Multiple sequence alignment - TraesCS4A01G249900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G249900 chr4A 100.000 3391 0 0 1 3391 560969450 560972840 0.000000e+00 6263.0
1 TraesCS4A01G249900 chr4D 93.951 1620 62 12 876 2467 39356654 39358265 0.000000e+00 2416.0
2 TraesCS4A01G249900 chr4D 93.606 563 30 2 2464 3026 39358969 39359525 0.000000e+00 835.0
3 TraesCS4A01G249900 chr4D 90.573 541 32 10 1 527 39354625 39355160 0.000000e+00 699.0
4 TraesCS4A01G249900 chr4D 96.154 78 3 0 630 707 39356436 39356513 9.880000e-26 128.0
5 TraesCS4A01G249900 chr4D 86.207 87 9 3 705 791 98925302 98925219 1.300000e-14 91.6
6 TraesCS4A01G249900 chr4B 92.991 1655 82 11 838 2467 57796475 57794830 0.000000e+00 2383.0
7 TraesCS4A01G249900 chr4B 93.006 529 30 2 2498 3026 57793790 57793269 0.000000e+00 765.0
8 TraesCS4A01G249900 chr4B 92.875 407 22 4 1 404 57800782 57800380 4.880000e-163 584.0
9 TraesCS4A01G249900 chr4B 89.262 149 10 6 562 707 57796912 57796767 7.470000e-42 182.0
10 TraesCS4A01G249900 chr4B 91.463 82 6 1 710 791 493042976 493042896 9.950000e-21 111.0
11 TraesCS4A01G249900 chr7B 83.486 1526 206 25 955 2456 747890606 747892109 0.000000e+00 1380.0
12 TraesCS4A01G249900 chr7B 85.667 1207 150 16 1272 2460 748802144 748800943 0.000000e+00 1249.0
13 TraesCS4A01G249900 chr7B 85.805 944 116 13 1526 2458 748392042 748391106 0.000000e+00 985.0
14 TraesCS4A01G249900 chr7B 73.241 796 175 22 1501 2290 745217999 745217236 4.340000e-64 255.0
15 TraesCS4A01G249900 chr7B 71.148 714 173 22 1602 2291 748608543 748609247 2.730000e-31 147.0
16 TraesCS4A01G249900 chr7B 83.333 96 13 3 513 607 734909234 734909327 6.030000e-13 86.1
17 TraesCS4A01G249900 chr7B 83.908 87 14 0 511 597 193955846 193955932 2.170000e-12 84.2
18 TraesCS4A01G249900 chr7D 85.116 692 82 11 1785 2460 633127293 633127979 0.000000e+00 688.0
19 TraesCS4A01G249900 chr7D 76.011 742 153 20 1346 2077 632733239 632732513 8.950000e-96 361.0
20 TraesCS4A01G249900 chr7D 90.588 85 8 0 513 597 526443052 526443136 2.770000e-21 113.0
21 TraesCS4A01G249900 chr7D 85.714 84 10 2 708 791 134449072 134449153 1.680000e-13 87.9
22 TraesCS4A01G249900 chr7A 71.681 565 142 14 1602 2151 734889833 734889272 1.270000e-29 141.0
23 TraesCS4A01G249900 chr7A 87.654 81 9 1 711 791 496969512 496969433 3.600000e-15 93.5
24 TraesCS4A01G249900 chr5A 88.889 81 8 1 711 791 353336930 353336851 7.740000e-17 99.0
25 TraesCS4A01G249900 chr1D 84.314 102 14 2 515 615 295184691 295184591 7.740000e-17 99.0
26 TraesCS4A01G249900 chr5D 82.301 113 16 4 509 619 473790102 473789992 1.000000e-15 95.3
27 TraesCS4A01G249900 chr5D 86.792 53 7 0 3251 3303 328610428 328610480 3.650000e-05 60.2
28 TraesCS4A01G249900 chr6A 84.375 96 14 1 512 607 298563164 298563070 3.600000e-15 93.5
29 TraesCS4A01G249900 chr5B 83.333 102 15 2 509 610 580833529 580833430 3.600000e-15 93.5
30 TraesCS4A01G249900 chr5B 84.375 96 11 4 705 799 400521341 400521433 1.300000e-14 91.6
31 TraesCS4A01G249900 chr3A 86.905 84 10 1 708 791 49466391 49466309 3.600000e-15 93.5
32 TraesCS4A01G249900 chr1B 83.333 102 15 2 515 615 396594852 396594752 3.600000e-15 93.5
33 TraesCS4A01G249900 chr6D 85.227 88 12 1 515 602 472958712 472958626 4.660000e-14 89.8
34 TraesCS4A01G249900 chr6D 84.524 84 12 1 708 791 163926711 163926629 7.800000e-12 82.4
35 TraesCS4A01G249900 chr2A 85.366 82 11 1 710 791 52458944 52458864 2.170000e-12 84.2
36 TraesCS4A01G249900 chr3B 100.000 29 0 0 3276 3304 12661500 12661528 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G249900 chr4A 560969450 560972840 3390 False 6263.0 6263 100.0000 1 3391 1 chr4A.!!$F1 3390
1 TraesCS4A01G249900 chr4D 39354625 39359525 4900 False 1019.5 2416 93.5710 1 3026 4 chr4D.!!$F1 3025
2 TraesCS4A01G249900 chr4B 57793269 57800782 7513 True 978.5 2383 92.0335 1 3026 4 chr4B.!!$R2 3025
3 TraesCS4A01G249900 chr7B 747890606 747892109 1503 False 1380.0 1380 83.4860 955 2456 1 chr7B.!!$F3 1501
4 TraesCS4A01G249900 chr7B 748800943 748802144 1201 True 1249.0 1249 85.6670 1272 2460 1 chr7B.!!$R3 1188
5 TraesCS4A01G249900 chr7B 748391106 748392042 936 True 985.0 985 85.8050 1526 2458 1 chr7B.!!$R2 932
6 TraesCS4A01G249900 chr7B 745217236 745217999 763 True 255.0 255 73.2410 1501 2290 1 chr7B.!!$R1 789
7 TraesCS4A01G249900 chr7D 633127293 633127979 686 False 688.0 688 85.1160 1785 2460 1 chr7D.!!$F3 675
8 TraesCS4A01G249900 chr7D 632732513 632733239 726 True 361.0 361 76.0110 1346 2077 1 chr7D.!!$R1 731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 380 0.381801 ACATGATTCCCAAATCGCGC 59.618 50.0 0.0 0.0 43.61 6.86 F
1028 5741 0.248949 GCGGTCGTTCCCTAGCTTAG 60.249 60.0 0.0 0.0 0.00 2.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1540 6273 0.767375 TTTGAGAGGAAGGTGCAGCT 59.233 50.0 13.85 13.85 0.0 4.24 R
2794 8560 0.172578 CAAGATCACGCGGGTAGACA 59.827 55.0 8.89 0.00 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 4.755123 GGCATGTAACTTAATCATACGGCT 59.245 41.667 0.00 0.00 0.00 5.52
200 202 3.761311 AAAAGTCCTAGCTACTCGTCG 57.239 47.619 0.00 0.00 0.00 5.12
214 216 4.416505 ACTCGTCGGTTAAACTAGACAG 57.583 45.455 0.00 0.00 33.56 3.51
299 306 6.398517 GCGGAAATGATTAACACGTTTCAAAG 60.399 38.462 20.62 15.21 41.89 2.77
353 363 2.469826 CGCTAATGATCAGCCGTAACA 58.530 47.619 0.09 0.00 35.53 2.41
370 380 0.381801 ACATGATTCCCAAATCGCGC 59.618 50.000 0.00 0.00 43.61 6.86
431 2052 4.201920 CGAAATCGTCCTCTGTACATCTGA 60.202 45.833 0.00 0.00 34.11 3.27
536 3887 7.894364 ACTAGTACTCCCTCAGTCTTGAAATAA 59.106 37.037 0.00 0.00 36.43 1.40
537 3888 7.554959 AGTACTCCCTCAGTCTTGAAATAAA 57.445 36.000 0.00 0.00 36.43 1.40
538 3889 8.152023 AGTACTCCCTCAGTCTTGAAATAAAT 57.848 34.615 0.00 0.00 36.43 1.40
539 3890 8.043710 AGTACTCCCTCAGTCTTGAAATAAATG 58.956 37.037 0.00 0.00 36.43 2.32
540 3891 6.784031 ACTCCCTCAGTCTTGAAATAAATGT 58.216 36.000 0.00 0.00 31.69 2.71
541 3892 6.881602 ACTCCCTCAGTCTTGAAATAAATGTC 59.118 38.462 0.00 0.00 31.69 3.06
542 3893 7.020827 TCCCTCAGTCTTGAAATAAATGTCT 57.979 36.000 0.00 0.00 31.69 3.41
543 3894 7.461749 TCCCTCAGTCTTGAAATAAATGTCTT 58.538 34.615 0.00 0.00 31.69 3.01
544 3895 8.602424 TCCCTCAGTCTTGAAATAAATGTCTTA 58.398 33.333 0.00 0.00 31.69 2.10
545 3896 9.231297 CCCTCAGTCTTGAAATAAATGTCTTAA 57.769 33.333 0.00 0.00 31.69 1.85
603 3954 8.528044 AAGTTAAGACACTTATTTTTGGGACA 57.472 30.769 0.00 0.00 35.10 4.02
604 3955 8.166422 AGTTAAGACACTTATTTTTGGGACAG 57.834 34.615 0.00 0.00 42.39 3.51
605 3956 7.996644 AGTTAAGACACTTATTTTTGGGACAGA 59.003 33.333 0.00 0.00 42.39 3.41
607 3958 5.941788 AGACACTTATTTTTGGGACAGAGT 58.058 37.500 0.00 0.00 42.39 3.24
608 3959 5.765182 AGACACTTATTTTTGGGACAGAGTG 59.235 40.000 0.00 0.00 42.39 3.51
628 5179 7.984050 CAGAGTGATACATCATACCCCATATTC 59.016 40.741 0.00 0.00 39.30 1.75
707 5258 1.260544 GCCAGCTGGGTTTCAATTCT 58.739 50.000 33.46 0.00 39.65 2.40
708 5259 1.620323 GCCAGCTGGGTTTCAATTCTT 59.380 47.619 33.46 0.00 39.65 2.52
710 5261 3.494924 GCCAGCTGGGTTTCAATTCTTTT 60.495 43.478 33.46 0.00 39.65 2.27
736 5287 7.900782 TTTTTGAAAGATCTAGAGTTACCGG 57.099 36.000 0.00 0.00 0.00 5.28
737 5288 4.650754 TGAAAGATCTAGAGTTACCGGC 57.349 45.455 0.00 0.00 0.00 6.13
738 5289 4.279145 TGAAAGATCTAGAGTTACCGGCT 58.721 43.478 0.00 0.00 0.00 5.52
740 5291 4.922471 AAGATCTAGAGTTACCGGCTTC 57.078 45.455 0.00 0.00 0.00 3.86
741 5292 3.899726 AGATCTAGAGTTACCGGCTTCA 58.100 45.455 0.00 0.00 0.00 3.02
742 5293 4.475345 AGATCTAGAGTTACCGGCTTCAT 58.525 43.478 0.00 0.00 0.00 2.57
743 5294 4.896482 AGATCTAGAGTTACCGGCTTCATT 59.104 41.667 0.00 0.00 0.00 2.57
744 5295 4.386867 TCTAGAGTTACCGGCTTCATTG 57.613 45.455 0.00 0.00 0.00 2.82
745 5296 4.021229 TCTAGAGTTACCGGCTTCATTGA 58.979 43.478 0.00 0.00 0.00 2.57
746 5297 3.914426 AGAGTTACCGGCTTCATTGAT 57.086 42.857 0.00 0.00 0.00 2.57
747 5298 4.222124 AGAGTTACCGGCTTCATTGATT 57.778 40.909 0.00 0.00 0.00 2.57
748 5299 4.589908 AGAGTTACCGGCTTCATTGATTT 58.410 39.130 0.00 0.00 0.00 2.17
750 5301 5.817816 AGAGTTACCGGCTTCATTGATTTAG 59.182 40.000 0.00 0.00 0.00 1.85
751 5302 4.881850 AGTTACCGGCTTCATTGATTTAGG 59.118 41.667 0.00 0.00 0.00 2.69
753 5304 3.545703 ACCGGCTTCATTGATTTAGGAG 58.454 45.455 0.00 0.00 0.00 3.69
754 5305 3.199946 ACCGGCTTCATTGATTTAGGAGA 59.800 43.478 0.00 0.00 0.00 3.71
755 5306 4.199310 CCGGCTTCATTGATTTAGGAGAA 58.801 43.478 0.00 0.00 0.00 2.87
758 5309 5.586339 GGCTTCATTGATTTAGGAGAAAGC 58.414 41.667 0.00 0.00 0.00 3.51
760 5311 6.264088 GCTTCATTGATTTAGGAGAAAGCAG 58.736 40.000 0.00 0.00 0.00 4.24
762 5313 6.992063 TCATTGATTTAGGAGAAAGCAGAC 57.008 37.500 0.00 0.00 0.00 3.51
763 5314 6.475504 TCATTGATTTAGGAGAAAGCAGACA 58.524 36.000 0.00 0.00 0.00 3.41
764 5315 6.596888 TCATTGATTTAGGAGAAAGCAGACAG 59.403 38.462 0.00 0.00 0.00 3.51
765 5316 5.745312 TGATTTAGGAGAAAGCAGACAGA 57.255 39.130 0.00 0.00 0.00 3.41
766 5317 6.114187 TGATTTAGGAGAAAGCAGACAGAA 57.886 37.500 0.00 0.00 0.00 3.02
767 5318 6.533730 TGATTTAGGAGAAAGCAGACAGAAA 58.466 36.000 0.00 0.00 0.00 2.52
768 5319 6.998074 TGATTTAGGAGAAAGCAGACAGAAAA 59.002 34.615 0.00 0.00 0.00 2.29
790 5341 7.537596 AAAAACATGGGTGATCAAGTAATCA 57.462 32.000 0.00 0.00 33.30 2.57
792 5343 6.515272 AACATGGGTGATCAAGTAATCAAC 57.485 37.500 0.00 0.00 41.71 3.18
820 5481 2.224843 ACTTGAACCTGATGCACATGGA 60.225 45.455 7.57 0.00 0.00 3.41
829 5490 3.870274 TGATGCACATGGAGAAAGAGAG 58.130 45.455 0.00 0.00 0.00 3.20
882 5595 5.471116 TCCTAGTATGAAACATGATGCATGC 59.529 40.000 11.82 11.82 44.80 4.06
883 5596 5.239963 CCTAGTATGAAACATGATGCATGCA 59.760 40.000 25.04 25.04 44.80 3.96
884 5597 5.784578 AGTATGAAACATGATGCATGCAT 57.215 34.783 32.66 32.66 44.80 3.96
885 5598 5.528870 AGTATGAAACATGATGCATGCATG 58.471 37.500 36.73 25.85 44.80 4.06
910 5623 2.354259 CCTGTGATTCAGACTGAAGGC 58.646 52.381 21.78 16.33 46.27 4.35
947 5660 4.072088 CTTTCGCACCGCACCGAC 62.072 66.667 0.00 0.00 32.60 4.79
975 5688 1.437986 GATTCCGTCCTCCACTCCG 59.562 63.158 0.00 0.00 0.00 4.63
1026 5739 1.823169 TTGCGGTCGTTCCCTAGCTT 61.823 55.000 0.00 0.00 0.00 3.74
1027 5740 0.966875 TGCGGTCGTTCCCTAGCTTA 60.967 55.000 0.00 0.00 0.00 3.09
1028 5741 0.248949 GCGGTCGTTCCCTAGCTTAG 60.249 60.000 0.00 0.00 0.00 2.18
1029 5742 0.248949 CGGTCGTTCCCTAGCTTAGC 60.249 60.000 0.00 0.00 0.00 3.09
1031 5744 1.206371 GGTCGTTCCCTAGCTTAGCAA 59.794 52.381 7.07 0.00 0.00 3.91
1032 5745 2.541556 GTCGTTCCCTAGCTTAGCAAG 58.458 52.381 7.07 0.00 0.00 4.01
1148 5867 0.940519 TCGACGCCAACAACGTTAGG 60.941 55.000 0.00 4.78 45.24 2.69
1329 6053 1.736586 CGCCCTTCTCTGCGTCTAT 59.263 57.895 0.00 0.00 45.43 1.98
1332 6056 0.461548 CCCTTCTCTGCGTCTATGCA 59.538 55.000 0.00 0.00 43.95 3.96
1540 6273 0.828022 GTACGACCCCATGATGGACA 59.172 55.000 14.26 0.00 40.96 4.02
1541 6274 1.119684 TACGACCCCATGATGGACAG 58.880 55.000 14.26 3.77 40.96 3.51
1724 6460 1.459730 CTCCTACCTGGGGGCCTAC 60.460 68.421 0.84 0.00 36.20 3.18
1967 6703 6.591935 TCAAACTATTGGATGTAGATGGGTC 58.408 40.000 0.00 0.00 37.15 4.46
1988 6724 4.586841 GTCCAAGATATCAGTCTGGCTACT 59.413 45.833 5.32 0.00 0.00 2.57
1999 6735 3.268856 AGTCTGGCTACTACTCCCTACAA 59.731 47.826 0.00 0.00 0.00 2.41
2152 6898 1.608717 GAGGAGTGGCGACATGGTCT 61.609 60.000 0.00 0.00 46.14 3.85
2179 6925 0.394565 GGCACGATATGAGGAAGGCT 59.605 55.000 0.00 0.00 0.00 4.58
2180 6926 1.606737 GGCACGATATGAGGAAGGCTC 60.607 57.143 0.00 0.00 0.00 4.70
2182 6928 1.001406 CACGATATGAGGAAGGCTCCC 59.999 57.143 0.00 0.00 43.64 4.30
2184 6930 1.274728 CGATATGAGGAAGGCTCCCTG 59.725 57.143 0.00 0.00 43.64 4.45
2271 7017 5.597182 TGACCTACTATCTCGCCTACAAAAT 59.403 40.000 0.00 0.00 0.00 1.82
2460 7217 9.825972 AAAGAGTAAATTGATACAACATGAACG 57.174 29.630 0.00 0.00 0.00 3.95
2569 8335 1.303806 TCGGAGTCATCGTGGGTGA 60.304 57.895 0.00 0.00 0.00 4.02
2585 8351 0.648441 GTGACGTTCGACAGCAAACA 59.352 50.000 0.00 0.00 0.00 2.83
2588 8354 0.802994 ACGTTCGACAGCAAACACGA 60.803 50.000 8.81 0.00 0.00 4.35
2744 8510 3.396260 TTTCGGTGGGAGTTTCTACAG 57.604 47.619 0.00 0.00 0.00 2.74
2777 8543 0.036306 AATTGTGGACGACCCCAGAC 59.964 55.000 0.34 0.00 36.78 3.51
2794 8560 3.068590 CCAGACCAGCTTGTTTTGATTGT 59.931 43.478 0.00 0.00 0.00 2.71
2804 8570 2.550606 TGTTTTGATTGTGTCTACCCGC 59.449 45.455 0.00 0.00 0.00 6.13
2805 8571 1.434555 TTTGATTGTGTCTACCCGCG 58.565 50.000 0.00 0.00 0.00 6.46
2806 8572 0.319083 TTGATTGTGTCTACCCGCGT 59.681 50.000 4.92 0.00 0.00 6.01
2807 8573 0.389296 TGATTGTGTCTACCCGCGTG 60.389 55.000 4.92 0.00 0.00 5.34
2808 8574 0.108992 GATTGTGTCTACCCGCGTGA 60.109 55.000 4.92 0.00 0.00 4.35
2809 8575 0.535335 ATTGTGTCTACCCGCGTGAT 59.465 50.000 4.92 0.00 0.00 3.06
2871 8637 6.757897 TTATTGGTCTTGTTTGCATAGAGG 57.242 37.500 0.00 0.00 0.00 3.69
2884 8650 1.123928 ATAGAGGAAGAAGGCACCGG 58.876 55.000 0.00 0.00 0.00 5.28
2956 8722 0.843343 TGGGGTAGAGGGTGGAAACC 60.843 60.000 0.00 0.00 0.00 3.27
2961 8727 1.345415 GTAGAGGGTGGAAACCGACAA 59.655 52.381 0.00 0.00 0.00 3.18
2965 8731 0.519961 GGGTGGAAACCGACAATTCG 59.480 55.000 0.00 0.00 45.44 3.34
2974 8740 4.204891 GACAATTCGGCGCGTCGG 62.205 66.667 34.24 19.54 0.00 4.79
2992 8758 0.657368 GGCACGAGCGAAAAACTGTG 60.657 55.000 0.00 0.00 43.41 3.66
3017 8783 4.051922 GACCCATTCAGTGCTAGAATACG 58.948 47.826 0.00 0.00 34.14 3.06
3026 8792 4.049186 AGTGCTAGAATACGTATTTGGCG 58.951 43.478 21.18 11.51 0.00 5.69
3027 8793 3.800506 GTGCTAGAATACGTATTTGGCGT 59.199 43.478 21.18 7.55 45.11 5.68
3028 8794 4.046462 TGCTAGAATACGTATTTGGCGTC 58.954 43.478 21.18 8.26 42.85 5.19
3029 8795 4.202080 TGCTAGAATACGTATTTGGCGTCT 60.202 41.667 21.18 14.72 42.85 4.18
3030 8796 4.148348 GCTAGAATACGTATTTGGCGTCTG 59.852 45.833 21.18 9.12 42.85 3.51
3031 8797 2.864343 AGAATACGTATTTGGCGTCTGC 59.136 45.455 21.18 6.07 42.85 4.26
3032 8798 2.303163 ATACGTATTTGGCGTCTGCA 57.697 45.000 1.14 0.00 45.35 4.41
3033 8799 2.081725 TACGTATTTGGCGTCTGCAA 57.918 45.000 0.00 0.00 45.35 4.08
3034 8800 0.515564 ACGTATTTGGCGTCTGCAAC 59.484 50.000 0.00 0.00 45.35 4.17
3035 8801 0.515127 CGTATTTGGCGTCTGCAACA 59.485 50.000 0.00 0.00 45.35 3.33
3036 8802 1.724654 CGTATTTGGCGTCTGCAACAC 60.725 52.381 0.00 0.00 45.35 3.32
3037 8803 0.878416 TATTTGGCGTCTGCAACACC 59.122 50.000 0.00 0.00 45.35 4.16
3038 8804 0.823356 ATTTGGCGTCTGCAACACCT 60.823 50.000 7.34 0.00 45.35 4.00
3039 8805 1.723608 TTTGGCGTCTGCAACACCTG 61.724 55.000 7.34 0.00 45.35 4.00
3040 8806 2.280797 GGCGTCTGCAACACCTGA 60.281 61.111 0.00 0.00 45.35 3.86
3041 8807 1.891919 GGCGTCTGCAACACCTGAA 60.892 57.895 0.00 0.00 45.35 3.02
3042 8808 1.237285 GGCGTCTGCAACACCTGAAT 61.237 55.000 0.00 0.00 45.35 2.57
3043 8809 0.110056 GCGTCTGCAACACCTGAATG 60.110 55.000 0.00 0.00 42.15 2.67
3044 8810 0.110056 CGTCTGCAACACCTGAATGC 60.110 55.000 0.00 0.00 40.45 3.56
3045 8811 0.242017 GTCTGCAACACCTGAATGCC 59.758 55.000 0.00 0.00 39.31 4.40
3046 8812 0.178995 TCTGCAACACCTGAATGCCA 60.179 50.000 0.00 0.00 39.31 4.92
3047 8813 0.242825 CTGCAACACCTGAATGCCAG 59.757 55.000 0.00 0.00 42.55 4.85
3048 8814 0.467844 TGCAACACCTGAATGCCAGT 60.468 50.000 0.00 0.00 41.33 4.00
3049 8815 0.038892 GCAACACCTGAATGCCAGTG 60.039 55.000 0.00 0.00 41.33 3.66
3050 8816 0.038892 CAACACCTGAATGCCAGTGC 60.039 55.000 0.00 0.00 41.33 4.40
3051 8817 0.178981 AACACCTGAATGCCAGTGCT 60.179 50.000 0.00 0.00 41.33 4.40
3052 8818 0.178981 ACACCTGAATGCCAGTGCTT 60.179 50.000 0.00 0.00 41.33 3.91
3053 8819 0.242825 CACCTGAATGCCAGTGCTTG 59.757 55.000 0.00 0.00 41.33 4.01
3063 8829 3.091318 CAGTGCTTGGATGGCCTAG 57.909 57.895 3.32 0.00 39.64 3.02
3064 8830 0.465097 CAGTGCTTGGATGGCCTAGG 60.465 60.000 3.67 3.67 37.48 3.02
3065 8831 0.916358 AGTGCTTGGATGGCCTAGGT 60.916 55.000 11.31 0.00 37.48 3.08
3066 8832 0.837272 GTGCTTGGATGGCCTAGGTA 59.163 55.000 11.31 0.00 37.48 3.08
3067 8833 1.421646 GTGCTTGGATGGCCTAGGTAT 59.578 52.381 11.31 5.48 37.48 2.73
3068 8834 2.135189 TGCTTGGATGGCCTAGGTATT 58.865 47.619 11.31 0.00 37.48 1.89
3069 8835 2.106511 TGCTTGGATGGCCTAGGTATTC 59.893 50.000 11.31 5.12 37.48 1.75
3070 8836 2.872038 GCTTGGATGGCCTAGGTATTCG 60.872 54.545 11.31 0.00 37.48 3.34
3071 8837 2.097110 TGGATGGCCTAGGTATTCGT 57.903 50.000 11.31 0.00 34.31 3.85
3072 8838 1.968493 TGGATGGCCTAGGTATTCGTC 59.032 52.381 11.31 8.58 34.31 4.20
3073 8839 1.275573 GGATGGCCTAGGTATTCGTCC 59.724 57.143 11.31 13.36 0.00 4.79
3074 8840 0.966920 ATGGCCTAGGTATTCGTCCG 59.033 55.000 11.31 0.00 0.00 4.79
3075 8841 0.396139 TGGCCTAGGTATTCGTCCGT 60.396 55.000 11.31 0.00 0.00 4.69
3076 8842 1.133823 TGGCCTAGGTATTCGTCCGTA 60.134 52.381 11.31 0.00 0.00 4.02
3077 8843 1.538950 GGCCTAGGTATTCGTCCGTAG 59.461 57.143 11.31 0.00 0.00 3.51
3078 8844 2.498167 GCCTAGGTATTCGTCCGTAGA 58.502 52.381 11.31 0.00 0.00 2.59
3079 8845 2.880890 GCCTAGGTATTCGTCCGTAGAA 59.119 50.000 11.31 0.00 0.00 2.10
3080 8846 3.505293 GCCTAGGTATTCGTCCGTAGAAT 59.495 47.826 11.31 3.42 32.48 2.40
3081 8847 4.379290 GCCTAGGTATTCGTCCGTAGAATC 60.379 50.000 11.31 0.00 32.48 2.52
3082 8848 3.892918 AGGTATTCGTCCGTAGAATCG 57.107 47.619 1.39 0.00 32.48 3.34
3083 8849 3.470709 AGGTATTCGTCCGTAGAATCGA 58.529 45.455 0.00 0.00 32.48 3.59
3084 8850 3.879295 AGGTATTCGTCCGTAGAATCGAA 59.121 43.478 0.00 0.00 44.19 3.71
3086 8852 4.850470 GGTATTCGTCCGTAGAATCGAATC 59.150 45.833 13.38 0.00 45.51 2.52
3087 8853 2.657960 TCGTCCGTAGAATCGAATCG 57.342 50.000 0.00 0.00 0.00 3.34
3088 8854 1.043224 CGTCCGTAGAATCGAATCGC 58.957 55.000 0.00 0.00 0.00 4.58
3089 8855 1.043224 GTCCGTAGAATCGAATCGCG 58.957 55.000 0.00 0.00 42.69 5.87
3101 8867 4.957759 TCGAATCGCGATATTGGATAGA 57.042 40.909 24.00 8.47 45.59 1.98
3102 8868 4.909894 TCGAATCGCGATATTGGATAGAG 58.090 43.478 24.00 4.68 45.59 2.43
3103 8869 3.483922 CGAATCGCGATATTGGATAGAGC 59.516 47.826 24.00 0.00 44.57 4.09
3104 8870 2.941453 TCGCGATATTGGATAGAGCC 57.059 50.000 3.71 0.00 0.00 4.70
3105 8871 1.476891 TCGCGATATTGGATAGAGCCC 59.523 52.381 3.71 0.00 0.00 5.19
3106 8872 1.799181 CGCGATATTGGATAGAGCCCG 60.799 57.143 0.00 0.00 0.00 6.13
3107 8873 1.927895 CGATATTGGATAGAGCCCGC 58.072 55.000 0.00 0.00 0.00 6.13
3108 8874 1.471676 CGATATTGGATAGAGCCCGCC 60.472 57.143 0.00 0.00 0.00 6.13
3109 8875 1.555075 GATATTGGATAGAGCCCGCCA 59.445 52.381 0.00 0.00 0.00 5.69
3110 8876 0.976641 TATTGGATAGAGCCCGCCAG 59.023 55.000 0.00 0.00 0.00 4.85
3111 8877 2.403132 ATTGGATAGAGCCCGCCAGC 62.403 60.000 0.00 0.00 0.00 4.85
3112 8878 3.550431 GGATAGAGCCCGCCAGCA 61.550 66.667 0.00 0.00 34.23 4.41
3113 8879 2.280457 GATAGAGCCCGCCAGCAC 60.280 66.667 0.00 0.00 34.23 4.40
3114 8880 4.227134 ATAGAGCCCGCCAGCACG 62.227 66.667 0.00 0.00 34.23 5.34
3121 8887 3.118454 CCGCCAGCACGACGAAAT 61.118 61.111 0.00 0.00 34.06 2.17
3122 8888 2.677003 CCGCCAGCACGACGAAATT 61.677 57.895 0.00 0.00 34.06 1.82
3123 8889 1.509787 CGCCAGCACGACGAAATTG 60.510 57.895 0.00 0.00 34.06 2.32
3124 8890 1.797537 GCCAGCACGACGAAATTGC 60.798 57.895 0.00 0.00 36.45 3.56
3126 8892 0.179215 CCAGCACGACGAAATTGCTC 60.179 55.000 7.63 0.00 44.87 4.26
3127 8893 0.179215 CAGCACGACGAAATTGCTCC 60.179 55.000 7.63 0.00 44.87 4.70
3128 8894 0.320771 AGCACGACGAAATTGCTCCT 60.321 50.000 0.00 0.00 43.14 3.69
3129 8895 0.095417 GCACGACGAAATTGCTCCTC 59.905 55.000 0.00 0.00 33.26 3.71
3130 8896 0.721718 CACGACGAAATTGCTCCTCC 59.278 55.000 0.00 0.00 0.00 4.30
3131 8897 0.391263 ACGACGAAATTGCTCCTCCC 60.391 55.000 0.00 0.00 0.00 4.30
3132 8898 1.090052 CGACGAAATTGCTCCTCCCC 61.090 60.000 0.00 0.00 0.00 4.81
3133 8899 0.748367 GACGAAATTGCTCCTCCCCC 60.748 60.000 0.00 0.00 0.00 5.40
3151 8917 3.469008 CCCCCAAAGTTTTTGTCTTCC 57.531 47.619 1.40 0.00 0.00 3.46
3152 8918 2.769095 CCCCCAAAGTTTTTGTCTTCCA 59.231 45.455 1.40 0.00 0.00 3.53
3153 8919 3.198853 CCCCCAAAGTTTTTGTCTTCCAA 59.801 43.478 1.40 0.00 0.00 3.53
3154 8920 4.323868 CCCCCAAAGTTTTTGTCTTCCAAA 60.324 41.667 1.40 0.00 41.25 3.28
3155 8921 5.436175 CCCCAAAGTTTTTGTCTTCCAAAT 58.564 37.500 1.40 0.00 42.45 2.32
3156 8922 5.296531 CCCCAAAGTTTTTGTCTTCCAAATG 59.703 40.000 1.40 0.00 42.45 2.32
3157 8923 5.879777 CCCAAAGTTTTTGTCTTCCAAATGT 59.120 36.000 1.40 0.00 42.45 2.71
3158 8924 6.183360 CCCAAAGTTTTTGTCTTCCAAATGTG 60.183 38.462 1.40 0.00 42.45 3.21
3159 8925 6.250089 CAAAGTTTTTGTCTTCCAAATGTGC 58.750 36.000 0.00 0.00 42.45 4.57
3160 8926 4.111916 AGTTTTTGTCTTCCAAATGTGCG 58.888 39.130 0.00 0.00 42.45 5.34
3161 8927 2.132740 TTTGTCTTCCAAATGTGCGC 57.867 45.000 0.00 0.00 38.12 6.09
3162 8928 0.040514 TTGTCTTCCAAATGTGCGCG 60.041 50.000 0.00 0.00 0.00 6.86
3163 8929 1.154225 GTCTTCCAAATGTGCGCGG 60.154 57.895 8.83 0.00 0.00 6.46
3164 8930 2.179018 CTTCCAAATGTGCGCGGG 59.821 61.111 8.83 0.00 0.00 6.13
3165 8931 3.969642 CTTCCAAATGTGCGCGGGC 62.970 63.158 18.81 18.81 40.52 6.13
3176 8942 3.347405 CGCGGGCACGTTTGGTTA 61.347 61.111 11.45 0.00 43.45 2.85
3177 8943 2.682876 CGCGGGCACGTTTGGTTAT 61.683 57.895 11.45 0.00 43.45 1.89
3178 8944 1.154112 GCGGGCACGTTTGGTTATG 60.154 57.895 11.45 0.00 43.45 1.90
3179 8945 1.858372 GCGGGCACGTTTGGTTATGT 61.858 55.000 11.45 0.00 43.45 2.29
3180 8946 0.594110 CGGGCACGTTTGGTTATGTT 59.406 50.000 0.00 0.00 34.81 2.71
3181 8947 1.400500 CGGGCACGTTTGGTTATGTTC 60.400 52.381 0.00 0.00 34.81 3.18
3182 8948 1.400500 GGGCACGTTTGGTTATGTTCG 60.400 52.381 0.00 0.00 0.00 3.95
3183 8949 1.532007 GGCACGTTTGGTTATGTTCGA 59.468 47.619 0.00 0.00 0.00 3.71
3184 8950 2.031857 GGCACGTTTGGTTATGTTCGAA 60.032 45.455 0.00 0.00 0.00 3.71
3185 8951 2.968655 GCACGTTTGGTTATGTTCGAAC 59.031 45.455 21.42 21.42 0.00 3.95
3187 8953 3.508648 CGTTTGGTTATGTTCGAACGT 57.491 42.857 25.19 25.19 42.51 3.99
3188 8954 3.212103 CGTTTGGTTATGTTCGAACGTG 58.788 45.455 28.92 9.16 42.51 4.49
3189 8955 3.060406 CGTTTGGTTATGTTCGAACGTGA 60.060 43.478 28.92 20.33 42.51 4.35
3190 8956 4.206088 GTTTGGTTATGTTCGAACGTGAC 58.794 43.478 28.13 28.13 34.68 3.67
3194 8960 3.986128 GTTATGTTCGAACGTGACCATG 58.014 45.455 28.92 0.00 30.67 3.66
3195 8961 1.438651 ATGTTCGAACGTGACCATGG 58.561 50.000 21.83 11.19 0.00 3.66
3196 8962 0.389757 TGTTCGAACGTGACCATGGA 59.610 50.000 21.47 0.00 0.00 3.41
3197 8963 0.788391 GTTCGAACGTGACCATGGAC 59.212 55.000 21.47 13.94 0.00 4.02
3198 8964 0.389757 TTCGAACGTGACCATGGACA 59.610 50.000 21.47 16.99 0.00 4.02
3199 8965 0.038618 TCGAACGTGACCATGGACAG 60.039 55.000 21.47 14.41 0.00 3.51
3200 8966 0.319555 CGAACGTGACCATGGACAGT 60.320 55.000 21.47 15.04 0.00 3.55
3201 8967 1.148310 GAACGTGACCATGGACAGTG 58.852 55.000 21.47 16.01 0.00 3.66
3202 8968 0.250295 AACGTGACCATGGACAGTGG 60.250 55.000 21.47 12.93 42.55 4.00
3206 8972 3.068881 ACCATGGACAGTGGTCGG 58.931 61.111 21.47 0.00 46.79 4.79
3207 8973 2.268920 CCATGGACAGTGGTCGGG 59.731 66.667 5.56 0.00 45.28 5.14
3208 8974 2.436646 CATGGACAGTGGTCGGGC 60.437 66.667 0.00 0.00 45.28 6.13
3209 8975 4.082523 ATGGACAGTGGTCGGGCG 62.083 66.667 0.00 0.00 45.28 6.13
3212 8978 4.760047 GACAGTGGTCGGGCGCAT 62.760 66.667 10.83 0.00 33.68 4.73
3213 8979 3.365291 GACAGTGGTCGGGCGCATA 62.365 63.158 10.83 0.00 33.68 3.14
3214 8980 2.125310 CAGTGGTCGGGCGCATAA 60.125 61.111 10.83 0.00 0.00 1.90
3215 8981 1.523711 CAGTGGTCGGGCGCATAAT 60.524 57.895 10.83 0.00 0.00 1.28
3216 8982 1.227556 AGTGGTCGGGCGCATAATC 60.228 57.895 10.83 0.00 0.00 1.75
3217 8983 1.522806 GTGGTCGGGCGCATAATCA 60.523 57.895 10.83 0.00 0.00 2.57
3218 8984 0.884704 GTGGTCGGGCGCATAATCAT 60.885 55.000 10.83 0.00 0.00 2.45
3219 8985 0.602638 TGGTCGGGCGCATAATCATC 60.603 55.000 10.83 0.00 0.00 2.92
3220 8986 1.626654 GGTCGGGCGCATAATCATCG 61.627 60.000 10.83 0.00 0.00 3.84
3221 8987 0.666274 GTCGGGCGCATAATCATCGA 60.666 55.000 10.83 2.06 0.00 3.59
3222 8988 0.032815 TCGGGCGCATAATCATCGAA 59.967 50.000 10.83 0.00 0.00 3.71
3223 8989 0.865111 CGGGCGCATAATCATCGAAA 59.135 50.000 10.83 0.00 0.00 3.46
3224 8990 1.398451 CGGGCGCATAATCATCGAAAC 60.398 52.381 10.83 0.00 0.00 2.78
3225 8991 1.601903 GGGCGCATAATCATCGAAACA 59.398 47.619 10.83 0.00 0.00 2.83
3226 8992 2.226437 GGGCGCATAATCATCGAAACAT 59.774 45.455 10.83 0.00 0.00 2.71
3227 8993 3.435327 GGGCGCATAATCATCGAAACATA 59.565 43.478 10.83 0.00 0.00 2.29
3228 8994 4.436050 GGGCGCATAATCATCGAAACATAG 60.436 45.833 10.83 0.00 0.00 2.23
3229 8995 4.152402 GGCGCATAATCATCGAAACATAGT 59.848 41.667 10.83 0.00 0.00 2.12
3230 8996 5.308927 GCGCATAATCATCGAAACATAGTC 58.691 41.667 0.30 0.00 0.00 2.59
3231 8997 5.107491 GCGCATAATCATCGAAACATAGTCA 60.107 40.000 0.30 0.00 0.00 3.41
3232 8998 6.401474 GCGCATAATCATCGAAACATAGTCAT 60.401 38.462 0.30 0.00 0.00 3.06
3233 8999 7.169455 CGCATAATCATCGAAACATAGTCATC 58.831 38.462 0.00 0.00 0.00 2.92
3234 9000 7.148755 CGCATAATCATCGAAACATAGTCATCA 60.149 37.037 0.00 0.00 0.00 3.07
3235 9001 8.498358 GCATAATCATCGAAACATAGTCATCAA 58.502 33.333 0.00 0.00 0.00 2.57
3239 9005 7.848223 TCATCGAAACATAGTCATCAAATGT 57.152 32.000 0.00 0.00 35.40 2.71
3240 9006 7.909267 TCATCGAAACATAGTCATCAAATGTC 58.091 34.615 0.00 0.00 32.80 3.06
3241 9007 7.548780 TCATCGAAACATAGTCATCAAATGTCA 59.451 33.333 0.00 0.00 32.80 3.58
3242 9008 7.848223 TCGAAACATAGTCATCAAATGTCAT 57.152 32.000 0.00 0.00 32.80 3.06
3243 9009 8.267620 TCGAAACATAGTCATCAAATGTCATT 57.732 30.769 0.00 0.00 32.80 2.57
3244 9010 8.729756 TCGAAACATAGTCATCAAATGTCATTT 58.270 29.630 4.91 4.91 32.80 2.32
3245 9011 9.003112 CGAAACATAGTCATCAAATGTCATTTC 57.997 33.333 7.87 0.00 32.80 2.17
3246 9012 9.294030 GAAACATAGTCATCAAATGTCATTTCC 57.706 33.333 7.87 0.00 32.80 3.13
3247 9013 8.585471 AACATAGTCATCAAATGTCATTTCCT 57.415 30.769 7.87 2.95 32.80 3.36
3248 9014 8.585471 ACATAGTCATCAAATGTCATTTCCTT 57.415 30.769 7.87 0.00 0.00 3.36
3249 9015 9.685276 ACATAGTCATCAAATGTCATTTCCTTA 57.315 29.630 7.87 0.00 0.00 2.69
3306 9072 9.807649 ATCAAAGATAAATAGCACAATTCAACC 57.192 29.630 0.00 0.00 0.00 3.77
3307 9073 8.250332 TCAAAGATAAATAGCACAATTCAACCC 58.750 33.333 0.00 0.00 0.00 4.11
3308 9074 7.716799 AAGATAAATAGCACAATTCAACCCA 57.283 32.000 0.00 0.00 0.00 4.51
3309 9075 7.716799 AGATAAATAGCACAATTCAACCCAA 57.283 32.000 0.00 0.00 0.00 4.12
3310 9076 8.310122 AGATAAATAGCACAATTCAACCCAAT 57.690 30.769 0.00 0.00 0.00 3.16
3311 9077 8.761689 AGATAAATAGCACAATTCAACCCAATT 58.238 29.630 0.00 0.00 0.00 2.32
3312 9078 8.947055 ATAAATAGCACAATTCAACCCAATTC 57.053 30.769 0.00 0.00 0.00 2.17
3313 9079 3.683365 AGCACAATTCAACCCAATTCC 57.317 42.857 0.00 0.00 0.00 3.01
3314 9080 2.302733 AGCACAATTCAACCCAATTCCC 59.697 45.455 0.00 0.00 0.00 3.97
3315 9081 2.302733 GCACAATTCAACCCAATTCCCT 59.697 45.455 0.00 0.00 0.00 4.20
3316 9082 3.865684 GCACAATTCAACCCAATTCCCTG 60.866 47.826 0.00 0.00 0.00 4.45
3317 9083 2.302733 ACAATTCAACCCAATTCCCTGC 59.697 45.455 0.00 0.00 0.00 4.85
3318 9084 2.302445 CAATTCAACCCAATTCCCTGCA 59.698 45.455 0.00 0.00 0.00 4.41
3319 9085 1.337118 TTCAACCCAATTCCCTGCAC 58.663 50.000 0.00 0.00 0.00 4.57
3320 9086 0.482446 TCAACCCAATTCCCTGCACT 59.518 50.000 0.00 0.00 0.00 4.40
3321 9087 1.707989 TCAACCCAATTCCCTGCACTA 59.292 47.619 0.00 0.00 0.00 2.74
3322 9088 2.311542 TCAACCCAATTCCCTGCACTAT 59.688 45.455 0.00 0.00 0.00 2.12
3323 9089 3.099141 CAACCCAATTCCCTGCACTATT 58.901 45.455 0.00 0.00 0.00 1.73
3324 9090 3.473113 ACCCAATTCCCTGCACTATTT 57.527 42.857 0.00 0.00 0.00 1.40
3325 9091 4.601406 ACCCAATTCCCTGCACTATTTA 57.399 40.909 0.00 0.00 0.00 1.40
3326 9092 4.536765 ACCCAATTCCCTGCACTATTTAG 58.463 43.478 0.00 0.00 0.00 1.85
3327 9093 3.891366 CCCAATTCCCTGCACTATTTAGG 59.109 47.826 0.00 0.00 0.00 2.69
3331 9097 1.518367 CCCTGCACTATTTAGGGGGA 58.482 55.000 0.00 0.00 46.05 4.81
3332 9098 1.850345 CCCTGCACTATTTAGGGGGAA 59.150 52.381 0.00 0.00 46.05 3.97
3333 9099 2.243736 CCCTGCACTATTTAGGGGGAAA 59.756 50.000 0.00 0.00 46.05 3.13
3334 9100 3.555966 CCTGCACTATTTAGGGGGAAAG 58.444 50.000 0.00 0.00 0.00 2.62
3335 9101 3.555966 CTGCACTATTTAGGGGGAAAGG 58.444 50.000 0.00 0.00 0.00 3.11
3336 9102 3.194620 TGCACTATTTAGGGGGAAAGGA 58.805 45.455 0.00 0.00 0.00 3.36
3337 9103 3.791545 TGCACTATTTAGGGGGAAAGGAT 59.208 43.478 0.00 0.00 0.00 3.24
3338 9104 4.141251 TGCACTATTTAGGGGGAAAGGATC 60.141 45.833 0.00 0.00 0.00 3.36
3346 9112 4.520063 GGAAAGGATCCCTCCCCA 57.480 61.111 16.69 0.00 43.21 4.96
3347 9113 2.723305 GGAAAGGATCCCTCCCCAA 58.277 57.895 16.69 0.00 43.21 4.12
3348 9114 1.235756 GGAAAGGATCCCTCCCCAAT 58.764 55.000 16.69 0.00 43.21 3.16
3349 9115 2.428901 GGAAAGGATCCCTCCCCAATA 58.571 52.381 16.69 0.00 43.21 1.90
3350 9116 2.996742 GGAAAGGATCCCTCCCCAATAT 59.003 50.000 16.69 0.00 43.21 1.28
3351 9117 3.245407 GGAAAGGATCCCTCCCCAATATG 60.245 52.174 16.69 0.00 43.21 1.78
3352 9118 3.383780 AAGGATCCCTCCCCAATATGA 57.616 47.619 8.55 0.00 43.21 2.15
3353 9119 2.926601 AGGATCCCTCCCCAATATGAG 58.073 52.381 8.55 0.00 43.21 2.90
3354 9120 1.283321 GGATCCCTCCCCAATATGAGC 59.717 57.143 0.00 0.00 35.28 4.26
3355 9121 1.283321 GATCCCTCCCCAATATGAGCC 59.717 57.143 0.00 0.00 0.00 4.70
3356 9122 0.772124 TCCCTCCCCAATATGAGCCC 60.772 60.000 0.00 0.00 0.00 5.19
3357 9123 0.773700 CCCTCCCCAATATGAGCCCT 60.774 60.000 0.00 0.00 0.00 5.19
3358 9124 1.486943 CCCTCCCCAATATGAGCCCTA 60.487 57.143 0.00 0.00 0.00 3.53
3359 9125 2.348472 CCTCCCCAATATGAGCCCTAA 58.652 52.381 0.00 0.00 0.00 2.69
3360 9126 2.922283 CCTCCCCAATATGAGCCCTAAT 59.078 50.000 0.00 0.00 0.00 1.73
3361 9127 3.308688 CCTCCCCAATATGAGCCCTAATG 60.309 52.174 0.00 0.00 0.00 1.90
3362 9128 2.649312 TCCCCAATATGAGCCCTAATGG 59.351 50.000 0.00 0.00 37.09 3.16
3380 9146 4.152625 GCACCACGTCAGCGCATC 62.153 66.667 11.47 0.00 42.83 3.91
3381 9147 3.842126 CACCACGTCAGCGCATCG 61.842 66.667 11.47 13.71 42.83 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 8.893563 TTATTTATTTTGGTGAGGAATCAGGT 57.106 30.769 0.00 0.00 0.00 4.00
69 70 2.166870 ACGTATGTTGAGTAATCCGCCA 59.833 45.455 0.00 0.00 0.00 5.69
179 180 3.119566 CCGACGAGTAGCTAGGACTTTTT 60.120 47.826 0.00 0.00 0.00 1.94
200 202 4.895961 ACCAGCTTCTGTCTAGTTTAACC 58.104 43.478 0.00 0.00 0.00 2.85
281 283 8.346300 TGATTAAGCTTTGAAACGTGTTAATCA 58.654 29.630 3.20 6.53 40.49 2.57
282 284 8.722342 TGATTAAGCTTTGAAACGTGTTAATC 57.278 30.769 3.20 3.80 36.55 1.75
283 285 9.128107 CATGATTAAGCTTTGAAACGTGTTAAT 57.872 29.630 3.20 0.00 0.00 1.40
299 306 1.230324 GGAGCGGTCCATGATTAAGC 58.770 55.000 28.27 0.00 43.31 3.09
353 363 1.648720 CGCGCGATTTGGGAATCAT 59.351 52.632 28.94 0.00 41.43 2.45
452 2073 7.705214 AGTACTACTTCGTAATTAGCTGAAGG 58.295 38.462 18.80 9.77 41.58 3.46
597 3948 4.588951 GGTATGATGTATCACTCTGTCCCA 59.411 45.833 0.00 0.00 40.03 4.37
600 3951 4.588951 TGGGGTATGATGTATCACTCTGTC 59.411 45.833 0.00 0.00 40.03 3.51
601 3952 4.556697 TGGGGTATGATGTATCACTCTGT 58.443 43.478 0.00 0.00 40.03 3.41
602 3953 5.752036 ATGGGGTATGATGTATCACTCTG 57.248 43.478 0.00 0.00 40.03 3.35
603 3954 7.126421 GGAATATGGGGTATGATGTATCACTCT 59.874 40.741 0.00 0.00 40.03 3.24
604 3955 7.275920 GGAATATGGGGTATGATGTATCACTC 58.724 42.308 0.00 0.00 40.03 3.51
605 3956 6.158695 GGGAATATGGGGTATGATGTATCACT 59.841 42.308 0.00 0.00 40.03 3.41
607 3958 6.035315 TGGGAATATGGGGTATGATGTATCA 58.965 40.000 0.00 0.00 41.70 2.15
608 3959 6.575244 TGGGAATATGGGGTATGATGTATC 57.425 41.667 0.00 0.00 0.00 2.24
628 5179 0.242825 CATGAAGTTGCACAGCTGGG 59.757 55.000 19.93 16.72 0.00 4.45
662 5213 6.260050 CCGCTTGTAAGTTGTATGTATCCAAT 59.740 38.462 0.00 0.00 0.00 3.16
712 5263 6.370718 GCCGGTAACTCTAGATCTTTCAAAAA 59.629 38.462 1.90 0.00 0.00 1.94
714 5265 5.187186 AGCCGGTAACTCTAGATCTTTCAAA 59.813 40.000 1.90 0.00 0.00 2.69
716 5267 4.279145 AGCCGGTAACTCTAGATCTTTCA 58.721 43.478 1.90 0.00 0.00 2.69
717 5268 4.922471 AGCCGGTAACTCTAGATCTTTC 57.078 45.455 1.90 0.00 0.00 2.62
719 5270 4.279145 TGAAGCCGGTAACTCTAGATCTT 58.721 43.478 1.90 0.00 0.00 2.40
720 5271 3.899726 TGAAGCCGGTAACTCTAGATCT 58.100 45.455 1.90 0.00 0.00 2.75
721 5272 4.857509 ATGAAGCCGGTAACTCTAGATC 57.142 45.455 1.90 0.00 0.00 2.75
722 5273 4.649674 TCAATGAAGCCGGTAACTCTAGAT 59.350 41.667 1.90 0.00 0.00 1.98
723 5274 4.021229 TCAATGAAGCCGGTAACTCTAGA 58.979 43.478 1.90 0.00 0.00 2.43
724 5275 4.386867 TCAATGAAGCCGGTAACTCTAG 57.613 45.455 1.90 0.00 0.00 2.43
725 5276 5.353394 AATCAATGAAGCCGGTAACTCTA 57.647 39.130 1.90 0.00 0.00 2.43
726 5277 3.914426 ATCAATGAAGCCGGTAACTCT 57.086 42.857 1.90 0.00 0.00 3.24
728 5279 4.881850 CCTAAATCAATGAAGCCGGTAACT 59.118 41.667 1.90 0.00 0.00 2.24
730 5281 5.104693 TCTCCTAAATCAATGAAGCCGGTAA 60.105 40.000 1.90 0.00 0.00 2.85
733 5284 3.808728 TCTCCTAAATCAATGAAGCCGG 58.191 45.455 0.00 0.00 0.00 6.13
734 5285 5.731686 GCTTTCTCCTAAATCAATGAAGCCG 60.732 44.000 0.00 0.00 0.00 5.52
735 5286 5.126061 TGCTTTCTCCTAAATCAATGAAGCC 59.874 40.000 0.00 0.00 0.00 4.35
736 5287 6.094603 TCTGCTTTCTCCTAAATCAATGAAGC 59.905 38.462 0.00 0.00 0.00 3.86
737 5288 7.120285 TGTCTGCTTTCTCCTAAATCAATGAAG 59.880 37.037 0.00 0.00 0.00 3.02
738 5289 6.942005 TGTCTGCTTTCTCCTAAATCAATGAA 59.058 34.615 0.00 0.00 0.00 2.57
740 5291 6.596888 TCTGTCTGCTTTCTCCTAAATCAATG 59.403 38.462 0.00 0.00 0.00 2.82
741 5292 6.715280 TCTGTCTGCTTTCTCCTAAATCAAT 58.285 36.000 0.00 0.00 0.00 2.57
742 5293 6.114187 TCTGTCTGCTTTCTCCTAAATCAA 57.886 37.500 0.00 0.00 0.00 2.57
743 5294 5.745312 TCTGTCTGCTTTCTCCTAAATCA 57.255 39.130 0.00 0.00 0.00 2.57
744 5295 7.440523 TTTTCTGTCTGCTTTCTCCTAAATC 57.559 36.000 0.00 0.00 0.00 2.17
745 5296 7.823745 TTTTTCTGTCTGCTTTCTCCTAAAT 57.176 32.000 0.00 0.00 0.00 1.40
766 5317 7.537596 TGATTACTTGATCACCCATGTTTTT 57.462 32.000 0.00 0.00 31.35 1.94
767 5318 7.233348 AGTTGATTACTTGATCACCCATGTTTT 59.767 33.333 0.00 0.00 35.86 2.43
768 5319 6.721208 AGTTGATTACTTGATCACCCATGTTT 59.279 34.615 0.00 0.00 35.86 2.83
770 5321 5.819991 AGTTGATTACTTGATCACCCATGT 58.180 37.500 0.00 0.00 35.86 3.21
771 5322 6.764308 AAGTTGATTACTTGATCACCCATG 57.236 37.500 0.00 0.00 45.33 3.66
772 5323 7.402054 TGTAAGTTGATTACTTGATCACCCAT 58.598 34.615 0.00 0.00 46.46 4.00
775 5326 8.784043 AGTTTGTAAGTTGATTACTTGATCACC 58.216 33.333 0.00 0.00 46.46 4.02
780 5331 9.997482 GTTCAAGTTTGTAAGTTGATTACTTGA 57.003 29.630 15.49 15.49 46.84 3.02
781 5332 9.233232 GGTTCAAGTTTGTAAGTTGATTACTTG 57.767 33.333 9.71 0.00 46.84 3.16
783 5334 8.621286 CAGGTTCAAGTTTGTAAGTTGATTACT 58.379 33.333 9.71 6.63 46.84 2.24
784 5335 8.617809 TCAGGTTCAAGTTTGTAAGTTGATTAC 58.382 33.333 9.71 6.81 46.84 1.89
785 5336 8.740123 TCAGGTTCAAGTTTGTAAGTTGATTA 57.260 30.769 9.71 0.00 46.84 1.75
786 5337 7.639113 TCAGGTTCAAGTTTGTAAGTTGATT 57.361 32.000 9.71 0.00 46.84 2.57
787 5338 7.651808 CATCAGGTTCAAGTTTGTAAGTTGAT 58.348 34.615 9.71 0.00 46.84 2.57
790 5341 5.359576 TGCATCAGGTTCAAGTTTGTAAGTT 59.640 36.000 0.00 0.00 0.00 2.66
792 5343 5.215160 GTGCATCAGGTTCAAGTTTGTAAG 58.785 41.667 0.00 0.00 0.00 2.34
794 5345 4.203226 TGTGCATCAGGTTCAAGTTTGTA 58.797 39.130 0.00 0.00 0.00 2.41
805 5466 2.306805 TCTTTCTCCATGTGCATCAGGT 59.693 45.455 0.00 0.00 0.00 4.00
840 5501 1.358877 GACTACACGTGCATGCATCA 58.641 50.000 25.64 6.57 0.00 3.07
841 5502 0.652592 GGACTACACGTGCATGCATC 59.347 55.000 25.64 14.96 33.62 3.91
854 5567 7.210174 TGCATCATGTTTCATACTAGGACTAC 58.790 38.462 0.00 0.00 0.00 2.73
882 5595 2.021457 TCTGAATCACAGGCATGCATG 58.979 47.619 29.33 29.33 45.76 4.06
883 5596 2.430248 TCTGAATCACAGGCATGCAT 57.570 45.000 21.36 10.32 45.76 3.96
884 5597 3.961582 TCTGAATCACAGGCATGCA 57.038 47.368 21.36 0.00 45.76 3.96
931 5644 4.893601 TGTCGGTGCGGTGCGAAA 62.894 61.111 0.00 0.00 0.00 3.46
975 5688 3.885484 ATCGCATCACCAAATCGAATC 57.115 42.857 0.00 0.00 32.74 2.52
1013 5726 2.961526 CTTGCTAAGCTAGGGAACGA 57.038 50.000 0.00 0.00 0.00 3.85
1026 5739 4.163441 TGGTTTGCTATATGGCTTGCTA 57.837 40.909 12.66 0.00 0.00 3.49
1027 5740 3.017048 TGGTTTGCTATATGGCTTGCT 57.983 42.857 12.66 0.00 0.00 3.91
1028 5741 3.491447 CCTTGGTTTGCTATATGGCTTGC 60.491 47.826 12.66 2.22 0.00 4.01
1029 5742 3.491447 GCCTTGGTTTGCTATATGGCTTG 60.491 47.826 12.66 0.00 36.52 4.01
1031 5744 2.310538 GCCTTGGTTTGCTATATGGCT 58.689 47.619 12.66 0.00 36.52 4.75
1032 5745 1.341209 GGCCTTGGTTTGCTATATGGC 59.659 52.381 3.73 3.73 38.49 4.40
1034 5747 2.290641 GACGGCCTTGGTTTGCTATATG 59.709 50.000 0.00 0.00 0.00 1.78
1148 5867 2.278013 GGAGCGTCGTCGTGATCC 60.278 66.667 3.66 8.35 39.49 3.36
1170 5889 3.672397 CCATAATCTCGAGCAAGATGTCG 59.328 47.826 7.81 0.00 36.14 4.35
1324 6048 4.202070 GGTTAGTGGTCTCTCTGCATAGAC 60.202 50.000 13.05 13.05 41.16 2.59
1325 6049 3.954904 GGTTAGTGGTCTCTCTGCATAGA 59.045 47.826 1.43 1.43 0.00 1.98
1329 6053 1.203187 AGGGTTAGTGGTCTCTCTGCA 60.203 52.381 0.00 0.00 0.00 4.41
1332 6056 1.433592 ACCAGGGTTAGTGGTCTCTCT 59.566 52.381 0.00 0.00 45.74 3.10
1498 6231 2.288518 CGCATAGGTCTAAAGAGCCCTC 60.289 54.545 5.59 0.00 43.11 4.30
1540 6273 0.767375 TTTGAGAGGAAGGTGCAGCT 59.233 50.000 13.85 13.85 0.00 4.24
1541 6274 1.268079 GTTTTGAGAGGAAGGTGCAGC 59.732 52.381 8.11 8.11 0.00 5.25
1759 6495 5.552178 GGGGTCCTTGTAGCTATTTATCAG 58.448 45.833 0.00 0.00 0.00 2.90
1967 6703 5.772672 AGTAGTAGCCAGACTGATATCTTGG 59.227 44.000 3.32 7.80 0.00 3.61
1988 6724 1.476891 CTTCTGCGCTTGTAGGGAGTA 59.523 52.381 9.73 0.00 0.00 2.59
2179 6925 6.387192 TCTCTTCAAATCAATAACCAGGGA 57.613 37.500 0.00 0.00 0.00 4.20
2180 6926 6.096001 CCTTCTCTTCAAATCAATAACCAGGG 59.904 42.308 0.00 0.00 0.00 4.45
2182 6928 6.886459 TCCCTTCTCTTCAAATCAATAACCAG 59.114 38.462 0.00 0.00 0.00 4.00
2184 6930 7.112779 TCTCCCTTCTCTTCAAATCAATAACC 58.887 38.462 0.00 0.00 0.00 2.85
2271 7017 4.690184 TCGCTACGAGAACAGTTTCATA 57.310 40.909 0.00 0.00 33.72 2.15
2400 7157 7.497249 ACAGAAGAAGTGGTTATATTCATGCTC 59.503 37.037 0.00 0.00 0.00 4.26
2437 7194 7.748847 ACCGTTCATGTTGTATCAATTTACTC 58.251 34.615 0.00 0.00 0.00 2.59
2460 7217 2.202837 GGTCACCGGCGATGTACC 60.203 66.667 9.30 7.87 0.00 3.34
2524 8290 2.525381 CGAGGAGGAGGGATGGGG 60.525 72.222 0.00 0.00 0.00 4.96
2538 8304 1.360551 CTCCGACTACCATGCCGAG 59.639 63.158 0.00 0.00 0.00 4.63
2569 8335 0.802994 TCGTGTTTGCTGTCGAACGT 60.803 50.000 2.41 0.00 39.04 3.99
2630 8396 1.206745 CGACTACAACATAGGCGCCG 61.207 60.000 23.20 9.91 39.36 6.46
2744 8510 7.906527 GTCGTCCACAATTACCATAATAAACAC 59.093 37.037 0.00 0.00 0.00 3.32
2777 8543 4.311816 AGACACAATCAAAACAAGCTGG 57.688 40.909 0.00 0.00 0.00 4.85
2794 8560 0.172578 CAAGATCACGCGGGTAGACA 59.827 55.000 8.89 0.00 0.00 3.41
2804 8570 9.318041 CTTGAAAATAACACTAACAAGATCACG 57.682 33.333 0.00 0.00 36.43 4.35
2871 8637 2.358247 TTCGCCGGTGCCTTCTTC 60.358 61.111 11.05 0.00 0.00 2.87
2940 8706 0.248565 GTCGGTTTCCACCCTCTACC 59.751 60.000 0.00 0.00 40.52 3.18
2956 8722 4.537533 CGACGCGCCGAATTGTCG 62.538 66.667 9.96 16.54 46.57 4.35
2970 8736 1.438222 GTTTTTCGCTCGTGCCGAC 60.438 57.895 3.52 0.00 35.36 4.79
2974 8740 0.303493 TCACAGTTTTTCGCTCGTGC 59.697 50.000 0.00 0.00 0.00 5.34
2981 8747 4.023279 TGAATGGGTCATCACAGTTTTTCG 60.023 41.667 0.00 0.00 0.00 3.46
2987 8753 2.877300 GCACTGAATGGGTCATCACAGT 60.877 50.000 11.71 11.71 39.70 3.55
2992 8758 3.827008 TCTAGCACTGAATGGGTCATC 57.173 47.619 0.00 0.00 35.07 2.92
3017 8783 1.963747 GTGTTGCAGACGCCAAATAC 58.036 50.000 0.00 0.00 37.32 1.89
3026 8792 0.242017 GGCATTCAGGTGTTGCAGAC 59.758 55.000 8.99 0.00 38.12 3.51
3027 8793 0.178995 TGGCATTCAGGTGTTGCAGA 60.179 50.000 8.99 0.00 38.12 4.26
3028 8794 0.242825 CTGGCATTCAGGTGTTGCAG 59.757 55.000 0.00 0.00 39.76 4.41
3029 8795 2.343506 CTGGCATTCAGGTGTTGCA 58.656 52.632 0.00 0.00 39.76 4.08
3037 8803 1.134367 CATCCAAGCACTGGCATTCAG 59.866 52.381 0.00 0.00 45.98 3.02
3038 8804 1.179152 CATCCAAGCACTGGCATTCA 58.821 50.000 0.00 0.00 45.98 2.57
3039 8805 0.458669 CCATCCAAGCACTGGCATTC 59.541 55.000 0.00 0.00 45.98 2.67
3040 8806 2.587080 CCATCCAAGCACTGGCATT 58.413 52.632 0.00 0.00 45.98 3.56
3041 8807 4.349682 CCATCCAAGCACTGGCAT 57.650 55.556 0.00 0.00 45.98 4.40
3045 8811 0.465097 CCTAGGCCATCCAAGCACTG 60.465 60.000 5.01 0.00 33.74 3.66
3046 8812 0.916358 ACCTAGGCCATCCAAGCACT 60.916 55.000 9.30 0.00 33.74 4.40
3047 8813 0.837272 TACCTAGGCCATCCAAGCAC 59.163 55.000 9.30 0.00 33.74 4.40
3048 8814 1.819753 ATACCTAGGCCATCCAAGCA 58.180 50.000 9.30 0.00 33.74 3.91
3049 8815 2.784347 GAATACCTAGGCCATCCAAGC 58.216 52.381 9.30 0.00 33.74 4.01
3050 8816 2.368875 ACGAATACCTAGGCCATCCAAG 59.631 50.000 9.30 0.00 33.74 3.61
3051 8817 2.367567 GACGAATACCTAGGCCATCCAA 59.632 50.000 9.30 0.00 33.74 3.53
3052 8818 1.968493 GACGAATACCTAGGCCATCCA 59.032 52.381 9.30 0.00 33.74 3.41
3053 8819 1.275573 GGACGAATACCTAGGCCATCC 59.724 57.143 9.30 4.05 0.00 3.51
3054 8820 1.067776 CGGACGAATACCTAGGCCATC 60.068 57.143 9.30 3.37 0.00 3.51
3055 8821 0.966920 CGGACGAATACCTAGGCCAT 59.033 55.000 9.30 0.00 0.00 4.40
3056 8822 0.396139 ACGGACGAATACCTAGGCCA 60.396 55.000 9.30 0.00 0.00 5.36
3057 8823 1.538950 CTACGGACGAATACCTAGGCC 59.461 57.143 9.30 0.00 0.00 5.19
3058 8824 2.498167 TCTACGGACGAATACCTAGGC 58.502 52.381 9.30 0.00 0.00 3.93
3059 8825 4.142945 CGATTCTACGGACGAATACCTAGG 60.143 50.000 7.41 7.41 31.62 3.02
3060 8826 4.687948 TCGATTCTACGGACGAATACCTAG 59.312 45.833 0.00 0.00 31.62 3.02
3061 8827 4.631131 TCGATTCTACGGACGAATACCTA 58.369 43.478 0.00 0.00 31.62 3.08
3062 8828 3.470709 TCGATTCTACGGACGAATACCT 58.529 45.455 0.00 0.00 31.62 3.08
3063 8829 3.885484 TCGATTCTACGGACGAATACC 57.115 47.619 0.00 0.00 31.62 2.73
3067 8833 2.852143 GCGATTCGATTCTACGGACGAA 60.852 50.000 10.88 0.00 45.88 3.85
3068 8834 1.333524 GCGATTCGATTCTACGGACGA 60.334 52.381 10.88 0.00 0.00 4.20
3069 8835 1.043224 GCGATTCGATTCTACGGACG 58.957 55.000 10.88 0.00 0.00 4.79
3070 8836 1.043224 CGCGATTCGATTCTACGGAC 58.957 55.000 10.88 0.00 41.67 4.79
3071 8837 0.939419 TCGCGATTCGATTCTACGGA 59.061 50.000 3.71 0.00 43.16 4.69
3072 8838 3.449789 TCGCGATTCGATTCTACGG 57.550 52.632 3.71 0.00 43.16 4.02
3081 8847 3.483922 GCTCTATCCAATATCGCGATTCG 59.516 47.826 28.81 15.31 40.15 3.34
3082 8848 3.799420 GGCTCTATCCAATATCGCGATTC 59.201 47.826 28.81 0.00 0.00 2.52
3083 8849 3.430929 GGGCTCTATCCAATATCGCGATT 60.431 47.826 28.81 8.25 0.00 3.34
3084 8850 2.101582 GGGCTCTATCCAATATCGCGAT 59.898 50.000 26.78 26.78 0.00 4.58
3085 8851 1.476891 GGGCTCTATCCAATATCGCGA 59.523 52.381 13.09 13.09 0.00 5.87
3086 8852 1.799181 CGGGCTCTATCCAATATCGCG 60.799 57.143 0.00 0.00 0.00 5.87
3087 8853 1.927895 CGGGCTCTATCCAATATCGC 58.072 55.000 0.00 0.00 0.00 4.58
3088 8854 1.471676 GGCGGGCTCTATCCAATATCG 60.472 57.143 0.00 0.00 0.00 2.92
3089 8855 1.555075 TGGCGGGCTCTATCCAATATC 59.445 52.381 2.38 0.00 0.00 1.63
3090 8856 1.556911 CTGGCGGGCTCTATCCAATAT 59.443 52.381 2.38 0.00 0.00 1.28
3091 8857 0.976641 CTGGCGGGCTCTATCCAATA 59.023 55.000 2.38 0.00 0.00 1.90
3092 8858 1.757306 CTGGCGGGCTCTATCCAAT 59.243 57.895 2.38 0.00 0.00 3.16
3093 8859 3.106986 GCTGGCGGGCTCTATCCAA 62.107 63.158 2.38 0.00 0.00 3.53
3094 8860 3.550431 GCTGGCGGGCTCTATCCA 61.550 66.667 2.38 0.00 0.00 3.41
3095 8861 3.550431 TGCTGGCGGGCTCTATCC 61.550 66.667 2.38 0.00 0.00 2.59
3096 8862 2.280457 GTGCTGGCGGGCTCTATC 60.280 66.667 2.38 0.00 0.00 2.08
3097 8863 4.227134 CGTGCTGGCGGGCTCTAT 62.227 66.667 2.38 0.00 0.00 1.98
3104 8870 2.677003 AATTTCGTCGTGCTGGCGG 61.677 57.895 3.82 0.00 0.00 6.13
3105 8871 1.509787 CAATTTCGTCGTGCTGGCG 60.510 57.895 0.00 0.00 0.00 5.69
3106 8872 1.797537 GCAATTTCGTCGTGCTGGC 60.798 57.895 0.00 0.00 35.36 4.85
3107 8873 1.868997 AGCAATTTCGTCGTGCTGG 59.131 52.632 7.22 0.00 46.58 4.85
3110 8876 0.095417 GAGGAGCAATTTCGTCGTGC 59.905 55.000 0.00 0.00 38.59 5.34
3111 8877 0.721718 GGAGGAGCAATTTCGTCGTG 59.278 55.000 0.00 0.00 33.83 4.35
3112 8878 0.391263 GGGAGGAGCAATTTCGTCGT 60.391 55.000 0.00 0.00 33.83 4.34
3113 8879 1.090052 GGGGAGGAGCAATTTCGTCG 61.090 60.000 0.00 0.00 33.83 5.12
3114 8880 0.748367 GGGGGAGGAGCAATTTCGTC 60.748 60.000 0.00 0.00 0.00 4.20
3115 8881 1.303282 GGGGGAGGAGCAATTTCGT 59.697 57.895 0.00 0.00 0.00 3.85
3116 8882 4.242602 GGGGGAGGAGCAATTTCG 57.757 61.111 0.00 0.00 0.00 3.46
3131 8897 2.769095 TGGAAGACAAAAACTTTGGGGG 59.231 45.455 4.30 0.00 0.00 5.40
3132 8898 4.479786 TTGGAAGACAAAAACTTTGGGG 57.520 40.909 4.30 0.00 35.79 4.96
3143 8909 0.040514 CGCGCACATTTGGAAGACAA 60.041 50.000 8.75 0.00 37.28 3.18
3144 8910 1.573932 CGCGCACATTTGGAAGACA 59.426 52.632 8.75 0.00 0.00 3.41
3145 8911 1.154225 CCGCGCACATTTGGAAGAC 60.154 57.895 8.75 0.00 0.00 3.01
3146 8912 2.331893 CCCGCGCACATTTGGAAGA 61.332 57.895 8.75 0.00 0.00 2.87
3147 8913 2.179018 CCCGCGCACATTTGGAAG 59.821 61.111 8.75 0.00 0.00 3.46
3148 8914 4.049640 GCCCGCGCACATTTGGAA 62.050 61.111 8.75 0.00 34.03 3.53
3159 8925 2.682876 ATAACCAAACGTGCCCGCG 61.683 57.895 0.00 0.00 37.70 6.46
3160 8926 1.154112 CATAACCAAACGTGCCCGC 60.154 57.895 0.00 0.00 37.70 6.13
3161 8927 0.594110 AACATAACCAAACGTGCCCG 59.406 50.000 0.00 0.00 40.83 6.13
3162 8928 1.400500 CGAACATAACCAAACGTGCCC 60.400 52.381 0.00 0.00 0.00 5.36
3163 8929 1.532007 TCGAACATAACCAAACGTGCC 59.468 47.619 0.00 0.00 0.00 5.01
3164 8930 2.953640 TCGAACATAACCAAACGTGC 57.046 45.000 0.00 0.00 0.00 5.34
3165 8931 3.212103 CGTTCGAACATAACCAAACGTG 58.788 45.455 26.71 3.07 35.89 4.49
3166 8932 2.865551 ACGTTCGAACATAACCAAACGT 59.134 40.909 26.71 13.33 45.31 3.99
3167 8933 3.060406 TCACGTTCGAACATAACCAAACG 60.060 43.478 26.71 12.68 43.56 3.60
3168 8934 4.206088 GTCACGTTCGAACATAACCAAAC 58.794 43.478 26.71 9.69 0.00 2.93
3169 8935 3.248125 GGTCACGTTCGAACATAACCAAA 59.752 43.478 26.71 1.63 0.00 3.28
3170 8936 2.801679 GGTCACGTTCGAACATAACCAA 59.198 45.455 26.71 3.14 0.00 3.67
3171 8937 2.223994 TGGTCACGTTCGAACATAACCA 60.224 45.455 28.15 28.15 33.47 3.67
3172 8938 2.406130 TGGTCACGTTCGAACATAACC 58.594 47.619 26.71 25.70 0.00 2.85
3173 8939 3.181524 CCATGGTCACGTTCGAACATAAC 60.182 47.826 26.71 19.02 41.45 1.89
3174 8940 2.997303 CCATGGTCACGTTCGAACATAA 59.003 45.455 26.71 9.04 41.45 1.90
3175 8941 2.231721 TCCATGGTCACGTTCGAACATA 59.768 45.455 26.71 9.38 41.45 2.29
3176 8942 1.001520 TCCATGGTCACGTTCGAACAT 59.998 47.619 26.71 10.48 44.24 2.71
3177 8943 0.389757 TCCATGGTCACGTTCGAACA 59.610 50.000 26.71 7.70 36.93 3.18
3178 8944 0.788391 GTCCATGGTCACGTTCGAAC 59.212 55.000 18.47 18.47 0.00 3.95
3179 8945 0.389757 TGTCCATGGTCACGTTCGAA 59.610 50.000 12.58 0.00 0.00 3.71
3180 8946 0.038618 CTGTCCATGGTCACGTTCGA 60.039 55.000 12.58 0.00 0.00 3.71
3181 8947 0.319555 ACTGTCCATGGTCACGTTCG 60.320 55.000 12.58 2.65 0.00 3.95
3182 8948 1.148310 CACTGTCCATGGTCACGTTC 58.852 55.000 12.58 0.00 0.00 3.95
3183 8949 0.250295 CCACTGTCCATGGTCACGTT 60.250 55.000 12.58 0.00 32.08 3.99
3184 8950 1.371183 CCACTGTCCATGGTCACGT 59.629 57.895 12.58 9.57 32.08 4.49
3185 8951 4.284123 CCACTGTCCATGGTCACG 57.716 61.111 12.58 8.95 32.08 4.35
3190 8956 2.268920 CCCGACCACTGTCCATGG 59.731 66.667 4.97 4.97 43.43 3.66
3191 8957 2.436646 GCCCGACCACTGTCCATG 60.437 66.667 0.00 0.00 38.32 3.66
3192 8958 4.082523 CGCCCGACCACTGTCCAT 62.083 66.667 0.00 0.00 38.32 3.41
3195 8961 2.845752 TTATGCGCCCGACCACTGTC 62.846 60.000 4.18 0.00 38.18 3.51
3196 8962 2.252072 ATTATGCGCCCGACCACTGT 62.252 55.000 4.18 0.00 0.00 3.55
3197 8963 1.498865 GATTATGCGCCCGACCACTG 61.499 60.000 4.18 0.00 0.00 3.66
3198 8964 1.227556 GATTATGCGCCCGACCACT 60.228 57.895 4.18 0.00 0.00 4.00
3199 8965 0.884704 ATGATTATGCGCCCGACCAC 60.885 55.000 4.18 0.00 0.00 4.16
3200 8966 0.602638 GATGATTATGCGCCCGACCA 60.603 55.000 4.18 0.00 0.00 4.02
3201 8967 1.626654 CGATGATTATGCGCCCGACC 61.627 60.000 4.18 0.00 0.00 4.79
3202 8968 0.666274 TCGATGATTATGCGCCCGAC 60.666 55.000 4.18 0.00 0.00 4.79
3203 8969 0.032815 TTCGATGATTATGCGCCCGA 59.967 50.000 4.18 0.00 0.00 5.14
3204 8970 0.865111 TTTCGATGATTATGCGCCCG 59.135 50.000 4.18 0.00 0.00 6.13
3205 8971 1.601903 TGTTTCGATGATTATGCGCCC 59.398 47.619 4.18 0.00 0.00 6.13
3206 8972 3.542712 ATGTTTCGATGATTATGCGCC 57.457 42.857 4.18 0.00 0.00 6.53
3207 8973 5.107491 TGACTATGTTTCGATGATTATGCGC 60.107 40.000 0.00 0.00 0.00 6.09
3208 8974 6.452244 TGACTATGTTTCGATGATTATGCG 57.548 37.500 0.00 0.00 0.00 4.73
3209 8975 8.021955 TGATGACTATGTTTCGATGATTATGC 57.978 34.615 0.00 0.00 0.00 3.14
3213 8979 8.896744 ACATTTGATGACTATGTTTCGATGATT 58.103 29.630 0.00 0.00 0.00 2.57
3214 8980 8.442632 ACATTTGATGACTATGTTTCGATGAT 57.557 30.769 0.00 0.00 0.00 2.45
3215 8981 7.548780 TGACATTTGATGACTATGTTTCGATGA 59.451 33.333 0.00 0.00 32.94 2.92
3216 8982 7.687445 TGACATTTGATGACTATGTTTCGATG 58.313 34.615 0.00 0.00 32.94 3.84
3217 8983 7.848223 TGACATTTGATGACTATGTTTCGAT 57.152 32.000 0.00 0.00 32.94 3.59
3218 8984 7.848223 ATGACATTTGATGACTATGTTTCGA 57.152 32.000 0.00 0.00 32.94 3.71
3219 8985 8.900511 AAATGACATTTGATGACTATGTTTCG 57.099 30.769 12.62 0.00 32.94 3.46
3220 8986 9.294030 GGAAATGACATTTGATGACTATGTTTC 57.706 33.333 18.00 0.00 32.94 2.78
3221 8987 9.028284 AGGAAATGACATTTGATGACTATGTTT 57.972 29.630 18.00 0.00 32.94 2.83
3222 8988 8.585471 AGGAAATGACATTTGATGACTATGTT 57.415 30.769 18.00 0.00 32.94 2.71
3223 8989 8.585471 AAGGAAATGACATTTGATGACTATGT 57.415 30.769 18.00 0.00 35.33 2.29
3280 9046 9.807649 GGTTGAATTGTGCTATTTATCTTTGAT 57.192 29.630 0.00 0.00 0.00 2.57
3281 9047 8.250332 GGGTTGAATTGTGCTATTTATCTTTGA 58.750 33.333 0.00 0.00 0.00 2.69
3282 9048 8.034215 TGGGTTGAATTGTGCTATTTATCTTTG 58.966 33.333 0.00 0.00 0.00 2.77
3283 9049 8.133024 TGGGTTGAATTGTGCTATTTATCTTT 57.867 30.769 0.00 0.00 0.00 2.52
3284 9050 7.716799 TGGGTTGAATTGTGCTATTTATCTT 57.283 32.000 0.00 0.00 0.00 2.40
3285 9051 7.716799 TTGGGTTGAATTGTGCTATTTATCT 57.283 32.000 0.00 0.00 0.00 1.98
3286 9052 8.947055 AATTGGGTTGAATTGTGCTATTTATC 57.053 30.769 0.00 0.00 0.00 1.75
3287 9053 7.986889 GGAATTGGGTTGAATTGTGCTATTTAT 59.013 33.333 0.00 0.00 0.00 1.40
3288 9054 7.327214 GGAATTGGGTTGAATTGTGCTATTTA 58.673 34.615 0.00 0.00 0.00 1.40
3289 9055 6.172630 GGAATTGGGTTGAATTGTGCTATTT 58.827 36.000 0.00 0.00 0.00 1.40
3290 9056 5.338300 GGGAATTGGGTTGAATTGTGCTATT 60.338 40.000 0.00 0.00 0.00 1.73
3291 9057 4.162131 GGGAATTGGGTTGAATTGTGCTAT 59.838 41.667 0.00 0.00 0.00 2.97
3292 9058 3.513515 GGGAATTGGGTTGAATTGTGCTA 59.486 43.478 0.00 0.00 0.00 3.49
3293 9059 2.302733 GGGAATTGGGTTGAATTGTGCT 59.697 45.455 0.00 0.00 0.00 4.40
3294 9060 2.302733 AGGGAATTGGGTTGAATTGTGC 59.697 45.455 0.00 0.00 0.00 4.57
3295 9061 3.865684 GCAGGGAATTGGGTTGAATTGTG 60.866 47.826 0.00 0.00 0.00 3.33
3296 9062 2.302733 GCAGGGAATTGGGTTGAATTGT 59.697 45.455 0.00 0.00 0.00 2.71
3297 9063 2.302445 TGCAGGGAATTGGGTTGAATTG 59.698 45.455 0.00 0.00 0.00 2.32
3298 9064 2.302733 GTGCAGGGAATTGGGTTGAATT 59.697 45.455 0.00 0.00 0.00 2.17
3299 9065 1.901833 GTGCAGGGAATTGGGTTGAAT 59.098 47.619 0.00 0.00 0.00 2.57
3300 9066 1.133199 AGTGCAGGGAATTGGGTTGAA 60.133 47.619 0.00 0.00 0.00 2.69
3301 9067 0.482446 AGTGCAGGGAATTGGGTTGA 59.518 50.000 0.00 0.00 0.00 3.18
3302 9068 2.214376 TAGTGCAGGGAATTGGGTTG 57.786 50.000 0.00 0.00 0.00 3.77
3303 9069 3.473113 AATAGTGCAGGGAATTGGGTT 57.527 42.857 0.00 0.00 0.00 4.11
3304 9070 3.473113 AAATAGTGCAGGGAATTGGGT 57.527 42.857 0.00 0.00 0.00 4.51
3305 9071 3.891366 CCTAAATAGTGCAGGGAATTGGG 59.109 47.826 0.00 0.00 0.00 4.12
3313 9079 3.555966 CTTTCCCCCTAAATAGTGCAGG 58.444 50.000 0.00 0.00 0.00 4.85
3314 9080 3.202151 TCCTTTCCCCCTAAATAGTGCAG 59.798 47.826 0.00 0.00 0.00 4.41
3315 9081 3.194620 TCCTTTCCCCCTAAATAGTGCA 58.805 45.455 0.00 0.00 0.00 4.57
3316 9082 3.945640 TCCTTTCCCCCTAAATAGTGC 57.054 47.619 0.00 0.00 0.00 4.40
3317 9083 4.986783 GGATCCTTTCCCCCTAAATAGTG 58.013 47.826 3.84 0.00 38.75 2.74
3329 9095 1.235756 ATTGGGGAGGGATCCTTTCC 58.764 55.000 13.11 13.11 44.62 3.13
3330 9096 3.657727 TCATATTGGGGAGGGATCCTTTC 59.342 47.826 12.58 1.70 31.76 2.62
3331 9097 3.659686 CTCATATTGGGGAGGGATCCTTT 59.340 47.826 12.58 0.00 31.76 3.11
3332 9098 3.263724 CTCATATTGGGGAGGGATCCTT 58.736 50.000 12.58 3.01 31.76 3.36
3333 9099 2.926601 CTCATATTGGGGAGGGATCCT 58.073 52.381 12.58 0.00 36.03 3.24
3334 9100 1.283321 GCTCATATTGGGGAGGGATCC 59.717 57.143 1.92 1.92 0.00 3.36
3335 9101 1.283321 GGCTCATATTGGGGAGGGATC 59.717 57.143 0.00 0.00 0.00 3.36
3336 9102 1.376649 GGCTCATATTGGGGAGGGAT 58.623 55.000 0.00 0.00 0.00 3.85
3337 9103 0.772124 GGGCTCATATTGGGGAGGGA 60.772 60.000 0.00 0.00 0.00 4.20
3338 9104 0.773700 AGGGCTCATATTGGGGAGGG 60.774 60.000 0.00 0.00 0.00 4.30
3339 9105 2.044793 TAGGGCTCATATTGGGGAGG 57.955 55.000 0.00 0.00 0.00 4.30
3340 9106 3.308688 CCATTAGGGCTCATATTGGGGAG 60.309 52.174 0.00 0.00 0.00 4.30
3341 9107 2.649312 CCATTAGGGCTCATATTGGGGA 59.351 50.000 0.00 0.00 0.00 4.81
3342 9108 3.091633 CCATTAGGGCTCATATTGGGG 57.908 52.381 0.00 0.00 0.00 4.96
3355 9121 0.744414 CTGACGTGGTGCCCATTAGG 60.744 60.000 0.00 0.00 35.28 2.69
3356 9122 1.369091 GCTGACGTGGTGCCCATTAG 61.369 60.000 0.00 0.00 35.28 1.73
3357 9123 1.376683 GCTGACGTGGTGCCCATTA 60.377 57.895 0.00 0.00 35.28 1.90
3358 9124 2.672996 GCTGACGTGGTGCCCATT 60.673 61.111 0.00 0.00 35.28 3.16
3363 9129 4.152625 GATGCGCTGACGTGGTGC 62.153 66.667 9.73 14.31 42.83 5.01
3364 9130 3.842126 CGATGCGCTGACGTGGTG 61.842 66.667 9.73 0.00 42.83 4.17
3367 9133 3.842126 CACCGATGCGCTGACGTG 61.842 66.667 9.73 6.41 42.83 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.