251000 chr2D 88.889 72 5 3 5933 6004 56534256 56534324 1.080000e-12 86.1
44 TraesCS4A01G251000 chr1A 96.970 66 1 1 18 82 353252788 353252723 6.390000e-20 110.0
45 TraesCS4A01G251000 chr1A 97.059 34 1 0 5749 5782 551896908 551896875 2.350000e-04 58.4
46 TraesCS4A01G251000 chr3A 92.000 75 4 1 10 82 430527810 430527884 2.970000e-18 104.0
47 TraesCS4A01G251000 chr3A 84.091 88 7 2 18 99 15076530 15076444 1.800000e-10 78.7
48 TraesCS4A01G251000 chr6B 86.207 87 5 4 14 94 298647884 298647799 2.990000e-13 87.9
49 TraesCS4A01G251000 chr6B 87.755 49 6 0 5733 5781 57457347 57457299 2.350000e-04 58.4
50 TraesCS4A01G251000 chr3B 95.918 49 2 0 46 94 2308961 2309009 5.010000e-11 80.5
51 TraesCS4A01G251000 chr5A 94.231 52 2 1 46 96 30009499 30009448 1.800000e-10 78.7
52 TraesCS4A01G251000 chr5A 94.231 52 2 1 46 96 30013588 30013537 1.800000e-10 78.7
53 TraesCS4A01G251000 chr5B 97.619 42 0 1 46 87 432174750 432174790 3.010000e-08 71.3
54 TraesCS4A01G251000 chr7A 91.667 48 4 0 5733 5780 608920968 608921015 3.900000e-07 67.6
55 TraesCS4A01G251000 chr7A 91.667 48 4 0 5733 5780 699805397 699805350 3.900000e-07 67.6
56 TraesCS4A01G251000 chr7A 90.000 50 4 1 5731 5780 49640310 49640358 5.040000e-06 63.9
57 TraesCS4A01G251000 chr7D 89.130 46 3 2 5731 5776 633725667 633725624 8.440000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G251000 chr4A 562402111 562408137 6026 False 3386.000000 7389 100.000000 1 6027 3 chr4A.!!$F2 6026
1 TraesCS4A01G251000 chr4A 562452434 562454384 1950 False 1552.000000 1552 81.218000 3054 4984 1 chr4A.!!$F1 1930
2 TraesCS4A01G251000 chr4B 55754228 55756175 1947 True 1546.000000 1546 81.199000 3057 4984 1 chr4B.!!$R1 1927
3 TraesCS4A01G251000 chr4B 55922958 55928291 5333 True 1121.500000 4811 87.226833 79 5335 6 chr4B.!!$R4 5256
4 TraesCS4A01G251000 chr4D 38352567 38354514 1947 True 1580.000000 1580 81.506000 3057 4984 1 chr4D.!!$R2 1927
5 TraesCS4A01G251000 chr4D 38443741 38449067 5326 False 885.857143 4396 89.127286 912 5940 7 chr4D.!!$F1 5028
6 TraesCS4A01G251000 chr6D 67390683 67392592 1909 True 806.000000 1279 82.377000 3057 4982 2 chr6D.!!$R2 1925
7 TraesCS4A01G251000 chr6A 84968372 84970281 1909 True 786.500000 1279 81.459500 3057 4982 2 chr6A.!!$R1 1925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 688 0.110486 GGTGCCAGAGAAAGACCCAA 59.890 55.0 0.00 0.0 0.00 4.12 F
1980 2383 0.039978 AGCGATCTCGTATGGAAGCG 60.040 55.0 1.14 0.0 42.22 4.68 F
1982 2385 0.387367 CGATCTCGTATGGAAGCGGG 60.387 60.0 0.00 0.0 34.11 6.13 F
2039 2442 0.699231 ATGGGGGAATCTGGAGGGAC 60.699 60.0 0.00 0.0 0.00 4.46 F
2100 2511 0.790814 GCAGACGCTGTACCTGTTTC 59.209 55.0 8.32 0.0 33.43 2.78 F
3955 4950 1.212616 GTGTCATCTACAGCATCCGC 58.787 55.0 0.00 0.0 39.29 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2039 2442 0.179100 ACCCACGAATCGAGCTGATG 60.179 55.000 10.55 0.0 37.39 3.07 R
3118 4098 1.072332 TTTGCAGCAAGCCCGAGTA 59.928 52.632 8.12 0.0 44.83 2.59 R
3403 4398 1.234821 GTTGAACAATGTGGAGCGGA 58.765 50.000 0.00 0.0 0.00 5.54 R
3955 4950 8.452989 AAGCTTTTATGAACTTTATGCTTTCG 57.547 30.769 0.00 0.0 35.11 3.46 R
4738 5736 2.145397 ACTCTTGGATGCGAGGAGTA 57.855 50.000 1.05 0.0 35.79 2.59 R
5442 6451 0.319900 GAGCAGGACGAGCAAGAACA 60.320 55.000 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.691661 AAAATTGCTAAGTTCTTCCTCTGTAA 57.308 30.769 0.00 0.00 0.00 2.41
26 27 8.691661 AAATTGCTAAGTTCTTCCTCTGTAAA 57.308 30.769 0.00 0.00 0.00 2.01
27 28 7.674471 ATTGCTAAGTTCTTCCTCTGTAAAC 57.326 36.000 0.00 0.00 0.00 2.01
28 29 6.420913 TGCTAAGTTCTTCCTCTGTAAACT 57.579 37.500 0.00 0.00 0.00 2.66
29 30 7.534723 TGCTAAGTTCTTCCTCTGTAAACTA 57.465 36.000 0.00 0.00 30.37 2.24
30 31 7.959175 TGCTAAGTTCTTCCTCTGTAAACTAA 58.041 34.615 0.00 0.00 30.37 2.24
31 32 8.594550 TGCTAAGTTCTTCCTCTGTAAACTAAT 58.405 33.333 0.00 0.00 30.37 1.73
40 41 9.400638 CTTCCTCTGTAAACTAATATAAGAGCG 57.599 37.037 0.00 0.00 0.00 5.03
41 42 8.461249 TCCTCTGTAAACTAATATAAGAGCGT 57.539 34.615 0.00 0.00 0.00 5.07
42 43 8.910944 TCCTCTGTAAACTAATATAAGAGCGTT 58.089 33.333 0.00 0.00 0.00 4.84
43 44 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
76 77 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
77 78 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
91 92 8.657712 AGTTTACAGAGGGAGTAACAATTAAGT 58.342 33.333 0.00 0.00 31.67 2.24
92 93 9.933723 GTTTACAGAGGGAGTAACAATTAAGTA 57.066 33.333 0.00 0.00 31.67 2.24
126 131 5.439721 AGCATCTCCAACAACATTGCTATA 58.560 37.500 0.00 0.00 37.21 1.31
128 133 5.506317 GCATCTCCAACAACATTGCTATACC 60.506 44.000 0.00 0.00 0.00 2.73
135 140 4.920376 ACAACATTGCTATACCGAATTGC 58.080 39.130 0.00 0.00 36.92 3.56
137 142 5.820423 ACAACATTGCTATACCGAATTGCTA 59.180 36.000 5.94 0.22 37.25 3.49
140 145 6.959361 ACATTGCTATACCGAATTGCTAAAG 58.041 36.000 5.94 0.76 37.25 1.85
144 149 8.896320 TTGCTATACCGAATTGCTAAAGATTA 57.104 30.769 5.94 0.00 37.25 1.75
164 169 9.600432 AAGATTAGGTATAGCAAGAAGAGAGAT 57.400 33.333 4.48 0.00 0.00 2.75
168 173 7.227049 AGGTATAGCAAGAAGAGAGATAAGC 57.773 40.000 4.48 0.00 0.00 3.09
179 184 7.390027 AGAAGAGAGATAAGCTTTAGCAAACA 58.610 34.615 3.20 0.00 45.16 2.83
182 187 6.370166 AGAGAGATAAGCTTTAGCAAACACAC 59.630 38.462 3.20 0.00 45.16 3.82
184 189 6.712547 AGAGATAAGCTTTAGCAAACACACTT 59.287 34.615 3.20 0.00 45.16 3.16
185 190 7.229506 AGAGATAAGCTTTAGCAAACACACTTT 59.770 33.333 3.20 0.00 45.16 2.66
186 191 7.716612 AGATAAGCTTTAGCAAACACACTTTT 58.283 30.769 3.20 0.00 45.16 2.27
215 220 5.070714 TGCTCCAATGGCATTGCTATAAAAT 59.929 36.000 30.21 0.00 38.92 1.82
216 221 6.267242 TGCTCCAATGGCATTGCTATAAAATA 59.733 34.615 30.21 9.47 38.92 1.40
217 222 7.153985 GCTCCAATGGCATTGCTATAAAATAA 58.846 34.615 30.21 7.49 38.92 1.40
218 223 7.656948 GCTCCAATGGCATTGCTATAAAATAAA 59.343 33.333 30.21 6.20 38.92 1.40
219 224 9.545105 CTCCAATGGCATTGCTATAAAATAAAA 57.455 29.630 30.21 5.02 38.92 1.52
242 247 7.707624 AATTTTAGCAATCCTCTCAATGACA 57.292 32.000 0.00 0.00 0.00 3.58
277 282 4.373116 GACGCGGGTCAGCAGGAA 62.373 66.667 25.93 0.00 42.91 3.36
278 283 3.665675 GACGCGGGTCAGCAGGAAT 62.666 63.158 25.93 0.00 42.91 3.01
279 284 2.436646 CGCGGGTCAGCAGGAATT 60.437 61.111 0.00 0.00 36.85 2.17
280 285 2.040544 CGCGGGTCAGCAGGAATTT 61.041 57.895 0.00 0.00 36.85 1.82
281 286 0.742990 CGCGGGTCAGCAGGAATTTA 60.743 55.000 0.00 0.00 36.85 1.40
282 287 1.017387 GCGGGTCAGCAGGAATTTAG 58.983 55.000 0.00 0.00 37.05 1.85
283 288 1.668419 CGGGTCAGCAGGAATTTAGG 58.332 55.000 0.00 0.00 0.00 2.69
284 289 1.747206 CGGGTCAGCAGGAATTTAGGG 60.747 57.143 0.00 0.00 0.00 3.53
285 290 1.410224 GGGTCAGCAGGAATTTAGGGG 60.410 57.143 0.00 0.00 0.00 4.79
286 291 1.410224 GGTCAGCAGGAATTTAGGGGG 60.410 57.143 0.00 0.00 0.00 5.40
301 424 3.717294 GGGGCGATGTGGTCCACT 61.717 66.667 22.56 8.50 35.11 4.00
304 427 1.302511 GGCGATGTGGTCCACTTGT 60.303 57.895 22.56 8.99 35.11 3.16
310 433 1.979855 TGTGGTCCACTTGTCAATGG 58.020 50.000 22.56 7.39 35.11 3.16
387 513 9.771534 AAGTGCCTTTTAACTTTGCAAATATAA 57.228 25.926 13.23 11.80 32.75 0.98
388 514 9.423061 AGTGCCTTTTAACTTTGCAAATATAAG 57.577 29.630 13.23 12.71 33.11 1.73
389 515 9.203421 GTGCCTTTTAACTTTGCAAATATAAGT 57.797 29.630 13.23 3.36 33.11 2.24
390 516 9.202273 TGCCTTTTAACTTTGCAAATATAAGTG 57.798 29.630 13.23 10.43 32.76 3.16
391 517 9.203421 GCCTTTTAACTTTGCAAATATAAGTGT 57.797 29.630 13.23 2.06 32.76 3.55
417 552 6.774656 AGGAGCAAATATAGCAAGCTTTGTAT 59.225 34.615 0.00 0.00 35.36 2.29
418 553 7.286316 AGGAGCAAATATAGCAAGCTTTGTATT 59.714 33.333 0.00 0.00 35.36 1.89
431 566 9.196552 GCAAGCTTTGTATTATTTTTCTTCAGT 57.803 29.630 0.00 0.00 0.00 3.41
463 598 7.417342 GCAATCCTAACCAAATATACAAAGGCA 60.417 37.037 0.00 0.00 0.00 4.75
464 599 8.474025 CAATCCTAACCAAATATACAAAGGCAA 58.526 33.333 0.00 0.00 0.00 4.52
465 600 8.602472 ATCCTAACCAAATATACAAAGGCAAA 57.398 30.769 0.00 0.00 0.00 3.68
466 601 8.602472 TCCTAACCAAATATACAAAGGCAAAT 57.398 30.769 0.00 0.00 0.00 2.32
467 602 9.702253 TCCTAACCAAATATACAAAGGCAAATA 57.298 29.630 0.00 0.00 0.00 1.40
487 622 8.830580 GCAAATATAAGTGTTGAAGATGCTCTA 58.169 33.333 0.00 0.00 0.00 2.43
491 626 9.890629 ATATAAGTGTTGAAGATGCTCTAAACA 57.109 29.630 8.77 8.77 33.49 2.83
492 627 8.798859 ATAAGTGTTGAAGATGCTCTAAACAT 57.201 30.769 12.85 0.00 36.35 2.71
496 631 7.332926 AGTGTTGAAGATGCTCTAAACATGTAG 59.667 37.037 0.00 0.00 36.35 2.74
515 650 9.859427 ACATGTAGAATTGACATTTTGTTATGG 57.141 29.630 0.00 0.00 35.31 2.74
546 681 2.859165 CCTAACAGGTGCCAGAGAAA 57.141 50.000 0.00 0.00 0.00 2.52
547 682 2.704572 CCTAACAGGTGCCAGAGAAAG 58.295 52.381 0.00 0.00 0.00 2.62
551 686 0.322008 CAGGTGCCAGAGAAAGACCC 60.322 60.000 0.00 0.00 0.00 4.46
553 688 0.110486 GGTGCCAGAGAAAGACCCAA 59.890 55.000 0.00 0.00 0.00 4.12
554 689 1.272147 GGTGCCAGAGAAAGACCCAAT 60.272 52.381 0.00 0.00 0.00 3.16
564 699 2.044123 AAGACCCAATGATCTTCCGC 57.956 50.000 0.00 0.00 28.79 5.54
572 707 1.472662 ATGATCTTCCGCGGGGGTAG 61.473 60.000 27.83 17.17 37.00 3.18
579 714 2.812178 CGCGGGGGTAGAAACACG 60.812 66.667 0.00 0.00 0.00 4.49
595 730 1.675483 ACACGTCACATGCATGTTGTT 59.325 42.857 29.48 11.48 39.39 2.83
598 733 3.907788 CACGTCACATGCATGTTGTTAAG 59.092 43.478 29.48 16.92 39.39 1.85
669 804 2.977169 CCGTGCAGATTAAAACCAAACG 59.023 45.455 0.00 0.00 0.00 3.60
670 805 2.977169 CGTGCAGATTAAAACCAAACGG 59.023 45.455 0.00 0.00 0.00 4.44
671 806 3.313690 GTGCAGATTAAAACCAAACGGG 58.686 45.455 0.00 0.00 44.81 5.28
718 968 8.835439 CAAACCAAAACTGCAACCTAATTAAAT 58.165 29.630 0.00 0.00 0.00 1.40
720 970 8.601845 ACCAAAACTGCAACCTAATTAAATTC 57.398 30.769 0.00 0.00 0.00 2.17
748 998 0.392706 GCCCAACCCTCCTTTTGTTG 59.607 55.000 0.00 0.00 39.20 3.33
764 1042 0.377203 GTTGTGCTTGGCGGTATAGC 59.623 55.000 0.00 0.00 35.50 2.97
768 1046 0.463654 TGCTTGGCGGTATAGCTTGG 60.464 55.000 0.00 0.00 35.93 3.61
858 1136 1.154836 CGAGCAACGCGAAACAGTC 60.155 57.895 15.93 0.09 34.51 3.51
867 1145 1.732732 CGCGAAACAGTCTCCGAGAAT 60.733 52.381 0.00 0.00 0.00 2.40
1033 1360 1.304547 CGTCACTCACTCCCCTCCT 60.305 63.158 0.00 0.00 0.00 3.69
1061 1391 2.450886 ACCAAAGAAATTCTCCCCCAGT 59.549 45.455 0.00 0.00 0.00 4.00
1062 1392 3.660669 ACCAAAGAAATTCTCCCCCAGTA 59.339 43.478 0.00 0.00 0.00 2.74
1528 1871 4.688966 GGCGCCCCCGATCATCTC 62.689 72.222 18.11 0.00 36.29 2.75
1530 1873 2.919856 CGCCCCCGATCATCTCCT 60.920 66.667 0.00 0.00 36.29 3.69
1531 1874 2.936912 CGCCCCCGATCATCTCCTC 61.937 68.421 0.00 0.00 36.29 3.71
1532 1875 2.588201 GCCCCCGATCATCTCCTCC 61.588 68.421 0.00 0.00 0.00 4.30
1533 1876 1.157276 CCCCCGATCATCTCCTCCT 59.843 63.158 0.00 0.00 0.00 3.69
1537 1880 0.178950 CCGATCATCTCCTCCTCCCA 60.179 60.000 0.00 0.00 0.00 4.37
1548 1891 0.467106 CTCCTCCCATCTCGCTCTCA 60.467 60.000 0.00 0.00 0.00 3.27
1582 1926 3.007940 CCCAAAACTTTCCAAATCCCTCC 59.992 47.826 0.00 0.00 0.00 4.30
1594 1938 2.196304 ATCCCTCCCCTTTCCCGACT 62.196 60.000 0.00 0.00 0.00 4.18
1595 1939 2.368011 CCCTCCCCTTTCCCGACTC 61.368 68.421 0.00 0.00 0.00 3.36
1632 1984 0.799152 CGCCGCGGGTTTTAATTTCC 60.799 55.000 29.38 3.86 0.00 3.13
1843 2202 2.288961 TTCATCTAGGGTTCGTTCGC 57.711 50.000 0.00 0.00 0.00 4.70
1846 2205 2.357009 TCATCTAGGGTTCGTTCGCTAC 59.643 50.000 0.00 0.00 32.95 3.58
1899 2258 1.454479 CCGCTCATGGCCCAAATCT 60.454 57.895 0.00 0.00 37.74 2.40
1901 2260 1.679139 CGCTCATGGCCCAAATCTTA 58.321 50.000 0.00 0.00 37.74 2.10
1902 2261 1.334869 CGCTCATGGCCCAAATCTTAC 59.665 52.381 0.00 0.00 37.74 2.34
1903 2262 2.659428 GCTCATGGCCCAAATCTTACT 58.341 47.619 0.00 0.00 34.27 2.24
1904 2263 2.360165 GCTCATGGCCCAAATCTTACTG 59.640 50.000 0.00 0.00 34.27 2.74
1905 2264 3.624777 CTCATGGCCCAAATCTTACTGT 58.375 45.455 0.00 0.00 0.00 3.55
1906 2265 4.019174 CTCATGGCCCAAATCTTACTGTT 58.981 43.478 0.00 0.00 0.00 3.16
1907 2266 3.763360 TCATGGCCCAAATCTTACTGTTG 59.237 43.478 0.00 0.00 0.00 3.33
1908 2267 3.237268 TGGCCCAAATCTTACTGTTGT 57.763 42.857 0.00 0.00 0.00 3.32
1909 2268 2.890311 TGGCCCAAATCTTACTGTTGTG 59.110 45.455 0.00 0.00 0.00 3.33
1910 2269 2.352715 GGCCCAAATCTTACTGTTGTGC 60.353 50.000 0.00 0.00 0.00 4.57
1911 2270 2.668279 GCCCAAATCTTACTGTTGTGCG 60.668 50.000 0.00 0.00 0.00 5.34
1939 2341 2.550180 GGCTTCTTGTGTCCAGTTCTTC 59.450 50.000 0.00 0.00 0.00 2.87
1943 2345 2.771943 TCTTGTGTCCAGTTCTTCCTGT 59.228 45.455 0.00 0.00 0.00 4.00
1980 2383 0.039978 AGCGATCTCGTATGGAAGCG 60.040 55.000 1.14 0.00 42.22 4.68
1981 2384 1.004277 GCGATCTCGTATGGAAGCGG 61.004 60.000 1.14 0.00 42.22 5.52
1982 2385 0.387367 CGATCTCGTATGGAAGCGGG 60.387 60.000 0.00 0.00 34.11 6.13
1988 2391 1.300697 GTATGGAAGCGGGTAGGCG 60.301 63.158 0.00 0.00 38.18 5.52
2036 2439 1.849116 CCATGGGGGAATCTGGAGG 59.151 63.158 2.85 0.00 40.01 4.30
2039 2442 0.699231 ATGGGGGAATCTGGAGGGAC 60.699 60.000 0.00 0.00 0.00 4.46
2100 2511 0.790814 GCAGACGCTGTACCTGTTTC 59.209 55.000 8.32 0.00 33.43 2.78
2365 2906 7.133513 CAGACTACTAGAGCTACCATTTAACG 58.866 42.308 0.00 0.00 0.00 3.18
2397 2938 4.384208 CCATCCTGGAGTAACTTAACTGGG 60.384 50.000 1.52 0.00 40.96 4.45
2538 3157 4.320202 GCCAGCGAAACATACTTCTTTTGA 60.320 41.667 0.00 0.00 0.00 2.69
2565 3276 8.946797 AGGCATATTAAAGGCTATGATTTCTT 57.053 30.769 0.00 0.00 39.04 2.52
2566 3277 9.372189 AGGCATATTAAAGGCTATGATTTCTTT 57.628 29.630 0.00 0.00 39.04 2.52
2590 3301 9.781834 TTTTGTGTATTACTTCTTTTGACAGTG 57.218 29.630 0.00 0.00 0.00 3.66
2595 3306 7.771361 TGTATTACTTCTTTTGACAGTGGTTCA 59.229 33.333 0.00 0.00 0.00 3.18
2760 3740 7.450634 TCTTGCCTCACTACTACTCTAGAAAAA 59.549 37.037 0.00 0.00 0.00 1.94
2805 3785 7.665559 ACTTTACCATGTTATATGTATGCCAGG 59.334 37.037 0.00 0.00 0.00 4.45
2959 3939 4.193826 TGATGAACTAGCTCAAGGTGAC 57.806 45.455 0.00 0.00 0.00 3.67
3118 4098 3.806667 GATGCTGCTGGAGGGGCT 61.807 66.667 0.00 0.00 0.00 5.19
3344 4339 7.551948 CAGATATACTGGTTATGCGAATGCGT 61.552 42.308 0.00 0.00 42.68 5.24
3955 4950 1.212616 GTGTCATCTACAGCATCCGC 58.787 55.000 0.00 0.00 39.29 5.54
4147 5142 9.554395 TTCATTACACTAGAAACAGTTGATGAA 57.446 29.630 0.00 0.00 29.69 2.57
4738 5736 2.438411 CAGTACCTGGACGAGTCTCTT 58.562 52.381 0.00 0.00 0.00 2.85
4759 5760 1.205893 ACTCCTCGCATCCAAGAGTTC 59.794 52.381 0.00 0.00 34.17 3.01
4771 5772 5.152623 TCCAAGAGTTCGACATTCTCAAT 57.847 39.130 0.00 0.00 0.00 2.57
4894 5898 2.036256 GCAGGAACAGGGTGCCAT 59.964 61.111 0.00 0.00 32.48 4.40
4954 5958 4.724602 GAGGCGCTCGTCTGTGCA 62.725 66.667 7.64 0.00 44.39 4.57
5146 6152 3.876320 TGCGATCGATGATTTCATTGGAA 59.124 39.130 21.57 0.00 38.11 3.53
5191 6197 5.048852 GTCGTGTAGAACTCTGTTAACTCCT 60.049 44.000 7.22 0.00 0.00 3.69
5192 6198 5.180868 TCGTGTAGAACTCTGTTAACTCCTC 59.819 44.000 7.22 0.00 0.00 3.71
5193 6199 5.048921 CGTGTAGAACTCTGTTAACTCCTCA 60.049 44.000 7.22 0.00 0.00 3.86
5211 6217 2.804527 CTCATCCATGCTGTTATGTCCG 59.195 50.000 0.00 0.00 0.00 4.79
5233 6242 3.442625 GCCCCTTCCTTGTGTTGTAATAC 59.557 47.826 0.00 0.00 0.00 1.89
5275 6284 2.158957 ACGTTGCTAGGGATGTGTATGG 60.159 50.000 0.00 0.00 0.00 2.74
5276 6285 2.222027 GTTGCTAGGGATGTGTATGGC 58.778 52.381 0.00 0.00 0.00 4.40
5277 6286 0.764890 TGCTAGGGATGTGTATGGCC 59.235 55.000 0.00 0.00 0.00 5.36
5278 6287 0.036875 GCTAGGGATGTGTATGGCCC 59.963 60.000 0.00 0.00 41.00 5.80
5279 6288 4.860835 AGGGATGTGTATGGCCCT 57.139 55.556 0.00 0.00 45.97 5.19
5353 6362 2.997980 TGTGTGTGGTTGTGATGACTT 58.002 42.857 0.00 0.00 0.00 3.01
5354 6363 3.351740 TGTGTGTGGTTGTGATGACTTT 58.648 40.909 0.00 0.00 0.00 2.66
5355 6364 3.128415 TGTGTGTGGTTGTGATGACTTTG 59.872 43.478 0.00 0.00 0.00 2.77
5357 6366 2.687935 GTGTGGTTGTGATGACTTTGGT 59.312 45.455 0.00 0.00 0.00 3.67
5358 6367 2.687425 TGTGGTTGTGATGACTTTGGTG 59.313 45.455 0.00 0.00 0.00 4.17
5360 6369 2.092158 TGGTTGTGATGACTTTGGTGGA 60.092 45.455 0.00 0.00 0.00 4.02
5361 6370 2.554032 GGTTGTGATGACTTTGGTGGAG 59.446 50.000 0.00 0.00 0.00 3.86
5362 6371 3.214328 GTTGTGATGACTTTGGTGGAGT 58.786 45.455 0.00 0.00 0.00 3.85
5363 6372 3.576078 TGTGATGACTTTGGTGGAGTT 57.424 42.857 0.00 0.00 0.00 3.01
5364 6373 4.698201 TGTGATGACTTTGGTGGAGTTA 57.302 40.909 0.00 0.00 0.00 2.24
5365 6374 4.641396 TGTGATGACTTTGGTGGAGTTAG 58.359 43.478 0.00 0.00 0.00 2.34
5366 6375 3.437049 GTGATGACTTTGGTGGAGTTAGC 59.563 47.826 0.00 0.00 0.00 3.09
5368 6377 3.402628 TGACTTTGGTGGAGTTAGCTC 57.597 47.619 0.00 0.00 40.93 4.09
5369 6378 2.972713 TGACTTTGGTGGAGTTAGCTCT 59.027 45.455 6.54 0.00 41.38 4.09
5370 6379 4.157246 TGACTTTGGTGGAGTTAGCTCTA 58.843 43.478 6.54 0.00 41.38 2.43
5371 6380 4.220821 TGACTTTGGTGGAGTTAGCTCTAG 59.779 45.833 6.54 0.00 41.38 2.43
5375 6384 3.828875 GGTGGAGTTAGCTCTAGCATT 57.171 47.619 15.51 0.00 45.91 3.56
5376 6385 4.143986 GGTGGAGTTAGCTCTAGCATTT 57.856 45.455 15.51 0.00 45.91 2.32
5377 6386 3.873952 GGTGGAGTTAGCTCTAGCATTTG 59.126 47.826 15.51 0.00 45.91 2.32
5378 6387 3.873952 GTGGAGTTAGCTCTAGCATTTGG 59.126 47.826 6.54 0.00 45.16 3.28
5379 6388 3.519510 TGGAGTTAGCTCTAGCATTTGGT 59.480 43.478 6.54 0.00 45.16 3.67
5381 6390 4.944317 GGAGTTAGCTCTAGCATTTGGTTT 59.056 41.667 6.54 0.00 45.16 3.27
5386 6395 4.512484 AGCTCTAGCATTTGGTTTCTCTC 58.488 43.478 4.54 0.00 45.16 3.20
5387 6396 4.019860 AGCTCTAGCATTTGGTTTCTCTCA 60.020 41.667 4.54 0.00 45.16 3.27
5390 6399 5.869579 TCTAGCATTTGGTTTCTCTCACTT 58.130 37.500 0.00 0.00 0.00 3.16
5391 6400 6.299141 TCTAGCATTTGGTTTCTCTCACTTT 58.701 36.000 0.00 0.00 0.00 2.66
5392 6401 5.444663 AGCATTTGGTTTCTCTCACTTTC 57.555 39.130 0.00 0.00 0.00 2.62
5393 6402 5.136105 AGCATTTGGTTTCTCTCACTTTCT 58.864 37.500 0.00 0.00 0.00 2.52
5394 6403 6.299141 AGCATTTGGTTTCTCTCACTTTCTA 58.701 36.000 0.00 0.00 0.00 2.10
5396 6405 6.568653 GCATTTGGTTTCTCTCACTTTCTACC 60.569 42.308 0.00 0.00 0.00 3.18
5397 6406 4.618920 TGGTTTCTCTCACTTTCTACCC 57.381 45.455 0.00 0.00 0.00 3.69
5398 6407 3.971305 TGGTTTCTCTCACTTTCTACCCA 59.029 43.478 0.00 0.00 0.00 4.51
5399 6408 4.597507 TGGTTTCTCTCACTTTCTACCCAT 59.402 41.667 0.00 0.00 0.00 4.00
5402 6411 6.295688 GGTTTCTCTCACTTTCTACCCATGTA 60.296 42.308 0.00 0.00 0.00 2.29
5403 6412 6.928348 TTCTCTCACTTTCTACCCATGTAA 57.072 37.500 0.00 0.00 0.00 2.41
5404 6413 6.928348 TCTCTCACTTTCTACCCATGTAAA 57.072 37.500 0.00 0.00 0.00 2.01
5405 6414 7.496346 TCTCTCACTTTCTACCCATGTAAAT 57.504 36.000 0.00 0.00 0.00 1.40
5406 6415 7.918076 TCTCTCACTTTCTACCCATGTAAATT 58.082 34.615 0.00 0.00 0.00 1.82
5407 6416 8.041323 TCTCTCACTTTCTACCCATGTAAATTC 58.959 37.037 0.00 0.00 0.00 2.17
5408 6417 7.918076 TCTCACTTTCTACCCATGTAAATTCT 58.082 34.615 0.00 0.00 0.00 2.40
5409 6418 8.383175 TCTCACTTTCTACCCATGTAAATTCTT 58.617 33.333 0.00 0.00 0.00 2.52
5410 6419 8.561738 TCACTTTCTACCCATGTAAATTCTTC 57.438 34.615 0.00 0.00 0.00 2.87
5411 6420 7.610305 TCACTTTCTACCCATGTAAATTCTTCC 59.390 37.037 0.00 0.00 0.00 3.46
5412 6421 7.393234 CACTTTCTACCCATGTAAATTCTTCCA 59.607 37.037 0.00 0.00 0.00 3.53
5413 6422 7.393515 ACTTTCTACCCATGTAAATTCTTCCAC 59.606 37.037 0.00 0.00 0.00 4.02
5414 6423 5.424757 TCTACCCATGTAAATTCTTCCACG 58.575 41.667 0.00 0.00 0.00 4.94
5415 6424 3.352648 ACCCATGTAAATTCTTCCACGG 58.647 45.455 0.00 0.00 0.00 4.94
5416 6425 3.009695 ACCCATGTAAATTCTTCCACGGA 59.990 43.478 0.00 0.00 0.00 4.69
5417 6426 4.207165 CCCATGTAAATTCTTCCACGGAT 58.793 43.478 0.00 0.00 0.00 4.18
5418 6427 4.275936 CCCATGTAAATTCTTCCACGGATC 59.724 45.833 0.00 0.00 0.00 3.36
5419 6428 4.275936 CCATGTAAATTCTTCCACGGATCC 59.724 45.833 0.00 0.00 0.00 3.36
5420 6429 3.881220 TGTAAATTCTTCCACGGATCCC 58.119 45.455 6.06 0.00 0.00 3.85
5422 6431 3.669939 AAATTCTTCCACGGATCCCAT 57.330 42.857 6.06 0.00 0.00 4.00
5423 6432 4.788925 AAATTCTTCCACGGATCCCATA 57.211 40.909 6.06 0.00 0.00 2.74
5424 6433 4.788925 AATTCTTCCACGGATCCCATAA 57.211 40.909 6.06 0.00 0.00 1.90
5425 6434 5.324832 AATTCTTCCACGGATCCCATAAT 57.675 39.130 6.06 0.00 0.00 1.28
5426 6435 4.788925 TTCTTCCACGGATCCCATAATT 57.211 40.909 6.06 0.00 0.00 1.40
5427 6436 5.897851 TTCTTCCACGGATCCCATAATTA 57.102 39.130 6.06 0.00 0.00 1.40
5428 6437 6.448369 TTCTTCCACGGATCCCATAATTAT 57.552 37.500 6.06 0.00 0.00 1.28
5429 6438 6.049955 TCTTCCACGGATCCCATAATTATC 57.950 41.667 6.06 0.00 0.00 1.75
5431 6440 6.215431 TCTTCCACGGATCCCATAATTATCAT 59.785 38.462 6.06 0.00 0.00 2.45
5432 6441 5.989477 TCCACGGATCCCATAATTATCATC 58.011 41.667 6.06 0.00 0.00 2.92
5433 6442 5.104527 TCCACGGATCCCATAATTATCATCC 60.105 44.000 6.06 13.38 0.00 3.51
5436 6445 4.141711 CGGATCCCATAATTATCATCCGGT 60.142 45.833 25.85 3.29 45.90 5.28
5437 6446 5.629133 CGGATCCCATAATTATCATCCGGTT 60.629 44.000 25.85 0.00 45.90 4.44
5438 6447 5.823045 GGATCCCATAATTATCATCCGGTTC 59.177 44.000 0.00 4.47 0.00 3.62
5440 6449 3.374058 CCCATAATTATCATCCGGTTCGC 59.626 47.826 0.00 0.00 0.00 4.70
5441 6450 3.374058 CCATAATTATCATCCGGTTCGCC 59.626 47.826 0.00 0.00 0.00 5.54
5442 6451 2.930826 AATTATCATCCGGTTCGCCT 57.069 45.000 0.00 0.00 34.30 5.52
5444 6453 0.828022 TTATCATCCGGTTCGCCTGT 59.172 50.000 0.00 0.00 34.30 4.00
5445 6454 0.828022 TATCATCCGGTTCGCCTGTT 59.172 50.000 0.00 0.00 34.30 3.16
5446 6455 0.462047 ATCATCCGGTTCGCCTGTTC 60.462 55.000 0.00 0.00 34.30 3.18
5447 6456 1.079127 CATCCGGTTCGCCTGTTCT 60.079 57.895 0.00 0.00 34.30 3.01
5448 6457 0.673644 CATCCGGTTCGCCTGTTCTT 60.674 55.000 0.00 0.00 34.30 2.52
5449 6458 0.673644 ATCCGGTTCGCCTGTTCTTG 60.674 55.000 0.00 0.00 34.30 3.02
5450 6459 2.556287 CGGTTCGCCTGTTCTTGC 59.444 61.111 0.00 0.00 34.30 4.01
5451 6460 1.961277 CGGTTCGCCTGTTCTTGCT 60.961 57.895 0.00 0.00 34.30 3.91
5452 6461 1.869690 GGTTCGCCTGTTCTTGCTC 59.130 57.895 0.00 0.00 0.00 4.26
5453 6462 1.493311 GTTCGCCTGTTCTTGCTCG 59.507 57.895 0.00 0.00 0.00 5.03
5454 6463 1.069090 TTCGCCTGTTCTTGCTCGT 59.931 52.632 0.00 0.00 0.00 4.18
5455 6464 0.944311 TTCGCCTGTTCTTGCTCGTC 60.944 55.000 0.00 0.00 0.00 4.20
5456 6465 2.383527 CGCCTGTTCTTGCTCGTCC 61.384 63.158 0.00 0.00 0.00 4.79
5457 6466 1.004440 GCCTGTTCTTGCTCGTCCT 60.004 57.895 0.00 0.00 0.00 3.85
5458 6467 1.294659 GCCTGTTCTTGCTCGTCCTG 61.295 60.000 0.00 0.00 0.00 3.86
5459 6468 1.294659 CCTGTTCTTGCTCGTCCTGC 61.295 60.000 0.00 0.00 0.00 4.85
5460 6469 0.320247 CTGTTCTTGCTCGTCCTGCT 60.320 55.000 0.00 0.00 0.00 4.24
5461 6470 0.319900 TGTTCTTGCTCGTCCTGCTC 60.320 55.000 0.00 0.00 0.00 4.26
5462 6471 1.016653 GTTCTTGCTCGTCCTGCTCC 61.017 60.000 0.00 0.00 0.00 4.70
5463 6472 2.492449 TTCTTGCTCGTCCTGCTCCG 62.492 60.000 0.00 0.00 0.00 4.63
5464 6473 3.997064 CTTGCTCGTCCTGCTCCGG 62.997 68.421 0.00 0.00 0.00 5.14
5467 6476 4.200283 CTCGTCCTGCTCCGGCTC 62.200 72.222 0.00 0.00 39.59 4.70
5468 6477 4.742649 TCGTCCTGCTCCGGCTCT 62.743 66.667 0.00 0.00 39.59 4.09
5469 6478 3.764466 CGTCCTGCTCCGGCTCTT 61.764 66.667 0.00 0.00 39.59 2.85
5470 6479 2.125350 GTCCTGCTCCGGCTCTTG 60.125 66.667 0.00 0.00 39.59 3.02
5471 6480 3.393970 TCCTGCTCCGGCTCTTGG 61.394 66.667 0.00 0.00 39.59 3.61
5472 6481 3.393970 CCTGCTCCGGCTCTTGGA 61.394 66.667 0.00 0.00 39.59 3.53
5660 6669 2.859165 CCTTCTACAACAAGGCCTCA 57.141 50.000 5.23 0.00 34.21 3.86
5661 6670 2.704572 CCTTCTACAACAAGGCCTCAG 58.295 52.381 5.23 4.30 34.21 3.35
5662 6671 2.616510 CCTTCTACAACAAGGCCTCAGG 60.617 54.545 5.23 0.68 34.21 3.86
5663 6672 1.729586 TCTACAACAAGGCCTCAGGT 58.270 50.000 5.23 1.47 0.00 4.00
5664 6673 1.623811 TCTACAACAAGGCCTCAGGTC 59.376 52.381 5.23 0.00 0.00 3.85
5698 6707 5.009210 GGCCTTCTTGTTTATGTGTGTTGTA 59.991 40.000 0.00 0.00 0.00 2.41
5703 6712 9.169468 CTTCTTGTTTATGTGTGTTGTACATTC 57.831 33.333 0.00 0.00 42.24 2.67
5707 6716 7.866729 TGTTTATGTGTGTTGTACATTCGATT 58.133 30.769 0.00 0.00 42.24 3.34
5708 6717 8.346300 TGTTTATGTGTGTTGTACATTCGATTT 58.654 29.630 0.00 0.00 42.24 2.17
5710 6719 8.942669 TTATGTGTGTTGTACATTCGATTTTC 57.057 30.769 0.00 0.00 42.24 2.29
5712 6721 5.297029 TGTGTGTTGTACATTCGATTTTCCA 59.703 36.000 0.00 0.00 42.24 3.53
5715 6724 6.205658 TGTGTTGTACATTCGATTTTCCATCA 59.794 34.615 0.00 0.00 33.42 3.07
5734 6743 3.502572 GCTGATGCCCTCCGTTTC 58.497 61.111 0.00 0.00 0.00 2.78
5735 6744 1.377202 GCTGATGCCCTCCGTTTCA 60.377 57.895 0.00 0.00 0.00 2.69
5736 6745 0.960364 GCTGATGCCCTCCGTTTCAA 60.960 55.000 0.00 0.00 0.00 2.69
5737 6746 1.755179 CTGATGCCCTCCGTTTCAAT 58.245 50.000 0.00 0.00 0.00 2.57
5738 6747 2.094675 CTGATGCCCTCCGTTTCAATT 58.905 47.619 0.00 0.00 0.00 2.32
5739 6748 2.493278 CTGATGCCCTCCGTTTCAATTT 59.507 45.455 0.00 0.00 0.00 1.82
5740 6749 2.230992 TGATGCCCTCCGTTTCAATTTG 59.769 45.455 0.00 0.00 0.00 2.32
5741 6750 1.988293 TGCCCTCCGTTTCAATTTGA 58.012 45.000 0.00 0.00 0.00 2.69
5743 6752 2.035321 TGCCCTCCGTTTCAATTTGAAC 59.965 45.455 11.30 6.51 35.89 3.18
5744 6753 2.296190 GCCCTCCGTTTCAATTTGAACT 59.704 45.455 11.30 0.00 35.89 3.01
5747 6756 4.537015 CCTCCGTTTCAATTTGAACTGTC 58.463 43.478 11.30 2.94 35.89 3.51
5748 6757 4.036262 CCTCCGTTTCAATTTGAACTGTCA 59.964 41.667 11.30 0.00 35.89 3.58
5749 6758 5.449862 CCTCCGTTTCAATTTGAACTGTCAA 60.450 40.000 11.30 0.00 42.12 3.18
5775 6784 9.819267 AAACGTCTTATATTTAGAAAGAGAGGG 57.181 33.333 0.00 0.00 30.22 4.30
5797 6820 6.482524 GGGAGTATTACCCTAATTCAATCCC 58.517 44.000 0.00 0.00 43.65 3.85
5852 6875 2.110213 GGTCACGGCTGAACACCA 59.890 61.111 0.00 0.00 33.81 4.17
5857 6880 1.070914 TCACGGCTGAACACCACATTA 59.929 47.619 0.00 0.00 0.00 1.90
5858 6881 1.464608 CACGGCTGAACACCACATTAG 59.535 52.381 0.00 0.00 0.00 1.73
5859 6882 1.071699 ACGGCTGAACACCACATTAGT 59.928 47.619 0.00 0.00 0.00 2.24
5860 6883 2.151202 CGGCTGAACACCACATTAGTT 58.849 47.619 0.00 0.00 0.00 2.24
5861 6884 3.244284 ACGGCTGAACACCACATTAGTTA 60.244 43.478 0.00 0.00 0.00 2.24
5862 6885 3.370978 CGGCTGAACACCACATTAGTTAG 59.629 47.826 0.00 0.00 0.00 2.34
5863 6886 4.575885 GGCTGAACACCACATTAGTTAGA 58.424 43.478 0.00 0.00 0.00 2.10
5866 6889 6.371389 GCTGAACACCACATTAGTTAGAAAC 58.629 40.000 0.00 0.00 0.00 2.78
5867 6890 6.204882 GCTGAACACCACATTAGTTAGAAACT 59.795 38.462 0.00 0.00 45.40 2.66
5868 6891 7.490962 TGAACACCACATTAGTTAGAAACTG 57.509 36.000 2.59 0.00 42.84 3.16
5869 6892 5.941948 ACACCACATTAGTTAGAAACTGC 57.058 39.130 2.59 0.00 42.84 4.40
5870 6893 5.621193 ACACCACATTAGTTAGAAACTGCT 58.379 37.500 2.59 0.00 42.84 4.24
5872 6895 6.649557 ACACCACATTAGTTAGAAACTGCTAC 59.350 38.462 2.59 0.00 42.84 3.58
5873 6896 6.649141 CACCACATTAGTTAGAAACTGCTACA 59.351 38.462 2.59 0.00 42.84 2.74
5874 6897 6.874134 ACCACATTAGTTAGAAACTGCTACAG 59.126 38.462 2.59 0.00 42.84 2.74
5876 6899 7.602644 CCACATTAGTTAGAAACTGCTACAGAA 59.397 37.037 0.78 0.00 42.84 3.02
5877 6900 8.651588 CACATTAGTTAGAAACTGCTACAGAAG 58.348 37.037 0.78 0.00 42.84 2.85
5881 6906 7.291411 AGTTAGAAACTGCTACAGAAGAGAA 57.709 36.000 0.78 0.00 41.01 2.87
5882 6907 7.375053 AGTTAGAAACTGCTACAGAAGAGAAG 58.625 38.462 0.78 0.00 41.01 2.85
5884 6909 5.778862 AGAAACTGCTACAGAAGAGAAGAC 58.221 41.667 0.78 0.00 35.18 3.01
5889 6914 4.657013 TGCTACAGAAGAGAAGACAGAGA 58.343 43.478 0.00 0.00 0.00 3.10
5892 6917 4.963276 ACAGAAGAGAAGACAGAGATCG 57.037 45.455 0.00 0.00 0.00 3.69
5906 6931 0.178068 AGATCGCTATGTTTGGCCGT 59.822 50.000 0.00 0.00 0.00 5.68
5909 6934 2.319136 TCGCTATGTTTGGCCGTAAT 57.681 45.000 0.00 0.00 0.00 1.89
5912 6937 3.991773 TCGCTATGTTTGGCCGTAATATC 59.008 43.478 0.00 0.00 0.00 1.63
5915 6940 3.586470 ATGTTTGGCCGTAATATCCCA 57.414 42.857 0.00 0.00 0.00 4.37
5917 6942 2.506231 TGTTTGGCCGTAATATCCCAGA 59.494 45.455 0.00 0.00 0.00 3.86
5940 6965 1.623311 TGTTTAGCCTGCACTGCTAGA 59.377 47.619 11.78 6.50 41.94 2.43
5941 6966 2.038426 TGTTTAGCCTGCACTGCTAGAA 59.962 45.455 11.78 7.99 41.94 2.10
5942 6967 2.386661 TTAGCCTGCACTGCTAGAAC 57.613 50.000 11.78 0.00 41.94 3.01
5943 6968 0.537188 TAGCCTGCACTGCTAGAACC 59.463 55.000 8.72 0.00 40.23 3.62
5944 6969 1.746991 GCCTGCACTGCTAGAACCC 60.747 63.158 1.98 0.00 0.00 4.11
5945 6970 1.679311 CCTGCACTGCTAGAACCCA 59.321 57.895 1.98 0.00 0.00 4.51
5946 6971 0.254178 CCTGCACTGCTAGAACCCAT 59.746 55.000 1.98 0.00 0.00 4.00
5947 6972 1.376543 CTGCACTGCTAGAACCCATG 58.623 55.000 1.98 0.00 0.00 3.66
5948 6973 0.035152 TGCACTGCTAGAACCCATGG 60.035 55.000 4.14 4.14 0.00 3.66
5949 6974 1.379642 GCACTGCTAGAACCCATGGC 61.380 60.000 6.09 0.00 0.00 4.40
5950 6975 0.254178 CACTGCTAGAACCCATGGCT 59.746 55.000 6.09 0.17 0.00 4.75
5951 6976 1.486310 CACTGCTAGAACCCATGGCTA 59.514 52.381 6.09 1.55 0.00 3.93
5952 6977 1.486726 ACTGCTAGAACCCATGGCTAC 59.513 52.381 6.09 0.00 0.00 3.58
5953 6978 1.765314 CTGCTAGAACCCATGGCTACT 59.235 52.381 6.09 7.11 0.00 2.57
5954 6979 1.486310 TGCTAGAACCCATGGCTACTG 59.514 52.381 6.09 0.00 0.00 2.74
5955 6980 1.486726 GCTAGAACCCATGGCTACTGT 59.513 52.381 6.09 0.00 0.00 3.55
5956 6981 2.698797 GCTAGAACCCATGGCTACTGTA 59.301 50.000 6.09 0.00 0.00 2.74
5957 6982 3.243907 GCTAGAACCCATGGCTACTGTAG 60.244 52.174 6.09 10.48 0.00 2.74
5970 6995 4.103365 CTACTGTAGCTTCACTGTCCAG 57.897 50.000 1.26 0.00 33.32 3.86
5971 6996 1.001406 ACTGTAGCTTCACTGTCCAGC 59.999 52.381 0.00 0.35 0.00 4.85
5972 6997 1.001293 CTGTAGCTTCACTGTCCAGCA 59.999 52.381 9.72 0.00 35.88 4.41
5973 6998 1.416030 TGTAGCTTCACTGTCCAGCAA 59.584 47.619 9.72 0.00 35.88 3.91
5974 6999 2.038952 TGTAGCTTCACTGTCCAGCAAT 59.961 45.455 9.72 0.00 35.88 3.56
5975 7000 3.260632 TGTAGCTTCACTGTCCAGCAATA 59.739 43.478 9.72 0.00 35.88 1.90
5976 7001 2.704572 AGCTTCACTGTCCAGCAATAC 58.295 47.619 9.72 0.00 35.88 1.89
5977 7002 1.740025 GCTTCACTGTCCAGCAATACC 59.260 52.381 3.41 0.00 33.45 2.73
5978 7003 2.875672 GCTTCACTGTCCAGCAATACCA 60.876 50.000 3.41 0.00 33.45 3.25
5979 7004 3.614092 CTTCACTGTCCAGCAATACCAT 58.386 45.455 0.00 0.00 0.00 3.55
5980 7005 3.266510 TCACTGTCCAGCAATACCATC 57.733 47.619 0.00 0.00 0.00 3.51
5981 7006 2.571202 TCACTGTCCAGCAATACCATCA 59.429 45.455 0.00 0.00 0.00 3.07
5982 7007 3.200605 TCACTGTCCAGCAATACCATCAT 59.799 43.478 0.00 0.00 0.00 2.45
5983 7008 4.408596 TCACTGTCCAGCAATACCATCATA 59.591 41.667 0.00 0.00 0.00 2.15
5984 7009 4.512944 CACTGTCCAGCAATACCATCATAC 59.487 45.833 0.00 0.00 0.00 2.39
5985 7010 4.410228 ACTGTCCAGCAATACCATCATACT 59.590 41.667 0.00 0.00 0.00 2.12
5986 7011 5.602561 ACTGTCCAGCAATACCATCATACTA 59.397 40.000 0.00 0.00 0.00 1.82
5987 7012 6.099701 ACTGTCCAGCAATACCATCATACTAA 59.900 38.462 0.00 0.00 0.00 2.24
5988 7013 6.288294 TGTCCAGCAATACCATCATACTAAC 58.712 40.000 0.00 0.00 0.00 2.34
5989 7014 6.099701 TGTCCAGCAATACCATCATACTAACT 59.900 38.462 0.00 0.00 0.00 2.24
5990 7015 6.647067 GTCCAGCAATACCATCATACTAACTC 59.353 42.308 0.00 0.00 0.00 3.01
5991 7016 6.326323 TCCAGCAATACCATCATACTAACTCA 59.674 38.462 0.00 0.00 0.00 3.41
5992 7017 6.425114 CCAGCAATACCATCATACTAACTCAC 59.575 42.308 0.00 0.00 0.00 3.51
5993 7018 6.986231 CAGCAATACCATCATACTAACTCACA 59.014 38.462 0.00 0.00 0.00 3.58
5994 7019 7.495606 CAGCAATACCATCATACTAACTCACAA 59.504 37.037 0.00 0.00 0.00 3.33
5995 7020 8.046708 AGCAATACCATCATACTAACTCACAAA 58.953 33.333 0.00 0.00 0.00 2.83
5996 7021 8.673711 GCAATACCATCATACTAACTCACAAAA 58.326 33.333 0.00 0.00 0.00 2.44
6000 7025 8.324163 ACCATCATACTAACTCACAAAAGAAC 57.676 34.615 0.00 0.00 0.00 3.01
6001 7026 7.936847 ACCATCATACTAACTCACAAAAGAACA 59.063 33.333 0.00 0.00 0.00 3.18
6002 7027 8.783093 CCATCATACTAACTCACAAAAGAACAA 58.217 33.333 0.00 0.00 0.00 2.83
6005 7030 9.778741 TCATACTAACTCACAAAAGAACAATCT 57.221 29.630 0.00 0.00 37.57 2.40
6008 7033 8.506168 ACTAACTCACAAAAGAACAATCTTCA 57.494 30.769 0.00 0.00 45.19 3.02
6009 7034 8.398665 ACTAACTCACAAAAGAACAATCTTCAC 58.601 33.333 0.00 0.00 45.19 3.18
6010 7035 7.396540 AACTCACAAAAGAACAATCTTCACT 57.603 32.000 0.00 0.00 45.19 3.41
6011 7036 8.506168 AACTCACAAAAGAACAATCTTCACTA 57.494 30.769 0.00 0.00 45.19 2.74
6012 7037 8.682936 ACTCACAAAAGAACAATCTTCACTAT 57.317 30.769 0.00 0.00 45.19 2.12
6013 7038 8.778358 ACTCACAAAAGAACAATCTTCACTATC 58.222 33.333 0.00 0.00 45.19 2.08
6014 7039 8.099364 TCACAAAAGAACAATCTTCACTATCC 57.901 34.615 0.00 0.00 45.19 2.59
6015 7040 7.719193 TCACAAAAGAACAATCTTCACTATCCA 59.281 33.333 0.00 0.00 45.19 3.41
6016 7041 8.352201 CACAAAAGAACAATCTTCACTATCCAA 58.648 33.333 0.00 0.00 45.19 3.53
6017 7042 9.082313 ACAAAAGAACAATCTTCACTATCCAAT 57.918 29.630 0.00 0.00 45.19 3.16
6024 7049 9.927081 AACAATCTTCACTATCCAATATTTCCT 57.073 29.630 0.00 0.00 0.00 3.36
6025 7050 9.927081 ACAATCTTCACTATCCAATATTTCCTT 57.073 29.630 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.568794 GTTTACAGAGGAAGAACTTAGCAATTT 58.431 33.333 0.00 0.00 0.00 1.82
3 4 7.454225 AGTTTACAGAGGAAGAACTTAGCAAT 58.546 34.615 0.00 0.00 0.00 3.56
4 5 6.827727 AGTTTACAGAGGAAGAACTTAGCAA 58.172 36.000 0.00 0.00 0.00 3.91
5 6 6.420913 AGTTTACAGAGGAAGAACTTAGCA 57.579 37.500 0.00 0.00 0.00 3.49
14 15 9.400638 CGCTCTTATATTAGTTTACAGAGGAAG 57.599 37.037 0.00 0.00 0.00 3.46
15 16 8.910944 ACGCTCTTATATTAGTTTACAGAGGAA 58.089 33.333 0.00 0.00 0.00 3.36
16 17 8.461249 ACGCTCTTATATTAGTTTACAGAGGA 57.539 34.615 0.00 0.00 0.00 3.71
17 18 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
50 51 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
51 52 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
52 53 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
53 54 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
54 55 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
65 66 8.657712 ACTTAATTGTTACTCCCTCTGTAAACT 58.342 33.333 0.00 0.00 32.58 2.66
66 67 8.843885 ACTTAATTGTTACTCCCTCTGTAAAC 57.156 34.615 0.00 0.00 32.58 2.01
90 91 8.718102 TGTTGGAGATGCTCTTAAGTTAATAC 57.282 34.615 1.63 0.00 0.00 1.89
91 92 9.162764 GTTGTTGGAGATGCTCTTAAGTTAATA 57.837 33.333 1.63 0.00 0.00 0.98
92 93 7.665559 TGTTGTTGGAGATGCTCTTAAGTTAAT 59.334 33.333 1.63 0.00 0.00 1.40
94 95 6.530120 TGTTGTTGGAGATGCTCTTAAGTTA 58.470 36.000 1.63 0.00 0.00 2.24
95 96 5.376625 TGTTGTTGGAGATGCTCTTAAGTT 58.623 37.500 1.63 0.00 0.00 2.66
126 131 7.603024 GCTATACCTAATCTTTAGCAATTCGGT 59.397 37.037 0.00 0.00 35.70 4.69
128 133 8.534333 TGCTATACCTAATCTTTAGCAATTCG 57.466 34.615 0.75 0.00 41.51 3.34
137 142 9.427821 TCTCTCTTCTTGCTATACCTAATCTTT 57.572 33.333 0.00 0.00 0.00 2.52
144 149 7.010160 AGCTTATCTCTCTTCTTGCTATACCT 58.990 38.462 0.00 0.00 0.00 3.08
157 162 6.370166 GTGTGTTTGCTAAAGCTTATCTCTCT 59.630 38.462 0.00 0.00 42.66 3.10
216 221 8.587608 TGTCATTGAGAGGATTGCTAAAATTTT 58.412 29.630 8.75 8.75 0.00 1.82
217 222 8.031277 GTGTCATTGAGAGGATTGCTAAAATTT 58.969 33.333 0.00 0.00 0.00 1.82
218 223 7.542025 GTGTCATTGAGAGGATTGCTAAAATT 58.458 34.615 0.00 0.00 0.00 1.82
219 224 6.183360 CGTGTCATTGAGAGGATTGCTAAAAT 60.183 38.462 0.00 0.00 0.00 1.82
220 225 5.122239 CGTGTCATTGAGAGGATTGCTAAAA 59.878 40.000 0.00 0.00 0.00 1.52
221 226 4.631377 CGTGTCATTGAGAGGATTGCTAAA 59.369 41.667 0.00 0.00 0.00 1.85
261 266 2.748058 AAATTCCTGCTGACCCGCGT 62.748 55.000 4.92 0.00 0.00 6.01
263 268 1.017387 CTAAATTCCTGCTGACCCGC 58.983 55.000 0.00 0.00 0.00 6.13
264 269 1.668419 CCTAAATTCCTGCTGACCCG 58.332 55.000 0.00 0.00 0.00 5.28
267 272 2.058593 CCCCCTAAATTCCTGCTGAC 57.941 55.000 0.00 0.00 0.00 3.51
283 288 4.796495 GTGGACCACATCGCCCCC 62.796 72.222 20.14 0.00 34.08 5.40
284 289 3.268103 AAGTGGACCACATCGCCCC 62.268 63.158 26.30 0.00 36.74 5.80
285 290 2.040544 CAAGTGGACCACATCGCCC 61.041 63.158 26.30 0.00 36.74 6.13
286 291 1.298859 GACAAGTGGACCACATCGCC 61.299 60.000 26.30 7.71 36.74 5.54
287 292 0.602638 TGACAAGTGGACCACATCGC 60.603 55.000 26.30 12.97 36.74 4.58
288 293 1.877637 TTGACAAGTGGACCACATCG 58.122 50.000 26.30 15.58 36.74 3.84
289 294 2.489329 CCATTGACAAGTGGACCACATC 59.511 50.000 26.30 19.22 37.72 3.06
290 295 2.108075 TCCATTGACAAGTGGACCACAT 59.892 45.455 26.30 12.38 39.51 3.21
291 296 1.492599 TCCATTGACAAGTGGACCACA 59.507 47.619 26.30 4.91 39.51 4.17
292 297 2.270352 TCCATTGACAAGTGGACCAC 57.730 50.000 17.43 17.43 39.51 4.16
301 424 4.222336 ACATCCCTTTGTTCCATTGACAA 58.778 39.130 0.00 0.00 35.36 3.18
304 427 4.569653 CCCTACATCCCTTTGTTCCATTGA 60.570 45.833 0.00 0.00 0.00 2.57
310 433 2.356844 GGTCCCCTACATCCCTTTGTTC 60.357 54.545 0.00 0.00 0.00 3.18
363 486 9.203421 ACTTATATTTGCAAAGTTAAAAGGCAC 57.797 29.630 18.19 0.00 33.66 5.01
372 495 7.393234 TGCTCCTACACTTATATTTGCAAAGTT 59.607 33.333 18.19 9.68 31.21 2.66
374 497 7.320443 TGCTCCTACACTTATATTTGCAAAG 57.680 36.000 18.19 5.77 0.00 2.77
387 513 5.059833 GCTTGCTATATTTGCTCCTACACT 58.940 41.667 2.81 0.00 0.00 3.55
388 514 5.059833 AGCTTGCTATATTTGCTCCTACAC 58.940 41.667 0.00 0.00 0.00 2.90
389 515 5.296151 AGCTTGCTATATTTGCTCCTACA 57.704 39.130 0.00 0.00 0.00 2.74
390 516 6.038714 ACAAAGCTTGCTATATTTGCTCCTAC 59.961 38.462 0.00 0.00 36.36 3.18
391 517 6.122277 ACAAAGCTTGCTATATTTGCTCCTA 58.878 36.000 0.00 0.00 36.36 2.94
392 518 4.952335 ACAAAGCTTGCTATATTTGCTCCT 59.048 37.500 0.00 0.00 36.36 3.69
421 556 9.744468 GTTAGGATTGCTAAAAACTGAAGAAAA 57.256 29.630 0.00 0.00 0.00 2.29
491 626 9.859427 CACCATAACAAAATGTCAATTCTACAT 57.141 29.630 0.00 0.00 39.22 2.29
492 627 9.072375 TCACCATAACAAAATGTCAATTCTACA 57.928 29.630 0.00 0.00 0.00 2.74
496 631 8.487176 GTTGTCACCATAACAAAATGTCAATTC 58.513 33.333 0.00 0.00 38.29 2.17
515 650 0.865769 CTGTTAGGTGCCGTTGTCAC 59.134 55.000 0.00 0.00 0.00 3.67
529 664 2.038557 GGTCTTTCTCTGGCACCTGTTA 59.961 50.000 0.00 0.00 0.00 2.41
531 666 0.398318 GGTCTTTCTCTGGCACCTGT 59.602 55.000 0.00 0.00 0.00 4.00
543 678 2.356069 GCGGAAGATCATTGGGTCTTTC 59.644 50.000 0.00 4.61 34.97 2.62
546 681 0.179073 CGCGGAAGATCATTGGGTCT 60.179 55.000 0.00 0.00 0.00 3.85
547 682 1.160329 CCGCGGAAGATCATTGGGTC 61.160 60.000 24.07 0.00 0.00 4.46
551 686 1.893808 CCCCCGCGGAAGATCATTG 60.894 63.158 30.73 5.91 0.00 2.82
553 688 1.458777 TACCCCCGCGGAAGATCAT 60.459 57.895 30.73 6.99 34.64 2.45
554 689 2.042741 TACCCCCGCGGAAGATCA 60.043 61.111 30.73 3.00 34.64 2.92
564 699 0.668401 GTGACGTGTTTCTACCCCCG 60.668 60.000 0.00 0.00 0.00 5.73
572 707 2.686558 ACATGCATGTGACGTGTTTC 57.313 45.000 30.92 0.00 40.03 2.78
579 714 6.475076 TGTTTTCTTAACAACATGCATGTGAC 59.525 34.615 31.98 16.14 41.61 3.67
622 757 7.256494 TGGATATGGATTGCCTTTTCTTTTT 57.744 32.000 0.00 0.00 34.31 1.94
627 762 4.082571 CGGATGGATATGGATTGCCTTTTC 60.083 45.833 0.00 0.00 34.31 2.29
628 763 3.828451 CGGATGGATATGGATTGCCTTTT 59.172 43.478 0.00 0.00 34.31 2.27
629 764 3.181429 ACGGATGGATATGGATTGCCTTT 60.181 43.478 0.00 0.00 34.31 3.11
632 767 2.086869 CACGGATGGATATGGATTGCC 58.913 52.381 0.00 0.00 0.00 4.52
633 768 1.470098 GCACGGATGGATATGGATTGC 59.530 52.381 0.00 0.00 0.00 3.56
634 769 2.745821 CTGCACGGATGGATATGGATTG 59.254 50.000 0.00 0.00 0.00 2.67
635 770 2.639347 TCTGCACGGATGGATATGGATT 59.361 45.455 0.00 0.00 0.00 3.01
636 771 2.259917 TCTGCACGGATGGATATGGAT 58.740 47.619 0.00 0.00 0.00 3.41
637 772 1.715785 TCTGCACGGATGGATATGGA 58.284 50.000 0.00 0.00 0.00 3.41
638 773 2.775911 ATCTGCACGGATGGATATGG 57.224 50.000 0.00 0.00 0.00 2.74
639 774 6.373779 GTTTTAATCTGCACGGATGGATATG 58.626 40.000 0.00 0.00 0.00 1.78
640 775 5.473504 GGTTTTAATCTGCACGGATGGATAT 59.526 40.000 0.00 0.00 0.00 1.63
641 776 4.819630 GGTTTTAATCTGCACGGATGGATA 59.180 41.667 0.00 0.00 0.00 2.59
642 777 3.632145 GGTTTTAATCTGCACGGATGGAT 59.368 43.478 0.00 0.00 0.00 3.41
669 804 1.029947 CATACACCACGAAAGCCCCC 61.030 60.000 0.00 0.00 0.00 5.40
670 805 0.322187 ACATACACCACGAAAGCCCC 60.322 55.000 0.00 0.00 0.00 5.80
671 806 0.802494 CACATACACCACGAAAGCCC 59.198 55.000 0.00 0.00 0.00 5.19
718 968 3.053170 GGAGGGTTGGGCTTTATTAGGAA 60.053 47.826 0.00 0.00 0.00 3.36
720 970 2.514160 AGGAGGGTTGGGCTTTATTAGG 59.486 50.000 0.00 0.00 0.00 2.69
730 980 1.412343 CACAACAAAAGGAGGGTTGGG 59.588 52.381 8.40 0.44 44.61 4.12
748 998 0.657840 CAAGCTATACCGCCAAGCAC 59.342 55.000 0.00 0.00 38.75 4.40
829 1107 1.621301 CGTTGCTCGAGCTTGGTGAG 61.621 60.000 35.27 16.75 42.86 3.51
841 1119 0.161870 GAGACTGTTTCGCGTTGCTC 59.838 55.000 5.77 1.24 0.00 4.26
858 1136 1.923204 CGTTTCTCTGCATTCTCGGAG 59.077 52.381 0.00 0.00 40.08 4.63
867 1145 1.019278 GGCGGAATCGTTTCTCTGCA 61.019 55.000 15.31 0.00 38.89 4.41
950 1239 2.432300 CGGGGAGGCAGTTATCGGT 61.432 63.158 0.00 0.00 0.00 4.69
951 1240 2.421739 CGGGGAGGCAGTTATCGG 59.578 66.667 0.00 0.00 0.00 4.18
1061 1391 1.338389 GGAGGCGTTTGTAGCAGGTTA 60.338 52.381 0.00 0.00 36.08 2.85
1062 1392 0.605589 GGAGGCGTTTGTAGCAGGTT 60.606 55.000 0.00 0.00 36.08 3.50
1477 1808 4.107051 CCAAGAAGCGCAAGGCCG 62.107 66.667 11.47 0.00 45.17 6.13
1478 1809 3.752339 CCCAAGAAGCGCAAGGCC 61.752 66.667 11.47 0.00 45.17 5.19
1479 1810 4.426112 GCCCAAGAAGCGCAAGGC 62.426 66.667 11.47 8.45 44.05 4.35
1480 1811 3.752339 GGCCCAAGAAGCGCAAGG 61.752 66.667 11.47 3.16 38.28 3.61
1481 1812 4.107051 CGGCCCAAGAAGCGCAAG 62.107 66.667 11.47 0.00 43.44 4.01
1482 1813 4.634703 TCGGCCCAAGAAGCGCAA 62.635 61.111 11.47 0.00 0.00 4.85
1511 1848 4.688966 GAGATGATCGGGGGCGCC 62.689 72.222 21.18 21.18 0.00 6.53
1512 1849 4.688966 GGAGATGATCGGGGGCGC 62.689 72.222 0.00 0.00 0.00 6.53
1516 1853 0.902516 GGAGGAGGAGATGATCGGGG 60.903 65.000 0.00 0.00 0.00 5.73
1528 1871 1.152567 AGAGCGAGATGGGAGGAGG 60.153 63.158 0.00 0.00 0.00 4.30
1530 1873 0.467106 CTGAGAGCGAGATGGGAGGA 60.467 60.000 0.00 0.00 0.00 3.71
1531 1874 0.754957 ACTGAGAGCGAGATGGGAGG 60.755 60.000 0.00 0.00 0.00 4.30
1532 1875 1.974265 TACTGAGAGCGAGATGGGAG 58.026 55.000 0.00 0.00 0.00 4.30
1533 1876 2.302260 CTTACTGAGAGCGAGATGGGA 58.698 52.381 0.00 0.00 0.00 4.37
1537 1880 4.204012 AGCTTACTTACTGAGAGCGAGAT 58.796 43.478 0.00 0.00 38.34 2.75
1548 1891 5.768662 GGAAAGTTTTGGGAGCTTACTTACT 59.231 40.000 0.00 0.00 0.00 2.24
1582 1926 1.375523 CGGTTGAGTCGGGAAAGGG 60.376 63.158 0.00 0.00 0.00 3.95
1632 1984 1.511768 GACGAGGAGGAACGGGAAG 59.488 63.158 0.00 0.00 0.00 3.46
1699 2051 1.398390 CCCAGAAATTTCCGAAGCTCG 59.602 52.381 14.61 0.00 40.07 5.03
1704 2056 4.502431 GGAAAAAGCCCAGAAATTTCCGAA 60.502 41.667 14.61 0.00 39.54 4.30
1706 2058 3.325870 GGAAAAAGCCCAGAAATTTCCG 58.674 45.455 14.61 4.42 39.54 4.30
1707 2059 4.623932 AGGAAAAAGCCCAGAAATTTCC 57.376 40.909 14.61 7.35 45.96 3.13
1764 2122 3.116531 CGAGCGAACGAAACCCCC 61.117 66.667 0.00 0.00 35.09 5.40
1826 2185 2.728922 GTAGCGAACGAACCCTAGATG 58.271 52.381 0.00 0.00 0.00 2.90
1860 2219 3.976015 GAGAATCCCCATGGGTAAAACA 58.024 45.455 29.33 6.16 44.74 2.83
1899 2258 1.155889 CATGGCTCGCACAACAGTAA 58.844 50.000 0.00 0.00 0.00 2.24
1901 2260 1.968017 CCATGGCTCGCACAACAGT 60.968 57.895 0.00 0.00 0.00 3.55
1902 2261 2.872557 CCATGGCTCGCACAACAG 59.127 61.111 0.00 0.00 0.00 3.16
1903 2262 3.364441 GCCATGGCTCGCACAACA 61.364 61.111 29.98 0.00 38.26 3.33
1929 2331 2.711009 ACATTCCACAGGAAGAACTGGA 59.289 45.455 4.65 0.00 45.48 3.86
1980 2383 4.868734 CGGAATAATAAATCTCGCCTACCC 59.131 45.833 0.00 0.00 0.00 3.69
1981 2384 4.868734 CCGGAATAATAAATCTCGCCTACC 59.131 45.833 0.00 0.00 0.00 3.18
1982 2385 4.329256 GCCGGAATAATAAATCTCGCCTAC 59.671 45.833 5.05 0.00 0.00 3.18
2036 2439 1.203928 CACGAATCGAGCTGATGTCC 58.796 55.000 10.55 0.00 37.39 4.02
2039 2442 0.179100 ACCCACGAATCGAGCTGATG 60.179 55.000 10.55 0.00 37.39 3.07
2092 2495 4.215613 GCTTACGGATCAAAAGAAACAGGT 59.784 41.667 0.00 0.00 0.00 4.00
2100 2511 5.757886 TCACAAAAGCTTACGGATCAAAAG 58.242 37.500 0.00 0.00 0.00 2.27
2132 2543 3.823873 TGAAAATTTATGGCTCCACGTGT 59.176 39.130 15.65 0.00 0.00 4.49
2292 2704 5.506317 CCAGAGAAGTTTGTTCATCCACAAC 60.506 44.000 0.00 0.00 36.36 3.32
2397 2938 1.377229 TGGGAAACGACACCCCATC 59.623 57.895 11.49 0.00 44.67 3.51
2538 3157 9.372189 AGAAATCATAGCCTTTAATATGCCTTT 57.628 29.630 0.00 0.00 30.89 3.11
2565 3276 8.402472 CCACTGTCAAAAGAAGTAATACACAAA 58.598 33.333 0.00 0.00 0.00 2.83
2566 3277 7.554835 ACCACTGTCAAAAGAAGTAATACACAA 59.445 33.333 0.00 0.00 0.00 3.33
2568 3279 7.492352 ACCACTGTCAAAAGAAGTAATACAC 57.508 36.000 0.00 0.00 0.00 2.90
2569 3280 7.771361 TGAACCACTGTCAAAAGAAGTAATACA 59.229 33.333 0.00 0.00 0.00 2.29
2570 3281 8.149973 TGAACCACTGTCAAAAGAAGTAATAC 57.850 34.615 0.00 0.00 0.00 1.89
2573 3284 7.639113 AATGAACCACTGTCAAAAGAAGTAA 57.361 32.000 0.00 0.00 0.00 2.24
2574 3285 7.771361 TGTAATGAACCACTGTCAAAAGAAGTA 59.229 33.333 0.00 0.00 0.00 2.24
2575 3286 6.601613 TGTAATGAACCACTGTCAAAAGAAGT 59.398 34.615 0.00 0.00 0.00 3.01
2578 3289 6.770303 TGATGTAATGAACCACTGTCAAAAGA 59.230 34.615 0.00 0.00 0.00 2.52
2579 3290 6.969366 TGATGTAATGAACCACTGTCAAAAG 58.031 36.000 0.00 0.00 0.00 2.27
2581 3292 7.230309 TCAATGATGTAATGAACCACTGTCAAA 59.770 33.333 0.00 0.00 0.00 2.69
2584 3295 6.741992 TCAATGATGTAATGAACCACTGTC 57.258 37.500 0.00 0.00 0.00 3.51
2586 3297 6.023435 CGTTCAATGATGTAATGAACCACTG 58.977 40.000 11.08 0.00 46.35 3.66
2587 3298 5.937540 TCGTTCAATGATGTAATGAACCACT 59.062 36.000 11.08 0.00 46.35 4.00
2588 3299 6.176975 TCGTTCAATGATGTAATGAACCAC 57.823 37.500 11.08 0.00 46.35 4.16
2589 3300 6.607689 GTTCGTTCAATGATGTAATGAACCA 58.392 36.000 11.08 0.00 46.35 3.67
2595 3306 6.620678 CAAAGGGTTCGTTCAATGATGTAAT 58.379 36.000 0.00 0.00 0.00 1.89
2735 3447 6.761099 TTTCTAGAGTAGTAGTGAGGCAAG 57.239 41.667 0.00 0.00 0.00 4.01
2805 3785 1.273327 CCATGCTGGAAGTCCCAAAAC 59.727 52.381 0.00 0.00 46.07 2.43
2959 3939 2.048222 TCGCCTTGAGCCAACTCG 60.048 61.111 0.00 0.00 46.69 4.18
3118 4098 1.072332 TTTGCAGCAAGCCCGAGTA 59.928 52.632 8.12 0.00 44.83 2.59
3344 4339 3.126001 ACTGCGGTCTTGATCAAAAGA 57.874 42.857 9.88 0.90 33.77 2.52
3403 4398 1.234821 GTTGAACAATGTGGAGCGGA 58.765 50.000 0.00 0.00 0.00 5.54
3955 4950 8.452989 AAGCTTTTATGAACTTTATGCTTTCG 57.547 30.769 0.00 0.00 35.11 3.46
4738 5736 2.145397 ACTCTTGGATGCGAGGAGTA 57.855 50.000 1.05 0.00 35.79 2.59
4759 5760 3.426695 GCTTCCACCAATTGAGAATGTCG 60.427 47.826 7.12 0.00 0.00 4.35
4771 5772 0.961019 GCATGTTGAGCTTCCACCAA 59.039 50.000 0.00 0.00 0.00 3.67
4894 5898 1.197036 CTTCTGTAGTCGTCGAGCACA 59.803 52.381 0.00 1.78 0.00 4.57
4954 5958 2.437413 GAATTCGGAAGCCAGTCCTTT 58.563 47.619 0.00 0.00 35.31 3.11
5146 6152 7.492669 CACGACAAATTACATTCTAGGACAGAT 59.507 37.037 0.00 0.00 31.77 2.90
5191 6197 2.837498 CGGACATAACAGCATGGATGA 58.163 47.619 0.00 0.00 43.62 2.92
5192 6198 1.265095 GCGGACATAACAGCATGGATG 59.735 52.381 0.00 0.00 43.62 3.51
5193 6199 1.597742 GCGGACATAACAGCATGGAT 58.402 50.000 0.00 0.00 43.62 3.41
5211 6217 1.989706 TTACAACACAAGGAAGGGGC 58.010 50.000 0.00 0.00 0.00 5.80
5253 6262 2.665649 TACACATCCCTAGCAACGTG 57.334 50.000 0.00 0.00 0.00 4.49
5262 6271 4.860835 AGGGCCATACACATCCCT 57.139 55.556 6.18 0.00 43.98 4.20
5275 6284 2.081462 ACATTACGTTGCTTGTAGGGC 58.919 47.619 0.00 0.00 0.00 5.19
5276 6285 3.619929 GGTACATTACGTTGCTTGTAGGG 59.380 47.826 0.00 0.00 0.00 3.53
5277 6286 4.247258 TGGTACATTACGTTGCTTGTAGG 58.753 43.478 0.00 0.00 0.00 3.18
5278 6287 4.201685 GCTGGTACATTACGTTGCTTGTAG 60.202 45.833 0.00 0.00 38.20 2.74
5279 6288 3.680937 GCTGGTACATTACGTTGCTTGTA 59.319 43.478 0.00 0.00 38.20 2.41
5280 6289 2.482721 GCTGGTACATTACGTTGCTTGT 59.517 45.455 0.00 0.00 38.20 3.16
5332 6341 2.997980 AGTCATCACAACCACACACAA 58.002 42.857 0.00 0.00 0.00 3.33
5335 6344 2.687425 CCAAAGTCATCACAACCACACA 59.313 45.455 0.00 0.00 0.00 3.72
5341 6350 3.214328 ACTCCACCAAAGTCATCACAAC 58.786 45.455 0.00 0.00 0.00 3.32
5353 6362 2.536066 TGCTAGAGCTAACTCCACCAA 58.464 47.619 2.72 0.00 44.65 3.67
5354 6363 2.231716 TGCTAGAGCTAACTCCACCA 57.768 50.000 2.72 0.00 44.65 4.17
5355 6364 3.828875 AATGCTAGAGCTAACTCCACC 57.171 47.619 2.72 0.00 44.65 4.61
5357 6366 3.519510 ACCAAATGCTAGAGCTAACTCCA 59.480 43.478 2.72 0.00 44.65 3.86
5358 6367 4.143986 ACCAAATGCTAGAGCTAACTCC 57.856 45.455 2.72 0.00 44.65 3.85
5360 6369 5.810095 AGAAACCAAATGCTAGAGCTAACT 58.190 37.500 2.72 0.00 42.66 2.24
5361 6370 5.877564 AGAGAAACCAAATGCTAGAGCTAAC 59.122 40.000 2.72 0.00 42.66 2.34
5362 6371 6.054860 AGAGAAACCAAATGCTAGAGCTAA 57.945 37.500 2.72 0.00 42.66 3.09
5363 6372 5.187772 TGAGAGAAACCAAATGCTAGAGCTA 59.812 40.000 2.72 0.00 42.66 3.32
5364 6373 4.019860 TGAGAGAAACCAAATGCTAGAGCT 60.020 41.667 2.72 0.00 42.66 4.09
5365 6374 4.094146 GTGAGAGAAACCAAATGCTAGAGC 59.906 45.833 0.00 0.00 42.50 4.09
5366 6375 5.486526 AGTGAGAGAAACCAAATGCTAGAG 58.513 41.667 0.00 0.00 0.00 2.43
5368 6377 6.429385 AGAAAGTGAGAGAAACCAAATGCTAG 59.571 38.462 0.00 0.00 0.00 3.42
5369 6378 6.299141 AGAAAGTGAGAGAAACCAAATGCTA 58.701 36.000 0.00 0.00 0.00 3.49
5370 6379 5.136105 AGAAAGTGAGAGAAACCAAATGCT 58.864 37.500 0.00 0.00 0.00 3.79
5371 6380 5.444663 AGAAAGTGAGAGAAACCAAATGC 57.555 39.130 0.00 0.00 0.00 3.56
5375 6384 4.410883 TGGGTAGAAAGTGAGAGAAACCAA 59.589 41.667 0.00 0.00 0.00 3.67
5376 6385 3.971305 TGGGTAGAAAGTGAGAGAAACCA 59.029 43.478 0.00 0.00 0.00 3.67
5377 6386 4.618920 TGGGTAGAAAGTGAGAGAAACC 57.381 45.455 0.00 0.00 0.00 3.27
5378 6387 5.552178 ACATGGGTAGAAAGTGAGAGAAAC 58.448 41.667 0.00 0.00 0.00 2.78
5379 6388 5.825593 ACATGGGTAGAAAGTGAGAGAAA 57.174 39.130 0.00 0.00 0.00 2.52
5381 6390 6.928348 TTTACATGGGTAGAAAGTGAGAGA 57.072 37.500 0.00 0.00 0.00 3.10
5386 6395 7.393234 TGGAAGAATTTACATGGGTAGAAAGTG 59.607 37.037 0.00 0.00 0.00 3.16
5387 6396 7.393515 GTGGAAGAATTTACATGGGTAGAAAGT 59.606 37.037 0.00 0.00 0.00 2.66
5390 6399 5.878116 CGTGGAAGAATTTACATGGGTAGAA 59.122 40.000 0.00 0.00 0.00 2.10
5391 6400 5.424757 CGTGGAAGAATTTACATGGGTAGA 58.575 41.667 0.00 0.00 0.00 2.59
5392 6401 4.574828 CCGTGGAAGAATTTACATGGGTAG 59.425 45.833 0.00 0.00 38.19 3.18
5393 6402 4.225492 TCCGTGGAAGAATTTACATGGGTA 59.775 41.667 10.13 0.00 40.58 3.69
5394 6403 3.009695 TCCGTGGAAGAATTTACATGGGT 59.990 43.478 10.13 0.00 40.58 4.51
5396 6405 4.275936 GGATCCGTGGAAGAATTTACATGG 59.724 45.833 0.00 4.65 41.15 3.66
5397 6406 4.275936 GGGATCCGTGGAAGAATTTACATG 59.724 45.833 5.45 0.00 0.00 3.21
5398 6407 4.080015 TGGGATCCGTGGAAGAATTTACAT 60.080 41.667 5.45 0.00 0.00 2.29
5399 6408 3.264706 TGGGATCCGTGGAAGAATTTACA 59.735 43.478 5.45 0.00 0.00 2.41
5402 6411 3.669939 ATGGGATCCGTGGAAGAATTT 57.330 42.857 5.45 0.00 0.00 1.82
5403 6412 4.788925 TTATGGGATCCGTGGAAGAATT 57.211 40.909 5.45 0.00 0.00 2.17
5404 6413 5.324832 AATTATGGGATCCGTGGAAGAAT 57.675 39.130 5.45 0.00 0.00 2.40
5405 6414 4.788925 AATTATGGGATCCGTGGAAGAA 57.211 40.909 5.45 0.00 0.00 2.52
5406 6415 5.546110 TGATAATTATGGGATCCGTGGAAGA 59.454 40.000 5.45 0.00 0.00 2.87
5407 6416 5.804639 TGATAATTATGGGATCCGTGGAAG 58.195 41.667 5.45 0.00 0.00 3.46
5408 6417 5.834281 TGATAATTATGGGATCCGTGGAA 57.166 39.130 5.45 0.00 0.00 3.53
5409 6418 5.104527 GGATGATAATTATGGGATCCGTGGA 60.105 44.000 5.45 0.00 0.00 4.02
5410 6419 5.126067 GGATGATAATTATGGGATCCGTGG 58.874 45.833 5.45 0.00 0.00 4.94
5411 6420 4.811024 CGGATGATAATTATGGGATCCGTG 59.189 45.833 25.38 11.46 44.67 4.94
5412 6421 5.023533 CGGATGATAATTATGGGATCCGT 57.976 43.478 25.38 0.00 44.67 4.69
5414 6423 5.373812 ACCGGATGATAATTATGGGATCC 57.626 43.478 9.46 1.92 0.00 3.36
5415 6424 5.523916 CGAACCGGATGATAATTATGGGATC 59.476 44.000 9.46 2.04 0.00 3.36
5416 6425 5.428253 CGAACCGGATGATAATTATGGGAT 58.572 41.667 9.46 0.00 0.00 3.85
5417 6426 4.827692 CGAACCGGATGATAATTATGGGA 58.172 43.478 9.46 0.00 0.00 4.37
5418 6427 3.374058 GCGAACCGGATGATAATTATGGG 59.626 47.826 9.46 0.00 0.00 4.00
5419 6428 3.374058 GGCGAACCGGATGATAATTATGG 59.626 47.826 9.46 0.00 0.00 2.74
5420 6429 4.093408 CAGGCGAACCGGATGATAATTATG 59.907 45.833 9.46 0.00 42.76 1.90
5422 6431 3.070446 ACAGGCGAACCGGATGATAATTA 59.930 43.478 9.46 0.00 42.76 1.40
5423 6432 2.158813 ACAGGCGAACCGGATGATAATT 60.159 45.455 9.46 0.00 42.76 1.40
5424 6433 1.416401 ACAGGCGAACCGGATGATAAT 59.584 47.619 9.46 0.00 42.76 1.28
5425 6434 0.828022 ACAGGCGAACCGGATGATAA 59.172 50.000 9.46 0.00 42.76 1.75
5426 6435 0.828022 AACAGGCGAACCGGATGATA 59.172 50.000 9.46 0.00 42.76 2.15
5427 6436 0.462047 GAACAGGCGAACCGGATGAT 60.462 55.000 9.46 0.00 42.76 2.45
5428 6437 1.079405 GAACAGGCGAACCGGATGA 60.079 57.895 9.46 0.00 42.76 2.92
5429 6438 0.673644 AAGAACAGGCGAACCGGATG 60.674 55.000 9.46 0.00 42.76 3.51
5431 6440 1.301401 CAAGAACAGGCGAACCGGA 60.301 57.895 9.46 0.00 42.76 5.14
5432 6441 2.966309 GCAAGAACAGGCGAACCGG 61.966 63.158 0.00 0.00 42.76 5.28
5433 6442 1.901650 GAGCAAGAACAGGCGAACCG 61.902 60.000 0.00 0.00 42.76 4.44
5434 6443 1.869690 GAGCAAGAACAGGCGAACC 59.130 57.895 0.00 0.00 34.54 3.62
5436 6445 0.944311 GACGAGCAAGAACAGGCGAA 60.944 55.000 0.00 0.00 34.54 4.70
5437 6446 1.372997 GACGAGCAAGAACAGGCGA 60.373 57.895 0.00 0.00 34.54 5.54
5438 6447 2.383527 GGACGAGCAAGAACAGGCG 61.384 63.158 0.00 0.00 34.54 5.52
5440 6449 1.294659 GCAGGACGAGCAAGAACAGG 61.295 60.000 0.00 0.00 0.00 4.00
5441 6450 0.320247 AGCAGGACGAGCAAGAACAG 60.320 55.000 0.00 0.00 0.00 3.16
5442 6451 0.319900 GAGCAGGACGAGCAAGAACA 60.320 55.000 0.00 0.00 0.00 3.18
5444 6453 1.293498 GGAGCAGGACGAGCAAGAA 59.707 57.895 0.00 0.00 0.00 2.52
5445 6454 2.973899 GGAGCAGGACGAGCAAGA 59.026 61.111 0.00 0.00 0.00 3.02
5446 6455 2.507992 CGGAGCAGGACGAGCAAG 60.508 66.667 0.00 0.00 0.00 4.01
5447 6456 4.069232 CCGGAGCAGGACGAGCAA 62.069 66.667 0.00 0.00 0.00 3.91
5450 6459 4.200283 GAGCCGGAGCAGGACGAG 62.200 72.222 5.05 0.00 43.56 4.18
5451 6460 4.742649 AGAGCCGGAGCAGGACGA 62.743 66.667 5.05 0.00 43.56 4.20
5452 6461 3.764466 AAGAGCCGGAGCAGGACG 61.764 66.667 5.05 0.00 43.56 4.79
5453 6462 2.125350 CAAGAGCCGGAGCAGGAC 60.125 66.667 5.05 0.00 43.56 3.85
5454 6463 3.393970 CCAAGAGCCGGAGCAGGA 61.394 66.667 5.05 0.00 43.56 3.86
5455 6464 3.382803 CTCCAAGAGCCGGAGCAGG 62.383 68.421 5.05 0.00 43.50 4.85
5456 6465 2.186384 CTCCAAGAGCCGGAGCAG 59.814 66.667 5.05 0.00 43.50 4.24
5648 6657 0.322008 GAGGACCTGAGGCCTTGTTG 60.322 60.000 6.77 0.00 31.35 3.33
5656 6665 0.326264 CCAAACCTGAGGACCTGAGG 59.674 60.000 24.25 24.25 40.68 3.86
5657 6666 0.322008 GCCAAACCTGAGGACCTGAG 60.322 60.000 4.99 0.00 0.00 3.35
5658 6667 1.761174 GCCAAACCTGAGGACCTGA 59.239 57.895 4.99 0.00 0.00 3.86
5659 6668 1.303643 GGCCAAACCTGAGGACCTG 60.304 63.158 4.99 0.00 34.51 4.00
5660 6669 3.171348 GGCCAAACCTGAGGACCT 58.829 61.111 4.99 0.00 34.51 3.85
5698 6707 3.379372 CAGCCTGATGGAAAATCGAATGT 59.621 43.478 0.00 0.00 34.57 2.71
5726 6735 5.168526 TGACAGTTCAAATTGAAACGGAG 57.831 39.130 10.27 1.97 38.22 4.63
5749 6758 9.819267 CCCTCTCTTTCTAAATATAAGACGTTT 57.181 33.333 0.00 0.00 0.00 3.60
5751 6760 8.763984 TCCCTCTCTTTCTAAATATAAGACGT 57.236 34.615 0.00 0.00 0.00 4.34
5752 6761 8.852135 ACTCCCTCTCTTTCTAAATATAAGACG 58.148 37.037 0.00 0.00 0.00 4.18
5759 6768 9.377238 GGGTAATACTCCCTCTCTTTCTAAATA 57.623 37.037 0.00 0.00 41.58 1.40
5760 6769 8.265108 GGGTAATACTCCCTCTCTTTCTAAAT 57.735 38.462 0.00 0.00 41.58 1.40
5773 6782 6.274908 AGGGATTGAATTAGGGTAATACTCCC 59.725 42.308 0.00 0.00 44.90 4.30
5774 6783 7.168905 CAGGGATTGAATTAGGGTAATACTCC 58.831 42.308 0.00 0.00 0.00 3.85
5775 6784 7.017254 TCCAGGGATTGAATTAGGGTAATACTC 59.983 40.741 0.00 0.00 0.00 2.59
5783 6806 3.515602 CCTCCAGGGATTGAATTAGGG 57.484 52.381 0.00 0.00 37.23 3.53
5797 6820 5.770162 AGACAAACAATTAAGTTCCCTCCAG 59.230 40.000 0.00 0.00 0.00 3.86
5811 6834 8.522830 ACCGAAATCATCAAATAGACAAACAAT 58.477 29.630 0.00 0.00 0.00 2.71
5812 6835 7.881142 ACCGAAATCATCAAATAGACAAACAA 58.119 30.769 0.00 0.00 0.00 2.83
5817 6840 5.290885 CGTGACCGAAATCATCAAATAGACA 59.709 40.000 0.00 0.00 35.63 3.41
5835 6858 2.110213 TGGTGTTCAGCCGTGACC 59.890 61.111 0.00 0.00 30.10 4.02
5852 6875 8.585881 TCTTCTGTAGCAGTTTCTAACTAATGT 58.414 33.333 0.00 0.00 40.46 2.71
5857 6880 6.902771 TCTCTTCTGTAGCAGTTTCTAACT 57.097 37.500 0.00 0.00 44.06 2.24
5858 6881 7.327518 GTCTTCTCTTCTGTAGCAGTTTCTAAC 59.672 40.741 0.00 0.00 32.61 2.34
5859 6882 7.014326 TGTCTTCTCTTCTGTAGCAGTTTCTAA 59.986 37.037 0.00 0.00 32.61 2.10
5860 6883 6.490381 TGTCTTCTCTTCTGTAGCAGTTTCTA 59.510 38.462 0.00 0.00 32.61 2.10
5861 6884 5.303078 TGTCTTCTCTTCTGTAGCAGTTTCT 59.697 40.000 0.00 0.00 32.61 2.52
5862 6885 5.533482 TGTCTTCTCTTCTGTAGCAGTTTC 58.467 41.667 0.00 0.00 32.61 2.78
5863 6886 5.303078 TCTGTCTTCTCTTCTGTAGCAGTTT 59.697 40.000 0.00 0.00 32.61 2.66
5866 6889 4.699735 TCTCTGTCTTCTCTTCTGTAGCAG 59.300 45.833 0.00 0.00 0.00 4.24
5867 6890 4.657013 TCTCTGTCTTCTCTTCTGTAGCA 58.343 43.478 0.00 0.00 0.00 3.49
5868 6891 5.504010 CGATCTCTGTCTTCTCTTCTGTAGC 60.504 48.000 0.00 0.00 0.00 3.58
5869 6892 5.504010 GCGATCTCTGTCTTCTCTTCTGTAG 60.504 48.000 0.00 0.00 0.00 2.74
5870 6893 4.334203 GCGATCTCTGTCTTCTCTTCTGTA 59.666 45.833 0.00 0.00 0.00 2.74
5872 6895 3.378112 AGCGATCTCTGTCTTCTCTTCTG 59.622 47.826 0.00 0.00 0.00 3.02
5873 6896 3.620488 AGCGATCTCTGTCTTCTCTTCT 58.380 45.455 0.00 0.00 0.00 2.85
5874 6897 5.008613 ACATAGCGATCTCTGTCTTCTCTTC 59.991 44.000 0.00 0.00 0.00 2.87
5876 6899 4.460263 ACATAGCGATCTCTGTCTTCTCT 58.540 43.478 0.00 0.00 0.00 3.10
5877 6900 4.829064 ACATAGCGATCTCTGTCTTCTC 57.171 45.455 0.00 0.00 0.00 2.87
5881 6906 3.739519 GCCAAACATAGCGATCTCTGTCT 60.740 47.826 0.00 0.00 29.60 3.41
5882 6907 2.541762 GCCAAACATAGCGATCTCTGTC 59.458 50.000 0.00 0.00 29.60 3.51
5884 6909 1.869767 GGCCAAACATAGCGATCTCTG 59.130 52.381 0.00 0.00 0.00 3.35
5889 6914 2.319136 TTACGGCCAAACATAGCGAT 57.681 45.000 2.24 0.00 0.00 4.58
5892 6917 3.439129 GGGATATTACGGCCAAACATAGC 59.561 47.826 2.24 0.00 0.00 2.97
5906 6931 6.533730 CAGGCTAAACACATCTGGGATATTA 58.466 40.000 0.00 0.00 0.00 0.98
5909 6934 3.433598 GCAGGCTAAACACATCTGGGATA 60.434 47.826 0.00 0.00 0.00 2.59
5912 6937 1.098050 GCAGGCTAAACACATCTGGG 58.902 55.000 0.00 0.00 0.00 4.45
5915 6940 2.430465 CAGTGCAGGCTAAACACATCT 58.570 47.619 14.52 0.00 36.76 2.90
5917 6942 0.883833 GCAGTGCAGGCTAAACACAT 59.116 50.000 11.09 0.94 36.76 3.21
5949 6974 3.674682 GCTGGACAGTGAAGCTACAGTAG 60.675 52.174 2.85 2.85 34.05 2.57
5950 6975 2.231478 GCTGGACAGTGAAGCTACAGTA 59.769 50.000 0.00 0.00 34.05 2.74
5951 6976 1.001406 GCTGGACAGTGAAGCTACAGT 59.999 52.381 0.00 0.00 34.05 3.55
5952 6977 1.001293 TGCTGGACAGTGAAGCTACAG 59.999 52.381 14.95 3.27 37.82 2.74
5953 6978 1.047801 TGCTGGACAGTGAAGCTACA 58.952 50.000 14.95 0.00 37.82 2.74
5954 6979 2.169832 TTGCTGGACAGTGAAGCTAC 57.830 50.000 14.95 0.00 37.82 3.58
5955 6980 3.369471 GGTATTGCTGGACAGTGAAGCTA 60.369 47.826 14.95 9.92 37.82 3.32
5956 6981 2.616510 GGTATTGCTGGACAGTGAAGCT 60.617 50.000 14.95 0.00 37.82 3.74
5957 6982 1.740025 GGTATTGCTGGACAGTGAAGC 59.260 52.381 0.00 3.66 37.46 3.86
5958 6983 3.057969 TGGTATTGCTGGACAGTGAAG 57.942 47.619 0.00 0.00 0.00 3.02
5959 6984 3.008923 TGATGGTATTGCTGGACAGTGAA 59.991 43.478 0.00 0.00 0.00 3.18
5960 6985 2.571202 TGATGGTATTGCTGGACAGTGA 59.429 45.455 0.00 0.00 0.00 3.41
5961 6986 2.989909 TGATGGTATTGCTGGACAGTG 58.010 47.619 0.82 0.00 0.00 3.66
5962 6987 3.939740 ATGATGGTATTGCTGGACAGT 57.060 42.857 0.82 0.00 0.00 3.55
5963 6988 4.965814 AGTATGATGGTATTGCTGGACAG 58.034 43.478 0.00 0.00 0.00 3.51
5964 6989 6.099701 AGTTAGTATGATGGTATTGCTGGACA 59.900 38.462 0.00 0.00 0.00 4.02
5965 6990 6.525629 AGTTAGTATGATGGTATTGCTGGAC 58.474 40.000 0.00 0.00 0.00 4.02
5966 6991 6.326323 TGAGTTAGTATGATGGTATTGCTGGA 59.674 38.462 0.00 0.00 0.00 3.86
5967 6992 6.425114 GTGAGTTAGTATGATGGTATTGCTGG 59.575 42.308 0.00 0.00 0.00 4.85
5968 6993 6.986231 TGTGAGTTAGTATGATGGTATTGCTG 59.014 38.462 0.00 0.00 0.00 4.41
5969 6994 7.124573 TGTGAGTTAGTATGATGGTATTGCT 57.875 36.000 0.00 0.00 0.00 3.91
5970 6995 7.786178 TTGTGAGTTAGTATGATGGTATTGC 57.214 36.000 0.00 0.00 0.00 3.56
5974 6999 9.431887 GTTCTTTTGTGAGTTAGTATGATGGTA 57.568 33.333 0.00 0.00 0.00 3.25
5975 7000 7.936847 TGTTCTTTTGTGAGTTAGTATGATGGT 59.063 33.333 0.00 0.00 0.00 3.55
5976 7001 8.322906 TGTTCTTTTGTGAGTTAGTATGATGG 57.677 34.615 0.00 0.00 0.00 3.51
5979 7004 9.778741 AGATTGTTCTTTTGTGAGTTAGTATGA 57.221 29.630 0.00 0.00 0.00 2.15
5982 7007 9.607988 TGAAGATTGTTCTTTTGTGAGTTAGTA 57.392 29.630 0.00 0.00 42.34 1.82
5983 7008 8.398665 GTGAAGATTGTTCTTTTGTGAGTTAGT 58.601 33.333 0.00 0.00 42.34 2.24
5984 7009 8.616076 AGTGAAGATTGTTCTTTTGTGAGTTAG 58.384 33.333 0.00 0.00 42.34 2.34
5985 7010 8.506168 AGTGAAGATTGTTCTTTTGTGAGTTA 57.494 30.769 0.00 0.00 42.34 2.24
5986 7011 7.396540 AGTGAAGATTGTTCTTTTGTGAGTT 57.603 32.000 0.00 0.00 42.34 3.01
5987 7012 8.682936 ATAGTGAAGATTGTTCTTTTGTGAGT 57.317 30.769 0.00 0.00 42.34 3.41
5988 7013 8.233190 GGATAGTGAAGATTGTTCTTTTGTGAG 58.767 37.037 0.00 0.00 42.34 3.51
5989 7014 7.719193 TGGATAGTGAAGATTGTTCTTTTGTGA 59.281 33.333 0.00 0.00 42.34 3.58
5990 7015 7.874940 TGGATAGTGAAGATTGTTCTTTTGTG 58.125 34.615 0.00 0.00 42.34 3.33
5991 7016 8.463930 TTGGATAGTGAAGATTGTTCTTTTGT 57.536 30.769 0.00 0.00 42.34 2.83
5998 7023 9.927081 AGGAAATATTGGATAGTGAAGATTGTT 57.073 29.630 0.00 0.00 0.00 2.83
5999 7024 9.927081 AAGGAAATATTGGATAGTGAAGATTGT 57.073 29.630 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.