AutoCloner

Multiple sequence alignment - TraesCS4A01G249700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G249700	chr4A	100.000	2291	0	0	1	2291	560950669	560952959	0.000000e+00	4231.0
1	TraesCS4A01G249700	chr4A	82.985	670	64	30	720	1377	560964698	560965329	5.530000e-156	560.0
2	TraesCS4A01G249700	chr4A	95.294	85	4	0	1006	1090	46561064	46561148	3.970000e-28	135.0
3	TraesCS4A01G249700	chr6B	99.141	815	7	0	1477	2291	698416040	698416854	0.000000e+00	1467.0
4	TraesCS4A01G249700	chr6B	98.571	70	0	1	391	460	17496263	17496331	3.090000e-24	122.0
5	TraesCS4A01G249700	chr3A	98.775	816	10	0	1476	2291	41541969	41542784	0.000000e+00	1452.0
6	TraesCS4A01G249700	chr3A	100.000	32	0	0	1476	1507	675309352	675309321	2.460000e-05	60.2
7	TraesCS4A01G249700	chr3A	100.000	29	0	0	1481	1509	42064302	42064274	1.000000e-03	54.7
8	TraesCS4A01G249700	chr6A	98.650	815	11	0	1477	2291	558766387	558767201	0.000000e+00	1445.0
9	TraesCS4A01G249700	chr2B	98.650	815	10	1	1477	2291	571199860	571199047	0.000000e+00	1443.0
10	TraesCS4A01G249700	chr2B	83.206	131	19	3	1715	1843	34087628	34087499	1.440000e-22	117.0
11	TraesCS4A01G249700	chr4B	87.554	932	46	24	587	1478	57806760	57805859	0.000000e+00	1014.0
12	TraesCS4A01G249700	chr4B	84.602	578	43	29	720	1292	57801867	57801331	1.200000e-147	532.0
13	TraesCS4A01G249700	chr4B	87.415	294	13	8	2	287	57807291	57807014	1.320000e-82	316.0
14	TraesCS4A01G249700	chr4B	96.721	61	2	0	337	397	57807006	57806946	4.030000e-18	102.0
15	TraesCS4A01G249700	chr4D	83.106	1101	54	40	454	1484	39395074	39394036	0.000000e+00	881.0
16	TraesCS4A01G249700	chr4D	87.037	540	27	26	757	1292	39353554	39354054	9.180000e-159	569.0
17	TraesCS4A01G249700	chr4D	84.524	336	20	14	1	325	39395840	39395526	1.030000e-78	303.0
18	TraesCS4A01G249700	chr4D	97.468	79	1	1	391	469	76102513	76102590	1.430000e-27	134.0
19	TraesCS4A01G249700	chr4D	94.118	85	5	0	1006	1090	418358169	418358085	1.850000e-26	130.0
20	TraesCS4A01G249700	chr4D	98.551	69	0	1	391	459	220879284	220879217	1.110000e-23	121.0
21	TraesCS4A01G249700	chr4D	98.305	59	1	0	339	397	39395131	39395073	1.120000e-18	104.0
22	TraesCS4A01G249700	chr7B	92.857	84	6	0	1006	1089	469742206	469742289	3.090000e-24	122.0
23	TraesCS4A01G249700	chr6D	98.551	69	0	1	391	459	46011663	46011730	1.110000e-23	121.0
24	TraesCS4A01G249700	chr6D	94.737	76	3	1	391	466	64970223	64970297	1.440000e-22	117.0
25	TraesCS4A01G249700	chr6D	100.000	29	0	0	1481	1509	87142774	87142746	1.000000e-03	54.7
26	TraesCS4A01G249700	chr1D	97.222	72	1	1	391	462	7424111	7424181	1.110000e-23	121.0
27	TraesCS4A01G249700	chr1B	95.946	74	2	1	391	464	185228125	185228197	4.000000e-23	119.0
28	TraesCS4A01G249700	chr2A	93.750	80	1	3	396	472	11747976	11748054	1.440000e-22	117.0
29	TraesCS4A01G249700	chr3B	93.590	78	3	2	391	467	764192749	764192673	5.170000e-22	115.0
30	TraesCS4A01G249700	chr3B	96.970	33	1	0	1477	1509	590996526	590996494	3.180000e-04	56.5
31	TraesCS4A01G249700	chr7D	97.297	37	1	0	1739	1775	13316006	13315970	1.900000e-06	63.9
32	TraesCS4A01G249700	chr5D	100.000	29	0	0	1481	1509	17814446	17814474	1.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G249700	chr4A	560950669	560952959	2290	False	4231.000000	4231	100.000	1	2291	1	chr4A.!!$F2	2290
1	TraesCS4A01G249700	chr4A	560964698	560965329	631	False	560.000000	560	82.985	720	1377	1	chr4A.!!$F3	657
2	TraesCS4A01G249700	chr6B	698416040	698416854	814	False	1467.000000	1467	99.141	1477	2291	1	chr6B.!!$F2	814
3	TraesCS4A01G249700	chr3A	41541969	41542784	815	False	1452.000000	1452	98.775	1476	2291	1	chr3A.!!$F1	815
4	TraesCS4A01G249700	chr6A	558766387	558767201	814	False	1445.000000	1445	98.650	1477	2291	1	chr6A.!!$F1	814
5	TraesCS4A01G249700	chr2B	571199047	571199860	813	True	1443.000000	1443	98.650	1477	2291	1	chr2B.!!$R2	814
6	TraesCS4A01G249700	chr4B	57801331	57807291	5960	True	491.000000	1014	89.073	2	1478	4	chr4B.!!$R1	1476
7	TraesCS4A01G249700	chr4D	39353554	39354054	500	False	569.000000	569	87.037	757	1292	1	chr4D.!!$F1	535
8	TraesCS4A01G249700	chr4D	39394036	39395840	1804	True	429.333333	881	88.645	1	1484	3	chr4D.!!$R3	1483

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
544	942	0.02877	CAAACGCACGGCAGAAAGAA	59.971	50.0	0.0	0.0	0.0	2.52	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1361	6655	0.179129	CAATCAACTCATTGGCCGCC	60.179	55.0	1.04	1.04	36.39	6.13	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
36	40	2.779755	TGCCACTGGTTCGTTGATAT	57.220	45.000	0.00	0.00	0.00	1.63
67	71	2.286365	TTGACACTTCCCATCCAACC	57.714	50.000	0.00	0.00	0.00	3.77
107	111	3.519579	TCAACACGTACCGTCTGAAAAA	58.480	40.909	0.00	0.00	38.32	1.94
176	180	0.175531	CGCAAACCCCAAATCCCATC	59.824	55.000	0.00	0.00	0.00	3.51
177	181	0.541392	GCAAACCCCAAATCCCATCC	59.459	55.000	0.00	0.00	0.00	3.51
178	182	1.949799	CAAACCCCAAATCCCATCCA	58.050	50.000	0.00	0.00	0.00	3.41
217	221	0.107017	ACATGCTCCCCAAAGATCGG	60.107	55.000	0.00	0.00	0.00	4.18
231	235	0.458025	GATCGGGTCCAGTGAACGAC	60.458	60.000	0.00	0.00	35.73	4.34
234	238	2.028484	GGTCCAGTGAACGACGCA	59.972	61.111	0.00	0.00	0.00	5.24
238	242	2.604174	CCAGTGAACGACGCAACCC	61.604	63.158	0.00	0.00	0.00	4.11
239	243	1.594293	CAGTGAACGACGCAACCCT	60.594	57.895	0.00	0.00	0.00	4.34
245	257	1.441732	AACGACGCAACCCTTCCAAC	61.442	55.000	0.00	0.00	0.00	3.77
251	263	1.894756	CAACCCTTCCAACCGCGAA	60.895	57.895	8.23	0.00	0.00	4.70
271	283	1.376037	GCTTCCCCTCCGTTCACTG	60.376	63.158	0.00	0.00	0.00	3.66
325	337	3.691609	GGATTCCCTTCACTACTTGCTTG	59.308	47.826	0.00	0.00	0.00	4.01
326	338	2.185004	TCCCTTCACTACTTGCTTGC	57.815	50.000	0.00	0.00	0.00	4.01
328	340	1.808945	CCCTTCACTACTTGCTTGCTG	59.191	52.381	0.00	0.00	0.00	4.41
329	341	2.550855	CCCTTCACTACTTGCTTGCTGA	60.551	50.000	0.00	0.00	0.00	4.26
330	342	2.740981	CCTTCACTACTTGCTTGCTGAG	59.259	50.000	0.00	0.00	0.00	3.35
331	343	3.555795	CCTTCACTACTTGCTTGCTGAGA	60.556	47.826	0.00	0.00	0.00	3.27
332	344	3.309961	TCACTACTTGCTTGCTGAGAG	57.690	47.619	0.00	0.00	0.00	3.20
333	345	2.893489	TCACTACTTGCTTGCTGAGAGA	59.107	45.455	0.00	0.00	0.00	3.10
334	346	3.056962	TCACTACTTGCTTGCTGAGAGAG	60.057	47.826	0.00	0.00	0.00	3.20
335	347	3.056962	CACTACTTGCTTGCTGAGAGAGA	60.057	47.826	0.00	0.00	0.00	3.10
397	790	3.142174	AGAGAAAAGAAAACGGCCTCTG	58.858	45.455	0.00	0.00	0.00	3.35
398	791	2.226674	GAGAAAAGAAAACGGCCTCTGG	59.773	50.000	0.00	0.00	0.00	3.86
399	792	2.158667	AGAAAAGAAAACGGCCTCTGGA	60.159	45.455	0.00	0.00	0.00	3.86
400	793	2.586648	AAAGAAAACGGCCTCTGGAT	57.413	45.000	0.00	0.00	0.00	3.41
401	794	2.586648	AAGAAAACGGCCTCTGGATT	57.413	45.000	0.00	0.00	0.00	3.01
402	795	2.586648	AGAAAACGGCCTCTGGATTT	57.413	45.000	0.00	0.00	0.00	2.17
403	796	2.876581	AGAAAACGGCCTCTGGATTTT	58.123	42.857	0.00	0.00	0.00	1.82
404	797	4.028993	AGAAAACGGCCTCTGGATTTTA	57.971	40.909	0.00	0.00	0.00	1.52
405	798	4.010349	AGAAAACGGCCTCTGGATTTTAG	58.990	43.478	0.00	0.00	0.00	1.85
406	799	2.420058	AACGGCCTCTGGATTTTAGG	57.580	50.000	0.00	0.00	0.00	2.69
407	800	0.546598	ACGGCCTCTGGATTTTAGGG	59.453	55.000	0.00	0.00	0.00	3.53
409	802	3.117657	GCCTCTGGATTTTAGGGCC	57.882	57.895	0.00	0.00	34.19	5.80
410	803	0.819666	GCCTCTGGATTTTAGGGCCG	60.820	60.000	0.00	0.00	34.19	6.13
411	804	0.179018	CCTCTGGATTTTAGGGCCGG	60.179	60.000	0.00	0.00	0.00	6.13
412	805	0.179018	CTCTGGATTTTAGGGCCGGG	60.179	60.000	2.18	0.00	0.00	5.73
413	806	1.828224	CTGGATTTTAGGGCCGGGC	60.828	63.158	22.00	22.00	0.00	6.13
500	893	4.717629	CGGTGAGCGAGCGGTGAA	62.718	66.667	0.00	0.00	42.02	3.18
501	894	2.357034	GGTGAGCGAGCGGTGAAA	60.357	61.111	0.00	0.00	0.00	2.69
512	905	0.790814	GCGGTGAAAGAAAGAGACGG	59.209	55.000	0.00	0.00	0.00	4.79
515	913	0.790814	GTGAAAGAAAGAGACGGCCG	59.209	55.000	26.86	26.86	0.00	6.13
542	940	2.010817	GCAAACGCACGGCAGAAAG	61.011	57.895	0.00	0.00	0.00	2.62
543	941	1.646540	CAAACGCACGGCAGAAAGA	59.353	52.632	0.00	0.00	0.00	2.52
544	942	0.028770	CAAACGCACGGCAGAAAGAA	59.971	50.000	0.00	0.00	0.00	2.52
545	943	0.736053	AAACGCACGGCAGAAAGAAA	59.264	45.000	0.00	0.00	0.00	2.52
581	979	4.320456	AGCCCACTCCACACTGCG	62.320	66.667	0.00	0.00	0.00	5.18
683	1140	2.082366	GTCAAAAGCGCATGCACCG	61.082	57.895	19.57	2.17	46.23	4.94
684	1141	2.050168	CAAAAGCGCATGCACCGT	60.050	55.556	19.57	3.08	46.23	4.83
685	1142	1.661197	CAAAAGCGCATGCACCGTT	60.661	52.632	19.57	9.45	46.23	4.44
686	1143	1.661197	AAAAGCGCATGCACCGTTG	60.661	52.632	19.57	0.51	46.23	4.10
709	1167	1.909781	ACTAGTCCGGCCGTTTCCA	60.910	57.895	26.12	3.85	0.00	3.53
717	1176	3.299977	GCCGTTTCCACCCCAACC	61.300	66.667	0.00	0.00	0.00	3.77
780	1250	0.889186	ATGTCAACTTCCCACCGCAC	60.889	55.000	0.00	0.00	0.00	5.34
781	1251	2.112297	TCAACTTCCCACCGCACC	59.888	61.111	0.00	0.00	0.00	5.01
783	1253	4.636435	AACTTCCCACCGCACCCG	62.636	66.667	0.00	0.00	0.00	5.28
821	1299	3.564027	CGCGAAATCCACGAGGCC	61.564	66.667	0.00	0.00	33.74	5.19
879	1368	0.604578	GTATATAACCTCCGCGGCCA	59.395	55.000	23.51	2.44	35.61	5.36
960	1475	0.539051	TGCTCCTCCTAGCTTGCTTC	59.461	55.000	0.00	0.00	43.19	3.86
987	1527	2.755655	CGGCGACAGAGGAGGAATATAT	59.244	50.000	0.00	0.00	0.00	0.86
990	1530	3.690139	GCGACAGAGGAGGAATATATCGA	59.310	47.826	0.00	0.00	0.00	3.59
991	1531	4.336993	GCGACAGAGGAGGAATATATCGAT	59.663	45.833	2.16	2.16	0.00	3.59
992	1532	5.504994	GCGACAGAGGAGGAATATATCGATC	60.505	48.000	0.00	0.00	0.00	3.69
993	1533	5.277106	CGACAGAGGAGGAATATATCGATCG	60.277	48.000	9.36	9.36	0.00	3.69
1299	6586	0.545171	AGGTCGTATGAGTCGAGGGA	59.455	55.000	0.00	0.00	37.99	4.20
1305	6592	3.697542	TCGTATGAGTCGAGGGATTGAAA	59.302	43.478	0.00	0.00	33.38	2.69
1306	6593	4.341235	TCGTATGAGTCGAGGGATTGAAAT	59.659	41.667	0.00	0.00	33.38	2.17
1307	6594	4.445718	CGTATGAGTCGAGGGATTGAAATG	59.554	45.833	0.00	0.00	0.00	2.32
1308	6595	4.760530	ATGAGTCGAGGGATTGAAATGA	57.239	40.909	0.00	0.00	0.00	2.57
1309	6596	4.551702	TGAGTCGAGGGATTGAAATGAA	57.448	40.909	0.00	0.00	0.00	2.57
1319	6606	2.679355	TTGAAATGAACAACGGCGAG	57.321	45.000	16.62	8.41	0.00	5.03
1322	6609	0.872388	AAATGAACAACGGCGAGGAC	59.128	50.000	16.62	5.01	0.00	3.85
1440	6756	8.964420	TTGATCAAATACAGAATTTTCGTTCC	57.036	30.769	5.45	0.00	35.54	3.62
1445	6761	8.792633	TCAAATACAGAATTTTCGTTCCTGATT	58.207	29.630	0.00	0.00	35.54	2.57
1643	6959	6.183360	CCAATTCCATTAGGAGTCAATGACAC	60.183	42.308	16.38	9.28	46.74	3.67
2223	7539	0.390340	CTGCTGCTCGTTCTGGCTTA	60.390	55.000	0.00	0.00	0.00	3.09

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
155	159	2.126110	GGATTTGGGGTTTGCGCG	60.126	61.111	0.00	0.00	0.00	6.86
162	166	1.152387	TGGTGGATGGGATTTGGGGT	61.152	55.000	0.00	0.00	0.00	4.95
176	180	1.062002	GTTGTCGTGCGATATTGGTGG	59.938	52.381	0.00	0.00	0.00	4.61
177	181	1.266842	CGTTGTCGTGCGATATTGGTG	60.267	52.381	0.00	0.00	0.00	4.17
178	182	0.996462	CGTTGTCGTGCGATATTGGT	59.004	50.000	0.00	0.00	0.00	3.67
217	221	1.593209	TTGCGTCGTTCACTGGACC	60.593	57.895	0.00	0.00	0.00	4.46
231	235	4.038080	GCGGTTGGAAGGGTTGCG	62.038	66.667	0.00	0.00	0.00	4.85
234	238	1.895231	GTTCGCGGTTGGAAGGGTT	60.895	57.895	6.13	0.00	0.00	4.11
251	263	2.920912	TGAACGGAGGGGAAGCGT	60.921	61.111	0.00	0.00	0.00	5.07
291	303	4.830046	TGAAGGGAATCCGTCAATCAAAAA	59.170	37.500	0.00	0.00	45.99	1.94
292	304	4.402829	TGAAGGGAATCCGTCAATCAAAA	58.597	39.130	0.00	0.00	45.99	2.44
294	306	3.712016	TGAAGGGAATCCGTCAATCAA	57.288	42.857	0.00	0.00	45.99	2.57
305	317	3.084786	GCAAGCAAGTAGTGAAGGGAAT	58.915	45.455	0.00	0.00	0.00	3.01
325	337	3.550437	ACTCTCTCTCTCTCTCTCAGC	57.450	52.381	0.00	0.00	0.00	4.26
326	338	4.626042	GCTACTCTCTCTCTCTCTCTCAG	58.374	52.174	0.00	0.00	0.00	3.35
328	340	3.643763	CGCTACTCTCTCTCTCTCTCTC	58.356	54.545	0.00	0.00	0.00	3.20
329	341	2.224066	GCGCTACTCTCTCTCTCTCTCT	60.224	54.545	0.00	0.00	0.00	3.10
330	342	2.135933	GCGCTACTCTCTCTCTCTCTC	58.864	57.143	0.00	0.00	0.00	3.20
331	343	1.202651	GGCGCTACTCTCTCTCTCTCT	60.203	57.143	7.64	0.00	0.00	3.10
332	344	1.202651	AGGCGCTACTCTCTCTCTCTC	60.203	57.143	7.64	0.00	0.00	3.20
333	345	0.837272	AGGCGCTACTCTCTCTCTCT	59.163	55.000	7.64	0.00	0.00	3.10
334	346	1.675552	AAGGCGCTACTCTCTCTCTC	58.324	55.000	7.64	0.00	0.00	3.20
335	347	2.137810	AAAGGCGCTACTCTCTCTCT	57.862	50.000	7.64	0.00	0.00	3.10
397	790	2.520982	GGCCCGGCCCTAAAATCC	60.521	66.667	18.83	0.00	44.06	3.01
438	831	1.686052	GACTAGTCCTGGCCATCTCAG	59.314	57.143	5.51	2.71	0.00	3.35
439	832	1.689575	GGACTAGTCCTGGCCATCTCA	60.690	57.143	31.12	0.00	46.16	3.27
440	833	1.044611	GGACTAGTCCTGGCCATCTC	58.955	60.000	31.12	3.83	46.16	2.75
441	834	3.232279	GGACTAGTCCTGGCCATCT	57.768	57.895	31.12	8.22	46.16	2.90
451	844	1.900545	AAAGGCAGCCGGGACTAGTC	61.901	60.000	14.87	14.87	0.00	2.59
452	845	1.489560	AAAAGGCAGCCGGGACTAGT	61.490	55.000	5.55	0.00	0.00	2.57
453	846	0.539986	TAAAAGGCAGCCGGGACTAG	59.460	55.000	5.55	0.00	0.00	2.57
454	847	0.251073	GTAAAAGGCAGCCGGGACTA	59.749	55.000	5.55	0.00	0.00	2.59
455	848	1.002502	GTAAAAGGCAGCCGGGACT	60.003	57.895	5.55	0.00	0.00	3.85
456	849	2.396157	CGTAAAAGGCAGCCGGGAC	61.396	63.158	5.55	2.23	0.00	4.46
498	891	0.949105	TGCGGCCGTCTCTTTCTTTC	60.949	55.000	28.70	5.44	0.00	2.62
499	892	0.951040	CTGCGGCCGTCTCTTTCTTT	60.951	55.000	28.70	0.00	0.00	2.52
500	893	1.374758	CTGCGGCCGTCTCTTTCTT	60.375	57.895	28.70	0.00	0.00	2.52
501	894	1.816863	TTCTGCGGCCGTCTCTTTCT	61.817	55.000	28.70	0.00	0.00	2.52
512	905	2.563427	GTTTGCTCCTTCTGCGGC	59.437	61.111	0.00	0.00	0.00	6.53
515	913	1.081840	GTGCGTTTGCTCCTTCTGC	60.082	57.895	0.00	0.00	43.34	4.26
612	1069	1.873863	GTAAAAGGGGCAGCGTGAC	59.126	57.895	0.00	0.00	0.00	3.67
655	1112	1.852067	CGCTTTTGACCGGGGAGTTG	61.852	60.000	6.32	0.00	0.00	3.16
683	1140	2.033194	GCCGGACTAGTGGTGCAAC	61.033	63.158	5.05	0.00	35.96	4.17
684	1141	2.345991	GCCGGACTAGTGGTGCAA	59.654	61.111	5.05	0.00	35.96	4.08
685	1142	3.702048	GGCCGGACTAGTGGTGCA	61.702	66.667	5.05	0.00	35.96	4.57
686	1143	4.814294	CGGCCGGACTAGTGGTGC	62.814	72.222	20.10	0.00	0.00	5.01
687	1144	2.444700	AAACGGCCGGACTAGTGGTG	62.445	60.000	31.76	0.00	0.00	4.17
688	1145	2.163601	GAAACGGCCGGACTAGTGGT	62.164	60.000	31.76	0.57	0.00	4.16
689	1146	1.447314	GAAACGGCCGGACTAGTGG	60.447	63.158	31.76	0.00	0.00	4.00
690	1147	1.447314	GGAAACGGCCGGACTAGTG	60.447	63.158	31.76	0.00	0.00	2.74
709	1167	4.233558	GGGGCAAGTGGTTGGGGT	62.234	66.667	0.00	0.00	33.87	4.95
744	1203	0.463833	CATAAACGTGGCCCCTCCTC	60.464	60.000	0.00	0.00	35.26	3.71
858	1336	1.403780	GGCCGCGGAGGTTATATACTG	60.404	57.143	33.48	0.00	43.70	2.74
859	1337	0.893447	GGCCGCGGAGGTTATATACT	59.107	55.000	33.48	0.00	43.70	2.12
879	1368	0.818296	CACGGAAGAGACGGAGGAAT	59.182	55.000	0.00	0.00	35.23	3.01
922	1411	4.269523	TGGCTATGGGGGATGCGC	62.270	66.667	0.00	0.00	0.00	6.09
960	1475	4.148825	CCTCTGTCGCCGGGGAAG	62.149	72.222	24.36	20.61	0.00	3.46
1299	6586	2.095263	CCTCGCCGTTGTTCATTTCAAT	60.095	45.455	0.00	0.00	0.00	2.57
1305	6592	0.034896	AAGTCCTCGCCGTTGTTCAT	59.965	50.000	0.00	0.00	0.00	2.57
1306	6593	0.599204	GAAGTCCTCGCCGTTGTTCA	60.599	55.000	0.00	0.00	0.00	3.18
1307	6594	0.319641	AGAAGTCCTCGCCGTTGTTC	60.320	55.000	0.00	0.00	0.00	3.18
1308	6595	0.963962	TAGAAGTCCTCGCCGTTGTT	59.036	50.000	0.00	0.00	0.00	2.83
1309	6596	0.963962	TTAGAAGTCCTCGCCGTTGT	59.036	50.000	0.00	0.00	0.00	3.32
1319	6606	7.039313	GAGATCTCTCTCCTTTTAGAAGTCC	57.961	44.000	15.80	0.00	41.86	3.85
1361	6655	0.179129	CAATCAACTCATTGGCCGCC	60.179	55.000	1.04	1.04	36.39	6.13
1403	6719	2.198827	TTGATCAATTCCAGCACGGT	57.801	45.000	3.38	0.00	35.57	4.83
1643	6959	2.417379	CCTACACTCAATGAGTCCCACG	60.417	54.545	13.72	4.54	41.37	4.94
2004	7320	2.363147	GGAGGGAGAGCGACCTGT	60.363	66.667	0.00	0.00	37.18	4.00
2223	7539	1.077663	ACCCATGGGAATGAGCAAACT	59.922	47.619	38.07	7.08	38.96	2.66

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.