Multiple sequence alignment - TraesCS4A01G250400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G250400 chr4A 100.000 2340 0 0 1 2340 561107025 561104686 0.000000e+00 4322
1 TraesCS4A01G250400 chr4A 78.601 486 82 20 863 1333 560998625 560998147 3.780000e-78 302
2 TraesCS4A01G250400 chr4A 83.682 239 31 5 1099 1332 561072079 561071844 3.920000e-53 219
3 TraesCS4A01G250400 chr4D 88.903 1541 83 39 6 1516 39272828 39274310 0.000000e+00 1818
4 TraesCS4A01G250400 chr4D 82.482 411 51 13 998 1391 39365965 39365559 8.010000e-90 340
5 TraesCS4A01G250400 chr4D 76.452 637 98 32 738 1332 39335868 39336494 4.890000e-77 298
6 TraesCS4A01G250400 chr4D 88.288 111 4 5 1507 1610 39274677 39274785 8.780000e-25 124
7 TraesCS4A01G250400 chr4D 97.674 43 1 0 1615 1657 39288278 39288320 8.970000e-10 75
8 TraesCS4A01G250400 chr4B 84.633 1796 155 53 9 1749 57529049 57530778 0.000000e+00 1676
9 TraesCS4A01G250400 chr4B 90.480 1250 72 19 299 1513 57272763 57271526 0.000000e+00 1605
10 TraesCS4A01G250400 chr4B 85.648 216 24 4 1121 1332 57741357 57741569 1.090000e-53 220
11 TraesCS4A01G250400 chr2A 84.839 653 46 23 1197 1829 541387022 541386403 1.990000e-170 608
12 TraesCS4A01G250400 chr2A 92.929 99 7 0 1926 2024 541386307 541386209 6.740000e-31 145
13 TraesCS4A01G250400 chr2A 82.249 169 23 7 36 201 185271833 185271669 3.140000e-29 139
14 TraesCS4A01G250400 chr6B 76.316 228 45 7 87 310 14092855 14092633 1.900000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G250400 chr4A 561104686 561107025 2339 True 4322.0 4322 100.0000 1 2340 1 chr4A.!!$R3 2339
1 TraesCS4A01G250400 chr4D 39272828 39274785 1957 False 971.0 1818 88.5955 6 1610 2 chr4D.!!$F3 1604
2 TraesCS4A01G250400 chr4D 39335868 39336494 626 False 298.0 298 76.4520 738 1332 1 chr4D.!!$F2 594
3 TraesCS4A01G250400 chr4B 57529049 57530778 1729 False 1676.0 1676 84.6330 9 1749 1 chr4B.!!$F1 1740
4 TraesCS4A01G250400 chr4B 57271526 57272763 1237 True 1605.0 1605 90.4800 299 1513 1 chr4B.!!$R1 1214
5 TraesCS4A01G250400 chr2A 541386209 541387022 813 True 376.5 608 88.8840 1197 2024 2 chr2A.!!$R2 827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
841 890 0.182061 ATCGCCTGCCATGTGATCTT 59.818 50.0 0.0 0.0 0.0 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2264 2851 0.032017 CTAGTAGGCCCAGTGACCCT 60.032 60.0 0.0 6.74 0.0 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.122167 GGGTCCGCGAGATCTGACT 61.122 63.158 8.23 0.00 0.00 3.41
31 32 3.242903 CGCGAGATCTGACTAAGACACAT 60.243 47.826 0.00 0.00 37.88 3.21
76 77 3.298686 AGACACACTATCGAGATGGGA 57.701 47.619 2.86 0.00 0.00 4.37
122 123 2.982130 GAGGGACATCACTGCCGT 59.018 61.111 0.00 0.00 0.00 5.68
166 167 2.651382 AACCTAACAAAAGCGGGAGT 57.349 45.000 0.00 0.00 0.00 3.85
206 214 1.457831 GGCCGAGGTCCTCCACTAT 60.458 63.158 13.54 0.00 35.89 2.12
218 226 3.726859 TCCTCCACTATTATTTGGCCCAT 59.273 43.478 0.00 0.00 32.37 4.00
237 245 2.599139 TAGGCCATAGCAGACGGGGT 62.599 60.000 5.01 0.00 42.56 4.95
282 290 3.636764 GAGGAGGAGGAAAGACTGAGATC 59.363 52.174 0.00 0.00 0.00 2.75
283 291 3.272020 AGGAGGAGGAAAGACTGAGATCT 59.728 47.826 0.00 0.00 0.00 2.75
284 292 4.030216 GGAGGAGGAAAGACTGAGATCTT 58.970 47.826 0.00 0.00 40.78 2.40
313 321 1.788229 AGAGGAGGAAAGAGGCTAGC 58.212 55.000 6.04 6.04 0.00 3.42
414 422 1.269517 GGACCTCGATAAGCAGCTCTG 60.270 57.143 0.00 0.00 0.00 3.35
427 435 6.847421 AAGCAGCTCTGGAAATAAAGAAAT 57.153 33.333 0.00 0.00 0.00 2.17
429 437 5.713861 AGCAGCTCTGGAAATAAAGAAATGT 59.286 36.000 0.00 0.00 0.00 2.71
433 441 9.512435 CAGCTCTGGAAATAAAGAAATGTAATG 57.488 33.333 0.00 0.00 0.00 1.90
546 556 1.445942 CAGGTCACGTCCCACTGTT 59.554 57.895 3.75 0.00 0.00 3.16
563 573 3.804325 ACTGTTTGTGATCTGTGAACTCG 59.196 43.478 0.00 0.00 0.00 4.18
657 673 3.196207 ATCCAGCACGGCAACACCT 62.196 57.895 0.00 0.00 35.61 4.00
665 681 1.010125 CGGCAACACCTCACAAACG 60.010 57.895 0.00 0.00 35.61 3.60
705 721 1.814793 GGCAACCTCCTCTGACTTTC 58.185 55.000 0.00 0.00 0.00 2.62
713 729 0.979665 CCTCTGACTTTCTGCCCTCA 59.020 55.000 0.00 0.00 0.00 3.86
728 744 0.748005 CCTCAATCGGCCGGACAAAT 60.748 55.000 27.83 8.08 0.00 2.32
841 890 0.182061 ATCGCCTGCCATGTGATCTT 59.818 50.000 0.00 0.00 0.00 2.40
843 892 1.028330 CGCCTGCCATGTGATCTTGT 61.028 55.000 0.00 0.00 0.00 3.16
849 898 4.262121 CCTGCCATGTGATCTTGTTTCAAA 60.262 41.667 0.00 0.00 0.00 2.69
855 904 3.505680 TGTGATCTTGTTTCAAATCCCCG 59.494 43.478 0.00 0.00 0.00 5.73
867 925 0.906282 AATCCCCGGTGAACCTACGT 60.906 55.000 0.00 0.00 0.00 3.57
969 1052 3.425713 CGCGCTGCAACCACAGAT 61.426 61.111 5.56 0.00 40.25 2.90
985 1073 2.500442 GATCGCACGACGCACAGAG 61.500 63.158 0.00 0.00 42.60 3.35
1106 1237 2.433604 TGATCAAGCATCACTCCCTCTC 59.566 50.000 0.00 0.00 36.51 3.20
1110 1241 0.323816 AGCATCACTCCCTCTCACGA 60.324 55.000 0.00 0.00 0.00 4.35
1113 1244 2.362397 GCATCACTCCCTCTCACGATTA 59.638 50.000 0.00 0.00 0.00 1.75
1114 1245 3.006323 GCATCACTCCCTCTCACGATTAT 59.994 47.826 0.00 0.00 0.00 1.28
1115 1246 4.554292 CATCACTCCCTCTCACGATTATG 58.446 47.826 0.00 0.00 0.00 1.90
1416 1572 2.969443 AATAAAGCTGCACGTGTGTC 57.031 45.000 18.38 6.20 0.00 3.67
1417 1573 0.790207 ATAAAGCTGCACGTGTGTCG 59.210 50.000 18.38 4.39 46.00 4.35
1434 1592 4.215185 TGTGTCGTACGTACATGGAGTAAA 59.785 41.667 24.50 0.47 33.72 2.01
1471 1630 4.974368 AAGTTTGTGTCGTGGAATGAAA 57.026 36.364 0.00 0.00 30.74 2.69
1520 2059 4.489771 CAGGGCTAAGCACCGGGG 62.490 72.222 6.32 0.84 28.43 5.73
1582 2124 0.537371 AGCTCAGTTTTTGGACCCCG 60.537 55.000 0.00 0.00 0.00 5.73
1587 2131 1.142936 AGTTTTTGGACCCCGGTAGT 58.857 50.000 0.00 0.00 0.00 2.73
1596 2140 2.660802 CCCGGTAGTTGGCGAACT 59.339 61.111 18.49 18.49 44.90 3.01
1597 2141 1.447314 CCCGGTAGTTGGCGAACTC 60.447 63.158 18.00 9.51 41.75 3.01
1653 2197 5.432680 TTCTTGGCAGATTCTTCAGAGAT 57.567 39.130 0.00 0.00 0.00 2.75
1677 2221 4.730657 CATGCCATTTTCTTCAGAGACAC 58.269 43.478 0.00 0.00 0.00 3.67
1697 2247 5.025453 ACACATGGCTGGGAAGAATAAAAT 58.975 37.500 0.00 0.00 0.00 1.82
1700 2250 6.314400 CACATGGCTGGGAAGAATAAAATTTG 59.686 38.462 0.00 0.00 0.00 2.32
1702 2252 6.036577 TGGCTGGGAAGAATAAAATTTGAC 57.963 37.500 0.00 0.00 0.00 3.18
1704 2254 4.562789 GCTGGGAAGAATAAAATTTGACGC 59.437 41.667 0.00 0.00 0.00 5.19
1705 2255 5.708948 CTGGGAAGAATAAAATTTGACGCA 58.291 37.500 0.00 0.00 0.00 5.24
1714 2265 3.834435 AAATTTGACGCAAAAACGAGC 57.166 38.095 8.65 0.00 36.90 5.03
1724 2275 2.792749 CAAAAACGAGCGGAAACTGTT 58.207 42.857 0.00 0.00 0.00 3.16
1726 2277 3.872560 AAAACGAGCGGAAACTGTTAG 57.127 42.857 0.00 0.00 0.00 2.34
1752 2303 0.989890 ATCTCGCGTCGCAACTAAAC 59.010 50.000 18.75 0.00 0.00 2.01
1754 2305 1.279527 CTCGCGTCGCAACTAAACCA 61.280 55.000 18.75 0.00 0.00 3.67
1755 2306 0.668096 TCGCGTCGCAACTAAACCAT 60.668 50.000 18.75 0.00 0.00 3.55
1757 2308 0.793861 GCGTCGCAACTAAACCATCA 59.206 50.000 13.44 0.00 0.00 3.07
1758 2309 1.201921 GCGTCGCAACTAAACCATCAG 60.202 52.381 13.44 0.00 0.00 2.90
1759 2310 1.201921 CGTCGCAACTAAACCATCAGC 60.202 52.381 0.00 0.00 0.00 4.26
1760 2311 1.804151 GTCGCAACTAAACCATCAGCA 59.196 47.619 0.00 0.00 0.00 4.41
1762 2313 2.483877 TCGCAACTAAACCATCAGCAAG 59.516 45.455 0.00 0.00 0.00 4.01
1763 2314 2.599659 GCAACTAAACCATCAGCAAGC 58.400 47.619 0.00 0.00 0.00 4.01
1764 2315 2.855180 CAACTAAACCATCAGCAAGCG 58.145 47.619 0.00 0.00 0.00 4.68
1777 2332 1.463444 AGCAAGCGTTCGTGGAATAAC 59.537 47.619 0.00 0.00 0.00 1.89
1778 2333 1.465187 GCAAGCGTTCGTGGAATAACC 60.465 52.381 0.00 0.00 39.54 2.85
1781 2336 0.643820 GCGTTCGTGGAATAACCGAG 59.356 55.000 0.00 0.00 42.61 4.63
1796 2351 2.398588 ACCGAGGAATGGAATGCTAGA 58.601 47.619 0.00 0.00 0.00 2.43
1812 2368 4.249661 TGCTAGATTGTGTCGTGCAAATA 58.750 39.130 0.00 0.00 37.14 1.40
1829 2385 5.850557 CAAATATGCAATGGGTAACAGGA 57.149 39.130 0.00 0.00 39.74 3.86
1830 2386 5.591099 CAAATATGCAATGGGTAACAGGAC 58.409 41.667 0.00 0.00 39.74 3.85
1831 2387 2.897271 ATGCAATGGGTAACAGGACA 57.103 45.000 0.00 0.00 39.74 4.02
1834 2390 2.890311 TGCAATGGGTAACAGGACAAAG 59.110 45.455 0.00 0.00 39.74 2.77
1835 2391 2.352715 GCAATGGGTAACAGGACAAAGC 60.353 50.000 0.00 0.00 39.74 3.51
1836 2392 2.890311 CAATGGGTAACAGGACAAAGCA 59.110 45.455 0.00 0.00 39.74 3.91
1837 2393 1.975660 TGGGTAACAGGACAAAGCAC 58.024 50.000 0.00 0.00 39.74 4.40
1840 2396 3.073209 TGGGTAACAGGACAAAGCACATA 59.927 43.478 0.00 0.00 39.74 2.29
1841 2397 3.439129 GGGTAACAGGACAAAGCACATAC 59.561 47.826 0.00 0.00 39.74 2.39
1842 2398 4.069304 GGTAACAGGACAAAGCACATACA 58.931 43.478 0.00 0.00 0.00 2.29
1843 2399 4.517453 GGTAACAGGACAAAGCACATACAA 59.483 41.667 0.00 0.00 0.00 2.41
1844 2400 5.009210 GGTAACAGGACAAAGCACATACAAA 59.991 40.000 0.00 0.00 0.00 2.83
1845 2401 5.590530 AACAGGACAAAGCACATACAAAA 57.409 34.783 0.00 0.00 0.00 2.44
1847 2403 5.591099 ACAGGACAAAGCACATACAAAAAG 58.409 37.500 0.00 0.00 0.00 2.27
1851 2438 6.980397 AGGACAAAGCACATACAAAAAGAAAG 59.020 34.615 0.00 0.00 0.00 2.62
1865 2452 6.473455 ACAAAAAGAAAGAGAAACAAGCATCG 59.527 34.615 0.00 0.00 0.00 3.84
1866 2453 3.820777 AGAAAGAGAAACAAGCATCGC 57.179 42.857 0.00 0.00 0.00 4.58
1912 2499 6.944234 AAAAACAGAACTAGCTAGCACTTT 57.056 33.333 20.91 7.35 0.00 2.66
1913 2500 6.944234 AAAACAGAACTAGCTAGCACTTTT 57.056 33.333 20.91 14.96 0.00 2.27
1914 2501 6.944234 AAACAGAACTAGCTAGCACTTTTT 57.056 33.333 20.91 19.10 0.00 1.94
1935 2522 5.683876 TTTTGAGGATCTCCAGAACTAGG 57.316 43.478 0.00 0.00 38.89 3.02
1936 2523 4.338795 TTGAGGATCTCCAGAACTAGGT 57.661 45.455 0.00 0.00 38.89 3.08
1937 2524 5.467668 TTGAGGATCTCCAGAACTAGGTA 57.532 43.478 0.00 0.00 38.89 3.08
1938 2525 5.055265 TGAGGATCTCCAGAACTAGGTAG 57.945 47.826 0.00 0.00 38.89 3.18
1939 2526 3.824443 GAGGATCTCCAGAACTAGGTAGC 59.176 52.174 0.00 0.00 38.89 3.58
1975 2562 1.819226 GAGCGAGCGCACATGATCAG 61.819 60.000 17.68 0.00 44.88 2.90
1977 2564 1.819226 GCGAGCGCACATGATCAGAG 61.819 60.000 11.47 0.00 41.49 3.35
1978 2565 1.819226 CGAGCGCACATGATCAGAGC 61.819 60.000 11.47 4.16 0.00 4.09
1980 2567 0.179054 AGCGCACATGATCAGAGCAT 60.179 50.000 11.47 0.00 0.00 3.79
1985 2572 2.794981 GCACATGATCAGAGCATTGCAC 60.795 50.000 21.16 4.48 33.76 4.57
2024 2611 1.812686 TTGGGACGAACTCCTCCGTG 61.813 60.000 0.00 0.00 39.39 4.94
2025 2612 1.975407 GGGACGAACTCCTCCGTGA 60.975 63.158 0.00 0.00 39.39 4.35
2026 2613 1.212229 GGACGAACTCCTCCGTGAC 59.788 63.158 0.00 0.00 39.30 3.67
2027 2614 1.154263 GACGAACTCCTCCGTGACG 60.154 63.158 0.00 0.00 39.30 4.35
2028 2615 1.849976 GACGAACTCCTCCGTGACGT 61.850 60.000 3.64 0.00 39.30 4.34
2029 2616 1.154263 CGAACTCCTCCGTGACGTC 60.154 63.158 9.11 9.11 0.00 4.34
2030 2617 1.212229 GAACTCCTCCGTGACGTCC 59.788 63.158 14.12 3.43 0.00 4.79
2031 2618 1.521450 GAACTCCTCCGTGACGTCCA 61.521 60.000 14.12 0.00 0.00 4.02
2032 2619 0.898789 AACTCCTCCGTGACGTCCAT 60.899 55.000 14.12 0.00 0.00 3.41
2033 2620 0.034767 ACTCCTCCGTGACGTCCATA 60.035 55.000 14.12 0.00 0.00 2.74
2034 2621 0.663688 CTCCTCCGTGACGTCCATAG 59.336 60.000 14.12 5.28 0.00 2.23
2035 2622 0.253894 TCCTCCGTGACGTCCATAGA 59.746 55.000 14.12 3.87 0.00 1.98
2036 2623 1.133884 TCCTCCGTGACGTCCATAGAT 60.134 52.381 14.12 0.00 0.00 1.98
2037 2624 2.105306 TCCTCCGTGACGTCCATAGATA 59.895 50.000 14.12 0.00 0.00 1.98
2038 2625 3.082548 CCTCCGTGACGTCCATAGATAT 58.917 50.000 14.12 0.00 0.00 1.63
2039 2626 3.506455 CCTCCGTGACGTCCATAGATATT 59.494 47.826 14.12 0.00 0.00 1.28
2040 2627 4.476862 CTCCGTGACGTCCATAGATATTG 58.523 47.826 14.12 0.00 0.00 1.90
2041 2628 2.987149 CCGTGACGTCCATAGATATTGC 59.013 50.000 14.12 0.00 0.00 3.56
2042 2629 3.552068 CCGTGACGTCCATAGATATTGCA 60.552 47.826 14.12 0.00 0.00 4.08
2043 2630 4.237724 CGTGACGTCCATAGATATTGCAT 58.762 43.478 14.12 0.00 0.00 3.96
2044 2631 4.686091 CGTGACGTCCATAGATATTGCATT 59.314 41.667 14.12 0.00 0.00 3.56
2045 2632 5.861787 CGTGACGTCCATAGATATTGCATTA 59.138 40.000 14.12 0.00 0.00 1.90
2046 2633 6.033937 CGTGACGTCCATAGATATTGCATTAG 59.966 42.308 14.12 0.00 0.00 1.73
2047 2634 7.090808 GTGACGTCCATAGATATTGCATTAGA 58.909 38.462 14.12 0.00 0.00 2.10
2048 2635 7.274468 GTGACGTCCATAGATATTGCATTAGAG 59.726 40.741 14.12 0.00 0.00 2.43
2049 2636 7.039714 TGACGTCCATAGATATTGCATTAGAGT 60.040 37.037 14.12 0.00 0.00 3.24
2050 2637 8.349568 ACGTCCATAGATATTGCATTAGAGTA 57.650 34.615 0.00 0.00 0.00 2.59
2051 2638 8.972127 ACGTCCATAGATATTGCATTAGAGTAT 58.028 33.333 0.00 0.00 0.00 2.12
2052 2639 9.457110 CGTCCATAGATATTGCATTAGAGTATC 57.543 37.037 0.00 0.00 0.00 2.24
2072 2659 8.840200 AGTATCTCCAACATTAACCTCTAAGA 57.160 34.615 0.00 0.00 0.00 2.10
2073 2660 8.697292 AGTATCTCCAACATTAACCTCTAAGAC 58.303 37.037 0.00 0.00 0.00 3.01
2074 2661 5.962433 TCTCCAACATTAACCTCTAAGACG 58.038 41.667 0.00 0.00 0.00 4.18
2075 2662 5.080969 TCCAACATTAACCTCTAAGACGG 57.919 43.478 0.00 0.00 0.00 4.79
2076 2663 4.081309 TCCAACATTAACCTCTAAGACGGG 60.081 45.833 0.00 0.00 0.00 5.28
2077 2664 3.538634 ACATTAACCTCTAAGACGGGC 57.461 47.619 0.00 0.00 0.00 6.13
2078 2665 2.835764 ACATTAACCTCTAAGACGGGCA 59.164 45.455 0.00 0.00 0.00 5.36
2079 2666 3.454812 ACATTAACCTCTAAGACGGGCAT 59.545 43.478 0.00 0.00 0.00 4.40
2080 2667 4.080526 ACATTAACCTCTAAGACGGGCATT 60.081 41.667 0.00 0.00 0.00 3.56
2081 2668 2.403252 AACCTCTAAGACGGGCATTG 57.597 50.000 0.00 0.00 0.00 2.82
2082 2669 1.276622 ACCTCTAAGACGGGCATTGT 58.723 50.000 0.00 0.00 0.00 2.71
2083 2670 2.463752 ACCTCTAAGACGGGCATTGTA 58.536 47.619 0.00 0.00 0.00 2.41
2084 2671 3.039011 ACCTCTAAGACGGGCATTGTAT 58.961 45.455 0.00 0.00 0.00 2.29
2085 2672 3.454812 ACCTCTAAGACGGGCATTGTATT 59.545 43.478 0.00 0.00 0.00 1.89
2086 2673 4.080526 ACCTCTAAGACGGGCATTGTATTT 60.081 41.667 0.00 0.00 0.00 1.40
2087 2674 4.273480 CCTCTAAGACGGGCATTGTATTTG 59.727 45.833 0.00 0.00 0.00 2.32
2088 2675 4.839121 TCTAAGACGGGCATTGTATTTGT 58.161 39.130 0.00 0.00 0.00 2.83
2089 2676 4.873827 TCTAAGACGGGCATTGTATTTGTC 59.126 41.667 0.00 0.00 0.00 3.18
2090 2677 2.365582 AGACGGGCATTGTATTTGTCC 58.634 47.619 0.00 0.00 35.45 4.02
2092 2679 3.641031 GGGCATTGTATTTGTCCGC 57.359 52.632 0.00 0.00 0.00 5.54
2093 2680 0.248458 GGGCATTGTATTTGTCCGCG 60.248 55.000 0.00 0.00 0.00 6.46
2094 2681 0.730265 GGCATTGTATTTGTCCGCGA 59.270 50.000 8.23 0.00 0.00 5.87
2095 2682 1.131504 GGCATTGTATTTGTCCGCGAA 59.868 47.619 8.23 0.00 0.00 4.70
2096 2683 2.414824 GGCATTGTATTTGTCCGCGAAA 60.415 45.455 8.23 0.00 0.00 3.46
2097 2684 3.434637 GCATTGTATTTGTCCGCGAAAT 58.565 40.909 8.23 8.70 0.00 2.17
2098 2685 3.482110 GCATTGTATTTGTCCGCGAAATC 59.518 43.478 8.23 1.47 0.00 2.17
2099 2686 4.657055 CATTGTATTTGTCCGCGAAATCA 58.343 39.130 8.23 4.02 0.00 2.57
2100 2687 4.955925 TTGTATTTGTCCGCGAAATCAT 57.044 36.364 8.23 0.00 0.00 2.45
2101 2688 4.271590 TGTATTTGTCCGCGAAATCATG 57.728 40.909 8.23 0.00 0.00 3.07
2102 2689 2.849880 ATTTGTCCGCGAAATCATGG 57.150 45.000 8.23 0.00 0.00 3.66
2103 2690 0.808125 TTTGTCCGCGAAATCATGGG 59.192 50.000 8.23 0.00 0.00 4.00
2104 2691 0.035915 TTGTCCGCGAAATCATGGGA 60.036 50.000 8.23 0.00 0.00 4.37
2105 2692 0.035915 TGTCCGCGAAATCATGGGAA 60.036 50.000 8.23 0.00 0.00 3.97
2106 2693 0.657840 GTCCGCGAAATCATGGGAAG 59.342 55.000 8.23 0.00 0.00 3.46
2107 2694 0.539518 TCCGCGAAATCATGGGAAGA 59.460 50.000 8.23 0.00 0.00 2.87
2108 2695 0.657840 CCGCGAAATCATGGGAAGAC 59.342 55.000 8.23 0.00 0.00 3.01
2109 2696 1.368641 CGCGAAATCATGGGAAGACA 58.631 50.000 0.00 0.00 0.00 3.41
2110 2697 1.737236 CGCGAAATCATGGGAAGACAA 59.263 47.619 0.00 0.00 0.00 3.18
2111 2698 2.161410 CGCGAAATCATGGGAAGACAAA 59.839 45.455 0.00 0.00 0.00 2.83
2112 2699 3.501950 GCGAAATCATGGGAAGACAAAC 58.498 45.455 0.00 0.00 0.00 2.93
2113 2700 3.191371 GCGAAATCATGGGAAGACAAACT 59.809 43.478 0.00 0.00 0.00 2.66
2114 2701 4.672801 GCGAAATCATGGGAAGACAAACTC 60.673 45.833 0.00 0.00 0.00 3.01
2115 2702 4.436050 CGAAATCATGGGAAGACAAACTCG 60.436 45.833 0.00 0.00 0.00 4.18
2116 2703 3.981071 ATCATGGGAAGACAAACTCGA 57.019 42.857 0.00 0.00 0.00 4.04
2117 2704 3.319137 TCATGGGAAGACAAACTCGAG 57.681 47.619 11.84 11.84 0.00 4.04
2118 2705 1.734465 CATGGGAAGACAAACTCGAGC 59.266 52.381 13.61 0.00 0.00 5.03
2119 2706 1.048601 TGGGAAGACAAACTCGAGCT 58.951 50.000 13.61 0.00 0.00 4.09
2120 2707 1.000955 TGGGAAGACAAACTCGAGCTC 59.999 52.381 13.61 2.73 0.00 4.09
2121 2708 1.673329 GGGAAGACAAACTCGAGCTCC 60.673 57.143 13.61 7.07 0.00 4.70
2122 2709 1.000955 GGAAGACAAACTCGAGCTCCA 59.999 52.381 13.61 0.00 0.00 3.86
2123 2710 2.062519 GAAGACAAACTCGAGCTCCAC 58.937 52.381 13.61 1.80 0.00 4.02
2124 2711 1.040646 AGACAAACTCGAGCTCCACA 58.959 50.000 13.61 0.00 0.00 4.17
2125 2712 1.140816 GACAAACTCGAGCTCCACAC 58.859 55.000 13.61 0.00 0.00 3.82
2126 2713 0.249911 ACAAACTCGAGCTCCACACC 60.250 55.000 13.61 0.00 0.00 4.16
2127 2714 0.034059 CAAACTCGAGCTCCACACCT 59.966 55.000 13.61 0.00 0.00 4.00
2128 2715 0.034059 AAACTCGAGCTCCACACCTG 59.966 55.000 13.61 0.00 0.00 4.00
2129 2716 2.125753 CTCGAGCTCCACACCTGC 60.126 66.667 8.47 0.00 0.00 4.85
2130 2717 2.601666 TCGAGCTCCACACCTGCT 60.602 61.111 8.47 0.00 40.02 4.24
2131 2718 2.125753 CGAGCTCCACACCTGCTC 60.126 66.667 8.47 0.00 46.73 4.26
2132 2719 2.267324 GAGCTCCACACCTGCTCC 59.733 66.667 0.87 0.00 45.12 4.70
2133 2720 2.203907 AGCTCCACACCTGCTCCT 60.204 61.111 0.00 0.00 30.41 3.69
2134 2721 2.046507 GCTCCACACCTGCTCCTG 60.047 66.667 0.00 0.00 0.00 3.86
2135 2722 2.587247 GCTCCACACCTGCTCCTGA 61.587 63.158 0.00 0.00 0.00 3.86
2136 2723 1.595882 CTCCACACCTGCTCCTGAG 59.404 63.158 0.00 0.00 0.00 3.35
2146 2733 2.187424 CTCCTGAGCTGCTGAGGC 59.813 66.667 27.62 4.70 34.85 4.70
2147 2734 2.284478 TCCTGAGCTGCTGAGGCT 60.284 61.111 27.62 0.00 43.26 4.58
2148 2735 1.901654 CTCCTGAGCTGCTGAGGCTT 61.902 60.000 27.62 0.00 40.40 4.35
2149 2736 1.745864 CCTGAGCTGCTGAGGCTTG 60.746 63.158 22.02 0.00 40.40 4.01
2150 2737 1.295746 CTGAGCTGCTGAGGCTTGA 59.704 57.895 7.01 0.00 40.40 3.02
2151 2738 0.741574 CTGAGCTGCTGAGGCTTGAG 60.742 60.000 7.01 0.00 40.40 3.02
2152 2739 1.190178 TGAGCTGCTGAGGCTTGAGA 61.190 55.000 7.01 0.00 40.40 3.27
2153 2740 0.460635 GAGCTGCTGAGGCTTGAGAG 60.461 60.000 7.01 0.00 40.40 3.20
2154 2741 1.449956 GCTGCTGAGGCTTGAGAGG 60.450 63.158 0.00 0.00 39.59 3.69
2155 2742 1.897225 GCTGCTGAGGCTTGAGAGGA 61.897 60.000 0.00 0.00 39.59 3.71
2156 2743 0.612229 CTGCTGAGGCTTGAGAGGAA 59.388 55.000 0.00 0.00 39.59 3.36
2157 2744 0.612229 TGCTGAGGCTTGAGAGGAAG 59.388 55.000 0.00 0.00 39.59 3.46
2158 2745 0.744057 GCTGAGGCTTGAGAGGAAGC 60.744 60.000 0.00 0.00 46.49 3.86
2171 2758 2.125773 AGGAAGCCTCATTGCAGAAG 57.874 50.000 0.00 0.00 0.00 2.85
2172 2759 1.101331 GGAAGCCTCATTGCAGAAGG 58.899 55.000 6.71 6.71 0.00 3.46
2173 2760 1.101331 GAAGCCTCATTGCAGAAGGG 58.899 55.000 11.67 3.96 0.00 3.95
2174 2761 0.324091 AAGCCTCATTGCAGAAGGGG 60.324 55.000 11.67 5.20 0.00 4.79
2175 2762 1.755783 GCCTCATTGCAGAAGGGGG 60.756 63.158 11.67 0.00 36.50 5.40
2176 2763 1.755783 CCTCATTGCAGAAGGGGGC 60.756 63.158 3.75 0.00 0.00 5.80
2177 2764 2.045045 TCATTGCAGAAGGGGGCG 60.045 61.111 0.00 0.00 0.00 6.13
2178 2765 2.045045 CATTGCAGAAGGGGGCGA 60.045 61.111 0.00 0.00 0.00 5.54
2179 2766 1.454479 CATTGCAGAAGGGGGCGAT 60.454 57.895 0.00 0.00 34.48 4.58
2180 2767 1.454479 ATTGCAGAAGGGGGCGATG 60.454 57.895 0.00 0.00 32.96 3.84
2181 2768 2.215451 ATTGCAGAAGGGGGCGATGT 62.215 55.000 0.00 0.00 32.96 3.06
2182 2769 2.514824 GCAGAAGGGGGCGATGTC 60.515 66.667 0.00 0.00 0.00 3.06
2183 2770 2.989639 CAGAAGGGGGCGATGTCA 59.010 61.111 0.00 0.00 0.00 3.58
2184 2771 1.153289 CAGAAGGGGGCGATGTCAG 60.153 63.158 0.00 0.00 0.00 3.51
2185 2772 2.514824 GAAGGGGGCGATGTCAGC 60.515 66.667 0.00 0.00 0.00 4.26
2186 2773 3.329542 GAAGGGGGCGATGTCAGCA 62.330 63.158 0.00 0.00 36.08 4.41
2187 2774 2.615227 GAAGGGGGCGATGTCAGCAT 62.615 60.000 0.00 0.00 38.18 3.79
2188 2775 2.592861 GGGGGCGATGTCAGCATC 60.593 66.667 0.00 0.00 45.98 3.91
2189 2776 2.592861 GGGGCGATGTCAGCATCC 60.593 66.667 2.49 0.00 46.56 3.51
2190 2777 2.592861 GGGCGATGTCAGCATCCC 60.593 66.667 0.27 0.27 46.56 3.85
2191 2778 2.507944 GGCGATGTCAGCATCCCT 59.492 61.111 2.49 0.00 46.56 4.20
2192 2779 1.890979 GGCGATGTCAGCATCCCTG 60.891 63.158 2.49 0.00 46.56 4.45
2200 2787 2.092598 TCAGCATCCCTGATAGAGCA 57.907 50.000 0.00 0.00 45.44 4.26
2201 2788 2.401568 TCAGCATCCCTGATAGAGCAA 58.598 47.619 0.00 0.00 45.44 3.91
2202 2789 2.103771 TCAGCATCCCTGATAGAGCAAC 59.896 50.000 0.00 0.00 45.44 4.17
2203 2790 1.419387 AGCATCCCTGATAGAGCAACC 59.581 52.381 0.00 0.00 0.00 3.77
2204 2791 1.544314 GCATCCCTGATAGAGCAACCC 60.544 57.143 0.00 0.00 0.00 4.11
2205 2792 2.053244 CATCCCTGATAGAGCAACCCT 58.947 52.381 0.00 0.00 0.00 4.34
2206 2793 3.242867 CATCCCTGATAGAGCAACCCTA 58.757 50.000 0.00 0.00 0.00 3.53
2207 2794 2.679082 TCCCTGATAGAGCAACCCTAC 58.321 52.381 0.00 0.00 0.00 3.18
2208 2795 2.247635 TCCCTGATAGAGCAACCCTACT 59.752 50.000 0.00 0.00 0.00 2.57
2209 2796 3.465966 TCCCTGATAGAGCAACCCTACTA 59.534 47.826 0.00 0.00 0.00 1.82
2210 2797 4.108124 TCCCTGATAGAGCAACCCTACTAT 59.892 45.833 0.00 0.00 0.00 2.12
2211 2798 4.464597 CCCTGATAGAGCAACCCTACTATC 59.535 50.000 0.00 0.00 40.56 2.08
2212 2799 5.329399 CCTGATAGAGCAACCCTACTATCT 58.671 45.833 0.00 0.00 40.69 1.98
2213 2800 6.486056 CCTGATAGAGCAACCCTACTATCTA 58.514 44.000 0.00 0.00 40.69 1.98
2214 2801 6.601613 CCTGATAGAGCAACCCTACTATCTAG 59.398 46.154 0.00 0.00 40.69 2.43
2215 2802 7.092748 TGATAGAGCAACCCTACTATCTAGT 57.907 40.000 0.00 0.00 40.69 2.57
2216 2803 6.943146 TGATAGAGCAACCCTACTATCTAGTG 59.057 42.308 0.00 0.00 40.69 2.74
2217 2804 5.390087 AGAGCAACCCTACTATCTAGTGA 57.610 43.478 0.06 0.00 37.10 3.41
2218 2805 5.134661 AGAGCAACCCTACTATCTAGTGAC 58.865 45.833 0.06 0.00 37.10 3.67
2219 2806 4.216708 AGCAACCCTACTATCTAGTGACC 58.783 47.826 0.06 0.00 37.10 4.02
2220 2807 3.958798 GCAACCCTACTATCTAGTGACCA 59.041 47.826 0.06 0.00 37.10 4.02
2221 2808 4.404715 GCAACCCTACTATCTAGTGACCAA 59.595 45.833 0.06 0.00 37.10 3.67
2222 2809 5.452077 GCAACCCTACTATCTAGTGACCAAG 60.452 48.000 0.06 0.00 37.10 3.61
2223 2810 5.728937 ACCCTACTATCTAGTGACCAAGA 57.271 43.478 0.06 0.00 37.10 3.02
2224 2811 5.447757 ACCCTACTATCTAGTGACCAAGAC 58.552 45.833 0.06 0.00 37.10 3.01
2225 2812 5.044328 ACCCTACTATCTAGTGACCAAGACA 60.044 44.000 0.06 0.00 37.10 3.41
2226 2813 5.892119 CCCTACTATCTAGTGACCAAGACAA 59.108 44.000 0.06 0.00 37.10 3.18
2227 2814 6.183360 CCCTACTATCTAGTGACCAAGACAAC 60.183 46.154 0.06 0.00 37.10 3.32
2228 2815 6.603997 CCTACTATCTAGTGACCAAGACAACT 59.396 42.308 0.06 0.00 37.10 3.16
2229 2816 6.518208 ACTATCTAGTGACCAAGACAACTC 57.482 41.667 0.00 0.00 34.72 3.01
2230 2817 3.917329 TCTAGTGACCAAGACAACTCG 57.083 47.619 0.00 0.00 0.00 4.18
2231 2818 3.220110 TCTAGTGACCAAGACAACTCGT 58.780 45.455 0.00 0.00 0.00 4.18
2232 2819 2.981859 AGTGACCAAGACAACTCGTT 57.018 45.000 0.00 0.00 0.00 3.85
2233 2820 2.550978 AGTGACCAAGACAACTCGTTG 58.449 47.619 8.16 8.16 45.58 4.10
2234 2821 1.003866 GTGACCAAGACAACTCGTTGC 60.004 52.381 9.55 3.48 44.03 4.17
2235 2822 0.232303 GACCAAGACAACTCGTTGCG 59.768 55.000 9.55 0.00 44.03 4.85
2236 2823 0.179094 ACCAAGACAACTCGTTGCGA 60.179 50.000 9.55 0.00 44.03 5.10
2247 2834 2.554806 TCGTTGCGAGTTATGATCGT 57.445 45.000 0.00 0.00 42.13 3.73
2248 2835 2.447250 TCGTTGCGAGTTATGATCGTC 58.553 47.619 0.00 0.00 42.13 4.20
2249 2836 2.096980 TCGTTGCGAGTTATGATCGTCT 59.903 45.455 0.00 0.00 42.13 4.18
2250 2837 2.464380 CGTTGCGAGTTATGATCGTCTC 59.536 50.000 0.00 0.00 42.13 3.36
2251 2838 3.696898 GTTGCGAGTTATGATCGTCTCT 58.303 45.455 0.00 0.00 42.13 3.10
2252 2839 3.340337 TGCGAGTTATGATCGTCTCTG 57.660 47.619 0.00 0.00 42.13 3.35
2253 2840 2.047769 GCGAGTTATGATCGTCTCTGC 58.952 52.381 0.00 0.00 42.13 4.26
2254 2841 2.541794 GCGAGTTATGATCGTCTCTGCA 60.542 50.000 0.00 0.00 42.13 4.41
2255 2842 3.695816 CGAGTTATGATCGTCTCTGCAA 58.304 45.455 0.00 0.00 35.48 4.08
2256 2843 3.728221 CGAGTTATGATCGTCTCTGCAAG 59.272 47.826 0.00 0.00 35.48 4.01
2257 2844 4.047822 GAGTTATGATCGTCTCTGCAAGG 58.952 47.826 0.00 0.00 0.00 3.61
2258 2845 2.515926 TATGATCGTCTCTGCAAGGC 57.484 50.000 0.00 0.00 0.00 4.35
2259 2846 0.829333 ATGATCGTCTCTGCAAGGCT 59.171 50.000 0.00 0.00 0.00 4.58
2260 2847 1.474330 TGATCGTCTCTGCAAGGCTA 58.526 50.000 0.00 0.00 0.00 3.93
2261 2848 1.824852 TGATCGTCTCTGCAAGGCTAA 59.175 47.619 0.00 0.00 0.00 3.09
2262 2849 2.197577 GATCGTCTCTGCAAGGCTAAC 58.802 52.381 0.00 0.00 0.00 2.34
2263 2850 0.246635 TCGTCTCTGCAAGGCTAACC 59.753 55.000 0.00 0.00 0.00 2.85
2264 2851 0.037326 CGTCTCTGCAAGGCTAACCA 60.037 55.000 0.00 0.00 39.06 3.67
2265 2852 1.731720 GTCTCTGCAAGGCTAACCAG 58.268 55.000 0.00 0.00 39.06 4.00
2266 2853 0.615331 TCTCTGCAAGGCTAACCAGG 59.385 55.000 8.51 0.00 39.06 4.45
2267 2854 0.393537 CTCTGCAAGGCTAACCAGGG 60.394 60.000 8.51 2.70 39.06 4.45
2268 2855 1.133809 TCTGCAAGGCTAACCAGGGT 61.134 55.000 8.51 0.00 39.06 4.34
2269 2856 0.678048 CTGCAAGGCTAACCAGGGTC 60.678 60.000 0.00 0.00 39.06 4.46
2270 2857 1.378762 GCAAGGCTAACCAGGGTCA 59.621 57.895 0.00 0.00 39.06 4.02
2271 2858 0.960861 GCAAGGCTAACCAGGGTCAC 60.961 60.000 0.00 0.00 39.06 3.67
2272 2859 0.693049 CAAGGCTAACCAGGGTCACT 59.307 55.000 0.00 0.00 39.06 3.41
2280 2867 2.990479 CAGGGTCACTGGGCCTAC 59.010 66.667 4.53 0.00 43.70 3.18
2281 2868 1.613630 CAGGGTCACTGGGCCTACT 60.614 63.158 4.53 0.00 43.70 2.57
2282 2869 0.325296 CAGGGTCACTGGGCCTACTA 60.325 60.000 4.53 0.00 43.70 1.82
2283 2870 0.032017 AGGGTCACTGGGCCTACTAG 60.032 60.000 4.53 0.00 0.00 2.57
2284 2871 1.049289 GGGTCACTGGGCCTACTAGG 61.049 65.000 4.53 0.00 38.80 3.02
2285 2872 0.325390 GGTCACTGGGCCTACTAGGT 60.325 60.000 4.53 0.00 37.80 3.08
2286 2873 0.824759 GTCACTGGGCCTACTAGGTG 59.175 60.000 4.53 0.51 37.80 4.00
2287 2874 0.412244 TCACTGGGCCTACTAGGTGT 59.588 55.000 4.53 0.00 37.80 4.16
2288 2875 0.537188 CACTGGGCCTACTAGGTGTG 59.463 60.000 4.53 0.00 37.80 3.82
2289 2876 1.265454 ACTGGGCCTACTAGGTGTGC 61.265 60.000 4.53 0.00 37.80 4.57
2290 2877 2.298158 CTGGGCCTACTAGGTGTGCG 62.298 65.000 4.53 0.00 37.80 5.34
2291 2878 2.056223 GGGCCTACTAGGTGTGCGA 61.056 63.158 0.84 0.00 37.80 5.10
2292 2879 1.610554 GGGCCTACTAGGTGTGCGAA 61.611 60.000 0.84 0.00 37.80 4.70
2293 2880 0.179108 GGCCTACTAGGTGTGCGAAG 60.179 60.000 0.00 0.00 37.80 3.79
2294 2881 0.179108 GCCTACTAGGTGTGCGAAGG 60.179 60.000 3.95 0.00 37.80 3.46
2295 2882 1.471119 CCTACTAGGTGTGCGAAGGA 58.529 55.000 0.00 0.00 0.00 3.36
2296 2883 4.661138 GCCTACTAGGTGTGCGAAGGAC 62.661 59.091 3.95 0.00 42.58 3.85
2303 2890 3.998672 GTGCGAAGGACCGACCCA 61.999 66.667 0.00 0.00 45.47 4.51
2304 2891 3.000819 TGCGAAGGACCGACCCAT 61.001 61.111 0.00 0.00 40.05 4.00
2305 2892 2.202892 GCGAAGGACCGACCCATC 60.203 66.667 0.00 0.00 40.05 3.51
2306 2893 2.499685 CGAAGGACCGACCCATCC 59.500 66.667 0.00 0.00 40.05 3.51
2308 2895 1.823976 GAAGGACCGACCCATCCTC 59.176 63.158 0.00 0.00 44.97 3.71
2309 2896 0.976073 GAAGGACCGACCCATCCTCA 60.976 60.000 0.00 0.00 44.97 3.86
2310 2897 0.546747 AAGGACCGACCCATCCTCAA 60.547 55.000 0.00 0.00 44.97 3.02
2311 2898 1.221021 GGACCGACCCATCCTCAAC 59.779 63.158 0.00 0.00 31.75 3.18
2312 2899 1.550130 GGACCGACCCATCCTCAACA 61.550 60.000 0.00 0.00 31.75 3.33
2313 2900 0.391263 GACCGACCCATCCTCAACAC 60.391 60.000 0.00 0.00 0.00 3.32
2314 2901 0.836400 ACCGACCCATCCTCAACACT 60.836 55.000 0.00 0.00 0.00 3.55
2315 2902 1.191535 CCGACCCATCCTCAACACTA 58.808 55.000 0.00 0.00 0.00 2.74
2316 2903 1.134788 CCGACCCATCCTCAACACTAC 60.135 57.143 0.00 0.00 0.00 2.73
2317 2904 1.825474 CGACCCATCCTCAACACTACT 59.175 52.381 0.00 0.00 0.00 2.57
2318 2905 3.021695 CGACCCATCCTCAACACTACTA 58.978 50.000 0.00 0.00 0.00 1.82
2319 2906 3.446161 CGACCCATCCTCAACACTACTAA 59.554 47.826 0.00 0.00 0.00 2.24
2320 2907 4.081862 CGACCCATCCTCAACACTACTAAA 60.082 45.833 0.00 0.00 0.00 1.85
2321 2908 5.395324 CGACCCATCCTCAACACTACTAAAT 60.395 44.000 0.00 0.00 0.00 1.40
2322 2909 5.745227 ACCCATCCTCAACACTACTAAATG 58.255 41.667 0.00 0.00 0.00 2.32
2323 2910 4.576463 CCCATCCTCAACACTACTAAATGC 59.424 45.833 0.00 0.00 0.00 3.56
2324 2911 4.576463 CCATCCTCAACACTACTAAATGCC 59.424 45.833 0.00 0.00 0.00 4.40
2325 2912 4.901197 TCCTCAACACTACTAAATGCCA 57.099 40.909 0.00 0.00 0.00 4.92
2326 2913 5.235850 TCCTCAACACTACTAAATGCCAA 57.764 39.130 0.00 0.00 0.00 4.52
2327 2914 5.001232 TCCTCAACACTACTAAATGCCAAC 58.999 41.667 0.00 0.00 0.00 3.77
2328 2915 5.003804 CCTCAACACTACTAAATGCCAACT 58.996 41.667 0.00 0.00 0.00 3.16
2329 2916 5.106555 CCTCAACACTACTAAATGCCAACTG 60.107 44.000 0.00 0.00 0.00 3.16
2330 2917 4.215399 TCAACACTACTAAATGCCAACTGC 59.785 41.667 0.00 0.00 41.77 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.267503 GATCTCGCGGACCCGGTC 62.268 72.222 9.30 9.30 40.19 4.79
1 2 4.816984 AGATCTCGCGGACCCGGT 62.817 66.667 6.13 0.00 40.19 5.28
2 3 4.271816 CAGATCTCGCGGACCCGG 62.272 72.222 6.13 0.00 40.19 5.73
3 4 3.209812 TCAGATCTCGCGGACCCG 61.210 66.667 6.13 3.73 43.09 5.28
4 5 0.818445 TAGTCAGATCTCGCGGACCC 60.818 60.000 6.13 0.00 0.00 4.46
22 23 2.288579 GGACGTGTGGACATGTGTCTTA 60.289 50.000 1.15 0.72 45.32 2.10
31 32 1.605451 ATCGGAGGACGTGTGGACA 60.605 57.895 0.00 0.00 44.69 4.02
102 103 2.512515 GCAGTGATGTCCCTCGGC 60.513 66.667 0.00 0.00 0.00 5.54
122 123 4.102524 AGTGTCTTCATTAGGGTTGTGTGA 59.897 41.667 0.00 0.00 0.00 3.58
218 226 1.837051 CCCCGTCTGCTATGGCCTA 60.837 63.158 3.32 0.00 37.74 3.93
251 259 2.444706 CTCCTCCTCCCATCGGCA 60.445 66.667 0.00 0.00 0.00 5.69
254 262 0.755686 CTTTCCTCCTCCTCCCATCG 59.244 60.000 0.00 0.00 0.00 3.84
289 297 3.521727 AGCCTCTTTCCTCCTCTACAAA 58.478 45.455 0.00 0.00 0.00 2.83
313 321 6.805713 ACTTGGATCTTTACAAAACAGTTGG 58.194 36.000 0.00 0.00 0.00 3.77
376 384 1.618343 TCCATCGACCATCACGCATAT 59.382 47.619 0.00 0.00 0.00 1.78
377 385 1.036707 TCCATCGACCATCACGCATA 58.963 50.000 0.00 0.00 0.00 3.14
427 435 6.072008 CCAGTCAAACAATCATCACCATTACA 60.072 38.462 0.00 0.00 0.00 2.41
429 437 6.150976 GTCCAGTCAAACAATCATCACCATTA 59.849 38.462 0.00 0.00 0.00 1.90
433 441 3.191371 GGTCCAGTCAAACAATCATCACC 59.809 47.826 0.00 0.00 0.00 4.02
546 556 2.292292 TCGTCGAGTTCACAGATCACAA 59.708 45.455 0.00 0.00 0.00 3.33
553 563 1.531578 TCTCAGTCGTCGAGTTCACAG 59.468 52.381 0.00 0.00 0.00 3.66
563 573 1.716581 CGCTCAAAAGTCTCAGTCGTC 59.283 52.381 0.00 0.00 0.00 4.20
657 673 0.944311 GAGCGCCTCTTCGTTTGTGA 60.944 55.000 2.29 0.00 0.00 3.58
665 681 1.807573 CTTGGTCGAGCGCCTCTTC 60.808 63.158 10.46 0.00 0.00 2.87
713 729 1.024271 CATGATTTGTCCGGCCGATT 58.976 50.000 30.73 2.02 0.00 3.34
728 744 0.103755 GTCGATCTCAGGCAGCATGA 59.896 55.000 9.85 9.85 39.69 3.07
841 890 1.957877 GTTCACCGGGGATTTGAAACA 59.042 47.619 7.56 0.00 31.21 2.83
843 892 1.146152 AGGTTCACCGGGGATTTGAAA 59.854 47.619 7.56 0.00 42.08 2.69
849 898 1.305549 ACGTAGGTTCACCGGGGAT 60.306 57.895 7.56 0.00 42.08 3.85
855 904 0.533308 TTGTGCCACGTAGGTTCACC 60.533 55.000 12.45 0.00 40.61 4.02
867 925 0.397941 CCCTCTCTGACTTTGTGCCA 59.602 55.000 0.00 0.00 0.00 4.92
985 1073 2.571611 CATGCTTGCGCGTTCGTC 60.572 61.111 8.43 0.00 39.65 4.20
1081 1169 4.229639 AGGGAGTGATGCTTGATCATAGA 58.770 43.478 0.00 0.00 43.20 1.98
1095 1226 9.549271 AGGATACATAATCGTGAGAGGGAGTGA 62.549 44.444 0.00 0.00 42.48 3.41
1106 1237 5.294306 ACACAAGCAAGGATACATAATCGTG 59.706 40.000 0.00 0.00 41.41 4.35
1110 1241 7.466746 ACAAACACAAGCAAGGATACATAAT 57.533 32.000 0.00 0.00 41.41 1.28
1113 1244 5.068987 ACAACAAACACAAGCAAGGATACAT 59.931 36.000 0.00 0.00 41.41 2.29
1114 1245 4.400884 ACAACAAACACAAGCAAGGATACA 59.599 37.500 0.00 0.00 41.41 2.29
1115 1246 4.739716 CACAACAAACACAAGCAAGGATAC 59.260 41.667 0.00 0.00 0.00 2.24
1416 1572 6.191661 TCGTTATTTACTCCATGTACGTACG 58.808 40.000 20.18 15.01 0.00 3.67
1417 1573 7.969387 TTCGTTATTTACTCCATGTACGTAC 57.031 36.000 18.90 18.90 0.00 3.67
1418 1574 7.648908 CCATTCGTTATTTACTCCATGTACGTA 59.351 37.037 0.00 0.00 0.00 3.57
1419 1575 6.477688 CCATTCGTTATTTACTCCATGTACGT 59.522 38.462 0.00 0.00 0.00 3.57
1434 1592 8.106247 ACACAAACTTACATTCCATTCGTTAT 57.894 30.769 0.00 0.00 0.00 1.89
1471 1630 3.289836 TGATCAACGGATTGCATTCCAT 58.710 40.909 23.68 9.27 35.34 3.41
1526 2065 7.823745 TTTCAGTTTCTTTCCTTCTAATGCT 57.176 32.000 0.00 0.00 0.00 3.79
1582 2124 1.193874 CAAACGAGTTCGCCAACTACC 59.806 52.381 0.00 0.00 43.37 3.18
1587 2131 1.092921 ACAGCAAACGAGTTCGCCAA 61.093 50.000 0.73 0.00 44.43 4.52
1596 2140 0.684535 TCATCCCTCACAGCAAACGA 59.315 50.000 0.00 0.00 0.00 3.85
1597 2141 0.798776 GTCATCCCTCACAGCAAACG 59.201 55.000 0.00 0.00 0.00 3.60
1653 2197 3.192001 GTCTCTGAAGAAAATGGCATGCA 59.808 43.478 21.36 6.13 31.93 3.96
1677 2221 6.536224 GTCAAATTTTATTCTTCCCAGCCATG 59.464 38.462 0.00 0.00 0.00 3.66
1697 2247 2.848213 CGCTCGTTTTTGCGTCAAA 58.152 47.368 0.00 1.63 46.09 2.69
1704 2254 2.468532 ACAGTTTCCGCTCGTTTTTG 57.531 45.000 0.00 0.00 0.00 2.44
1705 2255 3.547413 GCTAACAGTTTCCGCTCGTTTTT 60.547 43.478 0.00 0.00 0.00 1.94
1714 2265 3.432252 AGATCAAACGCTAACAGTTTCCG 59.568 43.478 0.00 0.00 39.50 4.30
1715 2266 4.434330 CGAGATCAAACGCTAACAGTTTCC 60.434 45.833 0.00 0.00 39.50 3.13
1752 2303 1.133253 CACGAACGCTTGCTGATGG 59.867 57.895 0.00 0.00 0.00 3.51
1754 2305 0.602638 TTCCACGAACGCTTGCTGAT 60.603 50.000 0.00 0.00 0.00 2.90
1755 2306 0.602638 ATTCCACGAACGCTTGCTGA 60.603 50.000 0.00 0.00 0.00 4.26
1757 2308 1.463444 GTTATTCCACGAACGCTTGCT 59.537 47.619 0.00 0.00 0.00 3.91
1758 2309 1.465187 GGTTATTCCACGAACGCTTGC 60.465 52.381 0.00 0.00 35.97 4.01
1759 2310 1.201877 CGGTTATTCCACGAACGCTTG 60.202 52.381 0.00 0.00 35.57 4.01
1760 2311 1.073177 CGGTTATTCCACGAACGCTT 58.927 50.000 0.00 0.00 35.57 4.68
1762 2313 0.643820 CTCGGTTATTCCACGAACGC 59.356 55.000 0.00 0.00 36.08 4.84
1763 2314 1.135315 TCCTCGGTTATTCCACGAACG 60.135 52.381 0.00 0.00 36.08 3.95
1764 2315 2.660189 TCCTCGGTTATTCCACGAAC 57.340 50.000 0.00 0.00 36.08 3.95
1777 2332 3.692257 ATCTAGCATTCCATTCCTCGG 57.308 47.619 0.00 0.00 0.00 4.63
1778 2333 4.212847 CACAATCTAGCATTCCATTCCTCG 59.787 45.833 0.00 0.00 0.00 4.63
1781 2336 4.024556 CGACACAATCTAGCATTCCATTCC 60.025 45.833 0.00 0.00 0.00 3.01
1812 2368 2.897271 TGTCCTGTTACCCATTGCAT 57.103 45.000 0.00 0.00 0.00 3.96
1826 2382 6.463995 TTCTTTTTGTATGTGCTTTGTCCT 57.536 33.333 0.00 0.00 0.00 3.85
1829 2385 7.771183 TCTCTTTCTTTTTGTATGTGCTTTGT 58.229 30.769 0.00 0.00 0.00 2.83
1830 2386 8.633075 TTCTCTTTCTTTTTGTATGTGCTTTG 57.367 30.769 0.00 0.00 0.00 2.77
1831 2387 9.087424 GTTTCTCTTTCTTTTTGTATGTGCTTT 57.913 29.630 0.00 0.00 0.00 3.51
1834 2390 7.985634 TGTTTCTCTTTCTTTTTGTATGTGC 57.014 32.000 0.00 0.00 0.00 4.57
1835 2391 8.534778 GCTTGTTTCTCTTTCTTTTTGTATGTG 58.465 33.333 0.00 0.00 0.00 3.21
1836 2392 8.250332 TGCTTGTTTCTCTTTCTTTTTGTATGT 58.750 29.630 0.00 0.00 0.00 2.29
1837 2393 8.633075 TGCTTGTTTCTCTTTCTTTTTGTATG 57.367 30.769 0.00 0.00 0.00 2.39
1840 2396 6.473455 CGATGCTTGTTTCTCTTTCTTTTTGT 59.527 34.615 0.00 0.00 0.00 2.83
1841 2397 6.560983 GCGATGCTTGTTTCTCTTTCTTTTTG 60.561 38.462 0.00 0.00 0.00 2.44
1842 2398 5.460091 GCGATGCTTGTTTCTCTTTCTTTTT 59.540 36.000 0.00 0.00 0.00 1.94
1843 2399 4.978580 GCGATGCTTGTTTCTCTTTCTTTT 59.021 37.500 0.00 0.00 0.00 2.27
1844 2400 4.276926 AGCGATGCTTGTTTCTCTTTCTTT 59.723 37.500 0.00 0.00 33.89 2.52
1845 2401 3.817647 AGCGATGCTTGTTTCTCTTTCTT 59.182 39.130 0.00 0.00 33.89 2.52
1847 2403 3.820777 AGCGATGCTTGTTTCTCTTTC 57.179 42.857 0.00 0.00 33.89 2.62
1851 2438 5.103000 TCTTACTAGCGATGCTTGTTTCTC 58.897 41.667 10.85 0.00 41.25 2.87
1912 2499 5.548056 ACCTAGTTCTGGAGATCCTCAAAAA 59.452 40.000 0.00 0.00 36.82 1.94
1913 2500 5.094387 ACCTAGTTCTGGAGATCCTCAAAA 58.906 41.667 0.00 0.00 36.82 2.44
1914 2501 4.689062 ACCTAGTTCTGGAGATCCTCAAA 58.311 43.478 0.00 0.00 36.82 2.69
1915 2502 4.338795 ACCTAGTTCTGGAGATCCTCAA 57.661 45.455 0.00 0.00 36.82 3.02
1916 2503 4.690261 GCTACCTAGTTCTGGAGATCCTCA 60.690 50.000 0.00 0.00 36.82 3.86
1917 2504 3.824443 GCTACCTAGTTCTGGAGATCCTC 59.176 52.174 0.00 0.00 36.82 3.71
1918 2505 3.465588 AGCTACCTAGTTCTGGAGATCCT 59.534 47.826 0.00 0.00 36.82 3.24
1919 2506 3.572255 CAGCTACCTAGTTCTGGAGATCC 59.428 52.174 0.00 0.00 0.00 3.36
1920 2507 4.211920 ACAGCTACCTAGTTCTGGAGATC 58.788 47.826 0.00 0.00 0.00 2.75
1921 2508 4.258457 ACAGCTACCTAGTTCTGGAGAT 57.742 45.455 0.00 0.00 0.00 2.75
1922 2509 3.741245 ACAGCTACCTAGTTCTGGAGA 57.259 47.619 0.00 0.00 0.00 3.71
1923 2510 6.096987 TCAAATACAGCTACCTAGTTCTGGAG 59.903 42.308 0.00 0.00 0.00 3.86
1924 2511 5.955959 TCAAATACAGCTACCTAGTTCTGGA 59.044 40.000 0.00 0.00 0.00 3.86
1925 2512 6.222038 TCAAATACAGCTACCTAGTTCTGG 57.778 41.667 0.00 0.00 0.00 3.86
1926 2513 7.602644 TGTTTCAAATACAGCTACCTAGTTCTG 59.397 37.037 0.00 0.00 0.00 3.02
1927 2514 7.676947 TGTTTCAAATACAGCTACCTAGTTCT 58.323 34.615 0.00 0.00 0.00 3.01
1928 2515 7.900782 TGTTTCAAATACAGCTACCTAGTTC 57.099 36.000 0.00 0.00 0.00 3.01
1929 2516 7.937394 AGTTGTTTCAAATACAGCTACCTAGTT 59.063 33.333 0.00 0.00 35.65 2.24
1930 2517 7.387948 CAGTTGTTTCAAATACAGCTACCTAGT 59.612 37.037 0.00 0.00 35.28 2.57
1931 2518 7.602644 TCAGTTGTTTCAAATACAGCTACCTAG 59.397 37.037 0.00 0.00 35.28 3.02
1932 2519 7.446769 TCAGTTGTTTCAAATACAGCTACCTA 58.553 34.615 0.00 0.00 35.28 3.08
1933 2520 6.296026 TCAGTTGTTTCAAATACAGCTACCT 58.704 36.000 0.00 0.00 35.28 3.08
1934 2521 6.554334 TCAGTTGTTTCAAATACAGCTACC 57.446 37.500 0.00 0.00 35.28 3.18
1935 2522 6.080406 GCTCAGTTGTTTCAAATACAGCTAC 58.920 40.000 0.00 0.00 35.28 3.58
1936 2523 5.107104 CGCTCAGTTGTTTCAAATACAGCTA 60.107 40.000 0.00 0.00 35.28 3.32
1937 2524 4.319766 CGCTCAGTTGTTTCAAATACAGCT 60.320 41.667 9.58 0.00 37.52 4.24
1938 2525 3.908382 CGCTCAGTTGTTTCAAATACAGC 59.092 43.478 0.00 0.00 0.00 4.40
1939 2526 5.342806 TCGCTCAGTTGTTTCAAATACAG 57.657 39.130 0.00 0.00 0.00 2.74
1975 2562 1.098050 CCTGGGTTAGTGCAATGCTC 58.902 55.000 6.82 2.32 0.00 4.26
1977 2564 0.811281 GACCTGGGTTAGTGCAATGC 59.189 55.000 0.00 0.00 0.00 3.56
1978 2565 1.271871 TGGACCTGGGTTAGTGCAATG 60.272 52.381 0.00 0.00 30.84 2.82
1980 2567 0.400213 CTGGACCTGGGTTAGTGCAA 59.600 55.000 0.00 0.00 33.71 4.08
1985 2572 1.604378 CCAGCTGGACCTGGGTTAG 59.396 63.158 29.88 0.00 46.93 2.34
2024 2611 7.316640 ACTCTAATGCAATATCTATGGACGTC 58.683 38.462 7.13 7.13 0.00 4.34
2025 2612 7.233389 ACTCTAATGCAATATCTATGGACGT 57.767 36.000 0.00 0.00 0.00 4.34
2026 2613 9.457110 GATACTCTAATGCAATATCTATGGACG 57.543 37.037 0.00 0.00 0.00 4.79
2029 2616 9.979578 GGAGATACTCTAATGCAATATCTATGG 57.020 37.037 0.00 0.00 33.70 2.74
2033 2620 8.874156 TGTTGGAGATACTCTAATGCAATATCT 58.126 33.333 0.00 0.00 33.81 1.98
2034 2621 9.664332 ATGTTGGAGATACTCTAATGCAATATC 57.336 33.333 0.00 0.00 33.81 1.63
2037 2624 9.851686 TTAATGTTGGAGATACTCTAATGCAAT 57.148 29.630 0.00 0.00 33.81 3.56
2038 2625 9.109393 GTTAATGTTGGAGATACTCTAATGCAA 57.891 33.333 0.00 0.00 33.81 4.08
2039 2626 7.715249 GGTTAATGTTGGAGATACTCTAATGCA 59.285 37.037 0.00 0.00 33.81 3.96
2040 2627 7.934120 AGGTTAATGTTGGAGATACTCTAATGC 59.066 37.037 0.00 0.00 33.81 3.56
2041 2628 9.482627 GAGGTTAATGTTGGAGATACTCTAATG 57.517 37.037 0.00 0.00 33.81 1.90
2042 2629 9.440761 AGAGGTTAATGTTGGAGATACTCTAAT 57.559 33.333 0.00 0.00 33.81 1.73
2043 2630 8.840200 AGAGGTTAATGTTGGAGATACTCTAA 57.160 34.615 0.00 0.00 30.54 2.10
2044 2631 9.931698 TTAGAGGTTAATGTTGGAGATACTCTA 57.068 33.333 0.00 0.00 33.97 2.43
2045 2632 8.840200 TTAGAGGTTAATGTTGGAGATACTCT 57.160 34.615 0.00 0.00 35.87 3.24
2046 2633 8.915036 TCTTAGAGGTTAATGTTGGAGATACTC 58.085 37.037 0.00 0.00 0.00 2.59
2047 2634 8.697292 GTCTTAGAGGTTAATGTTGGAGATACT 58.303 37.037 0.00 0.00 0.00 2.12
2048 2635 7.648510 CGTCTTAGAGGTTAATGTTGGAGATAC 59.351 40.741 0.00 0.00 0.00 2.24
2049 2636 7.201884 CCGTCTTAGAGGTTAATGTTGGAGATA 60.202 40.741 1.20 0.00 0.00 1.98
2050 2637 6.407074 CCGTCTTAGAGGTTAATGTTGGAGAT 60.407 42.308 1.20 0.00 0.00 2.75
2051 2638 5.105473 CCGTCTTAGAGGTTAATGTTGGAGA 60.105 44.000 1.20 0.00 0.00 3.71
2052 2639 5.109903 CCGTCTTAGAGGTTAATGTTGGAG 58.890 45.833 1.20 0.00 0.00 3.86
2053 2640 4.081309 CCCGTCTTAGAGGTTAATGTTGGA 60.081 45.833 1.20 0.00 0.00 3.53
2054 2641 4.189231 CCCGTCTTAGAGGTTAATGTTGG 58.811 47.826 1.20 0.00 0.00 3.77
2055 2642 3.621715 GCCCGTCTTAGAGGTTAATGTTG 59.378 47.826 1.20 0.00 0.00 3.33
2056 2643 3.262405 TGCCCGTCTTAGAGGTTAATGTT 59.738 43.478 1.20 0.00 0.00 2.71
2057 2644 2.835764 TGCCCGTCTTAGAGGTTAATGT 59.164 45.455 1.20 0.00 0.00 2.71
2058 2645 3.536956 TGCCCGTCTTAGAGGTTAATG 57.463 47.619 1.20 0.00 0.00 1.90
2059 2646 4.080526 ACAATGCCCGTCTTAGAGGTTAAT 60.081 41.667 1.20 0.00 0.00 1.40
2060 2647 3.262405 ACAATGCCCGTCTTAGAGGTTAA 59.738 43.478 1.20 0.00 0.00 2.01
2061 2648 2.835764 ACAATGCCCGTCTTAGAGGTTA 59.164 45.455 1.20 0.00 0.00 2.85
2062 2649 1.628846 ACAATGCCCGTCTTAGAGGTT 59.371 47.619 1.20 0.00 0.00 3.50
2063 2650 1.276622 ACAATGCCCGTCTTAGAGGT 58.723 50.000 1.20 0.00 0.00 3.85
2064 2651 3.753294 ATACAATGCCCGTCTTAGAGG 57.247 47.619 0.00 0.00 0.00 3.69
2065 2652 4.876107 ACAAATACAATGCCCGTCTTAGAG 59.124 41.667 0.00 0.00 0.00 2.43
2066 2653 4.839121 ACAAATACAATGCCCGTCTTAGA 58.161 39.130 0.00 0.00 0.00 2.10
2067 2654 4.035208 GGACAAATACAATGCCCGTCTTAG 59.965 45.833 0.00 0.00 0.00 2.18
2068 2655 3.942748 GGACAAATACAATGCCCGTCTTA 59.057 43.478 0.00 0.00 0.00 2.10
2069 2656 2.752903 GGACAAATACAATGCCCGTCTT 59.247 45.455 0.00 0.00 0.00 3.01
2070 2657 2.365582 GGACAAATACAATGCCCGTCT 58.634 47.619 0.00 0.00 0.00 4.18
2071 2658 1.063469 CGGACAAATACAATGCCCGTC 59.937 52.381 0.00 0.00 38.76 4.79
2072 2659 1.091537 CGGACAAATACAATGCCCGT 58.908 50.000 0.00 0.00 38.76 5.28
2073 2660 0.248458 GCGGACAAATACAATGCCCG 60.248 55.000 0.00 0.00 45.24 6.13
2074 2661 0.248458 CGCGGACAAATACAATGCCC 60.248 55.000 0.00 0.00 0.00 5.36
2075 2662 0.730265 TCGCGGACAAATACAATGCC 59.270 50.000 6.13 0.00 0.00 4.40
2076 2663 2.535934 TTCGCGGACAAATACAATGC 57.464 45.000 6.13 0.00 0.00 3.56
2077 2664 4.657055 TGATTTCGCGGACAAATACAATG 58.343 39.130 6.13 0.00 0.00 2.82
2078 2665 4.955925 TGATTTCGCGGACAAATACAAT 57.044 36.364 6.13 0.00 0.00 2.71
2079 2666 4.438065 CCATGATTTCGCGGACAAATACAA 60.438 41.667 6.13 0.00 0.00 2.41
2080 2667 3.064682 CCATGATTTCGCGGACAAATACA 59.935 43.478 6.13 6.35 0.00 2.29
2081 2668 3.548014 CCCATGATTTCGCGGACAAATAC 60.548 47.826 6.13 0.95 0.00 1.89
2082 2669 2.616376 CCCATGATTTCGCGGACAAATA 59.384 45.455 6.13 0.00 0.00 1.40
2083 2670 1.405105 CCCATGATTTCGCGGACAAAT 59.595 47.619 6.13 4.93 0.00 2.32
2084 2671 0.808125 CCCATGATTTCGCGGACAAA 59.192 50.000 6.13 0.00 0.00 2.83
2085 2672 0.035915 TCCCATGATTTCGCGGACAA 60.036 50.000 6.13 0.00 0.00 3.18
2086 2673 0.035915 TTCCCATGATTTCGCGGACA 60.036 50.000 6.13 1.84 0.00 4.02
2087 2674 0.657840 CTTCCCATGATTTCGCGGAC 59.342 55.000 6.13 0.00 0.00 4.79
2088 2675 0.539518 TCTTCCCATGATTTCGCGGA 59.460 50.000 6.13 0.00 0.00 5.54
2089 2676 0.657840 GTCTTCCCATGATTTCGCGG 59.342 55.000 6.13 0.00 0.00 6.46
2090 2677 1.368641 TGTCTTCCCATGATTTCGCG 58.631 50.000 0.00 0.00 0.00 5.87
2091 2678 3.191371 AGTTTGTCTTCCCATGATTTCGC 59.809 43.478 0.00 0.00 0.00 4.70
2092 2679 4.436050 CGAGTTTGTCTTCCCATGATTTCG 60.436 45.833 0.00 0.00 0.00 3.46
2093 2680 4.695455 TCGAGTTTGTCTTCCCATGATTTC 59.305 41.667 0.00 0.00 0.00 2.17
2094 2681 4.651778 TCGAGTTTGTCTTCCCATGATTT 58.348 39.130 0.00 0.00 0.00 2.17
2095 2682 4.256920 CTCGAGTTTGTCTTCCCATGATT 58.743 43.478 3.62 0.00 0.00 2.57
2096 2683 3.866651 CTCGAGTTTGTCTTCCCATGAT 58.133 45.455 3.62 0.00 0.00 2.45
2097 2684 2.612972 GCTCGAGTTTGTCTTCCCATGA 60.613 50.000 15.13 0.00 0.00 3.07
2098 2685 1.734465 GCTCGAGTTTGTCTTCCCATG 59.266 52.381 15.13 0.00 0.00 3.66
2099 2686 1.625818 AGCTCGAGTTTGTCTTCCCAT 59.374 47.619 15.13 0.00 0.00 4.00
2100 2687 1.000955 GAGCTCGAGTTTGTCTTCCCA 59.999 52.381 15.13 0.00 0.00 4.37
2101 2688 1.673329 GGAGCTCGAGTTTGTCTTCCC 60.673 57.143 15.13 0.00 0.00 3.97
2102 2689 1.000955 TGGAGCTCGAGTTTGTCTTCC 59.999 52.381 15.13 4.90 0.00 3.46
2103 2690 2.062519 GTGGAGCTCGAGTTTGTCTTC 58.937 52.381 15.13 1.14 0.00 2.87
2104 2691 1.412710 TGTGGAGCTCGAGTTTGTCTT 59.587 47.619 15.13 0.00 0.00 3.01
2105 2692 1.040646 TGTGGAGCTCGAGTTTGTCT 58.959 50.000 15.13 1.24 0.00 3.41
2106 2693 1.140816 GTGTGGAGCTCGAGTTTGTC 58.859 55.000 15.13 6.03 0.00 3.18
2107 2694 0.249911 GGTGTGGAGCTCGAGTTTGT 60.250 55.000 15.13 0.00 0.00 2.83
2108 2695 0.034059 AGGTGTGGAGCTCGAGTTTG 59.966 55.000 15.13 0.00 0.00 2.93
2109 2696 0.034059 CAGGTGTGGAGCTCGAGTTT 59.966 55.000 15.13 2.46 0.00 2.66
2110 2697 1.668294 CAGGTGTGGAGCTCGAGTT 59.332 57.895 15.13 8.18 0.00 3.01
2111 2698 2.936912 GCAGGTGTGGAGCTCGAGT 61.937 63.158 15.13 0.23 0.00 4.18
2112 2699 2.125753 GCAGGTGTGGAGCTCGAG 60.126 66.667 8.45 8.45 0.00 4.04
2113 2700 2.601666 AGCAGGTGTGGAGCTCGA 60.602 61.111 7.83 0.00 32.05 4.04
2114 2701 2.125753 GAGCAGGTGTGGAGCTCG 60.126 66.667 7.83 0.00 44.37 5.03
2116 2703 2.203907 AGGAGCAGGTGTGGAGCT 60.204 61.111 0.00 0.00 42.17 4.09
2117 2704 2.046507 CAGGAGCAGGTGTGGAGC 60.047 66.667 0.00 0.00 0.00 4.70
2118 2705 1.595882 CTCAGGAGCAGGTGTGGAG 59.404 63.158 0.00 0.00 0.00 3.86
2119 2706 3.797331 CTCAGGAGCAGGTGTGGA 58.203 61.111 0.00 0.00 0.00 4.02
2129 2716 1.901654 AAGCCTCAGCAGCTCAGGAG 61.902 60.000 18.29 8.92 40.49 3.69
2130 2717 1.917282 AAGCCTCAGCAGCTCAGGA 60.917 57.895 18.29 0.00 40.49 3.86
2131 2718 1.745864 CAAGCCTCAGCAGCTCAGG 60.746 63.158 8.29 8.29 40.49 3.86
2132 2719 0.741574 CTCAAGCCTCAGCAGCTCAG 60.742 60.000 0.00 0.00 40.49 3.35
2133 2720 1.190178 TCTCAAGCCTCAGCAGCTCA 61.190 55.000 0.00 0.00 40.49 4.26
2134 2721 0.460635 CTCTCAAGCCTCAGCAGCTC 60.461 60.000 0.00 0.00 40.49 4.09
2135 2722 1.597989 CTCTCAAGCCTCAGCAGCT 59.402 57.895 0.00 0.00 44.19 4.24
2136 2723 1.449956 CCTCTCAAGCCTCAGCAGC 60.450 63.158 0.00 0.00 43.56 5.25
2137 2724 0.612229 TTCCTCTCAAGCCTCAGCAG 59.388 55.000 0.00 0.00 43.56 4.24
2138 2725 0.612229 CTTCCTCTCAAGCCTCAGCA 59.388 55.000 0.00 0.00 43.56 4.41
2139 2726 0.744057 GCTTCCTCTCAAGCCTCAGC 60.744 60.000 0.00 0.00 42.68 4.26
2140 2727 3.457099 GCTTCCTCTCAAGCCTCAG 57.543 57.895 0.00 0.00 42.68 3.35
2152 2739 1.340795 CCTTCTGCAATGAGGCTTCCT 60.341 52.381 0.00 0.00 36.03 3.36
2153 2740 1.101331 CCTTCTGCAATGAGGCTTCC 58.899 55.000 0.00 0.00 34.04 3.46
2154 2741 1.101331 CCCTTCTGCAATGAGGCTTC 58.899 55.000 4.54 0.00 34.04 3.86
2155 2742 0.324091 CCCCTTCTGCAATGAGGCTT 60.324 55.000 4.54 0.00 34.04 4.35
2156 2743 1.305623 CCCCTTCTGCAATGAGGCT 59.694 57.895 4.54 0.00 34.04 4.58
2157 2744 1.755783 CCCCCTTCTGCAATGAGGC 60.756 63.158 4.54 0.00 0.00 4.70
2158 2745 1.755783 GCCCCCTTCTGCAATGAGG 60.756 63.158 3.31 3.31 0.00 3.86
2159 2746 2.117156 CGCCCCCTTCTGCAATGAG 61.117 63.158 0.00 0.00 0.00 2.90
2160 2747 1.925285 ATCGCCCCCTTCTGCAATGA 61.925 55.000 0.00 0.00 0.00 2.57
2161 2748 1.454479 ATCGCCCCCTTCTGCAATG 60.454 57.895 0.00 0.00 0.00 2.82
2162 2749 1.454479 CATCGCCCCCTTCTGCAAT 60.454 57.895 0.00 0.00 0.00 3.56
2163 2750 2.045045 CATCGCCCCCTTCTGCAA 60.045 61.111 0.00 0.00 0.00 4.08
2164 2751 3.329542 GACATCGCCCCCTTCTGCA 62.330 63.158 0.00 0.00 0.00 4.41
2165 2752 2.514824 GACATCGCCCCCTTCTGC 60.515 66.667 0.00 0.00 0.00 4.26
2166 2753 1.153289 CTGACATCGCCCCCTTCTG 60.153 63.158 0.00 0.00 0.00 3.02
2167 2754 3.036429 GCTGACATCGCCCCCTTCT 62.036 63.158 0.00 0.00 0.00 2.85
2168 2755 2.514824 GCTGACATCGCCCCCTTC 60.515 66.667 0.00 0.00 0.00 3.46
2169 2756 2.615227 GATGCTGACATCGCCCCCTT 62.615 60.000 0.00 0.00 43.15 3.95
2170 2757 3.092511 ATGCTGACATCGCCCCCT 61.093 61.111 0.00 0.00 0.00 4.79
2171 2758 2.592861 GATGCTGACATCGCCCCC 60.593 66.667 0.00 0.00 43.15 5.40
2178 2765 2.302445 GCTCTATCAGGGATGCTGACAT 59.698 50.000 0.00 0.00 39.98 3.06
2179 2766 1.690893 GCTCTATCAGGGATGCTGACA 59.309 52.381 0.00 0.00 33.29 3.58
2180 2767 1.690893 TGCTCTATCAGGGATGCTGAC 59.309 52.381 0.00 0.00 33.29 3.51
2181 2768 2.092598 TGCTCTATCAGGGATGCTGA 57.907 50.000 0.00 0.00 35.13 4.26
2182 2769 2.492012 GTTGCTCTATCAGGGATGCTG 58.508 52.381 0.00 0.00 0.00 4.41
2183 2770 1.419387 GGTTGCTCTATCAGGGATGCT 59.581 52.381 0.00 0.00 0.00 3.79
2184 2771 1.544314 GGGTTGCTCTATCAGGGATGC 60.544 57.143 0.00 0.00 0.00 3.91
2185 2772 2.053244 AGGGTTGCTCTATCAGGGATG 58.947 52.381 0.00 0.00 0.00 3.51
2186 2773 2.503869 AGGGTTGCTCTATCAGGGAT 57.496 50.000 0.00 0.00 0.00 3.85
2187 2774 2.247635 AGTAGGGTTGCTCTATCAGGGA 59.752 50.000 0.00 0.00 0.00 4.20
2188 2775 2.683768 AGTAGGGTTGCTCTATCAGGG 58.316 52.381 0.00 0.00 0.00 4.45
2189 2776 5.329399 AGATAGTAGGGTTGCTCTATCAGG 58.671 45.833 11.73 0.00 40.34 3.86
2190 2777 7.120579 CACTAGATAGTAGGGTTGCTCTATCAG 59.879 44.444 0.00 9.57 40.34 2.90
2191 2778 6.943146 CACTAGATAGTAGGGTTGCTCTATCA 59.057 42.308 0.00 1.04 40.34 2.15
2192 2779 7.120138 GTCACTAGATAGTAGGGTTGCTCTATC 59.880 44.444 0.00 0.00 39.05 2.08
2193 2780 6.943718 GTCACTAGATAGTAGGGTTGCTCTAT 59.056 42.308 0.00 0.00 34.13 1.98
2194 2781 6.297582 GTCACTAGATAGTAGGGTTGCTCTA 58.702 44.000 0.00 0.00 34.13 2.43
2195 2782 5.134661 GTCACTAGATAGTAGGGTTGCTCT 58.865 45.833 0.00 0.00 34.13 4.09
2196 2783 4.278919 GGTCACTAGATAGTAGGGTTGCTC 59.721 50.000 0.00 0.00 34.13 4.26
2197 2784 4.216708 GGTCACTAGATAGTAGGGTTGCT 58.783 47.826 0.00 0.00 34.13 3.91
2198 2785 3.958798 TGGTCACTAGATAGTAGGGTTGC 59.041 47.826 0.00 0.00 34.13 4.17
2199 2786 5.892119 TCTTGGTCACTAGATAGTAGGGTTG 59.108 44.000 0.00 0.00 34.13 3.77
2200 2787 5.892686 GTCTTGGTCACTAGATAGTAGGGTT 59.107 44.000 0.00 0.00 34.13 4.11
2201 2788 5.044328 TGTCTTGGTCACTAGATAGTAGGGT 60.044 44.000 0.00 0.00 34.13 4.34
2202 2789 5.446860 TGTCTTGGTCACTAGATAGTAGGG 58.553 45.833 0.00 0.00 34.13 3.53
2203 2790 6.603997 AGTTGTCTTGGTCACTAGATAGTAGG 59.396 42.308 0.00 0.00 34.13 3.18
2204 2791 7.466185 CGAGTTGTCTTGGTCACTAGATAGTAG 60.466 44.444 0.00 0.00 34.13 2.57
2205 2792 6.315642 CGAGTTGTCTTGGTCACTAGATAGTA 59.684 42.308 0.00 0.00 34.13 1.82
2206 2793 5.124138 CGAGTTGTCTTGGTCACTAGATAGT 59.876 44.000 0.00 0.00 36.90 2.12
2207 2794 5.124138 ACGAGTTGTCTTGGTCACTAGATAG 59.876 44.000 0.00 0.00 31.38 2.08
2208 2795 5.008331 ACGAGTTGTCTTGGTCACTAGATA 58.992 41.667 0.00 0.00 31.38 1.98
2209 2796 3.827302 ACGAGTTGTCTTGGTCACTAGAT 59.173 43.478 0.00 0.00 31.38 1.98
2210 2797 3.220110 ACGAGTTGTCTTGGTCACTAGA 58.780 45.455 0.00 0.00 0.00 2.43
2211 2798 3.644884 ACGAGTTGTCTTGGTCACTAG 57.355 47.619 0.00 0.00 0.00 2.57
2212 2799 3.713288 CAACGAGTTGTCTTGGTCACTA 58.287 45.455 7.74 0.00 35.92 2.74
2213 2800 2.550978 CAACGAGTTGTCTTGGTCACT 58.449 47.619 7.74 0.00 35.92 3.41
2214 2801 1.003866 GCAACGAGTTGTCTTGGTCAC 60.004 52.381 16.14 0.00 42.31 3.67
2215 2802 1.295792 GCAACGAGTTGTCTTGGTCA 58.704 50.000 16.14 0.00 42.31 4.02
2216 2803 0.232303 CGCAACGAGTTGTCTTGGTC 59.768 55.000 16.14 0.00 42.31 4.02
2217 2804 0.179094 TCGCAACGAGTTGTCTTGGT 60.179 50.000 16.14 0.00 42.31 3.67
2218 2805 2.600388 TCGCAACGAGTTGTCTTGG 58.400 52.632 16.14 3.29 42.31 3.61
2228 2815 2.096980 AGACGATCATAACTCGCAACGA 59.903 45.455 0.00 0.00 39.71 3.85
2229 2816 2.451132 AGACGATCATAACTCGCAACG 58.549 47.619 0.00 0.00 39.71 4.10
2230 2817 3.483922 CAGAGACGATCATAACTCGCAAC 59.516 47.826 0.00 0.00 39.71 4.17
2231 2818 3.695816 CAGAGACGATCATAACTCGCAA 58.304 45.455 0.00 0.00 39.71 4.85
2232 2819 2.541794 GCAGAGACGATCATAACTCGCA 60.542 50.000 0.00 0.00 39.71 5.10
2233 2820 2.047769 GCAGAGACGATCATAACTCGC 58.952 52.381 0.00 0.00 39.71 5.03
2234 2821 3.340337 TGCAGAGACGATCATAACTCG 57.660 47.619 0.00 0.00 41.77 4.18
2235 2822 4.047822 CCTTGCAGAGACGATCATAACTC 58.952 47.826 0.00 0.00 0.00 3.01
2236 2823 3.739519 GCCTTGCAGAGACGATCATAACT 60.740 47.826 0.00 0.00 0.00 2.24
2237 2824 2.541762 GCCTTGCAGAGACGATCATAAC 59.458 50.000 0.00 0.00 0.00 1.89
2238 2825 2.432146 AGCCTTGCAGAGACGATCATAA 59.568 45.455 0.00 0.00 0.00 1.90
2239 2826 2.034878 AGCCTTGCAGAGACGATCATA 58.965 47.619 0.00 0.00 0.00 2.15
2240 2827 0.829333 AGCCTTGCAGAGACGATCAT 59.171 50.000 0.00 0.00 0.00 2.45
2241 2828 1.474330 TAGCCTTGCAGAGACGATCA 58.526 50.000 0.00 0.00 0.00 2.92
2242 2829 2.197577 GTTAGCCTTGCAGAGACGATC 58.802 52.381 0.00 0.00 0.00 3.69
2243 2830 1.134670 GGTTAGCCTTGCAGAGACGAT 60.135 52.381 0.00 0.00 0.00 3.73
2244 2831 0.246635 GGTTAGCCTTGCAGAGACGA 59.753 55.000 0.00 0.00 0.00 4.20
2245 2832 0.037326 TGGTTAGCCTTGCAGAGACG 60.037 55.000 0.00 0.00 35.27 4.18
2246 2833 1.677217 CCTGGTTAGCCTTGCAGAGAC 60.677 57.143 0.00 0.00 35.27 3.36
2247 2834 0.615331 CCTGGTTAGCCTTGCAGAGA 59.385 55.000 0.00 0.00 35.27 3.10
2248 2835 0.393537 CCCTGGTTAGCCTTGCAGAG 60.394 60.000 0.00 0.00 35.27 3.35
2249 2836 1.133809 ACCCTGGTTAGCCTTGCAGA 61.134 55.000 0.00 0.00 35.27 4.26
2250 2837 0.678048 GACCCTGGTTAGCCTTGCAG 60.678 60.000 0.00 0.00 35.27 4.41
2251 2838 1.378762 GACCCTGGTTAGCCTTGCA 59.621 57.895 0.00 0.00 35.27 4.08
2252 2839 0.960861 GTGACCCTGGTTAGCCTTGC 60.961 60.000 0.00 0.00 35.27 4.01
2253 2840 0.693049 AGTGACCCTGGTTAGCCTTG 59.307 55.000 0.00 0.00 35.27 3.61
2254 2841 0.693049 CAGTGACCCTGGTTAGCCTT 59.307 55.000 0.00 0.00 37.54 4.35
2255 2842 2.377136 CAGTGACCCTGGTTAGCCT 58.623 57.895 0.00 0.00 37.54 4.58
2263 2850 0.325296 TAGTAGGCCCAGTGACCCTG 60.325 60.000 0.00 0.00 41.15 4.45
2264 2851 0.032017 CTAGTAGGCCCAGTGACCCT 60.032 60.000 0.00 6.74 0.00 4.34
2265 2852 1.049289 CCTAGTAGGCCCAGTGACCC 61.049 65.000 2.46 0.00 0.00 4.46
2266 2853 0.325390 ACCTAGTAGGCCCAGTGACC 60.325 60.000 16.61 0.00 39.63 4.02
2267 2854 0.824759 CACCTAGTAGGCCCAGTGAC 59.175 60.000 16.61 0.00 39.63 3.67
2268 2855 0.412244 ACACCTAGTAGGCCCAGTGA 59.588 55.000 16.61 0.00 39.63 3.41
2269 2856 0.537188 CACACCTAGTAGGCCCAGTG 59.463 60.000 16.61 14.89 39.63 3.66
2270 2857 1.265454 GCACACCTAGTAGGCCCAGT 61.265 60.000 16.61 7.19 39.63 4.00
2271 2858 1.522569 GCACACCTAGTAGGCCCAG 59.477 63.158 16.61 6.56 39.63 4.45
2272 2859 2.355986 CGCACACCTAGTAGGCCCA 61.356 63.158 16.61 0.00 39.63 5.36
2273 2860 1.610554 TTCGCACACCTAGTAGGCCC 61.611 60.000 16.61 1.40 39.63 5.80
2274 2861 0.179108 CTTCGCACACCTAGTAGGCC 60.179 60.000 16.61 0.00 39.63 5.19
2275 2862 0.179108 CCTTCGCACACCTAGTAGGC 60.179 60.000 16.61 1.05 39.63 3.93
2276 2863 1.134560 GTCCTTCGCACACCTAGTAGG 59.865 57.143 15.09 15.09 42.49 3.18
2277 2864 1.134560 GGTCCTTCGCACACCTAGTAG 59.865 57.143 0.00 0.00 0.00 2.57
2278 2865 1.180029 GGTCCTTCGCACACCTAGTA 58.820 55.000 0.00 0.00 0.00 1.82
2279 2866 1.874345 CGGTCCTTCGCACACCTAGT 61.874 60.000 0.00 0.00 0.00 2.57
2280 2867 1.153823 CGGTCCTTCGCACACCTAG 60.154 63.158 0.00 0.00 0.00 3.02
2281 2868 1.604308 TCGGTCCTTCGCACACCTA 60.604 57.895 0.00 0.00 0.00 3.08
2282 2869 2.915659 TCGGTCCTTCGCACACCT 60.916 61.111 0.00 0.00 0.00 4.00
2283 2870 2.737376 GTCGGTCCTTCGCACACC 60.737 66.667 0.00 0.00 0.00 4.16
2284 2871 2.737376 GGTCGGTCCTTCGCACAC 60.737 66.667 0.00 0.00 0.00 3.82
2285 2872 3.998672 GGGTCGGTCCTTCGCACA 61.999 66.667 0.00 0.00 36.25 4.57
2286 2873 3.310860 ATGGGTCGGTCCTTCGCAC 62.311 63.158 2.94 0.00 36.25 5.34
2287 2874 3.000819 ATGGGTCGGTCCTTCGCA 61.001 61.111 3.28 3.28 36.25 5.10
2288 2875 2.202892 GATGGGTCGGTCCTTCGC 60.203 66.667 0.00 0.00 36.25 4.70
2289 2876 2.017559 GAGGATGGGTCGGTCCTTCG 62.018 65.000 0.00 0.00 44.70 3.79
2290 2877 0.976073 TGAGGATGGGTCGGTCCTTC 60.976 60.000 0.00 3.44 44.70 3.46
2291 2878 0.546747 TTGAGGATGGGTCGGTCCTT 60.547 55.000 0.00 0.00 44.70 3.36
2293 2880 1.221021 GTTGAGGATGGGTCGGTCC 59.779 63.158 0.00 0.00 34.64 4.46
2294 2881 0.391263 GTGTTGAGGATGGGTCGGTC 60.391 60.000 0.00 0.00 0.00 4.79
2295 2882 0.836400 AGTGTTGAGGATGGGTCGGT 60.836 55.000 0.00 0.00 0.00 4.69
2296 2883 1.134788 GTAGTGTTGAGGATGGGTCGG 60.135 57.143 0.00 0.00 0.00 4.79
2297 2884 1.825474 AGTAGTGTTGAGGATGGGTCG 59.175 52.381 0.00 0.00 0.00 4.79
2298 2885 5.416271 TTTAGTAGTGTTGAGGATGGGTC 57.584 43.478 0.00 0.00 0.00 4.46
2299 2886 5.745227 CATTTAGTAGTGTTGAGGATGGGT 58.255 41.667 0.00 0.00 0.00 4.51
2300 2887 4.576463 GCATTTAGTAGTGTTGAGGATGGG 59.424 45.833 0.00 0.00 0.00 4.00
2301 2888 4.576463 GGCATTTAGTAGTGTTGAGGATGG 59.424 45.833 0.00 0.00 0.00 3.51
2302 2889 5.185454 TGGCATTTAGTAGTGTTGAGGATG 58.815 41.667 0.00 0.00 0.00 3.51
2303 2890 5.435686 TGGCATTTAGTAGTGTTGAGGAT 57.564 39.130 0.00 0.00 0.00 3.24
2304 2891 4.901197 TGGCATTTAGTAGTGTTGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
2305 2892 5.003804 AGTTGGCATTTAGTAGTGTTGAGG 58.996 41.667 0.00 0.00 0.00 3.86
2306 2893 5.617751 GCAGTTGGCATTTAGTAGTGTTGAG 60.618 44.000 0.00 0.00 43.97 3.02
2307 2894 4.215399 GCAGTTGGCATTTAGTAGTGTTGA 59.785 41.667 0.00 0.00 43.97 3.18
2308 2895 4.475944 GCAGTTGGCATTTAGTAGTGTTG 58.524 43.478 0.00 0.00 43.97 3.33
2309 2896 4.766404 GCAGTTGGCATTTAGTAGTGTT 57.234 40.909 0.00 0.00 43.97 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.