Multiple sequence alignment - TraesCS4A01G250100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G250100 chr4A 100.000 2453 0 0 1 2453 560999512 560997060 0.000000e+00 4530.0
1 TraesCS4A01G250100 chr4A 78.601 486 82 20 888 1366 561106163 561105693 3.960000e-78 302.0
2 TraesCS4A01G250100 chr4D 82.955 1279 94 47 948 2157 39366066 39364843 0.000000e+00 1040.0
3 TraesCS4A01G250100 chr4D 91.103 281 20 5 2175 2453 39364368 39364091 2.300000e-100 375.0
4 TraesCS4A01G250100 chr4D 84.198 405 37 13 1 381 39366939 39366538 3.850000e-98 368.0
5 TraesCS4A01G250100 chr4D 79.113 541 83 24 833 1366 39273631 39274148 1.810000e-91 346.0
6 TraesCS4A01G250100 chr4D 74.834 604 121 21 5 589 274133308 274133899 6.780000e-61 244.0
7 TraesCS4A01G250100 chr4D 90.909 44 2 1 797 840 177494425 177494384 9.470000e-05 58.4
8 TraesCS4A01G250100 chr4B 91.709 398 29 4 2057 2453 57747040 57747434 1.280000e-152 549.0
9 TraesCS4A01G250100 chr4B 82.540 378 53 12 986 1361 57272071 57271705 1.090000e-83 320.0
10 TraesCS4A01G250100 chr4B 81.081 370 47 16 1017 1366 57529999 57530365 8.640000e-70 274.0
11 TraesCS4A01G250100 chr4B 74.387 734 112 34 52 771 57743476 57744147 6.780000e-61 244.0
12 TraesCS4A01G250100 chr4B 76.008 521 66 30 949 1435 57744310 57744805 5.310000e-52 215.0
13 TraesCS4A01G250100 chr1D 76.105 611 108 21 1 589 363058807 363058213 3.990000e-73 285.0
14 TraesCS4A01G250100 chr1D 94.737 38 2 0 797 834 251468276 251468239 2.630000e-05 60.2
15 TraesCS4A01G250100 chr1D 97.143 35 1 0 797 831 263307982 263308016 2.630000e-05 60.2
16 TraesCS4A01G250100 chr1A 74.426 610 118 24 2 589 371826331 371825738 6.820000e-56 228.0
17 TraesCS4A01G250100 chr1A 73.137 577 116 24 34 589 276937394 276937952 1.170000e-38 171.0
18 TraesCS4A01G250100 chr6D 74.088 521 102 22 44 541 347136457 347136967 1.500000e-42 183.0
19 TraesCS4A01G250100 chr6D 94.737 38 2 0 797 834 140998147 140998110 2.630000e-05 60.2
20 TraesCS4A01G250100 chr6D 94.737 38 2 0 797 834 265690383 265690346 2.630000e-05 60.2
21 TraesCS4A01G250100 chr5D 88.050 159 12 3 1 155 308169065 308169220 5.390000e-42 182.0
22 TraesCS4A01G250100 chr5D 73.221 534 103 28 68 575 89490227 89489708 9.080000e-35 158.0
23 TraesCS4A01G250100 chr2A 87.023 131 17 0 1236 1366 541387016 541386886 5.470000e-32 148.0
24 TraesCS4A01G250100 chr3A 73.523 457 78 29 31 461 1004351 1003912 1.530000e-27 134.0
25 TraesCS4A01G250100 chr6B 88.525 61 7 0 626 686 64227268 64227208 9.410000e-10 75.0
26 TraesCS4A01G250100 chr6B 90.741 54 5 0 631 684 497224494 497224547 3.380000e-09 73.1
27 TraesCS4A01G250100 chr6A 90.909 55 5 0 631 685 464519477 464519423 9.410000e-10 75.0
28 TraesCS4A01G250100 chr6A 87.097 62 8 0 625 686 34975964 34975903 1.220000e-08 71.3
29 TraesCS4A01G250100 chr7B 97.368 38 1 0 799 836 718871692 718871655 5.660000e-07 65.8
30 TraesCS4A01G250100 chr3B 97.368 38 1 0 797 834 217038377 217038340 5.660000e-07 65.8
31 TraesCS4A01G250100 chr3D 97.222 36 1 0 796 831 341026278 341026313 7.320000e-06 62.1
32 TraesCS4A01G250100 chr1B 85.965 57 4 3 797 851 288805451 288805505 9.470000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G250100 chr4A 560997060 560999512 2452 True 4530.000000 4530 100.000000 1 2453 1 chr4A.!!$R1 2452
1 TraesCS4A01G250100 chr4D 39364091 39366939 2848 True 594.333333 1040 86.085333 1 2453 3 chr4D.!!$R2 2452
2 TraesCS4A01G250100 chr4D 39273631 39274148 517 False 346.000000 346 79.113000 833 1366 1 chr4D.!!$F1 533
3 TraesCS4A01G250100 chr4D 274133308 274133899 591 False 244.000000 244 74.834000 5 589 1 chr4D.!!$F2 584
4 TraesCS4A01G250100 chr4B 57743476 57747434 3958 False 336.000000 549 80.701333 52 2453 3 chr4B.!!$F2 2401
5 TraesCS4A01G250100 chr1D 363058213 363058807 594 True 285.000000 285 76.105000 1 589 1 chr1D.!!$R2 588
6 TraesCS4A01G250100 chr1A 371825738 371826331 593 True 228.000000 228 74.426000 2 589 1 chr1A.!!$R1 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
383 430 0.16923 GCTCGTCAGTGTCGATCTGT 59.831 55.0 12.74 0.0 36.73 3.41 F
811 877 0.24445 TCGTCCACGGCGAGTAATTT 59.756 50.0 16.62 0.0 40.29 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1348 1493 0.035739 TTTTGGGGCAGTCGTAGGTC 59.964 55.0 0.00 0.0 0.00 3.85 R
2160 3971 0.321346 TCAGCTGTTGATTCTGCCGA 59.679 50.0 14.67 0.0 33.76 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 70 6.763135 ACACATCAACTAGCATACTACCAATG 59.237 38.462 0.00 0.00 0.00 2.82
112 114 7.693934 ATCATTGCTGACATGGAAACAACTCA 61.694 38.462 0.00 0.00 37.96 3.41
126 128 6.183360 GGAAACAACTCATAGCATGCTACAAT 60.183 38.462 29.11 12.68 0.00 2.71
155 178 3.838317 ACCACTAGCTACCAGAACATCAA 59.162 43.478 0.00 0.00 0.00 2.57
178 201 9.987272 TCAAATTCTCACAGATCGATAATGTAT 57.013 29.630 13.69 3.76 0.00 2.29
210 247 3.005554 ACAGCTTATCACATGCTCACAC 58.994 45.455 0.00 0.00 35.55 3.82
215 252 4.260661 GCTTATCACATGCTCACACATCTG 60.261 45.833 0.00 0.00 0.00 2.90
220 257 2.026915 ACATGCTCACACATCTGGCTAA 60.027 45.455 0.00 0.00 0.00 3.09
225 262 3.005554 CTCACACATCTGGCTAAAGTGG 58.994 50.000 0.00 0.00 34.65 4.00
238 279 4.710865 GGCTAAAGTGGGTAAGTAGAGAGT 59.289 45.833 0.00 0.00 0.00 3.24
240 281 6.039605 GGCTAAAGTGGGTAAGTAGAGAGTAG 59.960 46.154 0.00 0.00 0.00 2.57
265 309 3.074412 GGTGATCGAACTCACAACCATT 58.926 45.455 18.27 0.00 45.95 3.16
333 380 1.908889 CGATTCATCGTCGACGTGAAA 59.091 47.619 35.88 28.04 44.74 2.69
354 401 1.136695 CGAGAGCCAGAGAAGAAGCAT 59.863 52.381 0.00 0.00 0.00 3.79
371 418 2.412323 ATCGCTTACCGGCTCGTCA 61.412 57.895 0.00 0.00 37.59 4.35
381 428 1.803943 GGCTCGTCAGTGTCGATCT 59.196 57.895 12.74 0.00 36.73 2.75
383 430 0.169230 GCTCGTCAGTGTCGATCTGT 59.831 55.000 12.74 0.00 36.73 3.41
386 433 1.398762 CGTCAGTGTCGATCTGTGCG 61.399 60.000 16.27 16.60 34.86 5.34
402 449 2.663196 CGGGAAGGGAAAGCTCGT 59.337 61.111 0.00 0.00 0.00 4.18
459 507 0.617820 AGGGTGGCTATATAGGGCGG 60.618 60.000 11.72 0.00 0.00 6.13
481 529 1.305046 AATCGACGGGAGGTGACCT 60.305 57.895 2.41 2.41 36.03 3.85
509 557 2.484264 CTCCCGTTGCTTTTTCGAAGAT 59.516 45.455 0.00 0.00 35.04 2.40
589 637 4.172512 ATCGCCTGAGCCTGGCTG 62.173 66.667 28.82 13.36 44.56 4.85
614 662 2.437895 GGGGGCTGAACTAACCGC 60.438 66.667 0.00 0.00 35.76 5.68
615 663 2.669240 GGGGCTGAACTAACCGCT 59.331 61.111 0.00 0.00 33.83 5.52
644 696 2.177016 AGCTGGGAGGTGGTTTAAGTTT 59.823 45.455 0.00 0.00 0.00 2.66
678 744 1.603678 CCAAACAGTGAATGCAGGCAC 60.604 52.381 12.41 12.41 35.30 5.01
685 751 0.758310 TGAATGCAGGCACCCAAACA 60.758 50.000 0.00 0.00 0.00 2.83
688 754 0.760189 ATGCAGGCACCCAAACAGTT 60.760 50.000 0.00 0.00 0.00 3.16
728 794 2.616510 GCCTAGTTGAACTCCATGCAGT 60.617 50.000 0.00 0.00 0.00 4.40
746 812 3.003897 GCAGTTAATCAAACACGTCCCAA 59.996 43.478 0.00 0.00 40.83 4.12
760 826 0.331278 TCCCAAATGGCCGAAGACAT 59.669 50.000 0.00 0.00 0.00 3.06
771 837 2.734492 GCCGAAGACATAAGCACGTACT 60.734 50.000 0.00 0.00 0.00 2.73
772 838 3.106672 CCGAAGACATAAGCACGTACTC 58.893 50.000 0.00 0.00 0.00 2.59
773 839 3.106672 CGAAGACATAAGCACGTACTCC 58.893 50.000 0.00 0.00 0.00 3.85
775 841 2.736347 AGACATAAGCACGTACTCCCT 58.264 47.619 0.00 0.00 0.00 4.20
776 842 2.688958 AGACATAAGCACGTACTCCCTC 59.311 50.000 0.00 0.00 0.00 4.30
777 843 1.404391 ACATAAGCACGTACTCCCTCG 59.596 52.381 0.00 0.00 0.00 4.63
778 844 1.404391 CATAAGCACGTACTCCCTCGT 59.596 52.381 0.00 0.00 40.99 4.18
782 848 0.523072 GCACGTACTCCCTCGTTACA 59.477 55.000 0.00 0.00 38.23 2.41
783 849 1.068333 GCACGTACTCCCTCGTTACAA 60.068 52.381 0.00 0.00 38.23 2.41
784 850 2.607771 GCACGTACTCCCTCGTTACAAA 60.608 50.000 0.00 0.00 38.23 2.83
785 851 3.841643 CACGTACTCCCTCGTTACAAAT 58.158 45.455 0.00 0.00 38.23 2.32
788 854 5.287035 CACGTACTCCCTCGTTACAAATTAC 59.713 44.000 0.00 0.00 38.23 1.89
789 855 5.183904 ACGTACTCCCTCGTTACAAATTACT 59.816 40.000 0.00 0.00 36.93 2.24
790 856 5.741040 CGTACTCCCTCGTTACAAATTACTC 59.259 44.000 0.00 0.00 0.00 2.59
793 859 4.737054 TCCCTCGTTACAAATTACTCGTC 58.263 43.478 0.00 0.00 0.00 4.20
794 860 3.545078 CCCTCGTTACAAATTACTCGTCG 59.455 47.826 0.00 0.00 0.00 5.12
795 861 4.161333 CCTCGTTACAAATTACTCGTCGT 58.839 43.478 0.00 0.00 0.00 4.34
796 862 4.261581 CCTCGTTACAAATTACTCGTCGTC 59.738 45.833 0.00 0.00 0.00 4.20
797 863 4.158384 TCGTTACAAATTACTCGTCGTCC 58.842 43.478 0.00 0.00 0.00 4.79
798 864 3.913763 CGTTACAAATTACTCGTCGTCCA 59.086 43.478 0.00 0.00 0.00 4.02
799 865 4.201428 CGTTACAAATTACTCGTCGTCCAC 60.201 45.833 0.00 0.00 0.00 4.02
808 874 2.562912 GTCGTCCACGGCGAGTAA 59.437 61.111 16.62 0.00 39.14 2.24
809 875 1.138247 GTCGTCCACGGCGAGTAAT 59.862 57.895 16.62 0.00 39.14 1.89
810 876 0.457337 GTCGTCCACGGCGAGTAATT 60.457 55.000 16.62 0.00 39.14 1.40
811 877 0.244450 TCGTCCACGGCGAGTAATTT 59.756 50.000 16.62 0.00 40.29 1.82
812 878 0.368907 CGTCCACGGCGAGTAATTTG 59.631 55.000 16.62 0.00 35.37 2.32
813 879 0.725117 GTCCACGGCGAGTAATTTGG 59.275 55.000 16.62 9.28 0.00 3.28
814 880 0.609151 TCCACGGCGAGTAATTTGGA 59.391 50.000 16.62 11.92 0.00 3.53
815 881 1.002201 TCCACGGCGAGTAATTTGGAA 59.998 47.619 16.62 0.00 0.00 3.53
816 882 1.129811 CCACGGCGAGTAATTTGGAAC 59.870 52.381 16.62 0.00 0.00 3.62
817 883 1.073177 ACGGCGAGTAATTTGGAACG 58.927 50.000 16.62 0.00 0.00 3.95
818 884 0.372334 CGGCGAGTAATTTGGAACGG 59.628 55.000 0.00 0.00 0.00 4.44
819 885 1.729284 GGCGAGTAATTTGGAACGGA 58.271 50.000 0.00 0.00 0.00 4.69
820 886 1.664151 GGCGAGTAATTTGGAACGGAG 59.336 52.381 0.00 0.00 0.00 4.63
821 887 1.664151 GCGAGTAATTTGGAACGGAGG 59.336 52.381 0.00 0.00 0.00 4.30
822 888 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
823 889 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
824 890 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
825 891 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
826 892 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
830 896 0.327924 TGGAACGGAGGGAGTACGTA 59.672 55.000 0.00 0.00 40.31 3.57
841 907 5.123661 GGAGGGAGTACGTATTACTATCAGC 59.876 48.000 0.00 0.00 41.48 4.26
875 941 3.663908 GTGATTTCGCGTCAAATCTCTG 58.336 45.455 24.81 0.00 41.54 3.35
911 977 1.593196 CGGCACAAAGTCAAAGAGGA 58.407 50.000 0.00 0.00 0.00 3.71
933 999 2.069273 GGCGGATCCGTAGATTCAATG 58.931 52.381 33.33 3.22 42.09 2.82
937 1003 3.990469 CGGATCCGTAGATTCAATGGAAG 59.010 47.826 26.35 0.00 35.68 3.46
941 1007 2.550978 CGTAGATTCAATGGAAGGCGT 58.449 47.619 0.00 0.00 36.25 5.68
942 1008 3.491964 CCGTAGATTCAATGGAAGGCGTA 60.492 47.826 0.00 0.00 36.25 4.42
943 1009 3.489785 CGTAGATTCAATGGAAGGCGTAC 59.510 47.826 0.00 0.00 36.25 3.67
945 1011 4.156455 AGATTCAATGGAAGGCGTACAT 57.844 40.909 0.00 0.00 36.25 2.29
946 1012 3.879295 AGATTCAATGGAAGGCGTACATG 59.121 43.478 0.00 0.00 36.25 3.21
959 1059 1.135083 CGTACATGTCCGGAGCTTCTT 60.135 52.381 3.06 0.00 0.00 2.52
1016 1120 1.353804 GCACGGACTCAAAACGCAA 59.646 52.632 0.00 0.00 0.00 4.85
1067 1188 3.459823 AGCTGTCGCTCACCTTCA 58.540 55.556 0.00 0.00 45.15 3.02
1087 1214 0.927767 TCCTCCTCCTCTCAGGTACC 59.072 60.000 2.73 2.73 36.53 3.34
1095 1222 1.344496 CCTCTCAGGTACCCCTCCATT 60.344 57.143 8.74 0.00 39.89 3.16
1154 1294 0.744874 TCTCTCCGGCACTTTATCCG 59.255 55.000 0.00 0.00 44.89 4.18
1160 1300 1.429463 CGGCACTTTATCCGGATAGC 58.571 55.000 22.88 21.26 41.82 2.97
1172 1317 2.227865 TCCGGATAGCTTTTTGTTGTGC 59.772 45.455 0.00 0.00 0.00 4.57
1381 1526 2.093235 CCCCAAAACCAAGTGCTGAAAA 60.093 45.455 0.00 0.00 0.00 2.29
1382 1527 3.197265 CCCAAAACCAAGTGCTGAAAAG 58.803 45.455 0.00 0.00 0.00 2.27
1383 1528 3.369366 CCCAAAACCAAGTGCTGAAAAGT 60.369 43.478 0.00 0.00 0.00 2.66
1384 1529 4.142049 CCCAAAACCAAGTGCTGAAAAGTA 60.142 41.667 0.00 0.00 0.00 2.24
1385 1530 4.803613 CCAAAACCAAGTGCTGAAAAGTAC 59.196 41.667 0.00 0.00 0.00 2.73
1386 1531 5.394115 CCAAAACCAAGTGCTGAAAAGTACT 60.394 40.000 0.00 0.00 36.32 2.73
1387 1532 4.900635 AACCAAGTGCTGAAAAGTACTG 57.099 40.909 0.00 0.00 35.03 2.74
1388 1533 2.618709 ACCAAGTGCTGAAAAGTACTGC 59.381 45.455 0.00 0.00 35.03 4.40
1422 1568 1.395573 CGTTCGTCGTGTTCTTCTTGC 60.396 52.381 0.00 0.00 34.52 4.01
1426 1572 2.095617 TCGTCGTGTTCTTCTTGCGATA 60.096 45.455 0.00 0.00 34.10 2.92
1438 1625 2.603110 TCTTGCGATATCGTGTTTGAGC 59.397 45.455 24.99 7.42 42.22 4.26
1439 1626 2.293677 TGCGATATCGTGTTTGAGCT 57.706 45.000 24.99 0.00 42.22 4.09
1440 1627 2.616960 TGCGATATCGTGTTTGAGCTT 58.383 42.857 24.99 0.00 42.22 3.74
1441 1628 2.348362 TGCGATATCGTGTTTGAGCTTG 59.652 45.455 24.99 0.00 42.22 4.01
1442 1629 2.603110 GCGATATCGTGTTTGAGCTTGA 59.397 45.455 24.99 0.00 42.22 3.02
1443 1630 3.302092 GCGATATCGTGTTTGAGCTTGAG 60.302 47.826 24.99 0.00 42.22 3.02
1470 1657 0.318955 AAGCGGCAATTGTGTCTTGC 60.319 50.000 7.40 0.00 46.47 4.01
1480 1667 4.924305 ATTGTGTCTTGCAACAACTGAT 57.076 36.364 3.88 0.00 0.00 2.90
1481 1668 6.207928 CAATTGTGTCTTGCAACAACTGATA 58.792 36.000 4.81 0.00 0.00 2.15
1482 1669 5.826601 TTGTGTCTTGCAACAACTGATAA 57.173 34.783 0.00 0.00 0.00 1.75
1483 1670 5.826601 TGTGTCTTGCAACAACTGATAAA 57.173 34.783 0.00 0.00 0.00 1.40
1484 1671 6.389830 TGTGTCTTGCAACAACTGATAAAT 57.610 33.333 0.00 0.00 0.00 1.40
1485 1672 6.207928 TGTGTCTTGCAACAACTGATAAATG 58.792 36.000 0.00 0.00 0.00 2.32
1507 1694 2.460757 ATGGAATGGCAAGTTTGTGC 57.539 45.000 0.00 0.00 44.14 4.57
1578 1926 0.655733 CGGAACTTGAACGCACTGTT 59.344 50.000 0.00 0.00 45.61 3.16
1647 2481 4.443978 ACCTTAACCATCCTCATCATGG 57.556 45.455 0.00 0.00 45.74 3.66
1648 2482 4.047166 ACCTTAACCATCCTCATCATGGA 58.953 43.478 5.70 0.00 43.32 3.41
1660 2494 3.944015 CTCATCATGGAGGAGTTGTTTCC 59.056 47.826 0.06 0.00 35.99 3.13
1678 2512 0.803768 CCGTTCTCTGGATCGTGCAG 60.804 60.000 0.00 1.17 37.15 4.41
1697 2531 1.071385 AGGGCTCATCGTGATTGGATC 59.929 52.381 0.00 0.00 0.00 3.36
1702 2536 3.681897 GCTCATCGTGATTGGATCCATAC 59.318 47.826 17.06 13.94 0.00 2.39
1710 2544 5.650543 GTGATTGGATCCATACAAAACACC 58.349 41.667 17.06 2.62 36.70 4.16
1718 2552 2.095263 CCATACAAAACACCGAGGCAAG 60.095 50.000 0.00 0.00 0.00 4.01
1743 2577 1.535204 AAGGGAAGGTTTGCGCCATG 61.535 55.000 4.18 0.00 0.00 3.66
1744 2578 2.275380 GGGAAGGTTTGCGCCATGT 61.275 57.895 4.18 0.00 0.00 3.21
1745 2579 1.080569 GGAAGGTTTGCGCCATGTG 60.081 57.895 4.18 0.00 0.00 3.21
1762 2596 2.279717 GCTGCGAGGATGCGATGA 60.280 61.111 0.00 0.00 37.81 2.92
1775 2609 1.344837 CGATGAACATGACGTGCCG 59.655 57.895 0.00 0.00 0.00 5.69
1793 2648 3.038417 GTCGAGCGTGCAACTGCT 61.038 61.111 8.91 8.91 46.21 4.24
1829 2684 1.817099 GGCTGCACCATCTTCCTCG 60.817 63.158 0.50 0.00 38.86 4.63
1858 2713 0.591170 ACGTGACGAAATGCCCTTTG 59.409 50.000 13.70 0.00 0.00 2.77
1863 2718 3.004315 GTGACGAAATGCCCTTTGAAGAA 59.996 43.478 0.00 0.00 0.00 2.52
1864 2719 3.004315 TGACGAAATGCCCTTTGAAGAAC 59.996 43.478 0.00 0.00 0.00 3.01
1865 2720 2.031157 ACGAAATGCCCTTTGAAGAACG 60.031 45.455 0.00 0.00 0.00 3.95
1867 2722 3.308530 GAAATGCCCTTTGAAGAACGTG 58.691 45.455 0.00 0.00 0.00 4.49
1868 2723 2.270352 ATGCCCTTTGAAGAACGTGA 57.730 45.000 0.00 0.00 0.00 4.35
1870 2725 0.591659 GCCCTTTGAAGAACGTGACC 59.408 55.000 0.00 0.00 0.00 4.02
1872 2727 1.602377 CCCTTTGAAGAACGTGACCAC 59.398 52.381 0.00 0.00 0.00 4.16
1873 2728 2.285083 CCTTTGAAGAACGTGACCACA 58.715 47.619 0.00 0.00 0.00 4.17
1875 2730 3.127895 CCTTTGAAGAACGTGACCACAAA 59.872 43.478 0.00 0.00 0.00 2.83
1876 2731 3.750639 TTGAAGAACGTGACCACAAAC 57.249 42.857 0.00 0.00 0.00 2.93
1901 2855 9.956720 ACTCATTTCTTGTATGTTTCAGAAAAG 57.043 29.630 0.00 0.00 0.00 2.27
1935 2889 1.465777 GCATAAAACCTAACGGTGCGT 59.534 47.619 0.00 0.00 44.73 5.24
1945 2899 3.659092 CGGTGCGTGTGCCACAAT 61.659 61.111 0.00 0.00 41.78 2.71
1948 2902 0.312416 GGTGCGTGTGCCACAATTTA 59.688 50.000 0.00 0.00 41.78 1.40
1950 2904 2.609244 GGTGCGTGTGCCACAATTTAAT 60.609 45.455 0.00 0.00 41.78 1.40
1952 2906 3.606346 GTGCGTGTGCCACAATTTAATAC 59.394 43.478 0.00 0.00 41.78 1.89
1953 2907 3.504134 TGCGTGTGCCACAATTTAATACT 59.496 39.130 0.00 0.00 41.78 2.12
1954 2908 3.851403 GCGTGTGCCACAATTTAATACTG 59.149 43.478 0.00 0.00 33.40 2.74
1955 2909 4.614993 GCGTGTGCCACAATTTAATACTGT 60.615 41.667 0.00 0.00 33.40 3.55
1956 2910 5.391097 GCGTGTGCCACAATTTAATACTGTA 60.391 40.000 0.00 0.00 33.40 2.74
1959 2913 6.799925 GTGTGCCACAATTTAATACTGTACAC 59.200 38.462 0.00 0.00 34.08 2.90
2000 3811 3.700538 TCTGCAAATGCCTAATGGAGTT 58.299 40.909 2.46 0.00 41.18 3.01
2017 3828 3.490399 GAGTTCGGAGTTTCAGTAGTCG 58.510 50.000 0.00 0.00 0.00 4.18
2021 3832 1.199327 CGGAGTTTCAGTAGTCGCTGA 59.801 52.381 0.00 0.00 43.03 4.26
2043 3854 7.148540 GCTGAAAAAGAAATATGAAATGCAGCA 60.149 33.333 0.00 0.00 41.33 4.41
2196 4463 2.555757 GCTGATTGAGCCAACTTCAACT 59.444 45.455 0.00 0.00 42.54 3.16
2207 4474 4.335594 GCCAACTTCAACTCCCATATACAC 59.664 45.833 0.00 0.00 0.00 2.90
2234 4502 4.119136 GCAACAAGTAGCAACCAAAACAT 58.881 39.130 0.00 0.00 0.00 2.71
2251 4519 6.183360 CCAAAACATACACAAAACACAAGGTG 60.183 38.462 0.00 0.00 39.75 4.00
2281 4549 5.048921 ACAGCAATGATCTTCACAGAAACTG 60.049 40.000 0.00 0.00 37.52 3.16
2325 4595 9.638239 GGTAAAATCTCTTGCACAATCAAAATA 57.362 29.630 0.00 0.00 0.00 1.40
2401 4671 6.703165 CCAAAATCTGGTTCTTCCTTGAAAAG 59.297 38.462 0.00 0.00 41.46 2.27
2436 4706 4.682787 TCTACAGCAATGTTACAGATCCG 58.317 43.478 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 13 1.237533 TGCAAGCATGTGTGGTAGTG 58.762 50.000 0.00 0.00 34.36 2.74
68 70 0.108804 TTGCTAGCTAGTCGTGGTGC 60.109 55.000 21.62 6.51 0.00 5.01
112 114 4.763793 GGTGATGGAATTGTAGCATGCTAT 59.236 41.667 29.17 14.31 0.00 2.97
126 128 2.766263 CTGGTAGCTAGTGGTGATGGAA 59.234 50.000 0.00 0.00 0.00 3.53
210 247 4.222124 ACTTACCCACTTTAGCCAGATG 57.778 45.455 0.00 0.00 0.00 2.90
215 252 4.710865 ACTCTCTACTTACCCACTTTAGCC 59.289 45.833 0.00 0.00 0.00 3.93
220 257 4.325974 CCCCTACTCTCTACTTACCCACTT 60.326 50.000 0.00 0.00 0.00 3.16
265 309 4.069232 CTCCTTCCGGCTGCGTCA 62.069 66.667 0.00 0.00 0.00 4.35
316 363 1.046984 CGTTTCACGTCGACGATGAA 58.953 50.000 41.52 35.94 43.02 2.57
320 367 0.110956 CTCTCGTTTCACGTCGACGA 60.111 55.000 41.52 20.19 43.14 4.20
326 373 0.039074 CTCTGGCTCTCGTTTCACGT 60.039 55.000 0.00 0.00 43.14 4.49
333 380 0.530288 GCTTCTTCTCTGGCTCTCGT 59.470 55.000 0.00 0.00 0.00 4.18
337 384 1.569708 CGATGCTTCTTCTCTGGCTC 58.430 55.000 0.00 0.00 0.00 4.70
338 385 0.461693 GCGATGCTTCTTCTCTGGCT 60.462 55.000 0.00 0.00 0.00 4.75
342 389 2.480416 CGGTAAGCGATGCTTCTTCTCT 60.480 50.000 7.40 0.00 46.77 3.10
354 401 3.047718 CTGACGAGCCGGTAAGCGA 62.048 63.158 1.90 0.00 38.01 4.93
371 418 1.532604 TTCCCGCACAGATCGACACT 61.533 55.000 0.00 0.00 0.00 3.55
381 428 2.282180 GCTTTCCCTTCCCGCACA 60.282 61.111 0.00 0.00 0.00 4.57
383 430 2.351276 GAGCTTTCCCTTCCCGCA 59.649 61.111 0.00 0.00 0.00 5.69
386 433 1.407025 CCTTACGAGCTTTCCCTTCCC 60.407 57.143 0.00 0.00 0.00 3.97
402 449 1.301623 CGCCACCATTCACCCCTTA 59.698 57.895 0.00 0.00 0.00 2.69
409 456 2.115052 AACTGCCGCCACCATTCA 59.885 55.556 0.00 0.00 0.00 2.57
422 469 0.742281 CTCATCTCACCGCCCAACTG 60.742 60.000 0.00 0.00 0.00 3.16
481 529 4.320641 CGAAAAAGCAACGGGAGGAATTAA 60.321 41.667 0.00 0.00 0.00 1.40
552 600 1.293498 CAGAGGAGGGGAACACACG 59.707 63.158 0.00 0.00 0.00 4.49
553 601 1.003233 GCAGAGGAGGGGAACACAC 60.003 63.158 0.00 0.00 0.00 3.82
597 645 2.437895 GCGGTTAGTTCAGCCCCC 60.438 66.667 0.00 0.00 0.00 5.40
598 646 1.449778 GAGCGGTTAGTTCAGCCCC 60.450 63.158 0.00 0.00 0.00 5.80
602 650 1.590147 ACCCGAGCGGTTAGTTCAG 59.410 57.895 8.25 0.00 45.36 3.02
603 651 3.781760 ACCCGAGCGGTTAGTTCA 58.218 55.556 8.25 0.00 45.36 3.18
612 660 3.905678 CCCAGCTAGACCCGAGCG 61.906 72.222 0.00 0.00 44.98 5.03
613 661 2.442272 TCCCAGCTAGACCCGAGC 60.442 66.667 0.00 0.00 40.42 5.03
614 662 1.830408 CCTCCCAGCTAGACCCGAG 60.830 68.421 0.00 0.00 0.00 4.63
615 663 2.279073 CCTCCCAGCTAGACCCGA 59.721 66.667 0.00 0.00 0.00 5.14
644 696 1.105457 GTTTGGCCTGCATAGCATGA 58.895 50.000 3.32 0.00 38.13 3.07
678 744 4.620982 GAGGTGAAATTGAACTGTTTGGG 58.379 43.478 0.00 0.00 0.00 4.12
685 751 0.517316 GCGCGAGGTGAAATTGAACT 59.483 50.000 12.10 0.00 0.00 3.01
688 754 2.387445 CCGCGCGAGGTGAAATTGA 61.387 57.895 34.63 0.00 0.00 2.57
716 782 5.562696 CGTGTTTGATTAACTGCATGGAGTT 60.563 40.000 31.45 31.45 39.54 3.01
717 783 4.083324 CGTGTTTGATTAACTGCATGGAGT 60.083 41.667 14.93 14.93 37.64 3.85
728 794 4.559704 GCCATTTGGGACGTGTTTGATTAA 60.560 41.667 0.00 0.00 40.01 1.40
746 812 2.017049 GTGCTTATGTCTTCGGCCATT 58.983 47.619 2.24 0.00 0.00 3.16
760 826 1.538047 AACGAGGGAGTACGTGCTTA 58.462 50.000 7.83 0.00 42.43 3.09
771 837 4.672542 CGACGAGTAATTTGTAACGAGGGA 60.673 45.833 0.00 0.00 0.00 4.20
772 838 3.545078 CGACGAGTAATTTGTAACGAGGG 59.455 47.826 0.00 0.00 0.00 4.30
773 839 4.161333 ACGACGAGTAATTTGTAACGAGG 58.839 43.478 0.00 0.00 0.00 4.63
775 841 4.158384 GGACGACGAGTAATTTGTAACGA 58.842 43.478 0.00 0.00 0.00 3.85
776 842 3.913763 TGGACGACGAGTAATTTGTAACG 59.086 43.478 0.00 0.00 0.00 3.18
777 843 5.182525 GTGGACGACGAGTAATTTGTAAC 57.817 43.478 0.00 0.00 0.00 2.50
790 856 2.588146 ATTACTCGCCGTGGACGACG 62.588 60.000 2.65 2.65 46.18 5.12
793 859 0.368907 CAAATTACTCGCCGTGGACG 59.631 55.000 0.00 0.00 39.44 4.79
794 860 0.725117 CCAAATTACTCGCCGTGGAC 59.275 55.000 0.00 0.00 0.00 4.02
795 861 0.609151 TCCAAATTACTCGCCGTGGA 59.391 50.000 0.00 0.00 32.80 4.02
796 862 1.129811 GTTCCAAATTACTCGCCGTGG 59.870 52.381 0.00 0.00 0.00 4.94
797 863 1.201877 CGTTCCAAATTACTCGCCGTG 60.202 52.381 0.00 0.00 0.00 4.94
798 864 1.073177 CGTTCCAAATTACTCGCCGT 58.927 50.000 0.00 0.00 0.00 5.68
799 865 0.372334 CCGTTCCAAATTACTCGCCG 59.628 55.000 0.00 0.00 0.00 6.46
800 866 1.664151 CTCCGTTCCAAATTACTCGCC 59.336 52.381 0.00 0.00 0.00 5.54
801 867 1.664151 CCTCCGTTCCAAATTACTCGC 59.336 52.381 0.00 0.00 0.00 5.03
802 868 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
803 869 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
804 870 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
805 871 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
806 872 3.119029 CGTACTCCCTCCGTTCCAAATTA 60.119 47.826 0.00 0.00 0.00 1.40
807 873 2.354403 CGTACTCCCTCCGTTCCAAATT 60.354 50.000 0.00 0.00 0.00 1.82
808 874 1.206371 CGTACTCCCTCCGTTCCAAAT 59.794 52.381 0.00 0.00 0.00 2.32
809 875 0.604578 CGTACTCCCTCCGTTCCAAA 59.395 55.000 0.00 0.00 0.00 3.28
810 876 0.540365 ACGTACTCCCTCCGTTCCAA 60.540 55.000 0.00 0.00 0.00 3.53
811 877 0.327924 TACGTACTCCCTCCGTTCCA 59.672 55.000 0.00 0.00 36.12 3.53
812 878 1.685148 ATACGTACTCCCTCCGTTCC 58.315 55.000 0.00 0.00 36.12 3.62
813 879 3.879892 AGTAATACGTACTCCCTCCGTTC 59.120 47.826 0.00 0.00 38.84 3.95
814 880 3.891049 AGTAATACGTACTCCCTCCGTT 58.109 45.455 0.00 0.00 38.84 4.44
815 881 3.567478 AGTAATACGTACTCCCTCCGT 57.433 47.619 0.00 0.00 38.84 4.69
816 882 5.240891 TGATAGTAATACGTACTCCCTCCG 58.759 45.833 0.00 0.00 42.37 4.63
817 883 5.123661 GCTGATAGTAATACGTACTCCCTCC 59.876 48.000 0.00 0.00 42.37 4.30
818 884 5.704515 TGCTGATAGTAATACGTACTCCCTC 59.295 44.000 0.00 0.00 42.37 4.30
819 885 5.628130 TGCTGATAGTAATACGTACTCCCT 58.372 41.667 0.00 0.00 42.37 4.20
820 886 5.472820 ACTGCTGATAGTAATACGTACTCCC 59.527 44.000 0.00 0.00 42.37 4.30
821 887 6.372185 CACTGCTGATAGTAATACGTACTCC 58.628 44.000 0.00 0.00 42.37 3.85
822 888 5.852229 GCACTGCTGATAGTAATACGTACTC 59.148 44.000 0.00 0.00 42.37 2.59
823 889 5.560375 CGCACTGCTGATAGTAATACGTACT 60.560 44.000 0.00 0.00 45.42 2.73
824 890 4.611782 CGCACTGCTGATAGTAATACGTAC 59.388 45.833 0.00 0.00 0.00 3.67
825 891 4.274214 ACGCACTGCTGATAGTAATACGTA 59.726 41.667 0.00 0.00 0.00 3.57
826 892 3.066342 ACGCACTGCTGATAGTAATACGT 59.934 43.478 0.00 0.00 0.00 3.57
830 896 3.383505 TGGTACGCACTGCTGATAGTAAT 59.616 43.478 0.00 0.00 0.00 1.89
875 941 0.997196 CCGCGTAGTTAAGGTTCAGC 59.003 55.000 4.92 0.00 0.00 4.26
922 988 4.439057 TGTACGCCTTCCATTGAATCTAC 58.561 43.478 0.00 0.00 0.00 2.59
924 990 3.627395 TGTACGCCTTCCATTGAATCT 57.373 42.857 0.00 0.00 0.00 2.40
927 993 3.006940 GACATGTACGCCTTCCATTGAA 58.993 45.455 0.00 0.00 0.00 2.69
930 996 1.742411 CGGACATGTACGCCTTCCATT 60.742 52.381 19.17 0.00 0.00 3.16
933 999 1.520787 CCGGACATGTACGCCTTCC 60.521 63.158 25.39 6.17 35.10 3.46
937 1003 2.573609 AAGCTCCGGACATGTACGCC 62.574 60.000 25.39 14.52 35.10 5.68
941 1007 2.301870 ACAAAGAAGCTCCGGACATGTA 59.698 45.455 0.00 0.00 0.00 2.29
942 1008 1.072331 ACAAAGAAGCTCCGGACATGT 59.928 47.619 0.00 0.00 0.00 3.21
943 1009 1.813513 ACAAAGAAGCTCCGGACATG 58.186 50.000 0.00 0.00 0.00 3.21
945 1011 4.811969 TTATACAAAGAAGCTCCGGACA 57.188 40.909 0.00 0.00 0.00 4.02
946 1012 5.445540 CGTTTTATACAAAGAAGCTCCGGAC 60.446 44.000 0.00 0.00 0.00 4.79
1067 1188 1.501604 GGTACCTGAGAGGAGGAGGAT 59.498 57.143 4.06 0.00 37.67 3.24
1087 1214 2.320781 AGTGAGGATACGAATGGAGGG 58.679 52.381 0.00 0.00 46.39 4.30
1095 1222 2.094906 CGTGGTTGAAGTGAGGATACGA 60.095 50.000 0.00 0.00 46.39 3.43
1154 1294 4.808558 TGATGCACAACAAAAAGCTATCC 58.191 39.130 0.00 0.00 0.00 2.59
1158 1298 2.867975 GCTTGATGCACAACAAAAAGCT 59.132 40.909 0.00 0.00 42.88 3.74
1172 1317 0.892358 ACCACCAGCACTGCTTGATG 60.892 55.000 9.05 4.38 41.64 3.07
1182 1327 4.263572 CCCCGAACACCACCAGCA 62.264 66.667 0.00 0.00 0.00 4.41
1348 1493 0.035739 TTTTGGGGCAGTCGTAGGTC 59.964 55.000 0.00 0.00 0.00 3.85
1383 1528 0.666274 GCGTGCAGTGTACAGCAGTA 60.666 55.000 17.92 0.00 39.05 2.74
1384 1529 1.956170 GCGTGCAGTGTACAGCAGT 60.956 57.895 17.92 0.00 39.05 4.40
1385 1530 2.856032 GCGTGCAGTGTACAGCAG 59.144 61.111 17.92 6.22 39.05 4.24
1386 1531 3.035503 CGCGTGCAGTGTACAGCA 61.036 61.111 20.81 5.73 35.99 4.41
1387 1532 2.480426 GAACGCGTGCAGTGTACAGC 62.480 60.000 14.98 13.56 43.84 4.40
1388 1533 1.487231 GAACGCGTGCAGTGTACAG 59.513 57.895 14.98 7.16 43.84 2.74
1422 1568 3.859961 ACTCAAGCTCAAACACGATATCG 59.140 43.478 23.18 23.18 46.33 2.92
1426 1572 3.466836 TGAACTCAAGCTCAAACACGAT 58.533 40.909 0.00 0.00 0.00 3.73
1438 1625 3.829886 TGCCGCTTTATTGAACTCAAG 57.170 42.857 0.00 0.00 39.47 3.02
1439 1626 4.782019 ATTGCCGCTTTATTGAACTCAA 57.218 36.364 0.00 0.00 40.51 3.02
1440 1627 4.022416 ACAATTGCCGCTTTATTGAACTCA 60.022 37.500 5.05 0.00 34.28 3.41
1441 1628 4.324402 CACAATTGCCGCTTTATTGAACTC 59.676 41.667 5.05 0.00 34.28 3.01
1442 1629 4.236935 CACAATTGCCGCTTTATTGAACT 58.763 39.130 5.05 0.00 34.28 3.01
1443 1630 3.987220 ACACAATTGCCGCTTTATTGAAC 59.013 39.130 5.05 0.00 34.28 3.18
1470 1657 7.493320 CCATTCCATTCCATTTATCAGTTGTTG 59.507 37.037 0.00 0.00 0.00 3.33
1480 1667 6.171921 CAAACTTGCCATTCCATTCCATTTA 58.828 36.000 0.00 0.00 0.00 1.40
1481 1668 4.914177 AACTTGCCATTCCATTCCATTT 57.086 36.364 0.00 0.00 0.00 2.32
1482 1669 4.041938 ACAAACTTGCCATTCCATTCCATT 59.958 37.500 0.00 0.00 0.00 3.16
1483 1670 3.583966 ACAAACTTGCCATTCCATTCCAT 59.416 39.130 0.00 0.00 0.00 3.41
1484 1671 2.971330 ACAAACTTGCCATTCCATTCCA 59.029 40.909 0.00 0.00 0.00 3.53
1485 1672 3.328505 CACAAACTTGCCATTCCATTCC 58.671 45.455 0.00 0.00 0.00 3.01
1507 1694 8.362639 CCAATCAATTCATTACTTATTCCAGGG 58.637 37.037 0.00 0.00 0.00 4.45
1578 1926 3.440173 GCAATCCGTCTTTTCATCCTTGA 59.560 43.478 0.00 0.00 0.00 3.02
1594 1942 5.050159 GTGAAAACTGAAACCAATGCAATCC 60.050 40.000 0.00 0.00 0.00 3.01
1647 2481 3.060602 CAGAGAACGGAAACAACTCCTC 58.939 50.000 0.00 0.00 32.82 3.71
1648 2482 2.224305 CCAGAGAACGGAAACAACTCCT 60.224 50.000 0.00 0.00 32.82 3.69
1660 2494 0.803768 CCTGCACGATCCAGAGAACG 60.804 60.000 0.00 0.00 43.34 3.95
1678 2512 1.517242 GATCCAATCACGATGAGCCC 58.483 55.000 0.00 0.00 0.00 5.19
1697 2531 1.529226 TGCCTCGGTGTTTTGTATGG 58.471 50.000 0.00 0.00 0.00 2.74
1702 2536 2.543653 CCTTTCTTGCCTCGGTGTTTTG 60.544 50.000 0.00 0.00 0.00 2.44
1710 2544 0.324943 TCCCTTCCTTTCTTGCCTCG 59.675 55.000 0.00 0.00 0.00 4.63
1718 2552 1.269723 CGCAAACCTTCCCTTCCTTTC 59.730 52.381 0.00 0.00 0.00 2.62
1743 2577 2.587194 ATCGCATCCTCGCAGCAC 60.587 61.111 0.00 0.00 0.00 4.40
1744 2578 2.576643 TTCATCGCATCCTCGCAGCA 62.577 55.000 0.00 0.00 0.00 4.41
1745 2579 1.884464 TTCATCGCATCCTCGCAGC 60.884 57.895 0.00 0.00 0.00 5.25
1752 2586 1.004610 CACGTCATGTTCATCGCATCC 60.005 52.381 0.00 0.00 0.00 3.51
1775 2609 4.077188 GCAGTTGCACGCTCGACC 62.077 66.667 0.00 0.00 41.59 4.79
1797 2652 4.767255 AGCCTTTCTCGCCGGCAG 62.767 66.667 28.98 21.96 46.14 4.85
1816 2671 1.361668 CGTTGCCGAGGAAGATGGTG 61.362 60.000 0.00 0.00 35.63 4.17
1840 2695 0.871722 TCAAAGGGCATTTCGTCACG 59.128 50.000 0.00 0.00 0.00 4.35
1858 2713 2.933906 TGAGTTTGTGGTCACGTTCTTC 59.066 45.455 0.00 0.00 0.00 2.87
1863 2718 3.541632 AGAAATGAGTTTGTGGTCACGT 58.458 40.909 0.00 0.00 0.00 4.49
1864 2719 4.201910 ACAAGAAATGAGTTTGTGGTCACG 60.202 41.667 0.00 0.00 34.04 4.35
1865 2720 5.248870 ACAAGAAATGAGTTTGTGGTCAC 57.751 39.130 0.00 0.00 34.04 3.67
1867 2722 6.970484 ACATACAAGAAATGAGTTTGTGGTC 58.030 36.000 0.00 0.00 36.52 4.02
1868 2723 6.959639 ACATACAAGAAATGAGTTTGTGGT 57.040 33.333 0.00 0.00 36.52 4.16
1870 2725 8.854979 TGAAACATACAAGAAATGAGTTTGTG 57.145 30.769 0.00 0.00 36.52 3.33
1872 2727 9.734620 TTCTGAAACATACAAGAAATGAGTTTG 57.265 29.630 0.00 0.00 34.64 2.93
1875 2730 9.956720 CTTTTCTGAAACATACAAGAAATGAGT 57.043 29.630 1.58 0.00 0.00 3.41
1935 2889 6.486993 TGTGTACAGTATTAAATTGTGGCACA 59.513 34.615 17.96 17.96 38.46 4.57
1959 2913 3.198635 AGAATCACCCAGACACATACCTG 59.801 47.826 0.00 0.00 0.00 4.00
1962 2916 2.939103 GCAGAATCACCCAGACACATAC 59.061 50.000 0.00 0.00 0.00 2.39
1963 2917 2.571202 TGCAGAATCACCCAGACACATA 59.429 45.455 0.00 0.00 0.00 2.29
1964 2918 1.352017 TGCAGAATCACCCAGACACAT 59.648 47.619 0.00 0.00 0.00 3.21
1965 2919 0.764271 TGCAGAATCACCCAGACACA 59.236 50.000 0.00 0.00 0.00 3.72
1966 2920 1.896220 TTGCAGAATCACCCAGACAC 58.104 50.000 0.00 0.00 0.00 3.67
1967 2921 2.655090 TTTGCAGAATCACCCAGACA 57.345 45.000 0.00 0.00 0.00 3.41
1968 2922 2.416431 GCATTTGCAGAATCACCCAGAC 60.416 50.000 0.00 0.00 41.59 3.51
1970 2924 1.134907 GGCATTTGCAGAATCACCCAG 60.135 52.381 4.74 0.00 44.36 4.45
2000 3811 1.199327 CAGCGACTACTGAAACTCCGA 59.801 52.381 0.00 0.00 40.25 4.55
2017 3828 7.148540 TGCTGCATTTCATATTTCTTTTTCAGC 60.149 33.333 0.00 0.00 40.49 4.26
2021 3832 6.877322 AGCTGCTGCATTTCATATTTCTTTTT 59.123 30.769 18.42 0.00 42.74 1.94
2043 3854 0.819259 ACGGTGAATTGTGTGCAGCT 60.819 50.000 0.00 0.00 0.00 4.24
2160 3971 0.321346 TCAGCTGTTGATTCTGCCGA 59.679 50.000 14.67 0.00 33.76 5.54
2161 3972 1.376543 ATCAGCTGTTGATTCTGCCG 58.623 50.000 14.67 0.00 44.14 5.69
2196 4463 2.238395 TGTTGCAGCAGTGTATATGGGA 59.762 45.455 0.00 0.00 0.00 4.37
2207 4474 1.335324 GGTTGCTACTTGTTGCAGCAG 60.335 52.381 20.10 1.06 44.88 4.24
2234 4502 3.674682 GCTTGCACCTTGTGTTTTGTGTA 60.675 43.478 0.00 0.00 35.75 2.90
2251 4519 2.094906 TGAAGATCATTGCTGTGCTTGC 60.095 45.455 0.00 0.00 0.00 4.01
2265 4533 7.426929 TTCTTAAGCAGTTTCTGTGAAGATC 57.573 36.000 0.00 0.00 31.33 2.75
2308 4576 8.291191 TGGTATGATATTTTGATTGTGCAAGA 57.709 30.769 0.00 0.00 0.00 3.02
2395 4665 9.640963 GCTGTAGAGAGTTAATACTTCTTTTCA 57.359 33.333 0.00 0.00 33.84 2.69
2401 4671 8.934507 ACATTGCTGTAGAGAGTTAATACTTC 57.065 34.615 0.00 0.00 31.45 3.01
2411 4681 5.982516 GGATCTGTAACATTGCTGTAGAGAG 59.017 44.000 0.00 0.00 33.36 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.