Multiple sequence alignment - TraesCS4A01G250000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G250000 chr4A 100.000 3679 0 0 1 3679 560993640 560997318 0.000000e+00 6794.0
1 TraesCS4A01G250000 chr4D 91.170 1846 114 19 1 1835 39360698 39362505 0.000000e+00 2460.0
2 TraesCS4A01G250000 chr4D 85.444 1216 105 18 1938 3098 39362503 39363701 0.000000e+00 1199.0
3 TraesCS4A01G250000 chr4D 90.636 566 39 8 3123 3676 39363783 39364346 0.000000e+00 739.0
4 TraesCS4A01G250000 chr4D 95.370 108 4 1 1833 1940 83148098 83148204 1.760000e-38 171.0
5 TraesCS4A01G250000 chr4D 100.000 33 0 0 3095 3127 39363723 39363755 1.100000e-05 62.1
6 TraesCS4A01G250000 chr4B 94.892 1018 51 1 819 1835 57750022 57749005 0.000000e+00 1591.0
7 TraesCS4A01G250000 chr4B 85.292 1183 104 20 1938 3065 57749007 57747840 0.000000e+00 1157.0
8 TraesCS4A01G250000 chr4B 86.041 831 77 23 1 822 57750883 57750083 0.000000e+00 856.0
9 TraesCS4A01G250000 chr4B 89.753 566 42 7 3123 3679 57747736 57747178 0.000000e+00 710.0
10 TraesCS4A01G250000 chr4B 95.370 108 4 1 1833 1940 117778784 117778890 1.760000e-38 171.0
11 TraesCS4A01G250000 chr6B 91.597 119 9 1 1834 1951 6195736 6195618 2.940000e-36 163.0
12 TraesCS4A01G250000 chr2A 84.685 111 11 5 1834 1941 653367492 653367599 5.020000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G250000 chr4A 560993640 560997318 3678 False 6794.000 6794 100.0000 1 3679 1 chr4A.!!$F1 3678
1 TraesCS4A01G250000 chr4D 39360698 39364346 3648 False 1115.025 2460 91.8125 1 3676 4 chr4D.!!$F2 3675
2 TraesCS4A01G250000 chr4B 57747178 57750883 3705 True 1078.500 1591 88.9945 1 3679 4 chr4B.!!$R1 3678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
293 296 1.070376 CATTCGGTGATGCTGCATACG 60.070 52.381 16.23 19.01 0.0 3.06 F
1908 1990 1.072806 TGTGCTCTGTCTGAATTGCCT 59.927 47.619 0.00 0.00 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1939 2021 0.250467 AGCAACAGCAGAACACCGAT 60.250 50.0 0.0 0.0 0.0 4.18 R
3376 3611 0.250553 TTCACAGGCAAAGGGGTACG 60.251 55.0 0.0 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 2.035193 ACGCATGCTGGACTATAGTGAG 59.965 50.000 17.13 7.11 0.00 3.51
77 78 5.221884 GCTGGACTATAGTGAGACTACCCTA 60.222 48.000 10.90 0.00 32.84 3.53
78 79 6.522804 GCTGGACTATAGTGAGACTACCCTAT 60.523 46.154 10.90 0.00 32.84 2.57
84 85 7.830201 ACTATAGTGAGACTACCCTATACATGC 59.170 40.741 4.10 0.00 32.84 4.06
147 148 5.766150 TTGACCTAAACAGTGAATGGTTG 57.234 39.130 0.00 0.00 39.84 3.77
160 161 3.870419 TGAATGGTTGCTTTGTCTTTTGC 59.130 39.130 0.00 0.00 0.00 3.68
163 164 2.204237 GGTTGCTTTGTCTTTTGCTGG 58.796 47.619 0.00 0.00 0.00 4.85
168 169 2.799562 GCTTTGTCTTTTGCTGGTGGTC 60.800 50.000 0.00 0.00 0.00 4.02
171 172 2.846193 TGTCTTTTGCTGGTGGTCTAC 58.154 47.619 0.00 0.00 0.00 2.59
174 175 1.225376 TTTTGCTGGTGGTCTACGCG 61.225 55.000 3.53 3.53 0.00 6.01
217 219 3.327404 GGCCCCGACCTTGGAGAA 61.327 66.667 0.00 0.00 0.00 2.87
220 222 1.910580 GCCCCGACCTTGGAGAATGA 61.911 60.000 0.00 0.00 0.00 2.57
258 261 1.407618 TCACGTGATTAGGGGTGATCG 59.592 52.381 15.76 0.00 34.71 3.69
262 265 1.760613 GTGATTAGGGGTGATCGGTGA 59.239 52.381 0.00 0.00 0.00 4.02
285 288 3.363378 CGAAGCTAATCATTCGGTGATGC 60.363 47.826 5.22 5.75 46.80 3.91
293 296 1.070376 CATTCGGTGATGCTGCATACG 60.070 52.381 16.23 19.01 0.00 3.06
309 312 2.034048 TACGCATGGCCGCCTAATCA 62.034 55.000 11.61 0.00 0.00 2.57
349 352 4.715130 TGGGGGTGAGGGGTCTCG 62.715 72.222 0.00 0.00 42.79 4.04
379 382 3.489513 CCCCTTGGATCCGTCCCC 61.490 72.222 7.39 0.00 44.41 4.81
406 409 7.655490 CCTTTGAAGAATCCCATAATTAGCTG 58.345 38.462 0.00 0.00 0.00 4.24
420 423 9.787435 CCATAATTAGCTGGGTAACAAACTATA 57.213 33.333 0.00 0.00 39.74 1.31
469 472 5.800296 TGACTTTATTCATCAAAGGACCGA 58.200 37.500 0.00 0.00 37.32 4.69
525 528 8.548880 AATCAAGGATGAGATCATTCCAAAAT 57.451 30.769 10.21 0.20 39.39 1.82
555 558 9.476928 AAAGATCTAGTAGTAAAGCCAGACTTA 57.523 33.333 0.00 0.00 37.75 2.24
565 568 7.168905 AGTAAAGCCAGACTTAGCTAAACAAT 58.831 34.615 7.74 0.00 38.74 2.71
566 569 6.502136 AAAGCCAGACTTAGCTAAACAATC 57.498 37.500 7.74 3.49 38.74 2.67
567 570 4.518249 AGCCAGACTTAGCTAAACAATCC 58.482 43.478 7.74 0.00 37.64 3.01
568 571 4.019321 AGCCAGACTTAGCTAAACAATCCA 60.019 41.667 7.74 0.00 37.64 3.41
580 583 6.041979 AGCTAAACAATCCACCACTTCATTTT 59.958 34.615 0.00 0.00 0.00 1.82
581 584 6.146021 GCTAAACAATCCACCACTTCATTTTG 59.854 38.462 0.00 0.00 0.00 2.44
583 586 3.244181 ACAATCCACCACTTCATTTTGCC 60.244 43.478 0.00 0.00 0.00 4.52
584 587 2.380064 TCCACCACTTCATTTTGCCT 57.620 45.000 0.00 0.00 0.00 4.75
585 588 2.238521 TCCACCACTTCATTTTGCCTC 58.761 47.619 0.00 0.00 0.00 4.70
586 589 2.158475 TCCACCACTTCATTTTGCCTCT 60.158 45.455 0.00 0.00 0.00 3.69
587 590 2.229784 CCACCACTTCATTTTGCCTCTC 59.770 50.000 0.00 0.00 0.00 3.20
600 605 3.076079 TGCCTCTCAGCAATGATGAAA 57.924 42.857 1.95 0.00 40.56 2.69
606 614 6.683110 GCCTCTCAGCAATGATGAAAATCAAT 60.683 38.462 1.95 0.00 33.83 2.57
608 616 7.861372 CCTCTCAGCAATGATGAAAATCAATAC 59.139 37.037 1.95 0.00 33.83 1.89
615 623 9.585099 GCAATGATGAAAATCAATACTACCAAA 57.415 29.630 0.00 0.00 33.83 3.28
642 650 4.932799 ACTAACAAGTTTTTGCCACAAACC 59.067 37.500 2.96 0.00 37.85 3.27
643 651 3.409026 ACAAGTTTTTGCCACAAACCA 57.591 38.095 2.96 0.00 37.85 3.67
644 652 3.949132 ACAAGTTTTTGCCACAAACCAT 58.051 36.364 2.96 0.00 37.85 3.55
645 653 5.091261 ACAAGTTTTTGCCACAAACCATA 57.909 34.783 2.96 0.00 37.85 2.74
646 654 5.679601 ACAAGTTTTTGCCACAAACCATAT 58.320 33.333 2.96 0.00 37.85 1.78
647 655 6.118852 ACAAGTTTTTGCCACAAACCATATT 58.881 32.000 2.96 0.00 37.85 1.28
648 656 6.601217 ACAAGTTTTTGCCACAAACCATATTT 59.399 30.769 2.96 0.00 37.85 1.40
649 657 7.121907 ACAAGTTTTTGCCACAAACCATATTTT 59.878 29.630 2.96 0.00 37.85 1.82
650 658 7.637631 AGTTTTTGCCACAAACCATATTTTT 57.362 28.000 2.96 0.00 35.10 1.94
651 659 7.479150 AGTTTTTGCCACAAACCATATTTTTG 58.521 30.769 2.96 5.39 39.44 2.44
652 660 7.121907 AGTTTTTGCCACAAACCATATTTTTGT 59.878 29.630 2.96 6.43 45.90 2.83
653 661 7.396540 TTTTGCCACAAACCATATTTTTGTT 57.603 28.000 8.80 0.00 43.16 2.83
654 662 8.506168 TTTTGCCACAAACCATATTTTTGTTA 57.494 26.923 8.80 0.00 43.16 2.41
655 663 8.506168 TTTGCCACAAACCATATTTTTGTTAA 57.494 26.923 8.80 4.27 43.16 2.01
656 664 8.682936 TTGCCACAAACCATATTTTTGTTAAT 57.317 26.923 8.80 0.00 43.16 1.40
657 665 8.316640 TGCCACAAACCATATTTTTGTTAATC 57.683 30.769 8.80 2.19 43.16 1.75
658 666 7.933577 TGCCACAAACCATATTTTTGTTAATCA 59.066 29.630 8.80 4.03 43.16 2.57
659 667 8.778358 GCCACAAACCATATTTTTGTTAATCAA 58.222 29.630 8.80 0.00 43.16 2.57
684 692 4.083003 GGAACATAATGTTTTCGCCTCACA 60.083 41.667 0.00 0.00 41.28 3.58
689 697 2.679355 TGTTTTCGCCTCACATTTCG 57.321 45.000 0.00 0.00 0.00 3.46
818 830 9.403110 CAAAACCAATTGTCTTTCTTCAGATAG 57.597 33.333 4.43 0.00 0.00 2.08
819 831 8.924511 AAACCAATTGTCTTTCTTCAGATAGA 57.075 30.769 4.43 0.00 31.31 1.98
820 832 8.558973 AACCAATTGTCTTTCTTCAGATAGAG 57.441 34.615 4.43 0.00 33.82 2.43
821 833 7.684529 ACCAATTGTCTTTCTTCAGATAGAGT 58.315 34.615 4.43 0.00 33.82 3.24
822 834 8.816894 ACCAATTGTCTTTCTTCAGATAGAGTA 58.183 33.333 4.43 0.00 33.82 2.59
839 919 4.546570 AGAGTAAACCGCAAAAGAATTGC 58.453 39.130 3.16 3.16 41.71 3.56
850 931 4.978580 GCAAAAGAATTGCCCTCGATAATC 59.021 41.667 1.80 0.00 39.38 1.75
861 942 4.629200 GCCCTCGATAATCATCATTCAGAC 59.371 45.833 0.00 0.00 0.00 3.51
887 968 7.061419 ACGCCTTCTCGTTTTATTTACGTAGT 61.061 38.462 0.00 0.00 42.30 2.73
888 969 6.183360 CGCCTTCTCGTTTTATTTACGTAGTT 60.183 38.462 0.00 0.00 37.78 2.24
893 974 9.891828 TTCTCGTTTTATTTACGTAGTTCTGTA 57.108 29.630 0.00 0.00 37.78 2.74
920 1001 8.942338 ATACGTATTCAGTTCATAACATGTGT 57.058 30.769 1.14 0.00 0.00 3.72
1425 1506 4.660938 GTGCTCAAGGCCGGGGTT 62.661 66.667 2.18 0.00 40.92 4.11
1571 1652 7.761038 ACGAAGGAATTAGAGAAATTTTGGT 57.239 32.000 0.00 0.00 37.93 3.67
1633 1714 4.122776 CCTCTCGTTGATAGTGGAAATGG 58.877 47.826 0.00 0.00 30.69 3.16
1740 1822 6.183360 GCAAGGGAGAATGCATTTCTTAGAAT 60.183 38.462 14.33 0.00 44.88 2.40
1769 1851 8.680903 AGCAATTAGTTTATGACTGGATTTCTG 58.319 33.333 0.00 0.00 39.48 3.02
1780 1862 6.484288 TGACTGGATTTCTGTCATACCATTT 58.516 36.000 0.78 0.00 45.32 2.32
1835 1917 8.839310 ATCTAGGTAATGCATCTTTCATGTAC 57.161 34.615 0.00 0.00 0.00 2.90
1836 1918 8.023021 TCTAGGTAATGCATCTTTCATGTACT 57.977 34.615 0.00 0.00 0.00 2.73
1837 1919 8.144478 TCTAGGTAATGCATCTTTCATGTACTC 58.856 37.037 0.00 0.00 0.00 2.59
1838 1920 6.058183 AGGTAATGCATCTTTCATGTACTCC 58.942 40.000 0.00 0.00 0.00 3.85
1839 1921 5.239525 GGTAATGCATCTTTCATGTACTCCC 59.760 44.000 0.00 0.00 0.00 4.30
1840 1922 4.785346 ATGCATCTTTCATGTACTCCCT 57.215 40.909 0.00 0.00 0.00 4.20
1841 1923 4.142609 TGCATCTTTCATGTACTCCCTC 57.857 45.455 0.00 0.00 0.00 4.30
1842 1924 3.118261 TGCATCTTTCATGTACTCCCTCC 60.118 47.826 0.00 0.00 0.00 4.30
1843 1925 3.135530 GCATCTTTCATGTACTCCCTCCT 59.864 47.826 0.00 0.00 0.00 3.69
1844 1926 4.384647 GCATCTTTCATGTACTCCCTCCTT 60.385 45.833 0.00 0.00 0.00 3.36
1845 1927 5.749462 CATCTTTCATGTACTCCCTCCTTT 58.251 41.667 0.00 0.00 0.00 3.11
1846 1928 5.422214 TCTTTCATGTACTCCCTCCTTTC 57.578 43.478 0.00 0.00 0.00 2.62
1847 1929 5.094387 TCTTTCATGTACTCCCTCCTTTCT 58.906 41.667 0.00 0.00 0.00 2.52
1848 1930 6.261435 TCTTTCATGTACTCCCTCCTTTCTA 58.739 40.000 0.00 0.00 0.00 2.10
1849 1931 6.903534 TCTTTCATGTACTCCCTCCTTTCTAT 59.096 38.462 0.00 0.00 0.00 1.98
1850 1932 7.403231 TCTTTCATGTACTCCCTCCTTTCTATT 59.597 37.037 0.00 0.00 0.00 1.73
1851 1933 7.510675 TTCATGTACTCCCTCCTTTCTATTT 57.489 36.000 0.00 0.00 0.00 1.40
1852 1934 7.510675 TCATGTACTCCCTCCTTTCTATTTT 57.489 36.000 0.00 0.00 0.00 1.82
1853 1935 8.618240 TCATGTACTCCCTCCTTTCTATTTTA 57.382 34.615 0.00 0.00 0.00 1.52
1854 1936 9.225682 TCATGTACTCCCTCCTTTCTATTTTAT 57.774 33.333 0.00 0.00 0.00 1.40
1860 1942 8.422566 ACTCCCTCCTTTCTATTTTATAAGACG 58.577 37.037 0.00 0.00 0.00 4.18
1861 1943 8.315220 TCCCTCCTTTCTATTTTATAAGACGT 57.685 34.615 0.00 0.00 0.00 4.34
1862 1944 8.765517 TCCCTCCTTTCTATTTTATAAGACGTT 58.234 33.333 0.00 0.00 0.00 3.99
1863 1945 9.392259 CCCTCCTTTCTATTTTATAAGACGTTT 57.608 33.333 0.00 0.00 0.00 3.60
1874 1956 7.949903 TTTATAAGACGTTTTGTACAGCTGA 57.050 32.000 23.35 0.48 0.00 4.26
1875 1957 5.840940 ATAAGACGTTTTGTACAGCTGAC 57.159 39.130 23.35 14.55 0.00 3.51
1876 1958 3.173668 AGACGTTTTGTACAGCTGACA 57.826 42.857 23.35 17.05 0.00 3.58
1877 1959 3.728845 AGACGTTTTGTACAGCTGACAT 58.271 40.909 23.35 0.00 0.00 3.06
1878 1960 4.127171 AGACGTTTTGTACAGCTGACATT 58.873 39.130 23.35 0.00 0.00 2.71
1879 1961 4.024893 AGACGTTTTGTACAGCTGACATTG 60.025 41.667 23.35 11.77 0.00 2.82
1880 1962 3.874543 ACGTTTTGTACAGCTGACATTGA 59.125 39.130 23.35 3.10 0.00 2.57
1881 1963 4.334203 ACGTTTTGTACAGCTGACATTGAA 59.666 37.500 23.35 8.90 0.00 2.69
1882 1964 4.670621 CGTTTTGTACAGCTGACATTGAAC 59.329 41.667 23.35 19.53 0.00 3.18
1883 1965 5.504010 CGTTTTGTACAGCTGACATTGAACT 60.504 40.000 23.35 0.00 0.00 3.01
1884 1966 5.422666 TTTGTACAGCTGACATTGAACTG 57.577 39.130 23.35 0.00 0.00 3.16
1885 1967 4.071961 TGTACAGCTGACATTGAACTGT 57.928 40.909 23.35 0.00 43.60 3.55
1886 1968 4.450976 TGTACAGCTGACATTGAACTGTT 58.549 39.130 23.35 0.00 41.56 3.16
1887 1969 4.881273 TGTACAGCTGACATTGAACTGTTT 59.119 37.500 23.35 0.00 41.56 2.83
1888 1970 4.989279 ACAGCTGACATTGAACTGTTTT 57.011 36.364 23.35 0.00 38.38 2.43
1889 1971 4.675510 ACAGCTGACATTGAACTGTTTTG 58.324 39.130 23.35 0.00 38.38 2.44
1890 1972 4.158394 ACAGCTGACATTGAACTGTTTTGT 59.842 37.500 23.35 0.00 38.38 2.83
1891 1973 4.501559 CAGCTGACATTGAACTGTTTTGTG 59.498 41.667 8.42 4.62 0.00 3.33
1892 1974 3.243643 GCTGACATTGAACTGTTTTGTGC 59.756 43.478 8.72 4.90 0.00 4.57
1893 1975 4.675510 CTGACATTGAACTGTTTTGTGCT 58.324 39.130 8.72 0.00 0.00 4.40
1894 1976 4.671377 TGACATTGAACTGTTTTGTGCTC 58.329 39.130 8.72 0.00 0.00 4.26
1895 1977 4.398988 TGACATTGAACTGTTTTGTGCTCT 59.601 37.500 8.72 0.00 0.00 4.09
1896 1978 4.675510 ACATTGAACTGTTTTGTGCTCTG 58.324 39.130 0.00 0.00 0.00 3.35
1897 1979 4.158394 ACATTGAACTGTTTTGTGCTCTGT 59.842 37.500 0.00 0.00 0.00 3.41
1898 1980 4.355543 TTGAACTGTTTTGTGCTCTGTC 57.644 40.909 0.00 0.00 0.00 3.51
1899 1981 3.609853 TGAACTGTTTTGTGCTCTGTCT 58.390 40.909 0.00 0.00 0.00 3.41
1900 1982 3.374988 TGAACTGTTTTGTGCTCTGTCTG 59.625 43.478 0.00 0.00 0.00 3.51
1901 1983 3.266510 ACTGTTTTGTGCTCTGTCTGA 57.733 42.857 0.00 0.00 0.00 3.27
1902 1984 3.609853 ACTGTTTTGTGCTCTGTCTGAA 58.390 40.909 0.00 0.00 0.00 3.02
1903 1985 4.202441 ACTGTTTTGTGCTCTGTCTGAAT 58.798 39.130 0.00 0.00 0.00 2.57
1904 1986 4.641989 ACTGTTTTGTGCTCTGTCTGAATT 59.358 37.500 0.00 0.00 0.00 2.17
1905 1987 4.923893 TGTTTTGTGCTCTGTCTGAATTG 58.076 39.130 0.00 0.00 0.00 2.32
1906 1988 3.631145 TTTGTGCTCTGTCTGAATTGC 57.369 42.857 0.00 0.00 0.00 3.56
1907 1989 1.527034 TGTGCTCTGTCTGAATTGCC 58.473 50.000 0.00 0.00 0.00 4.52
1908 1990 1.072806 TGTGCTCTGTCTGAATTGCCT 59.927 47.619 0.00 0.00 0.00 4.75
1909 1991 2.302733 TGTGCTCTGTCTGAATTGCCTA 59.697 45.455 0.00 0.00 0.00 3.93
1910 1992 3.244526 TGTGCTCTGTCTGAATTGCCTAA 60.245 43.478 0.00 0.00 0.00 2.69
1911 1993 3.753272 GTGCTCTGTCTGAATTGCCTAAA 59.247 43.478 0.00 0.00 0.00 1.85
1912 1994 3.753272 TGCTCTGTCTGAATTGCCTAAAC 59.247 43.478 0.00 0.00 0.00 2.01
1913 1995 3.181516 GCTCTGTCTGAATTGCCTAAACG 60.182 47.826 0.00 0.00 0.00 3.60
1914 1996 3.997021 CTCTGTCTGAATTGCCTAAACGT 59.003 43.478 0.00 0.00 0.00 3.99
1915 1997 3.994392 TCTGTCTGAATTGCCTAAACGTC 59.006 43.478 0.00 0.00 0.00 4.34
1916 1998 3.997021 CTGTCTGAATTGCCTAAACGTCT 59.003 43.478 0.00 0.00 0.00 4.18
1917 1999 4.385825 TGTCTGAATTGCCTAAACGTCTT 58.614 39.130 0.00 0.00 0.00 3.01
1918 2000 5.543714 TGTCTGAATTGCCTAAACGTCTTA 58.456 37.500 0.00 0.00 0.00 2.10
1919 2001 6.170506 TGTCTGAATTGCCTAAACGTCTTAT 58.829 36.000 0.00 0.00 0.00 1.73
1920 2002 7.324935 TGTCTGAATTGCCTAAACGTCTTATA 58.675 34.615 0.00 0.00 0.00 0.98
1921 2003 7.820386 TGTCTGAATTGCCTAAACGTCTTATAA 59.180 33.333 0.00 0.00 0.00 0.98
1922 2004 8.662141 GTCTGAATTGCCTAAACGTCTTATAAA 58.338 33.333 0.00 0.00 0.00 1.40
1923 2005 9.221933 TCTGAATTGCCTAAACGTCTTATAAAA 57.778 29.630 0.00 0.00 0.00 1.52
1924 2006 9.490663 CTGAATTGCCTAAACGTCTTATAAAAG 57.509 33.333 0.00 0.00 0.00 2.27
1925 2007 9.221933 TGAATTGCCTAAACGTCTTATAAAAGA 57.778 29.630 0.00 0.00 39.47 2.52
1926 2008 9.704098 GAATTGCCTAAACGTCTTATAAAAGAG 57.296 33.333 0.00 0.00 42.40 2.85
1927 2009 9.444600 AATTGCCTAAACGTCTTATAAAAGAGA 57.555 29.630 0.00 0.00 42.40 3.10
1928 2010 8.836268 TTGCCTAAACGTCTTATAAAAGAGAA 57.164 30.769 0.00 0.00 42.40 2.87
1929 2011 8.248117 TGCCTAAACGTCTTATAAAAGAGAAC 57.752 34.615 0.00 0.00 42.40 3.01
1930 2012 7.874016 TGCCTAAACGTCTTATAAAAGAGAACA 59.126 33.333 0.00 0.00 42.40 3.18
1931 2013 8.381387 GCCTAAACGTCTTATAAAAGAGAACAG 58.619 37.037 0.00 0.00 42.40 3.16
1932 2014 9.635520 CCTAAACGTCTTATAAAAGAGAACAGA 57.364 33.333 0.00 0.00 42.40 3.41
1934 2016 8.535690 AAACGTCTTATAAAAGAGAACAGAGG 57.464 34.615 0.00 0.00 42.40 3.69
1935 2017 6.631962 ACGTCTTATAAAAGAGAACAGAGGG 58.368 40.000 0.00 0.00 42.40 4.30
1936 2018 6.436532 ACGTCTTATAAAAGAGAACAGAGGGA 59.563 38.462 0.00 0.00 42.40 4.20
1937 2019 6.975772 CGTCTTATAAAAGAGAACAGAGGGAG 59.024 42.308 0.00 0.00 42.40 4.30
1938 2020 7.363094 CGTCTTATAAAAGAGAACAGAGGGAGT 60.363 40.741 0.00 0.00 42.40 3.85
1939 2021 8.968969 GTCTTATAAAAGAGAACAGAGGGAGTA 58.031 37.037 0.00 0.00 42.40 2.59
1942 2024 4.993029 AAAGAGAACAGAGGGAGTATCG 57.007 45.455 0.00 0.00 34.37 2.92
1967 2049 4.174762 GTTCTGCTGTTGCTAGGTAGTAC 58.825 47.826 0.00 0.00 40.48 2.73
1968 2050 3.427573 TCTGCTGTTGCTAGGTAGTACA 58.572 45.455 2.06 0.00 40.48 2.90
1979 2061 6.526526 TGCTAGGTAGTACAATGTTGTGAAA 58.473 36.000 8.57 0.00 42.31 2.69
2006 2088 5.239306 TGCAGTAACAGGAAGTGAGATTTTG 59.761 40.000 0.00 0.00 0.00 2.44
2026 2108 7.510675 TTTTGGAGAGGTCTTATTATGTCCT 57.489 36.000 0.00 0.00 0.00 3.85
2065 2155 5.864628 ATTCGAACTAGACCAAAAGCTTC 57.135 39.130 0.00 0.00 0.00 3.86
2077 2167 4.080863 ACCAAAAGCTTCGATCTAGATGGT 60.081 41.667 10.74 5.73 32.86 3.55
2104 2194 8.181573 AGTAATTAGTTGAAATGGTAATGTGCG 58.818 33.333 0.00 0.00 0.00 5.34
2105 2195 3.848272 AGTTGAAATGGTAATGTGCGG 57.152 42.857 0.00 0.00 0.00 5.69
2106 2196 3.153919 AGTTGAAATGGTAATGTGCGGT 58.846 40.909 0.00 0.00 0.00 5.68
2107 2197 3.572255 AGTTGAAATGGTAATGTGCGGTT 59.428 39.130 0.00 0.00 0.00 4.44
2118 2208 3.731136 TGCGGTTGTGCACTTCTC 58.269 55.556 19.41 5.58 40.62 2.87
2173 2263 7.253422 ACATATGAAATGTTTAAGCTGCTGAC 58.747 34.615 10.38 3.49 0.00 3.51
2266 2356 1.676014 CCGAGGGTGTTGTTGGAGATC 60.676 57.143 0.00 0.00 0.00 2.75
2269 2359 1.156736 GGGTGTTGTTGGAGATCACG 58.843 55.000 0.00 0.00 0.00 4.35
2273 2363 2.869801 GTGTTGTTGGAGATCACGACAA 59.130 45.455 15.39 15.39 39.30 3.18
2277 2367 4.001618 TGTTGGAGATCACGACAAATGA 57.998 40.909 7.75 0.00 29.60 2.57
2296 2386 9.631257 ACAAATGATATGACTATGTGGAAATGA 57.369 29.630 0.00 0.00 0.00 2.57
2334 2424 9.052759 AGTTGATTACGTTTATGAAAACTCTGT 57.947 29.630 0.00 0.00 42.39 3.41
2408 2499 2.683768 TGTTAATTGGCTTGTGGGGTT 58.316 42.857 0.00 0.00 0.00 4.11
2409 2500 2.366916 TGTTAATTGGCTTGTGGGGTTG 59.633 45.455 0.00 0.00 0.00 3.77
2455 2555 5.753438 CCAGCGTTCTGTCAGCTATTTATAA 59.247 40.000 0.00 0.00 39.48 0.98
2456 2556 6.425114 CCAGCGTTCTGTCAGCTATTTATAAT 59.575 38.462 0.00 0.00 39.48 1.28
2457 2557 7.598869 CCAGCGTTCTGTCAGCTATTTATAATA 59.401 37.037 0.00 0.00 39.48 0.98
2458 2558 9.144747 CAGCGTTCTGTCAGCTATTTATAATAT 57.855 33.333 0.00 0.00 39.48 1.28
2493 2593 7.201565 GGCATGAGTTTTCTGAAGTATACTCAC 60.202 40.741 19.45 4.60 43.11 3.51
2500 2600 5.752892 TCTGAAGTATACTCACGCTTAGG 57.247 43.478 5.70 0.00 0.00 2.69
2544 2644 3.934579 CCATTTCTTTGTATGCTTTGGGC 59.065 43.478 0.00 0.00 42.22 5.36
2547 2647 6.407299 CCATTTCTTTGTATGCTTTGGGCTAT 60.407 38.462 0.00 0.00 42.39 2.97
2552 2652 6.318648 TCTTTGTATGCTTTGGGCTATTGTAG 59.681 38.462 0.00 0.00 42.39 2.74
2604 2727 3.198409 TCTGTGACACAAGATGCTTGT 57.802 42.857 10.02 6.97 0.00 3.16
2636 2759 1.252904 CCTGGGTGCCTGGTGATTTG 61.253 60.000 0.00 0.00 37.76 2.32
2642 2765 2.545742 GGTGCCTGGTGATTTGTTGTTC 60.546 50.000 0.00 0.00 0.00 3.18
2653 2776 6.797033 GGTGATTTGTTGTTCTACTTCATTCG 59.203 38.462 0.00 0.00 0.00 3.34
2680 2803 7.062371 GTCACTGACATGTGAAACTACATAGTC 59.938 40.741 1.15 0.00 46.77 2.59
2698 2821 1.069500 GTCGTATTGGTTGGTGCACAC 60.069 52.381 20.43 9.10 0.00 3.82
2716 2839 4.282068 CACACACGAGAATTGGAAAACAG 58.718 43.478 0.00 0.00 0.00 3.16
2718 2841 4.201910 ACACACGAGAATTGGAAAACAGTG 60.202 41.667 0.00 0.00 0.00 3.66
2727 2850 6.485313 AGAATTGGAAAACAGTGTGAACGATA 59.515 34.615 0.00 0.00 0.00 2.92
2733 2856 4.345859 AACAGTGTGAACGATAGGGAAA 57.654 40.909 0.00 0.00 43.77 3.13
2762 2885 7.362662 TGTAGCTGCATTTTTCAAGAAGTAAG 58.637 34.615 0.00 0.00 0.00 2.34
2769 2892 6.870439 GCATTTTTCAAGAAGTAAGAATGGCT 59.130 34.615 0.00 0.00 0.00 4.75
2800 2923 7.370383 TGCTCTTTCAACCTCAAATGTATTTC 58.630 34.615 0.00 0.00 0.00 2.17
2802 2925 6.908825 TCTTTCAACCTCAAATGTATTTCCG 58.091 36.000 0.00 0.00 0.00 4.30
2843 2966 9.995003 TGGTGCAATTAAAGTTTAAAGATGAAT 57.005 25.926 11.92 0.00 0.00 2.57
2907 3052 8.484214 AGGAATGCTACTAATTCTGTCAGATA 57.516 34.615 2.68 0.00 34.95 1.98
2942 3087 4.675114 GGCGTTTCTGTTGTGATTTGTAAG 59.325 41.667 0.00 0.00 0.00 2.34
2946 3092 6.018262 CGTTTCTGTTGTGATTTGTAAGAGGA 60.018 38.462 0.00 0.00 0.00 3.71
2947 3093 7.466725 CGTTTCTGTTGTGATTTGTAAGAGGAA 60.467 37.037 0.00 0.00 0.00 3.36
2955 3101 8.062065 TGTGATTTGTAAGAGGAAACAAAACT 57.938 30.769 4.90 0.00 45.69 2.66
2956 3102 8.527810 TGTGATTTGTAAGAGGAAACAAAACTT 58.472 29.630 4.90 0.00 45.69 2.66
3000 3146 7.931407 ACAAATTTCTCAGTTTTGTAAATCCCC 59.069 33.333 0.00 0.00 40.68 4.81
3006 3152 5.134661 TCAGTTTTGTAAATCCCCGACTTT 58.865 37.500 0.00 0.00 0.00 2.66
3007 3153 5.239963 TCAGTTTTGTAAATCCCCGACTTTC 59.760 40.000 0.00 0.00 0.00 2.62
3008 3154 5.009210 CAGTTTTGTAAATCCCCGACTTTCA 59.991 40.000 0.00 0.00 0.00 2.69
3009 3155 5.009310 AGTTTTGTAAATCCCCGACTTTCAC 59.991 40.000 0.00 0.00 0.00 3.18
3011 3157 3.404899 TGTAAATCCCCGACTTTCACAC 58.595 45.455 0.00 0.00 0.00 3.82
3022 3168 3.291585 GACTTTCACACGTTGAAGCATG 58.708 45.455 11.25 0.00 45.22 4.06
3030 3176 3.857665 ACACGTTGAAGCATGACTATACG 59.142 43.478 0.00 2.66 34.56 3.06
3033 3179 5.232202 CACGTTGAAGCATGACTATACGAAT 59.768 40.000 14.20 0.00 33.39 3.34
3042 3188 6.265649 AGCATGACTATACGAATCAGGTAAGT 59.734 38.462 0.00 0.00 0.00 2.24
3054 3200 1.196012 AGGTAAGTGCCTGCTCCTAC 58.804 55.000 0.00 0.00 37.50 3.18
3055 3201 0.902531 GGTAAGTGCCTGCTCCTACA 59.097 55.000 3.31 0.00 0.00 2.74
3057 3203 1.550976 GTAAGTGCCTGCTCCTACACT 59.449 52.381 0.00 0.00 44.96 3.55
3073 3219 1.074405 ACACTCTTGATGGGCATGTGT 59.926 47.619 0.00 0.00 33.83 3.72
3079 3225 3.054508 TCTTGATGGGCATGTGTCATACA 60.055 43.478 0.00 0.00 44.87 2.29
3153 3378 5.185828 GGTAGCATGGAGAAAGTGGAAAATT 59.814 40.000 0.00 0.00 0.00 1.82
3157 3382 6.013984 AGCATGGAGAAAGTGGAAAATTGAAT 60.014 34.615 0.00 0.00 0.00 2.57
3221 3447 2.027192 GCCCACTCTGAAGACAATACCA 60.027 50.000 0.00 0.00 0.00 3.25
3284 3511 7.970614 GGGTCTTCTAACTTGCTTTTGATTATG 59.029 37.037 0.00 0.00 0.00 1.90
3309 3536 5.178096 TGTGGTAATTGTCATCATCTGGT 57.822 39.130 0.00 0.00 0.00 4.00
3335 3563 5.104527 TCGTCTGTTTTGATCCCTATGGAAT 60.105 40.000 0.00 0.00 45.98 3.01
3345 3573 6.430864 TGATCCCTATGGAATTTGTGCTTTA 58.569 36.000 0.00 0.00 45.98 1.85
3383 3618 2.740904 GCTACAATTCCAGACGTACCCC 60.741 54.545 0.00 0.00 0.00 4.95
3436 3671 7.710896 AGGTACGTGTATTACCTTGAAGTATC 58.289 38.462 0.00 0.00 46.09 2.24
3461 3696 5.982516 GGATCTGTAACATTGCTGTAGAGAG 59.017 44.000 0.00 0.00 33.36 3.20
3471 3706 8.934507 ACATTGCTGTAGAGAGTTAATACTTC 57.065 34.615 0.00 0.00 31.45 3.01
3476 3711 9.640963 TGCTGTAGAGAGTTAATACTTCTTTTC 57.359 33.333 0.00 0.00 33.84 2.29
3477 3712 9.640963 GCTGTAGAGAGTTAATACTTCTTTTCA 57.359 33.333 0.00 0.00 33.84 2.69
3564 3799 8.291191 TGGTATGATATTTTGATTGTGCAAGA 57.709 30.769 0.00 0.00 0.00 3.02
3607 3844 7.426929 TTCTTAAGCAGTTTCTGTGAAGATC 57.573 36.000 0.00 0.00 31.33 2.75
3621 3858 2.094906 TGAAGATCATTGCTGTGCTTGC 60.095 45.455 0.00 0.00 0.00 4.01
3638 3875 3.674682 GCTTGCACCTTGTGTTTTGTGTA 60.675 43.478 0.00 0.00 35.75 2.90
3665 3903 1.335324 GGTTGCTACTTGTTGCAGCAG 60.335 52.381 20.10 1.06 44.88 4.24
3676 3914 2.238395 TGTTGCAGCAGTGTATATGGGA 59.762 45.455 0.00 0.00 0.00 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.949754 GCAAGATCTGAATGGGTCAATGA 59.050 43.478 0.00 0.00 35.22 2.57
14 15 7.281774 ACTTTACAATCGATGCAAGATCTGAAT 59.718 33.333 0.00 0.00 0.00 2.57
55 56 7.515166 TGTATAGGGTAGTCTCACTATAGTCCA 59.485 40.741 1.26 0.00 32.65 4.02
68 69 1.402456 CGCCGCATGTATAGGGTAGTC 60.402 57.143 0.00 0.00 0.00 2.59
77 78 1.418342 GACGTTGTCGCCGCATGTAT 61.418 55.000 0.00 0.00 41.18 2.29
78 79 2.048970 ACGTTGTCGCCGCATGTA 60.049 55.556 0.00 0.00 41.18 2.29
147 148 1.136891 ACCACCAGCAAAAGACAAAGC 59.863 47.619 0.00 0.00 0.00 3.51
160 161 2.809601 GCACGCGTAGACCACCAG 60.810 66.667 13.44 0.00 0.00 4.00
163 164 2.558554 ATCCAGCACGCGTAGACCAC 62.559 60.000 13.44 0.00 0.00 4.16
168 169 1.004927 GCTAAAATCCAGCACGCGTAG 60.005 52.381 13.44 7.98 38.93 3.51
171 172 0.447801 AAGCTAAAATCCAGCACGCG 59.552 50.000 3.53 3.53 41.66 6.01
174 175 3.628032 GGTAGGAAGCTAAAATCCAGCAC 59.372 47.826 5.00 0.25 41.66 4.40
220 222 3.056607 CGTGAAAATGAAGCCCCAATCTT 60.057 43.478 0.00 0.00 0.00 2.40
235 237 3.773418 TCACCCCTAATCACGTGAAAA 57.227 42.857 24.13 12.52 32.51 2.29
258 261 2.540101 CCGAATGATTAGCTTCGTCACC 59.460 50.000 0.00 0.00 41.94 4.02
262 265 3.520290 TCACCGAATGATTAGCTTCGT 57.480 42.857 0.00 0.00 41.94 3.85
293 296 0.250295 TAGTGATTAGGCGGCCATGC 60.250 55.000 23.09 7.97 0.00 4.06
330 333 2.204151 AGACCCCTCACCCCCAAG 60.204 66.667 0.00 0.00 0.00 3.61
379 382 5.520376 AATTATGGGATTCTTCAAAGGCG 57.480 39.130 0.00 0.00 0.00 5.52
383 386 7.587037 CCAGCTAATTATGGGATTCTTCAAA 57.413 36.000 0.00 0.00 32.63 2.69
469 472 7.864108 TCATCCATGATTGTAAACGATCTTT 57.136 32.000 10.86 0.00 37.59 2.52
500 503 7.966339 TTTTGGAATGATCTCATCCTTGATT 57.034 32.000 11.56 0.00 35.10 2.57
501 504 7.783119 TCATTTTGGAATGATCTCATCCTTGAT 59.217 33.333 11.56 0.00 45.03 2.57
525 528 7.396339 TCTGGCTTTACTACTAGATCTTTGTCA 59.604 37.037 0.00 0.00 0.00 3.58
529 532 7.964666 AGTCTGGCTTTACTACTAGATCTTT 57.035 36.000 0.00 0.00 0.00 2.52
534 537 6.424883 AGCTAAGTCTGGCTTTACTACTAGA 58.575 40.000 0.00 0.00 35.51 2.43
541 544 6.796705 TTGTTTAGCTAAGTCTGGCTTTAC 57.203 37.500 6.24 0.00 40.38 2.01
547 550 4.636206 GGTGGATTGTTTAGCTAAGTCTGG 59.364 45.833 6.24 0.00 0.00 3.86
555 558 4.098914 TGAAGTGGTGGATTGTTTAGCT 57.901 40.909 0.00 0.00 0.00 3.32
565 568 2.158475 AGAGGCAAAATGAAGTGGTGGA 60.158 45.455 0.00 0.00 0.00 4.02
566 569 2.229784 GAGAGGCAAAATGAAGTGGTGG 59.770 50.000 0.00 0.00 0.00 4.61
567 570 2.886523 TGAGAGGCAAAATGAAGTGGTG 59.113 45.455 0.00 0.00 0.00 4.17
568 571 3.152341 CTGAGAGGCAAAATGAAGTGGT 58.848 45.455 0.00 0.00 0.00 4.16
580 583 2.793288 TTCATCATTGCTGAGAGGCA 57.207 45.000 0.00 0.00 40.74 4.75
581 584 4.097437 TGATTTTCATCATTGCTGAGAGGC 59.903 41.667 0.00 0.00 34.22 4.70
583 586 8.622157 AGTATTGATTTTCATCATTGCTGAGAG 58.378 33.333 0.00 0.00 39.28 3.20
584 587 8.515695 AGTATTGATTTTCATCATTGCTGAGA 57.484 30.769 0.00 0.00 39.28 3.27
585 588 9.661187 GTAGTATTGATTTTCATCATTGCTGAG 57.339 33.333 7.53 0.00 39.28 3.35
586 589 8.623903 GGTAGTATTGATTTTCATCATTGCTGA 58.376 33.333 7.53 0.00 39.28 4.26
587 590 8.407832 TGGTAGTATTGATTTTCATCATTGCTG 58.592 33.333 7.53 0.00 39.28 4.41
615 623 6.518208 TGTGGCAAAAACTTGTTAGTAGTT 57.482 33.333 0.00 0.00 37.43 2.24
619 627 4.932799 GGTTTGTGGCAAAAACTTGTTAGT 59.067 37.500 27.46 0.00 37.60 2.24
652 660 9.081997 GCGAAAACATTATGTTCCATTGATTAA 57.918 29.630 11.24 0.00 40.14 1.40
653 661 7.704472 GGCGAAAACATTATGTTCCATTGATTA 59.296 33.333 11.24 0.00 40.14 1.75
654 662 6.534793 GGCGAAAACATTATGTTCCATTGATT 59.465 34.615 11.24 0.02 40.14 2.57
655 663 6.042143 GGCGAAAACATTATGTTCCATTGAT 58.958 36.000 11.24 0.00 40.14 2.57
656 664 5.184864 AGGCGAAAACATTATGTTCCATTGA 59.815 36.000 11.24 0.00 40.14 2.57
657 665 5.410067 AGGCGAAAACATTATGTTCCATTG 58.590 37.500 11.24 6.27 40.14 2.82
658 666 5.184864 TGAGGCGAAAACATTATGTTCCATT 59.815 36.000 11.24 2.21 40.14 3.16
659 667 4.704540 TGAGGCGAAAACATTATGTTCCAT 59.295 37.500 11.24 1.19 40.14 3.41
660 668 4.075682 TGAGGCGAAAACATTATGTTCCA 58.924 39.130 11.24 0.00 40.14 3.53
661 669 4.083003 TGTGAGGCGAAAACATTATGTTCC 60.083 41.667 11.24 8.08 40.14 3.62
662 670 5.041951 TGTGAGGCGAAAACATTATGTTC 57.958 39.130 11.24 0.00 40.14 3.18
663 671 5.643379 ATGTGAGGCGAAAACATTATGTT 57.357 34.783 4.56 4.56 43.41 2.71
664 672 5.643379 AATGTGAGGCGAAAACATTATGT 57.357 34.783 7.89 0.00 41.49 2.29
665 673 5.227805 CGAAATGTGAGGCGAAAACATTATG 59.772 40.000 9.43 0.00 42.24 1.90
666 674 5.123186 TCGAAATGTGAGGCGAAAACATTAT 59.877 36.000 9.43 3.13 42.24 1.28
667 675 4.452795 TCGAAATGTGAGGCGAAAACATTA 59.547 37.500 9.43 0.00 42.24 1.90
670 678 2.214347 TCGAAATGTGAGGCGAAAACA 58.786 42.857 0.00 0.00 0.00 2.83
672 680 3.972950 TTTCGAAATGTGAGGCGAAAA 57.027 38.095 6.47 0.00 45.91 2.29
676 684 2.480419 ACTTCTTTCGAAATGTGAGGCG 59.520 45.455 11.70 0.00 0.00 5.52
677 685 3.814945 CACTTCTTTCGAAATGTGAGGC 58.185 45.455 22.89 0.00 30.84 4.70
684 692 6.738114 TCAAAGATTGCACTTCTTTCGAAAT 58.262 32.000 11.70 0.00 40.53 2.17
689 697 6.089150 GCTGATTCAAAGATTGCACTTCTTTC 59.911 38.462 17.01 9.63 40.53 2.62
698 706 5.277731 GCTAGGTAGCTGATTCAAAGATTGC 60.278 44.000 4.27 0.00 45.62 3.56
735 747 1.874872 CGGTCCTTAAAGAAAACGGCA 59.125 47.619 0.00 0.00 0.00 5.69
818 830 3.673338 GGCAATTCTTTTGCGGTTTACTC 59.327 43.478 4.42 0.00 45.78 2.59
819 831 3.554129 GGGCAATTCTTTTGCGGTTTACT 60.554 43.478 4.42 0.00 45.78 2.24
820 832 2.734606 GGGCAATTCTTTTGCGGTTTAC 59.265 45.455 4.42 0.00 45.78 2.01
821 833 2.630580 AGGGCAATTCTTTTGCGGTTTA 59.369 40.909 4.42 0.00 45.78 2.01
822 834 1.416030 AGGGCAATTCTTTTGCGGTTT 59.584 42.857 4.42 0.00 45.78 3.27
825 837 0.456653 CGAGGGCAATTCTTTTGCGG 60.457 55.000 4.42 0.00 45.78 5.69
839 919 5.636965 GTGTCTGAATGATGATTATCGAGGG 59.363 44.000 0.00 0.00 36.04 4.30
850 931 2.606725 GAGAAGGCGTGTCTGAATGATG 59.393 50.000 0.00 0.00 0.00 3.07
861 942 4.143263 ACGTAAATAAAACGAGAAGGCGTG 60.143 41.667 2.27 0.00 44.86 5.34
920 1001 1.893801 GGGAGAAGGAAGACGAGACAA 59.106 52.381 0.00 0.00 0.00 3.18
1094 1175 2.436292 CGACGAGACCGGAGACCT 60.436 66.667 9.46 0.00 40.78 3.85
1143 1224 4.292178 GCATCGGCGAGGGAGGAG 62.292 72.222 23.65 4.12 0.00 3.69
1253 1334 3.894547 TTGGGTTTCGCCTCCTCGC 62.895 63.158 0.00 0.00 37.43 5.03
1425 1506 3.984186 CTCCGCCTCCTCCTTGGGA 62.984 68.421 0.00 0.00 36.20 4.37
1740 1822 9.905713 AAATCCAGTCATAAACTAATTGCTCTA 57.094 29.630 0.00 0.00 36.07 2.43
1756 1838 5.698741 ATGGTATGACAGAAATCCAGTCA 57.301 39.130 8.23 8.23 45.26 3.41
1769 1851 7.336931 ACAAATCACTACTGGAAATGGTATGAC 59.663 37.037 0.00 0.00 0.00 3.06
1772 1854 8.650143 AAACAAATCACTACTGGAAATGGTAT 57.350 30.769 0.00 0.00 0.00 2.73
1835 1917 8.422566 ACGTCTTATAAAATAGAAAGGAGGGAG 58.577 37.037 0.00 0.00 0.00 4.30
1836 1918 8.315220 ACGTCTTATAAAATAGAAAGGAGGGA 57.685 34.615 0.00 0.00 0.00 4.20
1837 1919 8.959705 AACGTCTTATAAAATAGAAAGGAGGG 57.040 34.615 0.00 0.00 0.00 4.30
1848 1930 8.995220 TCAGCTGTACAAAACGTCTTATAAAAT 58.005 29.630 14.67 0.00 0.00 1.82
1849 1931 8.277713 GTCAGCTGTACAAAACGTCTTATAAAA 58.722 33.333 14.67 0.00 0.00 1.52
1850 1932 7.438757 TGTCAGCTGTACAAAACGTCTTATAAA 59.561 33.333 14.67 0.00 0.00 1.40
1851 1933 6.924612 TGTCAGCTGTACAAAACGTCTTATAA 59.075 34.615 14.67 0.00 0.00 0.98
1852 1934 6.448852 TGTCAGCTGTACAAAACGTCTTATA 58.551 36.000 14.67 0.00 0.00 0.98
1853 1935 5.294356 TGTCAGCTGTACAAAACGTCTTAT 58.706 37.500 14.67 0.00 0.00 1.73
1854 1936 4.684877 TGTCAGCTGTACAAAACGTCTTA 58.315 39.130 14.67 0.00 0.00 2.10
1855 1937 3.527533 TGTCAGCTGTACAAAACGTCTT 58.472 40.909 14.67 0.00 0.00 3.01
1856 1938 3.173668 TGTCAGCTGTACAAAACGTCT 57.826 42.857 14.67 0.00 0.00 4.18
1857 1939 4.025229 TCAATGTCAGCTGTACAAAACGTC 60.025 41.667 14.67 0.00 0.00 4.34
1858 1940 3.874543 TCAATGTCAGCTGTACAAAACGT 59.125 39.130 14.67 1.45 0.00 3.99
1859 1941 4.466567 TCAATGTCAGCTGTACAAAACG 57.533 40.909 14.67 7.26 0.00 3.60
1860 1942 5.682862 CAGTTCAATGTCAGCTGTACAAAAC 59.317 40.000 14.67 18.43 0.00 2.43
1861 1943 5.356751 ACAGTTCAATGTCAGCTGTACAAAA 59.643 36.000 14.67 9.84 38.46 2.44
1862 1944 4.881273 ACAGTTCAATGTCAGCTGTACAAA 59.119 37.500 14.67 5.84 38.46 2.83
1863 1945 4.450976 ACAGTTCAATGTCAGCTGTACAA 58.549 39.130 14.67 0.00 38.46 2.41
1864 1946 4.071961 ACAGTTCAATGTCAGCTGTACA 57.928 40.909 14.67 16.38 38.46 2.90
1865 1947 5.424121 AAACAGTTCAATGTCAGCTGTAC 57.576 39.130 14.67 11.14 39.19 2.90
1866 1948 5.356751 ACAAAACAGTTCAATGTCAGCTGTA 59.643 36.000 14.67 4.66 39.19 2.74
1867 1949 4.158394 ACAAAACAGTTCAATGTCAGCTGT 59.842 37.500 14.67 0.00 41.51 4.40
1868 1950 4.501559 CACAAAACAGTTCAATGTCAGCTG 59.498 41.667 7.63 7.63 31.50 4.24
1869 1951 4.675510 CACAAAACAGTTCAATGTCAGCT 58.324 39.130 0.00 0.00 31.50 4.24
1870 1952 3.243643 GCACAAAACAGTTCAATGTCAGC 59.756 43.478 0.00 0.00 31.50 4.26
1871 1953 4.675510 AGCACAAAACAGTTCAATGTCAG 58.324 39.130 0.00 0.00 31.50 3.51
1872 1954 4.398988 AGAGCACAAAACAGTTCAATGTCA 59.601 37.500 0.00 0.00 31.50 3.58
1873 1955 4.736793 CAGAGCACAAAACAGTTCAATGTC 59.263 41.667 0.00 0.00 31.50 3.06
1874 1956 4.158394 ACAGAGCACAAAACAGTTCAATGT 59.842 37.500 0.00 0.00 33.96 2.71
1875 1957 4.675510 ACAGAGCACAAAACAGTTCAATG 58.324 39.130 0.00 0.00 0.00 2.82
1876 1958 4.641989 AGACAGAGCACAAAACAGTTCAAT 59.358 37.500 0.00 0.00 0.00 2.57
1877 1959 4.009675 AGACAGAGCACAAAACAGTTCAA 58.990 39.130 0.00 0.00 0.00 2.69
1878 1960 3.374988 CAGACAGAGCACAAAACAGTTCA 59.625 43.478 0.00 0.00 0.00 3.18
1879 1961 3.623060 TCAGACAGAGCACAAAACAGTTC 59.377 43.478 0.00 0.00 0.00 3.01
1880 1962 3.609853 TCAGACAGAGCACAAAACAGTT 58.390 40.909 0.00 0.00 0.00 3.16
1881 1963 3.266510 TCAGACAGAGCACAAAACAGT 57.733 42.857 0.00 0.00 0.00 3.55
1882 1964 4.825546 ATTCAGACAGAGCACAAAACAG 57.174 40.909 0.00 0.00 0.00 3.16
1883 1965 4.734402 GCAATTCAGACAGAGCACAAAACA 60.734 41.667 0.00 0.00 0.00 2.83
1884 1966 3.732721 GCAATTCAGACAGAGCACAAAAC 59.267 43.478 0.00 0.00 0.00 2.43
1885 1967 3.243501 GGCAATTCAGACAGAGCACAAAA 60.244 43.478 0.00 0.00 0.00 2.44
1886 1968 2.294233 GGCAATTCAGACAGAGCACAAA 59.706 45.455 0.00 0.00 0.00 2.83
1887 1969 1.881973 GGCAATTCAGACAGAGCACAA 59.118 47.619 0.00 0.00 0.00 3.33
1888 1970 1.072806 AGGCAATTCAGACAGAGCACA 59.927 47.619 0.00 0.00 0.00 4.57
1889 1971 1.818642 AGGCAATTCAGACAGAGCAC 58.181 50.000 0.00 0.00 0.00 4.40
1890 1972 3.701205 TTAGGCAATTCAGACAGAGCA 57.299 42.857 0.00 0.00 0.00 4.26
1891 1973 3.181516 CGTTTAGGCAATTCAGACAGAGC 60.182 47.826 0.00 0.00 0.00 4.09
1892 1974 3.997021 ACGTTTAGGCAATTCAGACAGAG 59.003 43.478 0.00 0.00 0.00 3.35
1893 1975 3.994392 GACGTTTAGGCAATTCAGACAGA 59.006 43.478 0.00 0.00 0.00 3.41
1894 1976 3.997021 AGACGTTTAGGCAATTCAGACAG 59.003 43.478 0.00 0.00 0.00 3.51
1895 1977 4.002906 AGACGTTTAGGCAATTCAGACA 57.997 40.909 0.00 0.00 0.00 3.41
1896 1978 6.663944 ATAAGACGTTTAGGCAATTCAGAC 57.336 37.500 0.00 0.00 0.00 3.51
1897 1979 8.780846 TTTATAAGACGTTTAGGCAATTCAGA 57.219 30.769 0.00 0.00 0.00 3.27
1898 1980 9.490663 CTTTTATAAGACGTTTAGGCAATTCAG 57.509 33.333 0.00 0.00 32.92 3.02
1899 1981 9.221933 TCTTTTATAAGACGTTTAGGCAATTCA 57.778 29.630 0.00 0.00 35.49 2.57
1900 1982 9.704098 CTCTTTTATAAGACGTTTAGGCAATTC 57.296 33.333 0.00 0.00 35.49 2.17
1901 1983 9.444600 TCTCTTTTATAAGACGTTTAGGCAATT 57.555 29.630 0.00 0.00 35.49 2.32
1902 1984 9.444600 TTCTCTTTTATAAGACGTTTAGGCAAT 57.555 29.630 0.00 0.00 35.49 3.56
1903 1985 8.715088 GTTCTCTTTTATAAGACGTTTAGGCAA 58.285 33.333 0.00 0.00 35.49 4.52
1904 1986 7.874016 TGTTCTCTTTTATAAGACGTTTAGGCA 59.126 33.333 0.00 0.00 35.49 4.75
1905 1987 8.248117 TGTTCTCTTTTATAAGACGTTTAGGC 57.752 34.615 0.00 0.00 35.49 3.93
1906 1988 9.635520 TCTGTTCTCTTTTATAAGACGTTTAGG 57.364 33.333 0.00 0.00 35.49 2.69
1908 1990 9.635520 CCTCTGTTCTCTTTTATAAGACGTTTA 57.364 33.333 0.00 0.00 35.49 2.01
1909 1991 7.603024 CCCTCTGTTCTCTTTTATAAGACGTTT 59.397 37.037 0.00 0.00 35.49 3.60
1910 1992 7.039223 TCCCTCTGTTCTCTTTTATAAGACGTT 60.039 37.037 0.00 0.00 35.49 3.99
1911 1993 6.436532 TCCCTCTGTTCTCTTTTATAAGACGT 59.563 38.462 0.00 0.00 35.49 4.34
1912 1994 6.864342 TCCCTCTGTTCTCTTTTATAAGACG 58.136 40.000 0.00 0.00 35.49 4.18
1913 1995 7.842982 ACTCCCTCTGTTCTCTTTTATAAGAC 58.157 38.462 0.00 0.00 35.49 3.01
1914 1996 9.716556 ATACTCCCTCTGTTCTCTTTTATAAGA 57.283 33.333 0.00 0.00 38.06 2.10
1915 1997 9.974980 GATACTCCCTCTGTTCTCTTTTATAAG 57.025 37.037 0.00 0.00 0.00 1.73
1916 1998 8.630917 CGATACTCCCTCTGTTCTCTTTTATAA 58.369 37.037 0.00 0.00 0.00 0.98
1917 1999 7.230913 CCGATACTCCCTCTGTTCTCTTTTATA 59.769 40.741 0.00 0.00 0.00 0.98
1918 2000 6.041069 CCGATACTCCCTCTGTTCTCTTTTAT 59.959 42.308 0.00 0.00 0.00 1.40
1919 2001 5.360144 CCGATACTCCCTCTGTTCTCTTTTA 59.640 44.000 0.00 0.00 0.00 1.52
1920 2002 4.160626 CCGATACTCCCTCTGTTCTCTTTT 59.839 45.833 0.00 0.00 0.00 2.27
1921 2003 3.702045 CCGATACTCCCTCTGTTCTCTTT 59.298 47.826 0.00 0.00 0.00 2.52
1922 2004 3.292460 CCGATACTCCCTCTGTTCTCTT 58.708 50.000 0.00 0.00 0.00 2.85
1923 2005 2.242708 ACCGATACTCCCTCTGTTCTCT 59.757 50.000 0.00 0.00 0.00 3.10
1924 2006 2.359531 CACCGATACTCCCTCTGTTCTC 59.640 54.545 0.00 0.00 0.00 2.87
1925 2007 2.291670 ACACCGATACTCCCTCTGTTCT 60.292 50.000 0.00 0.00 0.00 3.01
1926 2008 2.100989 ACACCGATACTCCCTCTGTTC 58.899 52.381 0.00 0.00 0.00 3.18
1927 2009 2.233305 ACACCGATACTCCCTCTGTT 57.767 50.000 0.00 0.00 0.00 3.16
1928 2010 2.100989 GAACACCGATACTCCCTCTGT 58.899 52.381 0.00 0.00 0.00 3.41
1929 2011 2.099921 CAGAACACCGATACTCCCTCTG 59.900 54.545 0.00 0.00 0.00 3.35
1930 2012 2.379972 CAGAACACCGATACTCCCTCT 58.620 52.381 0.00 0.00 0.00 3.69
1931 2013 1.202428 GCAGAACACCGATACTCCCTC 60.202 57.143 0.00 0.00 0.00 4.30
1932 2014 0.824759 GCAGAACACCGATACTCCCT 59.175 55.000 0.00 0.00 0.00 4.20
1933 2015 0.824759 AGCAGAACACCGATACTCCC 59.175 55.000 0.00 0.00 0.00 4.30
1934 2016 1.204941 ACAGCAGAACACCGATACTCC 59.795 52.381 0.00 0.00 0.00 3.85
1935 2017 2.656560 ACAGCAGAACACCGATACTC 57.343 50.000 0.00 0.00 0.00 2.59
1936 2018 2.688507 CAACAGCAGAACACCGATACT 58.311 47.619 0.00 0.00 0.00 2.12
1937 2019 1.128692 GCAACAGCAGAACACCGATAC 59.871 52.381 0.00 0.00 0.00 2.24
1938 2020 1.001974 AGCAACAGCAGAACACCGATA 59.998 47.619 0.00 0.00 0.00 2.92
1939 2021 0.250467 AGCAACAGCAGAACACCGAT 60.250 50.000 0.00 0.00 0.00 4.18
1942 2024 1.160137 CCTAGCAACAGCAGAACACC 58.840 55.000 0.00 0.00 0.00 4.16
1967 2049 7.231705 TGTTACTGCAAATTTCACAACATTG 57.768 32.000 0.00 0.00 0.00 2.82
1968 2050 6.479660 CCTGTTACTGCAAATTTCACAACATT 59.520 34.615 0.00 0.00 0.00 2.71
1979 2061 4.973168 TCTCACTTCCTGTTACTGCAAAT 58.027 39.130 0.00 0.00 0.00 2.32
2006 2088 6.325286 ACTGAAGGACATAATAAGACCTCTCC 59.675 42.308 0.00 0.00 30.87 3.71
2026 2108 6.704493 AGTTCGAATTAGTAACAAGCACTGAA 59.296 34.615 0.00 0.00 0.00 3.02
2094 2184 1.953017 TGCACAACCGCACATTACC 59.047 52.632 0.00 0.00 36.86 2.85
2101 2191 0.391228 TAGAGAAGTGCACAACCGCA 59.609 50.000 21.04 0.00 40.32 5.69
2102 2192 1.394917 CATAGAGAAGTGCACAACCGC 59.605 52.381 21.04 9.05 0.00 5.68
2103 2193 2.688507 ACATAGAGAAGTGCACAACCG 58.311 47.619 21.04 1.21 0.00 4.44
2104 2194 5.215160 CAAAACATAGAGAAGTGCACAACC 58.785 41.667 21.04 7.33 0.00 3.77
2105 2195 4.676924 GCAAAACATAGAGAAGTGCACAAC 59.323 41.667 21.04 12.26 0.00 3.32
2106 2196 4.554526 CGCAAAACATAGAGAAGTGCACAA 60.555 41.667 21.04 0.00 0.00 3.33
2107 2197 3.058983 CGCAAAACATAGAGAAGTGCACA 60.059 43.478 21.04 0.00 0.00 4.57
2118 2208 2.095567 ACTGCAGAAGCGCAAAACATAG 60.096 45.455 23.35 1.83 46.23 2.23
2163 2253 2.355513 CCTTGGACTATGTCAGCAGCTT 60.356 50.000 0.00 0.00 33.68 3.74
2173 2263 6.597672 TGCAGTTAAATGTACCTTGGACTATG 59.402 38.462 4.65 0.00 0.00 2.23
2266 2356 6.701400 TCCACATAGTCATATCATTTGTCGTG 59.299 38.462 0.00 0.00 0.00 4.35
2269 2359 9.888878 CATTTCCACATAGTCATATCATTTGTC 57.111 33.333 0.00 0.00 0.00 3.18
2277 2367 8.600668 AGCATAGTCATTTCCACATAGTCATAT 58.399 33.333 0.00 0.00 0.00 1.78
2374 2465 6.003950 GCCAATTAACATAGGCCATCTAAGA 58.996 40.000 5.01 0.00 41.25 2.10
2398 2489 1.242076 CTTCTGCTCAACCCCACAAG 58.758 55.000 0.00 0.00 0.00 3.16
2408 2499 2.910688 AGTTTCGGAACTTCTGCTCA 57.089 45.000 2.29 0.00 43.48 4.26
2409 2500 3.866327 GGATAGTTTCGGAACTTCTGCTC 59.134 47.826 15.75 4.59 43.48 4.26
2455 2555 9.887629 CAGAAAACTCATGCCATCTCTATATAT 57.112 33.333 0.00 0.00 0.00 0.86
2456 2556 9.093458 TCAGAAAACTCATGCCATCTCTATATA 57.907 33.333 0.00 0.00 0.00 0.86
2457 2557 7.971201 TCAGAAAACTCATGCCATCTCTATAT 58.029 34.615 0.00 0.00 0.00 0.86
2458 2558 7.365497 TCAGAAAACTCATGCCATCTCTATA 57.635 36.000 0.00 0.00 0.00 1.31
2459 2559 6.244552 TCAGAAAACTCATGCCATCTCTAT 57.755 37.500 0.00 0.00 0.00 1.98
2468 2568 7.463383 CGTGAGTATACTTCAGAAAACTCATGC 60.463 40.741 6.88 8.27 43.55 4.06
2493 2593 4.113354 GTTTCCAGTGTCTATCCTAAGCG 58.887 47.826 0.00 0.00 0.00 4.68
2500 2600 5.172205 GGTTCTCTGTTTCCAGTGTCTATC 58.828 45.833 0.00 0.00 39.82 2.08
2544 2644 5.049818 GCCAAGCTAACAGATGCTACAATAG 60.050 44.000 0.00 0.00 38.75 1.73
2547 2647 3.009723 GCCAAGCTAACAGATGCTACAA 58.990 45.455 0.00 0.00 38.75 2.41
2552 2652 1.403323 GAAGGCCAAGCTAACAGATGC 59.597 52.381 5.01 0.00 0.00 3.91
2555 2655 1.977854 TGAGAAGGCCAAGCTAACAGA 59.022 47.619 5.01 0.00 0.00 3.41
2566 2666 2.746362 CAGAACTGTGAATGAGAAGGCC 59.254 50.000 0.00 0.00 0.00 5.19
2604 2727 0.558712 ACCCAGGCCCTAACAACAAA 59.441 50.000 0.00 0.00 0.00 2.83
2630 2753 6.485313 ACCGAATGAAGTAGAACAACAAATCA 59.515 34.615 0.00 0.00 0.00 2.57
2636 2759 4.989168 AGTGACCGAATGAAGTAGAACAAC 59.011 41.667 0.00 0.00 0.00 3.32
2642 2765 4.174411 TGTCAGTGACCGAATGAAGTAG 57.826 45.455 20.43 0.00 0.00 2.57
2680 2803 0.947960 TGTGTGCACCAACCAATACG 59.052 50.000 15.69 0.00 0.00 3.06
2698 2821 4.035091 TCACACTGTTTTCCAATTCTCGTG 59.965 41.667 0.00 0.00 0.00 4.35
2708 2831 3.435671 CCCTATCGTTCACACTGTTTTCC 59.564 47.826 0.00 0.00 0.00 3.13
2716 2839 6.920569 ACATATTTTCCCTATCGTTCACAC 57.079 37.500 0.00 0.00 0.00 3.82
2718 2841 6.929606 AGCTACATATTTTCCCTATCGTTCAC 59.070 38.462 0.00 0.00 0.00 3.18
2727 2850 6.796785 AAAATGCAGCTACATATTTTCCCT 57.203 33.333 0.00 0.00 29.45 4.20
2733 2856 8.526147 ACTTCTTGAAAAATGCAGCTACATATT 58.474 29.630 0.00 0.00 0.00 1.28
2762 2885 4.194640 TGAAAGAGCATGAGTAGCCATTC 58.805 43.478 0.00 0.00 0.00 2.67
2769 2892 4.890158 TGAGGTTGAAAGAGCATGAGTA 57.110 40.909 0.00 0.00 0.00 2.59
2800 2923 5.007994 GCACCATGCATCGAAGATATCGG 62.008 52.174 0.00 0.00 46.75 4.18
2802 2925 3.736530 GCACCATGCATCGAAGATATC 57.263 47.619 0.00 0.00 44.26 1.63
2817 2940 9.995003 ATTCATCTTTAAACTTTAATTGCACCA 57.005 25.926 0.00 0.00 0.00 4.17
2907 3052 9.567848 CACAACAGAAACGCCTAATTTTTATAT 57.432 29.630 0.00 0.00 0.00 0.86
2913 3058 5.705609 ATCACAACAGAAACGCCTAATTT 57.294 34.783 0.00 0.00 0.00 1.82
2915 3060 5.009610 ACAAATCACAACAGAAACGCCTAAT 59.990 36.000 0.00 0.00 0.00 1.73
2923 3068 7.873719 TTCCTCTTACAAATCACAACAGAAA 57.126 32.000 0.00 0.00 0.00 2.52
2969 3115 8.850454 TTACAAAACTGAGAAATTTGTACTGC 57.150 30.769 16.33 0.00 44.62 4.40
3000 3146 1.326245 TGCTTCAACGTGTGAAAGTCG 59.674 47.619 12.17 4.75 45.67 4.18
3006 3152 2.238942 AGTCATGCTTCAACGTGTGA 57.761 45.000 0.00 0.00 0.00 3.58
3007 3153 4.259411 CGTATAGTCATGCTTCAACGTGTG 60.259 45.833 0.00 0.00 0.00 3.82
3008 3154 3.857665 CGTATAGTCATGCTTCAACGTGT 59.142 43.478 0.00 0.00 0.00 4.49
3009 3155 4.102649 TCGTATAGTCATGCTTCAACGTG 58.897 43.478 0.00 0.00 31.66 4.49
3011 3157 5.458779 TGATTCGTATAGTCATGCTTCAACG 59.541 40.000 0.00 0.00 0.00 4.10
3022 3168 5.009811 AGGCACTTACCTGATTCGTATAGTC 59.990 44.000 0.00 0.00 39.13 2.59
3042 3188 0.610174 CAAGAGTGTAGGAGCAGGCA 59.390 55.000 0.00 0.00 0.00 4.75
3054 3200 1.741706 GACACATGCCCATCAAGAGTG 59.258 52.381 0.00 0.00 34.39 3.51
3055 3201 1.352017 TGACACATGCCCATCAAGAGT 59.648 47.619 0.00 0.00 0.00 3.24
3057 3203 2.812836 ATGACACATGCCCATCAAGA 57.187 45.000 0.00 0.00 0.00 3.02
3073 3219 4.518970 GGCCTTTCTTTGACACTTGTATGA 59.481 41.667 0.00 0.00 0.00 2.15
3079 3225 5.118286 CAAATTGGCCTTTCTTTGACACTT 58.882 37.500 3.32 0.00 31.76 3.16
3153 3378 7.329471 GTGCTCGCATATCTATGTAGAAATTCA 59.671 37.037 0.00 0.00 35.69 2.57
3157 3382 6.016276 TCAGTGCTCGCATATCTATGTAGAAA 60.016 38.462 0.00 0.00 35.69 2.52
3174 3399 6.149474 ACTTGGTACACATAATTTCAGTGCTC 59.851 38.462 0.00 0.00 39.29 4.26
3221 3447 8.246871 GCTTCAATAATCAGAGGTTAAAGCTTT 58.753 33.333 17.30 17.30 34.18 3.51
3284 3511 6.071952 ACCAGATGATGACAATTACCACAAAC 60.072 38.462 0.00 0.00 0.00 2.93
3309 3536 4.941263 CCATAGGGATCAAAACAGACGAAA 59.059 41.667 0.00 0.00 35.59 3.46
3335 3563 5.860941 TCAGGATGGTTTTAAAGCACAAA 57.139 34.783 11.88 0.00 42.32 2.83
3345 3573 4.406456 TGTAGCACAATCAGGATGGTTTT 58.594 39.130 0.00 0.00 34.28 2.43
3376 3611 0.250553 TTCACAGGCAAAGGGGTACG 60.251 55.000 0.00 0.00 0.00 3.67
3383 3618 3.381272 TCTCCAAACTTTCACAGGCAAAG 59.619 43.478 0.00 0.00 36.97 2.77
3436 3671 4.682787 TCTACAGCAATGTTACAGATCCG 58.317 43.478 0.00 0.00 0.00 4.18
3471 3706 6.703165 CCAAAATCTGGTTCTTCCTTGAAAAG 59.297 38.462 0.00 0.00 41.46 2.27
3547 3782 9.638239 GGTAAAATCTCTTGCACAATCAAAATA 57.362 29.630 0.00 0.00 0.00 1.40
3591 3828 5.048921 ACAGCAATGATCTTCACAGAAACTG 60.049 40.000 0.00 0.00 37.52 3.16
3621 3858 6.183360 CCAAAACATACACAAAACACAAGGTG 60.183 38.462 0.00 0.00 39.75 4.00
3638 3875 4.119136 GCAACAAGTAGCAACCAAAACAT 58.881 39.130 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.