Multiple sequence alignment - TraesCS4A01G249400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G249400 chr4A 100.000 5902 0 0 1 5902 560900278 560906179 0.000000e+00 10900.0
1 TraesCS4A01G249400 chr4D 91.122 2309 108 27 837 3086 39414059 39411789 0.000000e+00 3038.0
2 TraesCS4A01G249400 chr4D 97.319 858 16 5 4251 5102 39410677 39409821 0.000000e+00 1450.0
3 TraesCS4A01G249400 chr4D 98.533 409 6 0 3844 4252 39411189 39410781 0.000000e+00 723.0
4 TraesCS4A01G249400 chr4D 85.673 684 40 24 5254 5902 39409819 39409159 0.000000e+00 667.0
5 TraesCS4A01G249400 chr4D 94.602 352 17 2 3189 3538 39411789 39411438 1.450000e-150 544.0
6 TraesCS4A01G249400 chr4D 94.882 254 13 0 3592 3845 252187067 252186814 1.190000e-106 398.0
7 TraesCS4A01G249400 chr4B 86.793 2317 146 48 837 3032 57869025 57866748 0.000000e+00 2436.0
8 TraesCS4A01G249400 chr4B 90.801 1348 76 24 3844 5156 57866335 57865001 0.000000e+00 1759.0
9 TraesCS4A01G249400 chr4B 91.107 506 19 13 5374 5870 57864705 57864217 0.000000e+00 662.0
10 TraesCS4A01G249400 chr4B 90.524 401 31 5 3189 3587 57866735 57866340 1.880000e-144 523.0
11 TraesCS4A01G249400 chr4B 93.373 166 10 1 5171 5335 57864858 57864693 1.640000e-60 244.0
12 TraesCS4A01G249400 chr7A 97.967 836 17 0 1 836 118200877 118201712 0.000000e+00 1450.0
13 TraesCS4A01G249400 chr7A 95.591 499 21 1 338 836 118195304 118194807 0.000000e+00 798.0
14 TraesCS4A01G249400 chr7A 98.693 306 4 0 1 306 118195608 118195303 1.450000e-150 544.0
15 TraesCS4A01G249400 chr7A 94.862 253 13 0 3593 3845 595822715 595822967 4.290000e-106 396.0
16 TraesCS4A01G249400 chr7A 89.431 123 12 1 5132 5254 7072509 7072630 2.850000e-33 154.0
17 TraesCS4A01G249400 chr5A 98.164 817 15 0 1 817 461884928 461884112 0.000000e+00 1426.0
18 TraesCS4A01G249400 chr5A 94.671 563 30 0 274 836 1231879 1231317 0.000000e+00 874.0
19 TraesCS4A01G249400 chr5A 98.901 273 3 0 1 273 1232181 1231909 6.870000e-134 488.0
20 TraesCS4A01G249400 chr5A 91.262 103 9 0 3085 3187 476687780 476687678 2.220000e-29 141.0
21 TraesCS4A01G249400 chr5A 91.860 86 5 2 763 847 461888219 461888303 1.040000e-22 119.0
22 TraesCS4A01G249400 chr5A 87.838 74 9 0 763 836 1235497 1235570 2.930000e-13 87.9
23 TraesCS4A01G249400 chr5A 86.842 76 5 2 297 371 30810331 30810402 4.900000e-11 80.5
24 TraesCS4A01G249400 chr1A 93.916 263 16 0 3582 3844 533464745 533465007 1.190000e-106 398.0
25 TraesCS4A01G249400 chr1A 88.119 101 12 0 3085 3185 33895140 33895040 2.890000e-23 121.0
26 TraesCS4A01G249400 chr2D 94.862 253 13 0 3593 3845 491802869 491802617 4.290000e-106 396.0
27 TraesCS4A01G249400 chr3A 93.585 265 16 1 3581 3844 694985351 694985087 1.540000e-105 394.0
28 TraesCS4A01G249400 chr3A 93.077 260 18 0 3585 3844 723470436 723470695 1.200000e-101 381.0
29 TraesCS4A01G249400 chr3A 91.339 127 11 0 280 406 136604979 136604853 2.190000e-39 174.0
30 TraesCS4A01G249400 chr3B 94.488 254 12 2 3593 3845 571760461 571760209 1.990000e-104 390.0
31 TraesCS4A01G249400 chr2A 94.466 253 14 0 3593 3845 636904687 636904435 1.990000e-104 390.0
32 TraesCS4A01G249400 chr2A 91.544 272 22 1 3577 3847 36348243 36347972 2.010000e-99 374.0
33 TraesCS4A01G249400 chr2A 93.827 81 5 0 3109 3189 81091044 81091124 8.030000e-24 122.0
34 TraesCS4A01G249400 chr3D 94.444 108 6 0 3085 3192 552962395 552962288 3.660000e-37 167.0
35 TraesCS4A01G249400 chr3D 86.538 104 11 3 3085 3186 126295552 126295450 1.740000e-20 111.0
36 TraesCS4A01G249400 chr3D 86.538 104 11 3 3085 3186 126310159 126310057 1.740000e-20 111.0
37 TraesCS4A01G249400 chr7D 90.991 111 8 2 3085 3194 483284482 483284591 1.330000e-31 148.0
38 TraesCS4A01G249400 chr5D 91.262 103 8 1 3085 3187 509228226 509228125 7.980000e-29 139.0
39 TraesCS4A01G249400 chr6D 85.938 128 8 4 3075 3192 451764520 451764393 1.730000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G249400 chr4A 560900278 560906179 5901 False 10900.0 10900 100.0000 1 5902 1 chr4A.!!$F1 5901
1 TraesCS4A01G249400 chr4D 39409159 39414059 4900 True 1284.4 3038 93.4498 837 5902 5 chr4D.!!$R2 5065
2 TraesCS4A01G249400 chr4B 57864217 57869025 4808 True 1124.8 2436 90.5196 837 5870 5 chr4B.!!$R1 5033
3 TraesCS4A01G249400 chr7A 118200877 118201712 835 False 1450.0 1450 97.9670 1 836 1 chr7A.!!$F2 835
4 TraesCS4A01G249400 chr7A 118194807 118195608 801 True 671.0 798 97.1420 1 836 2 chr7A.!!$R1 835
5 TraesCS4A01G249400 chr5A 461884112 461884928 816 True 1426.0 1426 98.1640 1 817 1 chr5A.!!$R1 816
6 TraesCS4A01G249400 chr5A 1231317 1232181 864 True 681.0 874 96.7860 1 836 2 chr5A.!!$R3 835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
348 411 1.227973 GGAGGTTCCGATGGATGGC 60.228 63.158 0.00 0.0 0.00 4.40 F
1654 1742 1.160137 ACTGGAATCGAGTTTGCTGC 58.840 50.000 0.00 0.0 0.00 5.25 F
2887 3080 0.877071 CCACAGCTTTCTGCATTCGT 59.123 50.000 0.00 0.0 44.10 3.85 F
3748 4059 0.110823 CACTAAACGTGTTGAGCGCC 60.111 55.000 2.29 0.0 38.84 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1821 1922 1.092348 GGGATGGCAGTTTCGGTTAC 58.908 55.0 0.00 0.0 0.00 2.50 R
3140 3333 0.990374 AGATGGTTCAGGCAGCTTCT 59.010 50.0 0.00 0.0 0.00 2.85 R
3759 4070 0.674895 AATCCAACGACTCAGGCTGC 60.675 55.0 10.34 0.0 0.00 5.25 R
5549 6144 0.032540 GCCCGATTGGATTGGATTGC 59.967 55.0 0.00 0.0 37.49 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
308 371 3.563808 TGCAACAAGTTGTACTCACCATC 59.436 43.478 9.37 0.00 42.31 3.51
348 411 1.227973 GGAGGTTCCGATGGATGGC 60.228 63.158 0.00 0.00 0.00 4.40
375 438 5.221322 GCCATATTTCCATCTTGAAACTCCC 60.221 44.000 0.00 0.00 37.08 4.30
736 799 7.487829 GCGATTTGTTGCTGGAATTAATTAGAA 59.512 33.333 0.00 0.00 0.00 2.10
780 843 4.837896 GCTTTTGCTAAGTGTCCTTCTT 57.162 40.909 1.99 0.00 43.35 2.52
1226 1296 3.641437 TTTCCCATTGCTTTCGTTGAG 57.359 42.857 0.00 0.00 0.00 3.02
1245 1315 3.645975 CGGCCGCGTTGACTTTGT 61.646 61.111 14.67 0.00 0.00 2.83
1274 1359 1.226018 CGAATTGCGCCGAGGAAAC 60.226 57.895 4.18 0.00 32.72 2.78
1339 1424 2.202388 CTGCAGCCGAATTGCACG 60.202 61.111 0.00 0.00 45.89 5.34
1380 1465 6.102663 CCTCGATTTCCAGCCTAGTAATATG 58.897 44.000 0.00 0.00 0.00 1.78
1384 1469 6.706270 CGATTTCCAGCCTAGTAATATGTGTT 59.294 38.462 0.00 0.00 0.00 3.32
1391 1476 7.283127 CCAGCCTAGTAATATGTGTTGAATTGT 59.717 37.037 0.00 0.00 0.00 2.71
1455 1540 7.621428 TGATGATTGAACTTTCAGAGGAATC 57.379 36.000 0.00 0.00 38.61 2.52
1461 1546 5.860611 TGAACTTTCAGAGGAATCGGTTAA 58.139 37.500 0.00 0.00 31.93 2.01
1495 1580 7.095060 GGATAGATTGAATATTTGAAGCAGCGA 60.095 37.037 0.00 0.00 0.00 4.93
1591 1677 6.551227 AGCTTTAGGAAAGGGGCTAATATTTG 59.449 38.462 0.00 0.00 38.93 2.32
1604 1690 8.150296 GGGGCTAATATTTGCTTACATTTGATT 58.850 33.333 19.02 0.00 0.00 2.57
1605 1691 9.546428 GGGCTAATATTTGCTTACATTTGATTT 57.454 29.630 19.02 0.00 0.00 2.17
1654 1742 1.160137 ACTGGAATCGAGTTTGCTGC 58.840 50.000 0.00 0.00 0.00 5.25
1674 1762 2.245096 CGCTTGATTGCTAAAGTGTGC 58.755 47.619 0.00 0.00 0.00 4.57
1698 1786 9.857656 TGCCATTTTCTTAGATAGATTTCAGAT 57.142 29.630 0.00 0.00 31.54 2.90
1968 2069 2.284754 TTGCAGGTGCCATAGTTCAA 57.715 45.000 0.00 0.00 41.18 2.69
2052 2170 1.959042 CCATGCACTCCTATGTGGTC 58.041 55.000 0.00 0.00 38.31 4.02
2093 2211 4.589908 ACGGAAGTCCATTTTCTATGCTT 58.410 39.130 0.00 0.00 44.19 3.91
2215 2341 4.789784 CACCCCAAAATTACAACACTACG 58.210 43.478 0.00 0.00 0.00 3.51
2284 2432 7.340256 ACCATATTACGTTTCAAGGGTGATTA 58.660 34.615 0.00 0.00 32.48 1.75
2297 2445 7.118060 TCAAGGGTGATTACATGATCAAATCA 58.882 34.615 14.53 14.53 44.55 2.57
2335 2484 4.196193 TCGTTCAAGTGTTTCTGGTGATT 58.804 39.130 0.00 0.00 0.00 2.57
2489 2646 3.181434 TGGTGAAAAGGTACCATCAGCTT 60.181 43.478 28.89 10.04 41.80 3.74
2492 2649 5.652452 GGTGAAAAGGTACCATCAGCTTTAT 59.348 40.000 25.15 6.79 43.50 1.40
2530 2687 6.042143 AGGTTGTGTGAATGCTTTTAGTTTG 58.958 36.000 0.00 0.00 0.00 2.93
2537 2694 7.113544 GTGTGAATGCTTTTAGTTTGTAAGCTC 59.886 37.037 0.00 0.00 43.51 4.09
2753 2917 8.806146 ACAAATGCTCTTTTACATTATGGAAGT 58.194 29.630 0.00 0.00 35.49 3.01
2874 3041 6.494893 TTAATCACATGTTTAGACCACAGC 57.505 37.500 0.00 0.00 0.00 4.40
2887 3080 0.877071 CCACAGCTTTCTGCATTCGT 59.123 50.000 0.00 0.00 44.10 3.85
2906 3099 5.957842 TCGTAATGCCACATTCTTCTTTT 57.042 34.783 0.00 0.00 0.00 2.27
2960 3153 4.263905 TGGCCTCTTTGGTTTGATGTCTAT 60.264 41.667 3.32 0.00 38.35 1.98
3021 3214 3.840078 TCCTCAATCACCAATGTCTGAGA 59.160 43.478 0.00 0.00 37.60 3.27
3035 3228 7.253422 CAATGTCTGAGAAAAAGTTGAACAGT 58.747 34.615 0.00 0.00 0.00 3.55
3051 3244 4.520111 TGAACAGTTCCTCAATCACCAATG 59.480 41.667 10.93 0.00 0.00 2.82
3066 3259 2.034558 ACCAATGTCCGAGCAAAAGTTG 59.965 45.455 0.00 0.00 0.00 3.16
3067 3260 2.607771 CCAATGTCCGAGCAAAAGTTGG 60.608 50.000 0.00 0.00 0.00 3.77
3086 3279 9.702494 AAAGTTGGAAGTACTAGTAACATGTAC 57.298 33.333 3.61 0.00 37.42 2.90
3087 3280 8.647256 AGTTGGAAGTACTAGTAACATGTACT 57.353 34.615 3.61 6.02 45.82 2.73
3088 3281 8.738106 AGTTGGAAGTACTAGTAACATGTACTC 58.262 37.037 3.61 0.00 43.92 2.59
3089 3282 7.636150 TGGAAGTACTAGTAACATGTACTCC 57.364 40.000 3.61 11.99 43.92 3.85
3090 3283 6.604795 TGGAAGTACTAGTAACATGTACTCCC 59.395 42.308 3.61 8.34 43.92 4.30
3091 3284 6.832900 GGAAGTACTAGTAACATGTACTCCCT 59.167 42.308 3.61 0.00 43.92 4.20
3092 3285 7.013178 GGAAGTACTAGTAACATGTACTCCCTC 59.987 44.444 3.61 5.96 43.92 4.30
3093 3286 6.363882 AGTACTAGTAACATGTACTCCCTCC 58.636 44.000 3.61 0.00 41.86 4.30
3094 3287 4.205587 ACTAGTAACATGTACTCCCTCCG 58.794 47.826 0.00 0.00 0.00 4.63
3095 3288 3.097342 AGTAACATGTACTCCCTCCGT 57.903 47.619 0.00 0.00 0.00 4.69
3096 3289 3.438183 AGTAACATGTACTCCCTCCGTT 58.562 45.455 0.00 0.00 0.00 4.44
3097 3290 3.446516 AGTAACATGTACTCCCTCCGTTC 59.553 47.826 0.00 0.00 0.00 3.95
3098 3291 1.192428 ACATGTACTCCCTCCGTTCC 58.808 55.000 0.00 0.00 0.00 3.62
3099 3292 1.273098 ACATGTACTCCCTCCGTTCCT 60.273 52.381 0.00 0.00 0.00 3.36
3100 3293 1.831736 CATGTACTCCCTCCGTTCCTT 59.168 52.381 0.00 0.00 0.00 3.36
3101 3294 2.019807 TGTACTCCCTCCGTTCCTTT 57.980 50.000 0.00 0.00 0.00 3.11
3102 3295 2.332117 TGTACTCCCTCCGTTCCTTTT 58.668 47.619 0.00 0.00 0.00 2.27
3103 3296 2.707257 TGTACTCCCTCCGTTCCTTTTT 59.293 45.455 0.00 0.00 0.00 1.94
3104 3297 3.903090 TGTACTCCCTCCGTTCCTTTTTA 59.097 43.478 0.00 0.00 0.00 1.52
3105 3298 4.533311 TGTACTCCCTCCGTTCCTTTTTAT 59.467 41.667 0.00 0.00 0.00 1.40
3106 3299 5.721000 TGTACTCCCTCCGTTCCTTTTTATA 59.279 40.000 0.00 0.00 0.00 0.98
3107 3300 5.767277 ACTCCCTCCGTTCCTTTTTATAA 57.233 39.130 0.00 0.00 0.00 0.98
3108 3301 5.742063 ACTCCCTCCGTTCCTTTTTATAAG 58.258 41.667 0.00 0.00 0.00 1.73
3109 3302 5.486419 ACTCCCTCCGTTCCTTTTTATAAGA 59.514 40.000 0.00 0.00 0.00 2.10
3110 3303 5.737860 TCCCTCCGTTCCTTTTTATAAGAC 58.262 41.667 0.00 0.00 0.00 3.01
3111 3304 4.569564 CCCTCCGTTCCTTTTTATAAGACG 59.430 45.833 0.00 0.00 0.00 4.18
3112 3305 5.173664 CCTCCGTTCCTTTTTATAAGACGT 58.826 41.667 0.00 0.00 0.00 4.34
3113 3306 5.640783 CCTCCGTTCCTTTTTATAAGACGTT 59.359 40.000 0.00 0.00 0.00 3.99
3114 3307 6.148315 CCTCCGTTCCTTTTTATAAGACGTTT 59.852 38.462 0.00 0.00 0.00 3.60
3115 3308 7.308169 CCTCCGTTCCTTTTTATAAGACGTTTT 60.308 37.037 0.00 0.00 0.00 2.43
3116 3309 8.600449 TCCGTTCCTTTTTATAAGACGTTTTA 57.400 30.769 0.52 0.52 0.00 1.52
3117 3310 8.711457 TCCGTTCCTTTTTATAAGACGTTTTAG 58.289 33.333 4.75 0.00 0.00 1.85
3118 3311 8.711457 CCGTTCCTTTTTATAAGACGTTTTAGA 58.289 33.333 4.75 0.00 0.00 2.10
3119 3312 9.521179 CGTTCCTTTTTATAAGACGTTTTAGAC 57.479 33.333 4.75 0.00 0.00 2.59
3122 3315 8.715088 TCCTTTTTATAAGACGTTTTAGACAGC 58.285 33.333 4.75 0.00 0.00 4.40
3123 3316 8.718734 CCTTTTTATAAGACGTTTTAGACAGCT 58.281 33.333 4.75 0.00 0.00 4.24
3124 3317 9.530129 CTTTTTATAAGACGTTTTAGACAGCTG 57.470 33.333 13.48 13.48 0.00 4.24
3125 3318 8.821147 TTTTATAAGACGTTTTAGACAGCTGA 57.179 30.769 23.35 0.00 0.00 4.26
3126 3319 8.997621 TTTATAAGACGTTTTAGACAGCTGAT 57.002 30.769 23.35 11.17 0.00 2.90
3127 3320 8.997621 TTATAAGACGTTTTAGACAGCTGATT 57.002 30.769 23.35 10.36 0.00 2.57
3128 3321 7.907214 ATAAGACGTTTTAGACAGCTGATTT 57.093 32.000 23.35 7.66 0.00 2.17
3129 3322 6.619801 AAGACGTTTTAGACAGCTGATTTT 57.380 33.333 23.35 0.00 0.00 1.82
3130 3323 5.990408 AGACGTTTTAGACAGCTGATTTTG 58.010 37.500 23.35 4.64 0.00 2.44
3131 3324 5.758296 AGACGTTTTAGACAGCTGATTTTGA 59.242 36.000 23.35 0.00 0.00 2.69
3132 3325 6.260050 AGACGTTTTAGACAGCTGATTTTGAA 59.740 34.615 23.35 4.96 0.00 2.69
3133 3326 6.199393 ACGTTTTAGACAGCTGATTTTGAAC 58.801 36.000 23.35 15.30 0.00 3.18
3134 3327 6.038271 ACGTTTTAGACAGCTGATTTTGAACT 59.962 34.615 23.35 8.36 0.00 3.01
3135 3328 6.358030 CGTTTTAGACAGCTGATTTTGAACTG 59.642 38.462 23.35 9.82 0.00 3.16
3136 3329 6.942532 TTTAGACAGCTGATTTTGAACTGT 57.057 33.333 23.35 0.00 43.93 3.55
3137 3330 6.942532 TTAGACAGCTGATTTTGAACTGTT 57.057 33.333 23.35 0.00 41.45 3.16
3138 3331 5.841957 AGACAGCTGATTTTGAACTGTTT 57.158 34.783 23.35 0.00 41.45 2.83
3139 3332 6.212888 AGACAGCTGATTTTGAACTGTTTT 57.787 33.333 23.35 0.00 41.45 2.43
3140 3333 7.333528 AGACAGCTGATTTTGAACTGTTTTA 57.666 32.000 23.35 0.00 41.45 1.52
3141 3334 7.420800 AGACAGCTGATTTTGAACTGTTTTAG 58.579 34.615 23.35 0.00 41.45 1.85
3142 3335 7.283127 AGACAGCTGATTTTGAACTGTTTTAGA 59.717 33.333 23.35 0.00 41.45 2.10
3143 3336 7.771183 ACAGCTGATTTTGAACTGTTTTAGAA 58.229 30.769 23.35 0.00 38.38 2.10
3144 3337 7.917505 ACAGCTGATTTTGAACTGTTTTAGAAG 59.082 33.333 23.35 0.00 38.38 2.85
3145 3338 6.920210 AGCTGATTTTGAACTGTTTTAGAAGC 59.080 34.615 0.00 0.00 0.00 3.86
3146 3339 6.920210 GCTGATTTTGAACTGTTTTAGAAGCT 59.080 34.615 0.00 0.00 0.00 3.74
3147 3340 7.096312 GCTGATTTTGAACTGTTTTAGAAGCTG 60.096 37.037 0.00 0.00 0.00 4.24
3148 3341 6.697019 TGATTTTGAACTGTTTTAGAAGCTGC 59.303 34.615 0.00 0.00 0.00 5.25
3149 3342 4.568152 TTGAACTGTTTTAGAAGCTGCC 57.432 40.909 0.00 0.00 0.00 4.85
3150 3343 3.820557 TGAACTGTTTTAGAAGCTGCCT 58.179 40.909 0.00 0.00 0.00 4.75
3151 3344 3.565482 TGAACTGTTTTAGAAGCTGCCTG 59.435 43.478 0.00 0.00 0.00 4.85
3152 3345 3.492102 ACTGTTTTAGAAGCTGCCTGA 57.508 42.857 0.00 0.00 0.00 3.86
3153 3346 3.820557 ACTGTTTTAGAAGCTGCCTGAA 58.179 40.909 0.00 0.00 0.00 3.02
3154 3347 3.565902 ACTGTTTTAGAAGCTGCCTGAAC 59.434 43.478 0.00 0.00 0.00 3.18
3155 3348 2.884639 TGTTTTAGAAGCTGCCTGAACC 59.115 45.455 0.00 0.00 0.00 3.62
3156 3349 2.884639 GTTTTAGAAGCTGCCTGAACCA 59.115 45.455 0.00 0.00 0.00 3.67
3157 3350 3.439857 TTTAGAAGCTGCCTGAACCAT 57.560 42.857 0.00 0.00 0.00 3.55
3158 3351 2.698855 TAGAAGCTGCCTGAACCATC 57.301 50.000 0.00 0.00 0.00 3.51
3159 3352 0.990374 AGAAGCTGCCTGAACCATCT 59.010 50.000 0.00 0.00 0.00 2.90
3160 3353 2.191400 AGAAGCTGCCTGAACCATCTA 58.809 47.619 0.00 0.00 0.00 1.98
3161 3354 2.573462 AGAAGCTGCCTGAACCATCTAA 59.427 45.455 0.00 0.00 0.00 2.10
3162 3355 3.009473 AGAAGCTGCCTGAACCATCTAAA 59.991 43.478 0.00 0.00 0.00 1.85
3163 3356 3.439857 AGCTGCCTGAACCATCTAAAA 57.560 42.857 0.00 0.00 0.00 1.52
3164 3357 3.084786 AGCTGCCTGAACCATCTAAAAC 58.915 45.455 0.00 0.00 0.00 2.43
3165 3358 2.159517 GCTGCCTGAACCATCTAAAACG 60.160 50.000 0.00 0.00 0.00 3.60
3166 3359 3.074412 CTGCCTGAACCATCTAAAACGT 58.926 45.455 0.00 0.00 0.00 3.99
3167 3360 3.071479 TGCCTGAACCATCTAAAACGTC 58.929 45.455 0.00 0.00 0.00 4.34
3168 3361 3.244422 TGCCTGAACCATCTAAAACGTCT 60.244 43.478 0.00 0.00 0.00 4.18
3169 3362 3.751698 GCCTGAACCATCTAAAACGTCTT 59.248 43.478 0.00 0.00 0.00 3.01
3170 3363 4.933400 GCCTGAACCATCTAAAACGTCTTA 59.067 41.667 0.00 0.00 0.00 2.10
3171 3364 5.585047 GCCTGAACCATCTAAAACGTCTTAT 59.415 40.000 0.00 0.00 0.00 1.73
3172 3365 6.759827 GCCTGAACCATCTAAAACGTCTTATA 59.240 38.462 0.00 0.00 0.00 0.98
3173 3366 7.042658 GCCTGAACCATCTAAAACGTCTTATAG 60.043 40.741 0.00 0.00 0.00 1.31
3174 3367 8.195436 CCTGAACCATCTAAAACGTCTTATAGA 58.805 37.037 0.00 0.00 0.00 1.98
3175 3368 9.582431 CTGAACCATCTAAAACGTCTTATAGAA 57.418 33.333 0.00 0.00 0.00 2.10
3176 3369 9.582431 TGAACCATCTAAAACGTCTTATAGAAG 57.418 33.333 0.00 0.00 0.00 2.85
3177 3370 9.583765 GAACCATCTAAAACGTCTTATAGAAGT 57.416 33.333 0.00 0.00 38.56 3.01
3178 3371 8.928270 ACCATCTAAAACGTCTTATAGAAGTG 57.072 34.615 0.00 0.00 37.04 3.16
3179 3372 8.746530 ACCATCTAAAACGTCTTATAGAAGTGA 58.253 33.333 0.00 0.00 37.04 3.41
3180 3373 9.582431 CCATCTAAAACGTCTTATAGAAGTGAA 57.418 33.333 0.00 0.00 37.04 3.18
3183 3376 9.622004 TCTAAAACGTCTTATAGAAGTGAACAG 57.378 33.333 0.00 0.00 37.04 3.16
3184 3377 9.622004 CTAAAACGTCTTATAGAAGTGAACAGA 57.378 33.333 0.00 0.00 37.04 3.41
3185 3378 8.522178 AAAACGTCTTATAGAAGTGAACAGAG 57.478 34.615 0.00 0.00 37.04 3.35
3186 3379 6.197364 ACGTCTTATAGAAGTGAACAGAGG 57.803 41.667 0.00 0.00 35.66 3.69
3187 3380 5.125739 ACGTCTTATAGAAGTGAACAGAGGG 59.874 44.000 0.00 0.00 35.66 4.30
3188 3381 5.357314 CGTCTTATAGAAGTGAACAGAGGGA 59.643 44.000 0.00 0.00 34.03 4.20
3310 3504 8.861101 CATTTTACTAGTCTACTTGTGTGTAGC 58.139 37.037 0.00 0.00 39.61 3.58
3335 3529 7.055667 TGCTATAGGTTTTCATAGTCCTCAG 57.944 40.000 1.04 0.00 0.00 3.35
3438 3633 0.649475 GCTGCTTACATGAGTCAGCG 59.351 55.000 0.00 0.00 45.71 5.18
3440 3635 0.740868 TGCTTACATGAGTCAGCGCC 60.741 55.000 2.29 0.00 45.71 6.53
3458 3653 6.027749 CAGCGCCGAATAAAGAAACTAATTT 58.972 36.000 2.29 0.00 0.00 1.82
3538 3734 9.784531 ACTATTCCTGGTACAAAATCATATCTG 57.215 33.333 0.00 0.00 38.70 2.90
3611 3922 6.456447 TTTCACTAGTAATTGTGTACGTGC 57.544 37.500 0.00 0.00 35.82 5.34
3612 3923 5.123805 TCACTAGTAATTGTGTACGTGCA 57.876 39.130 0.82 0.82 35.82 4.57
3614 3925 6.160684 TCACTAGTAATTGTGTACGTGCAAT 58.839 36.000 8.25 8.34 36.95 3.56
3616 3927 4.078363 AGTAATTGTGTACGTGCAATGC 57.922 40.909 8.25 0.00 35.72 3.56
3617 3928 3.500299 AGTAATTGTGTACGTGCAATGCA 59.500 39.130 8.25 2.72 35.72 3.96
3630 3941 4.550577 TGCAATGCACGTTGATATTAGG 57.449 40.909 2.72 0.00 31.71 2.69
3631 3942 3.944650 TGCAATGCACGTTGATATTAGGT 59.055 39.130 2.72 0.00 31.71 3.08
3632 3943 5.119694 TGCAATGCACGTTGATATTAGGTA 58.880 37.500 2.72 0.00 31.71 3.08
3633 3944 5.586643 TGCAATGCACGTTGATATTAGGTAA 59.413 36.000 2.72 0.00 31.71 2.85
3635 3946 7.442666 TGCAATGCACGTTGATATTAGGTAATA 59.557 33.333 2.72 0.00 31.71 0.98
3636 3947 8.450964 GCAATGCACGTTGATATTAGGTAATAT 58.549 33.333 0.00 2.47 40.53 1.28
3732 4043 8.752005 ATTTGGTATGATATTAACTGCACACT 57.248 30.769 0.00 0.00 0.00 3.55
3733 4044 9.845740 ATTTGGTATGATATTAACTGCACACTA 57.154 29.630 0.00 0.00 0.00 2.74
3734 4045 9.674068 TTTGGTATGATATTAACTGCACACTAA 57.326 29.630 0.00 0.00 0.00 2.24
3735 4046 9.674068 TTGGTATGATATTAACTGCACACTAAA 57.326 29.630 0.00 0.00 0.00 1.85
3736 4047 9.104965 TGGTATGATATTAACTGCACACTAAAC 57.895 33.333 0.00 0.00 0.00 2.01
3737 4048 8.273557 GGTATGATATTAACTGCACACTAAACG 58.726 37.037 0.00 0.00 0.00 3.60
3738 4049 7.843490 ATGATATTAACTGCACACTAAACGT 57.157 32.000 0.00 0.00 0.00 3.99
3747 4058 3.345087 CACTAAACGTGTTGAGCGC 57.655 52.632 0.00 0.00 38.84 5.92
3748 4059 0.110823 CACTAAACGTGTTGAGCGCC 60.111 55.000 2.29 0.00 38.84 6.53
3749 4060 1.226030 ACTAAACGTGTTGAGCGCCC 61.226 55.000 2.29 0.00 0.00 6.13
3750 4061 1.225376 CTAAACGTGTTGAGCGCCCA 61.225 55.000 2.29 0.00 0.00 5.36
3751 4062 1.500512 TAAACGTGTTGAGCGCCCAC 61.501 55.000 2.29 5.36 0.00 4.61
3754 4065 2.672996 GTGTTGAGCGCCCACCAT 60.673 61.111 2.29 0.00 0.00 3.55
3755 4066 2.115052 TGTTGAGCGCCCACCATT 59.885 55.556 2.29 0.00 0.00 3.16
3756 4067 2.267351 TGTTGAGCGCCCACCATTG 61.267 57.895 2.29 0.00 0.00 2.82
3757 4068 2.676121 TTGAGCGCCCACCATTGG 60.676 61.111 2.29 0.00 43.50 3.16
3766 4077 3.599584 CACCATTGGAGCAGCCTG 58.400 61.111 10.37 0.00 37.63 4.85
3767 4078 1.001764 CACCATTGGAGCAGCCTGA 60.002 57.895 10.37 0.00 37.63 3.86
3768 4079 1.030488 CACCATTGGAGCAGCCTGAG 61.030 60.000 10.37 0.00 37.63 3.35
3769 4080 1.302285 CCATTGGAGCAGCCTGAGT 59.698 57.895 0.00 0.00 37.63 3.41
3770 4081 0.747283 CCATTGGAGCAGCCTGAGTC 60.747 60.000 0.00 0.00 37.63 3.36
3771 4082 1.088340 CATTGGAGCAGCCTGAGTCG 61.088 60.000 0.00 0.00 37.63 4.18
3772 4083 1.548357 ATTGGAGCAGCCTGAGTCGT 61.548 55.000 0.00 0.00 37.63 4.34
3773 4084 1.758440 TTGGAGCAGCCTGAGTCGTT 61.758 55.000 0.00 0.00 37.63 3.85
3774 4085 1.739562 GGAGCAGCCTGAGTCGTTG 60.740 63.158 0.00 0.00 0.00 4.10
3775 4086 1.739562 GAGCAGCCTGAGTCGTTGG 60.740 63.158 0.00 0.00 0.00 3.77
3776 4087 2.159819 GAGCAGCCTGAGTCGTTGGA 62.160 60.000 0.00 0.00 0.00 3.53
3777 4088 1.078848 GCAGCCTGAGTCGTTGGAT 60.079 57.895 0.00 0.00 0.00 3.41
3778 4089 0.674895 GCAGCCTGAGTCGTTGGATT 60.675 55.000 0.00 0.00 0.00 3.01
3779 4090 1.081892 CAGCCTGAGTCGTTGGATTG 58.918 55.000 0.00 0.00 0.00 2.67
3780 4091 0.976641 AGCCTGAGTCGTTGGATTGA 59.023 50.000 1.44 0.00 0.00 2.57
3781 4092 1.079503 GCCTGAGTCGTTGGATTGAC 58.920 55.000 1.44 0.00 35.33 3.18
3782 4093 1.726853 CCTGAGTCGTTGGATTGACC 58.273 55.000 0.00 0.00 35.71 4.02
3783 4094 1.276421 CCTGAGTCGTTGGATTGACCT 59.724 52.381 0.00 0.00 39.86 3.85
3784 4095 2.341257 CTGAGTCGTTGGATTGACCTG 58.659 52.381 0.00 0.00 39.86 4.00
3785 4096 1.967779 TGAGTCGTTGGATTGACCTGA 59.032 47.619 0.00 0.00 39.86 3.86
3786 4097 2.567169 TGAGTCGTTGGATTGACCTGAT 59.433 45.455 0.00 0.00 39.86 2.90
3787 4098 3.007940 TGAGTCGTTGGATTGACCTGATT 59.992 43.478 0.00 0.00 39.86 2.57
3788 4099 4.003648 GAGTCGTTGGATTGACCTGATTT 58.996 43.478 0.00 0.00 39.86 2.17
3789 4100 3.753272 AGTCGTTGGATTGACCTGATTTG 59.247 43.478 0.00 0.00 39.86 2.32
3790 4101 3.751175 GTCGTTGGATTGACCTGATTTGA 59.249 43.478 0.00 0.00 39.86 2.69
3791 4102 4.396166 GTCGTTGGATTGACCTGATTTGAT 59.604 41.667 0.00 0.00 39.86 2.57
3792 4103 4.395854 TCGTTGGATTGACCTGATTTGATG 59.604 41.667 0.00 0.00 39.86 3.07
3793 4104 4.439153 CGTTGGATTGACCTGATTTGATGG 60.439 45.833 0.00 0.00 39.86 3.51
3794 4105 3.025978 TGGATTGACCTGATTTGATGGC 58.974 45.455 0.00 0.00 39.86 4.40
3795 4106 2.363359 GGATTGACCTGATTTGATGGCC 59.637 50.000 0.00 0.00 35.41 5.36
3796 4107 2.601240 TTGACCTGATTTGATGGCCA 57.399 45.000 8.56 8.56 0.00 5.36
3797 4108 2.133281 TGACCTGATTTGATGGCCAG 57.867 50.000 13.05 0.00 0.00 4.85
3799 4110 1.002069 ACCTGATTTGATGGCCAGGA 58.998 50.000 13.05 0.00 46.84 3.86
3800 4111 1.572415 ACCTGATTTGATGGCCAGGAT 59.428 47.619 13.05 1.71 46.84 3.24
3801 4112 2.023695 ACCTGATTTGATGGCCAGGATT 60.024 45.455 13.05 0.00 46.84 3.01
3802 4113 3.036091 CCTGATTTGATGGCCAGGATTT 58.964 45.455 13.05 0.00 46.84 2.17
3803 4114 3.181469 CCTGATTTGATGGCCAGGATTTG 60.181 47.826 13.05 0.00 46.84 2.32
3804 4115 3.443052 TGATTTGATGGCCAGGATTTGT 58.557 40.909 13.05 0.00 0.00 2.83
3805 4116 3.839490 TGATTTGATGGCCAGGATTTGTT 59.161 39.130 13.05 0.00 0.00 2.83
3806 4117 3.681593 TTTGATGGCCAGGATTTGTTG 57.318 42.857 13.05 0.00 0.00 3.33
3807 4118 1.559368 TGATGGCCAGGATTTGTTGG 58.441 50.000 13.05 0.00 0.00 3.77
3808 4119 1.076841 TGATGGCCAGGATTTGTTGGA 59.923 47.619 13.05 0.00 0.00 3.53
3809 4120 2.292389 TGATGGCCAGGATTTGTTGGAT 60.292 45.455 13.05 0.00 0.00 3.41
3810 4121 1.851304 TGGCCAGGATTTGTTGGATC 58.149 50.000 0.00 0.00 0.00 3.36
3811 4122 1.358787 TGGCCAGGATTTGTTGGATCT 59.641 47.619 0.00 0.00 0.00 2.75
3812 4123 1.753073 GGCCAGGATTTGTTGGATCTG 59.247 52.381 0.00 0.00 0.00 2.90
3813 4124 1.135721 GCCAGGATTTGTTGGATCTGC 59.864 52.381 0.00 0.00 0.00 4.26
3814 4125 1.753073 CCAGGATTTGTTGGATCTGCC 59.247 52.381 0.00 0.00 37.10 4.85
3815 4126 2.622452 CCAGGATTTGTTGGATCTGCCT 60.622 50.000 0.00 0.00 37.63 4.75
3816 4127 2.686915 CAGGATTTGTTGGATCTGCCTC 59.313 50.000 0.00 0.00 37.63 4.70
3817 4128 2.579860 AGGATTTGTTGGATCTGCCTCT 59.420 45.455 0.00 0.00 37.63 3.69
3818 4129 3.011032 AGGATTTGTTGGATCTGCCTCTT 59.989 43.478 0.00 0.00 37.63 2.85
3819 4130 3.766051 GGATTTGTTGGATCTGCCTCTTT 59.234 43.478 0.00 0.00 37.63 2.52
3820 4131 4.381292 GGATTTGTTGGATCTGCCTCTTTG 60.381 45.833 0.00 0.00 37.63 2.77
3821 4132 2.205022 TGTTGGATCTGCCTCTTTGG 57.795 50.000 0.00 0.00 37.63 3.28
3822 4133 1.704628 TGTTGGATCTGCCTCTTTGGA 59.295 47.619 0.00 0.00 38.35 3.53
3823 4134 2.309755 TGTTGGATCTGCCTCTTTGGAT 59.690 45.455 0.00 0.00 38.35 3.41
3824 4135 2.948315 GTTGGATCTGCCTCTTTGGATC 59.052 50.000 0.00 0.00 38.35 3.36
3825 4136 2.485659 TGGATCTGCCTCTTTGGATCT 58.514 47.619 0.00 0.00 38.35 2.75
3826 4137 2.848694 TGGATCTGCCTCTTTGGATCTT 59.151 45.455 0.00 0.00 38.35 2.40
3827 4138 3.267812 TGGATCTGCCTCTTTGGATCTTT 59.732 43.478 0.00 0.00 38.35 2.52
3828 4139 4.264083 TGGATCTGCCTCTTTGGATCTTTT 60.264 41.667 0.00 0.00 38.35 2.27
3829 4140 4.708909 GGATCTGCCTCTTTGGATCTTTTT 59.291 41.667 0.00 0.00 38.35 1.94
3830 4141 5.888161 GGATCTGCCTCTTTGGATCTTTTTA 59.112 40.000 0.00 0.00 38.35 1.52
3831 4142 6.548993 GGATCTGCCTCTTTGGATCTTTTTAT 59.451 38.462 0.00 0.00 38.35 1.40
3832 4143 7.721399 GGATCTGCCTCTTTGGATCTTTTTATA 59.279 37.037 0.00 0.00 38.35 0.98
3833 4144 9.294614 GATCTGCCTCTTTGGATCTTTTTATAT 57.705 33.333 0.00 0.00 38.35 0.86
3834 4145 9.652114 ATCTGCCTCTTTGGATCTTTTTATATT 57.348 29.630 0.00 0.00 38.35 1.28
3835 4146 8.906867 TCTGCCTCTTTGGATCTTTTTATATTG 58.093 33.333 0.00 0.00 38.35 1.90
3836 4147 8.010733 TGCCTCTTTGGATCTTTTTATATTGG 57.989 34.615 0.00 0.00 38.35 3.16
3837 4148 7.619302 TGCCTCTTTGGATCTTTTTATATTGGT 59.381 33.333 0.00 0.00 38.35 3.67
3838 4149 9.131791 GCCTCTTTGGATCTTTTTATATTGGTA 57.868 33.333 0.00 0.00 38.35 3.25
4351 4783 3.926058 ATTGCCTAACCGATTACCTGT 57.074 42.857 0.00 0.00 0.00 4.00
4803 5257 8.722480 ACTTTCTTGATCTTTTTCCCTTTTTG 57.278 30.769 0.00 0.00 0.00 2.44
4826 5283 5.070685 GTGTGTGGGGATTCTACTTTCTTT 58.929 41.667 0.00 0.00 0.00 2.52
5126 5584 0.941542 GTGTTGGCTGCTTGTCGTAA 59.058 50.000 0.00 0.00 0.00 3.18
5133 5591 2.548480 GGCTGCTTGTCGTAACTCTTTT 59.452 45.455 0.00 0.00 0.00 2.27
5151 5630 3.569194 TTTCTGGTGCCTTCTTGTGTA 57.431 42.857 0.00 0.00 0.00 2.90
5182 5766 3.758554 GCCATCTTTTGTACCTGATGTGT 59.241 43.478 0.00 0.00 35.76 3.72
5224 5809 0.820074 TGAAAATGGTTCACGCCGGT 60.820 50.000 1.90 0.00 0.00 5.28
5232 5817 3.887335 TTCACGCCGGTGTAAGCCC 62.887 63.158 22.46 0.00 44.68 5.19
5291 5885 4.987285 CCAGATGTATGCTAGTGTCATCAC 59.013 45.833 15.70 0.00 44.15 3.06
5350 5945 4.266714 ACAGATCAACATCATCACATGCA 58.733 39.130 0.00 0.00 0.00 3.96
5352 5947 5.215160 CAGATCAACATCATCACATGCATG 58.785 41.667 25.09 25.09 0.00 4.06
5354 5949 5.359860 AGATCAACATCATCACATGCATGTT 59.640 36.000 29.48 14.02 39.39 2.71
5391 5986 9.477484 AACATATCTTGACTAACATATCGTTCC 57.523 33.333 0.00 0.00 39.14 3.62
5392 5987 8.861086 ACATATCTTGACTAACATATCGTTCCT 58.139 33.333 0.00 0.00 39.14 3.36
5393 5988 9.133627 CATATCTTGACTAACATATCGTTCCTG 57.866 37.037 0.00 0.00 39.14 3.86
5394 5989 6.769134 TCTTGACTAACATATCGTTCCTGA 57.231 37.500 0.00 0.00 39.14 3.86
5395 5990 7.348080 TCTTGACTAACATATCGTTCCTGAT 57.652 36.000 0.00 0.00 39.14 2.90
5406 6001 1.664151 CGTTCCTGATTTACTTCGGCC 59.336 52.381 0.00 0.00 0.00 6.13
5421 6016 1.168407 CGGCCATGGTAAGATGCAGG 61.168 60.000 14.67 0.00 0.00 4.85
5482 6077 6.667414 TCAATGGATGGCTACAAAATAGGTTT 59.333 34.615 0.00 0.00 0.00 3.27
5483 6078 7.836685 TCAATGGATGGCTACAAAATAGGTTTA 59.163 33.333 0.00 0.00 0.00 2.01
5503 6098 7.224753 AGGTTTATACAGACATACAAATCGCAG 59.775 37.037 0.00 0.00 0.00 5.18
5525 6120 1.162698 GGTTTAGCCCTTCACGAACC 58.837 55.000 0.00 0.00 0.00 3.62
5530 6125 2.604174 GCCCTTCACGAACCACACG 61.604 63.158 0.00 0.00 0.00 4.49
5533 6128 0.249322 CCTTCACGAACCACACGAGT 60.249 55.000 0.00 0.00 34.70 4.18
5534 6129 1.001048 CCTTCACGAACCACACGAGTA 60.001 52.381 0.00 0.00 34.70 2.59
5535 6130 2.544277 CCTTCACGAACCACACGAGTAA 60.544 50.000 0.00 0.00 34.70 2.24
5536 6131 2.124011 TCACGAACCACACGAGTAAC 57.876 50.000 0.00 0.00 34.70 2.50
5549 6144 2.240040 CGAGTAACGTCGAGAGGTTTG 58.760 52.381 14.97 2.35 42.85 2.93
5550 6145 1.984297 GAGTAACGTCGAGAGGTTTGC 59.016 52.381 14.97 9.56 39.69 3.68
5552 6147 2.129607 GTAACGTCGAGAGGTTTGCAA 58.870 47.619 14.97 0.00 39.69 4.08
5553 6148 1.878953 AACGTCGAGAGGTTTGCAAT 58.121 45.000 0.00 0.00 36.14 3.56
5554 6149 1.429463 ACGTCGAGAGGTTTGCAATC 58.571 50.000 0.00 0.00 0.00 2.67
5858 6478 4.056125 CAGCAGCAGGGACGACGA 62.056 66.667 0.00 0.00 0.00 4.20
5859 6479 4.057428 AGCAGCAGGGACGACGAC 62.057 66.667 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 4.816385 GGAACGATCAGGATTTGCAAGATA 59.184 41.667 0.00 0.00 0.00 1.98
228 229 2.168326 TTCTTCAGAAGCACGCATCA 57.832 45.000 5.15 0.00 0.00 3.07
308 371 0.544357 TACCCACACCTCCTCCACTG 60.544 60.000 0.00 0.00 0.00 3.66
348 411 5.361857 AGTTTCAAGATGGAAATATGGCAGG 59.638 40.000 0.00 0.00 38.86 4.85
375 438 0.163788 AGCGCAACAAGAAACGATCG 59.836 50.000 14.88 14.88 0.00 3.69
736 799 6.018016 AGCTTTTCAACGCAAGCAATTAATTT 60.018 30.769 6.93 0.00 46.70 1.82
767 830 3.510360 CCCTCTCGAAAGAAGGACACTTA 59.490 47.826 4.79 0.00 41.32 2.24
777 840 1.166129 CGTGAGACCCTCTCGAAAGA 58.834 55.000 11.53 0.00 46.25 2.52
969 1032 2.672295 GACGGTTGGTATGGGCCA 59.328 61.111 9.61 9.61 36.62 5.36
977 1040 3.396570 GGGGATCGGACGGTTGGT 61.397 66.667 0.00 0.00 0.00 3.67
1234 1304 1.594518 CCAACGCAGACAAAGTCAACG 60.595 52.381 9.32 9.32 38.45 4.10
1245 1315 2.976840 GCAATTCGCCCAACGCAGA 61.977 57.895 0.00 0.00 43.23 4.26
1274 1359 6.352682 TCGAAATCCACCAATAAACGTATG 57.647 37.500 0.00 0.00 0.00 2.39
1380 1465 7.851822 ACATTTCGACAATACAATTCAACAC 57.148 32.000 0.00 0.00 0.00 3.32
1413 1498 5.879237 TCATCAACAGAACAACAACAGAAC 58.121 37.500 0.00 0.00 0.00 3.01
1415 1500 6.318396 TCAATCATCAACAGAACAACAACAGA 59.682 34.615 0.00 0.00 0.00 3.41
1416 1501 6.497437 TCAATCATCAACAGAACAACAACAG 58.503 36.000 0.00 0.00 0.00 3.16
1417 1502 6.448207 TCAATCATCAACAGAACAACAACA 57.552 33.333 0.00 0.00 0.00 3.33
1418 1503 6.974622 AGTTCAATCATCAACAGAACAACAAC 59.025 34.615 0.00 0.00 40.63 3.32
1419 1504 7.099266 AGTTCAATCATCAACAGAACAACAA 57.901 32.000 0.00 0.00 40.63 2.83
1420 1505 6.698008 AGTTCAATCATCAACAGAACAACA 57.302 33.333 0.00 0.00 40.63 3.33
1421 1506 7.701924 TGAAAGTTCAATCATCAACAGAACAAC 59.298 33.333 0.00 0.00 40.63 3.32
1422 1507 7.770201 TGAAAGTTCAATCATCAACAGAACAA 58.230 30.769 0.00 0.00 40.63 2.83
1423 1508 7.282901 TCTGAAAGTTCAATCATCAACAGAACA 59.717 33.333 0.00 0.00 40.63 3.18
1455 1540 6.802608 TCAATCTATCCACAGTACTTAACCG 58.197 40.000 0.00 0.00 0.00 4.44
1620 1706 5.336770 CGATTCCAGTAAGATAGCATAGCCA 60.337 44.000 0.00 0.00 0.00 4.75
1627 1715 5.050702 GCAAACTCGATTCCAGTAAGATAGC 60.051 44.000 0.00 0.00 0.00 2.97
1630 1718 4.872691 CAGCAAACTCGATTCCAGTAAGAT 59.127 41.667 0.00 0.00 0.00 2.40
1635 1723 1.160137 GCAGCAAACTCGATTCCAGT 58.840 50.000 0.00 0.00 0.00 4.00
1654 1742 2.245096 GCACACTTTAGCAATCAAGCG 58.755 47.619 0.00 0.00 40.15 4.68
1698 1786 6.889301 AGCACATGAAAGAAAGAAGAATCA 57.111 33.333 0.00 0.00 0.00 2.57
1810 1911 5.178809 GCAGTTTCGGTTACATAAGACAACT 59.821 40.000 0.00 0.00 0.00 3.16
1820 1921 1.612199 GGGATGGCAGTTTCGGTTACA 60.612 52.381 0.00 0.00 0.00 2.41
1821 1922 1.092348 GGGATGGCAGTTTCGGTTAC 58.908 55.000 0.00 0.00 0.00 2.50
1892 1993 6.910536 ATAAGGAATAACGTCAAGCAGAAG 57.089 37.500 0.00 0.00 0.00 2.85
1968 2069 4.383770 CCATCAAGAACCGTACCCTAACAT 60.384 45.833 0.00 0.00 0.00 2.71
2013 2131 6.498304 CATGGCCTACAAACATCATTAAGAC 58.502 40.000 3.32 0.00 0.00 3.01
2052 2170 3.363426 CCGTTTTTGTGCAATTCGGTATG 59.637 43.478 0.00 0.00 33.20 2.39
2132 2255 2.094390 TCAATGCATCAAGGCTCAAAGC 60.094 45.455 0.00 0.00 41.46 3.51
2192 2318 3.744238 AGTGTTGTAATTTTGGGGTGC 57.256 42.857 0.00 0.00 0.00 5.01
2297 2445 9.825972 CACTTGAACGATGATTTAACAAATAGT 57.174 29.630 0.00 0.00 0.00 2.12
2300 2448 9.528018 AAACACTTGAACGATGATTTAACAAAT 57.472 25.926 0.00 0.00 0.00 2.32
2335 2484 8.415950 AACCAATTACAAATGACCATGAACTA 57.584 30.769 0.00 0.00 0.00 2.24
2489 2646 9.214957 CACACAACCTTGTTGTAGAGATTATAA 57.785 33.333 11.86 0.00 39.91 0.98
2492 2649 6.822442 TCACACAACCTTGTTGTAGAGATTA 58.178 36.000 11.86 0.00 39.91 1.75
2530 2687 3.186119 GCAGACATGAGACAGAGCTTAC 58.814 50.000 0.00 0.00 0.00 2.34
2537 2694 3.192212 TGTACTCTGCAGACATGAGACAG 59.808 47.826 13.74 1.98 0.00 3.51
2753 2917 7.280876 GTGTGATGACTAATCAAATCCTGCTTA 59.719 37.037 0.00 0.00 46.90 3.09
2792 2956 5.747248 GCAGAAAGCTGGAGTATATTCCCAT 60.747 44.000 11.48 0.00 42.53 4.00
2793 2957 4.444876 GCAGAAAGCTGGAGTATATTCCCA 60.445 45.833 11.48 1.81 42.53 4.37
2794 2958 4.068599 GCAGAAAGCTGGAGTATATTCCC 58.931 47.826 11.48 0.00 42.53 3.97
2906 3099 8.871629 TTAGGTAAAATTCTAGATTTGTGCCA 57.128 30.769 20.35 8.88 0.00 4.92
2935 3128 2.365293 ACATCAAACCAAAGAGGCCAAC 59.635 45.455 5.01 0.00 43.14 3.77
2937 3130 2.158475 AGACATCAAACCAAAGAGGCCA 60.158 45.455 5.01 0.00 43.14 5.36
2938 3131 2.519013 AGACATCAAACCAAAGAGGCC 58.481 47.619 0.00 0.00 43.14 5.19
2960 3153 6.542821 ACAAAATTGTCTCAGATTGGTAGGA 58.457 36.000 0.00 0.00 36.50 2.94
3021 3214 7.035612 GTGATTGAGGAACTGTTCAACTTTTT 58.964 34.615 21.01 0.91 41.55 1.94
3035 3228 2.304470 TCGGACATTGGTGATTGAGGAA 59.696 45.455 0.00 0.00 0.00 3.36
3051 3244 1.947456 ACTTCCAACTTTTGCTCGGAC 59.053 47.619 0.00 0.00 0.00 4.79
3067 3260 7.013178 GGAGGGAGTACATGTTACTAGTACTTC 59.987 44.444 16.72 15.24 46.01 3.01
3086 3279 5.816258 GTCTTATAAAAAGGAACGGAGGGAG 59.184 44.000 0.00 0.00 0.00 4.30
3087 3280 5.625197 CGTCTTATAAAAAGGAACGGAGGGA 60.625 44.000 0.00 0.00 0.00 4.20
3088 3281 4.569564 CGTCTTATAAAAAGGAACGGAGGG 59.430 45.833 0.00 0.00 0.00 4.30
3089 3282 5.173664 ACGTCTTATAAAAAGGAACGGAGG 58.826 41.667 0.00 0.00 0.00 4.30
3090 3283 6.716898 AACGTCTTATAAAAAGGAACGGAG 57.283 37.500 0.00 0.00 0.00 4.63
3091 3284 7.495135 AAAACGTCTTATAAAAAGGAACGGA 57.505 32.000 0.00 0.00 0.00 4.69
3092 3285 8.711457 TCTAAAACGTCTTATAAAAAGGAACGG 58.289 33.333 0.00 0.00 0.00 4.44
3093 3286 9.521179 GTCTAAAACGTCTTATAAAAAGGAACG 57.479 33.333 0.00 0.00 0.00 3.95
3096 3289 8.715088 GCTGTCTAAAACGTCTTATAAAAAGGA 58.285 33.333 0.00 0.00 0.00 3.36
3097 3290 8.718734 AGCTGTCTAAAACGTCTTATAAAAAGG 58.281 33.333 0.00 0.00 0.00 3.11
3098 3291 9.530129 CAGCTGTCTAAAACGTCTTATAAAAAG 57.470 33.333 5.25 0.00 0.00 2.27
3099 3292 9.263538 TCAGCTGTCTAAAACGTCTTATAAAAA 57.736 29.630 14.67 0.00 0.00 1.94
3100 3293 8.821147 TCAGCTGTCTAAAACGTCTTATAAAA 57.179 30.769 14.67 0.00 0.00 1.52
3101 3294 8.997621 ATCAGCTGTCTAAAACGTCTTATAAA 57.002 30.769 14.67 0.00 0.00 1.40
3102 3295 8.997621 AATCAGCTGTCTAAAACGTCTTATAA 57.002 30.769 14.67 0.00 0.00 0.98
3103 3296 8.997621 AAATCAGCTGTCTAAAACGTCTTATA 57.002 30.769 14.67 0.00 0.00 0.98
3104 3297 7.907214 AAATCAGCTGTCTAAAACGTCTTAT 57.093 32.000 14.67 0.00 0.00 1.73
3105 3298 7.439955 TCAAAATCAGCTGTCTAAAACGTCTTA 59.560 33.333 14.67 0.00 0.00 2.10
3106 3299 6.260050 TCAAAATCAGCTGTCTAAAACGTCTT 59.740 34.615 14.67 0.00 0.00 3.01
3107 3300 5.758296 TCAAAATCAGCTGTCTAAAACGTCT 59.242 36.000 14.67 0.00 0.00 4.18
3108 3301 5.985781 TCAAAATCAGCTGTCTAAAACGTC 58.014 37.500 14.67 0.00 0.00 4.34
3109 3302 6.038271 AGTTCAAAATCAGCTGTCTAAAACGT 59.962 34.615 14.67 0.00 0.00 3.99
3110 3303 6.358030 CAGTTCAAAATCAGCTGTCTAAAACG 59.642 38.462 14.67 6.04 0.00 3.60
3111 3304 7.196331 ACAGTTCAAAATCAGCTGTCTAAAAC 58.804 34.615 14.67 11.99 35.78 2.43
3112 3305 7.333528 ACAGTTCAAAATCAGCTGTCTAAAA 57.666 32.000 14.67 0.05 35.78 1.52
3113 3306 6.942532 ACAGTTCAAAATCAGCTGTCTAAA 57.057 33.333 14.67 0.00 35.78 1.85
3114 3307 6.942532 AACAGTTCAAAATCAGCTGTCTAA 57.057 33.333 14.67 0.00 39.19 2.10
3115 3308 6.942532 AAACAGTTCAAAATCAGCTGTCTA 57.057 33.333 14.67 0.00 39.19 2.59
3116 3309 5.841957 AAACAGTTCAAAATCAGCTGTCT 57.158 34.783 14.67 0.00 39.19 3.41
3117 3310 7.417612 TCTAAAACAGTTCAAAATCAGCTGTC 58.582 34.615 14.67 0.00 39.19 3.51
3118 3311 7.333528 TCTAAAACAGTTCAAAATCAGCTGT 57.666 32.000 14.67 0.00 41.51 4.40
3119 3312 7.096312 GCTTCTAAAACAGTTCAAAATCAGCTG 60.096 37.037 7.63 7.63 0.00 4.24
3120 3313 6.920210 GCTTCTAAAACAGTTCAAAATCAGCT 59.080 34.615 0.00 0.00 0.00 4.24
3121 3314 6.920210 AGCTTCTAAAACAGTTCAAAATCAGC 59.080 34.615 0.00 0.00 0.00 4.26
3122 3315 7.096312 GCAGCTTCTAAAACAGTTCAAAATCAG 60.096 37.037 0.00 0.00 0.00 2.90
3123 3316 6.697019 GCAGCTTCTAAAACAGTTCAAAATCA 59.303 34.615 0.00 0.00 0.00 2.57
3124 3317 6.144563 GGCAGCTTCTAAAACAGTTCAAAATC 59.855 38.462 0.00 0.00 0.00 2.17
3125 3318 5.985530 GGCAGCTTCTAAAACAGTTCAAAAT 59.014 36.000 0.00 0.00 0.00 1.82
3126 3319 5.127031 AGGCAGCTTCTAAAACAGTTCAAAA 59.873 36.000 0.00 0.00 0.00 2.44
3127 3320 4.644685 AGGCAGCTTCTAAAACAGTTCAAA 59.355 37.500 0.00 0.00 0.00 2.69
3128 3321 4.036734 CAGGCAGCTTCTAAAACAGTTCAA 59.963 41.667 0.00 0.00 0.00 2.69
3129 3322 3.565482 CAGGCAGCTTCTAAAACAGTTCA 59.435 43.478 0.00 0.00 0.00 3.18
3130 3323 3.815401 TCAGGCAGCTTCTAAAACAGTTC 59.185 43.478 0.00 0.00 0.00 3.01
3131 3324 3.820557 TCAGGCAGCTTCTAAAACAGTT 58.179 40.909 0.00 0.00 0.00 3.16
3132 3325 3.492102 TCAGGCAGCTTCTAAAACAGT 57.508 42.857 0.00 0.00 0.00 3.55
3133 3326 3.057946 GGTTCAGGCAGCTTCTAAAACAG 60.058 47.826 0.00 0.00 0.00 3.16
3134 3327 2.884639 GGTTCAGGCAGCTTCTAAAACA 59.115 45.455 0.00 0.00 0.00 2.83
3135 3328 2.884639 TGGTTCAGGCAGCTTCTAAAAC 59.115 45.455 0.00 0.00 0.00 2.43
3136 3329 3.222173 TGGTTCAGGCAGCTTCTAAAA 57.778 42.857 0.00 0.00 0.00 1.52
3137 3330 2.949177 TGGTTCAGGCAGCTTCTAAA 57.051 45.000 0.00 0.00 0.00 1.85
3138 3331 2.573462 AGATGGTTCAGGCAGCTTCTAA 59.427 45.455 0.00 0.00 29.44 2.10
3139 3332 2.191400 AGATGGTTCAGGCAGCTTCTA 58.809 47.619 0.00 0.00 29.44 2.10
3140 3333 0.990374 AGATGGTTCAGGCAGCTTCT 59.010 50.000 0.00 0.00 0.00 2.85
3141 3334 2.698855 TAGATGGTTCAGGCAGCTTC 57.301 50.000 0.00 0.00 0.00 3.86
3142 3335 3.439857 TTTAGATGGTTCAGGCAGCTT 57.560 42.857 0.00 0.00 0.00 3.74
3143 3336 3.084786 GTTTTAGATGGTTCAGGCAGCT 58.915 45.455 0.00 0.00 0.00 4.24
3144 3337 2.159517 CGTTTTAGATGGTTCAGGCAGC 60.160 50.000 0.00 0.00 0.00 5.25
3145 3338 3.074412 ACGTTTTAGATGGTTCAGGCAG 58.926 45.455 0.00 0.00 0.00 4.85
3146 3339 3.071479 GACGTTTTAGATGGTTCAGGCA 58.929 45.455 0.00 0.00 0.00 4.75
3147 3340 3.335579 AGACGTTTTAGATGGTTCAGGC 58.664 45.455 0.00 0.00 0.00 4.85
3148 3341 8.195436 TCTATAAGACGTTTTAGATGGTTCAGG 58.805 37.037 4.75 0.00 0.00 3.86
3149 3342 9.582431 TTCTATAAGACGTTTTAGATGGTTCAG 57.418 33.333 4.75 0.00 29.52 3.02
3150 3343 9.582431 CTTCTATAAGACGTTTTAGATGGTTCA 57.418 33.333 4.75 0.00 34.37 3.18
3151 3344 9.583765 ACTTCTATAAGACGTTTTAGATGGTTC 57.416 33.333 4.75 0.00 36.50 3.62
3152 3345 9.367444 CACTTCTATAAGACGTTTTAGATGGTT 57.633 33.333 4.75 0.00 36.50 3.67
3153 3346 8.746530 TCACTTCTATAAGACGTTTTAGATGGT 58.253 33.333 4.75 0.11 36.50 3.55
3154 3347 9.582431 TTCACTTCTATAAGACGTTTTAGATGG 57.418 33.333 4.75 0.00 36.50 3.51
3157 3350 9.622004 CTGTTCACTTCTATAAGACGTTTTAGA 57.378 33.333 4.75 0.00 36.50 2.10
3158 3351 9.622004 TCTGTTCACTTCTATAAGACGTTTTAG 57.378 33.333 4.75 0.00 36.50 1.85
3159 3352 9.622004 CTCTGTTCACTTCTATAAGACGTTTTA 57.378 33.333 0.52 0.52 36.50 1.52
3160 3353 7.599245 CCTCTGTTCACTTCTATAAGACGTTTT 59.401 37.037 0.00 0.00 36.50 2.43
3161 3354 7.091443 CCTCTGTTCACTTCTATAAGACGTTT 58.909 38.462 0.00 0.00 36.50 3.60
3162 3355 6.350277 CCCTCTGTTCACTTCTATAAGACGTT 60.350 42.308 0.00 0.00 36.50 3.99
3163 3356 5.125739 CCCTCTGTTCACTTCTATAAGACGT 59.874 44.000 0.00 0.00 36.50 4.34
3164 3357 5.357314 TCCCTCTGTTCACTTCTATAAGACG 59.643 44.000 0.00 0.00 36.50 4.18
3165 3358 6.777213 TCCCTCTGTTCACTTCTATAAGAC 57.223 41.667 0.00 0.00 36.50 3.01
3166 3359 7.979786 ATTCCCTCTGTTCACTTCTATAAGA 57.020 36.000 0.00 0.00 36.50 2.10
3167 3360 8.919145 ACTATTCCCTCTGTTCACTTCTATAAG 58.081 37.037 0.00 0.00 38.77 1.73
3168 3361 8.840200 ACTATTCCCTCTGTTCACTTCTATAA 57.160 34.615 0.00 0.00 0.00 0.98
3169 3362 7.506261 GGACTATTCCCTCTGTTCACTTCTATA 59.494 40.741 0.00 0.00 35.57 1.31
3170 3363 6.325286 GGACTATTCCCTCTGTTCACTTCTAT 59.675 42.308 0.00 0.00 35.57 1.98
3171 3364 5.657302 GGACTATTCCCTCTGTTCACTTCTA 59.343 44.000 0.00 0.00 35.57 2.10
3172 3365 4.468153 GGACTATTCCCTCTGTTCACTTCT 59.532 45.833 0.00 0.00 35.57 2.85
3173 3366 4.678309 CGGACTATTCCCTCTGTTCACTTC 60.678 50.000 0.00 0.00 38.99 3.01
3174 3367 3.195825 CGGACTATTCCCTCTGTTCACTT 59.804 47.826 0.00 0.00 38.99 3.16
3175 3368 2.761208 CGGACTATTCCCTCTGTTCACT 59.239 50.000 0.00 0.00 38.99 3.41
3176 3369 2.159085 CCGGACTATTCCCTCTGTTCAC 60.159 54.545 0.00 0.00 38.99 3.18
3177 3370 2.108168 CCGGACTATTCCCTCTGTTCA 58.892 52.381 0.00 0.00 38.99 3.18
3178 3371 2.385803 TCCGGACTATTCCCTCTGTTC 58.614 52.381 0.00 0.00 38.99 3.18
3179 3372 2.544844 TCCGGACTATTCCCTCTGTT 57.455 50.000 0.00 0.00 38.99 3.16
3180 3373 2.544844 TTCCGGACTATTCCCTCTGT 57.455 50.000 1.83 0.00 38.99 3.41
3181 3374 5.482908 CATATTTCCGGACTATTCCCTCTG 58.517 45.833 1.83 0.00 38.99 3.35
3182 3375 4.532521 CCATATTTCCGGACTATTCCCTCT 59.467 45.833 1.83 0.00 38.99 3.69
3183 3376 4.530946 TCCATATTTCCGGACTATTCCCTC 59.469 45.833 1.83 0.00 38.99 4.30
3184 3377 4.499472 TCCATATTTCCGGACTATTCCCT 58.501 43.478 1.83 0.00 38.99 4.20
3185 3378 4.903045 TCCATATTTCCGGACTATTCCC 57.097 45.455 1.83 0.00 38.99 3.97
3186 3379 6.049955 TGATCCATATTTCCGGACTATTCC 57.950 41.667 1.83 0.00 38.77 3.01
3187 3380 6.540189 CCATGATCCATATTTCCGGACTATTC 59.460 42.308 1.83 0.36 33.05 1.75
3188 3381 6.215431 TCCATGATCCATATTTCCGGACTATT 59.785 38.462 1.83 0.00 33.05 1.73
3272 3466 8.591114 AGACTAGTAAAATGTACCAGAGCTAA 57.409 34.615 0.00 0.00 0.00 3.09
3274 3468 7.835181 AGTAGACTAGTAAAATGTACCAGAGCT 59.165 37.037 0.00 0.00 0.00 4.09
3310 3504 7.014711 TCTGAGGACTATGAAAACCTATAGCAG 59.985 40.741 0.00 0.00 32.53 4.24
3335 3529 6.591448 AGTGCTATAAAAATTGCCTTTGCTTC 59.409 34.615 0.00 0.00 38.71 3.86
3438 3633 8.926715 AATCCAAATTAGTTTCTTTATTCGGC 57.073 30.769 0.00 0.00 0.00 5.54
3593 3904 5.163903 TGCATTGCACGTACACAATTACTAG 60.164 40.000 7.38 0.00 34.32 2.57
3594 3905 4.691216 TGCATTGCACGTACACAATTACTA 59.309 37.500 7.38 0.00 34.32 1.82
3595 3906 3.500299 TGCATTGCACGTACACAATTACT 59.500 39.130 7.38 0.00 34.32 2.24
3596 3907 3.816091 TGCATTGCACGTACACAATTAC 58.184 40.909 7.38 5.06 34.32 1.89
3609 3920 3.944650 ACCTAATATCAACGTGCATTGCA 59.055 39.130 7.38 7.38 35.60 4.08
3610 3921 4.552166 ACCTAATATCAACGTGCATTGC 57.448 40.909 0.46 0.46 0.00 3.56
3706 4017 9.845740 AGTGTGCAGTTAATATCATACCAAATA 57.154 29.630 0.00 0.00 0.00 1.40
3707 4018 8.752005 AGTGTGCAGTTAATATCATACCAAAT 57.248 30.769 0.00 0.00 0.00 2.32
3708 4019 9.674068 TTAGTGTGCAGTTAATATCATACCAAA 57.326 29.630 0.00 0.00 0.00 3.28
3709 4020 9.674068 TTTAGTGTGCAGTTAATATCATACCAA 57.326 29.630 0.00 0.00 0.00 3.67
3710 4021 9.104965 GTTTAGTGTGCAGTTAATATCATACCA 57.895 33.333 0.00 0.00 0.00 3.25
3711 4022 8.273557 CGTTTAGTGTGCAGTTAATATCATACC 58.726 37.037 0.00 0.00 0.00 2.73
3712 4023 8.814235 ACGTTTAGTGTGCAGTTAATATCATAC 58.186 33.333 0.00 0.00 0.00 2.39
3713 4024 8.813282 CACGTTTAGTGTGCAGTTAATATCATA 58.187 33.333 0.00 0.00 45.51 2.15
3714 4025 7.684670 CACGTTTAGTGTGCAGTTAATATCAT 58.315 34.615 0.00 0.00 45.51 2.45
3715 4026 7.056002 CACGTTTAGTGTGCAGTTAATATCA 57.944 36.000 0.00 0.00 45.51 2.15
3730 4041 1.226030 GGGCGCTCAACACGTTTAGT 61.226 55.000 7.64 0.00 0.00 2.24
3731 4042 1.225376 TGGGCGCTCAACACGTTTAG 61.225 55.000 8.00 0.00 0.00 1.85
3732 4043 1.227586 TGGGCGCTCAACACGTTTA 60.228 52.632 8.00 0.00 0.00 2.01
3733 4044 2.515057 TGGGCGCTCAACACGTTT 60.515 55.556 8.00 0.00 0.00 3.60
3734 4045 3.276846 GTGGGCGCTCAACACGTT 61.277 61.111 13.97 0.00 0.00 3.99
3737 4048 2.268076 AATGGTGGGCGCTCAACAC 61.268 57.895 33.96 21.49 37.16 3.32
3738 4049 2.115052 AATGGTGGGCGCTCAACA 59.885 55.556 33.32 33.32 38.85 3.33
3739 4050 2.568090 CAATGGTGGGCGCTCAAC 59.432 61.111 21.19 21.19 0.00 3.18
3740 4051 2.676121 CCAATGGTGGGCGCTCAA 60.676 61.111 13.97 0.00 41.77 3.02
3741 4052 3.626996 CTCCAATGGTGGGCGCTCA 62.627 63.158 5.44 5.44 46.01 4.26
3742 4053 2.825836 CTCCAATGGTGGGCGCTC 60.826 66.667 7.64 2.47 46.01 5.03
3745 4056 3.136123 CTGCTCCAATGGTGGGCG 61.136 66.667 0.00 0.00 46.01 6.13
3746 4057 3.455469 GCTGCTCCAATGGTGGGC 61.455 66.667 0.00 3.54 46.01 5.36
3747 4058 2.757099 GGCTGCTCCAATGGTGGG 60.757 66.667 0.00 0.00 46.01 4.61
3749 4060 1.001764 TCAGGCTGCTCCAATGGTG 60.002 57.895 10.34 0.00 37.29 4.17
3750 4061 1.302285 CTCAGGCTGCTCCAATGGT 59.698 57.895 10.34 0.00 37.29 3.55
3751 4062 0.747283 GACTCAGGCTGCTCCAATGG 60.747 60.000 10.34 0.00 37.29 3.16
3752 4063 1.088340 CGACTCAGGCTGCTCCAATG 61.088 60.000 10.34 0.00 37.29 2.82
3753 4064 1.220206 CGACTCAGGCTGCTCCAAT 59.780 57.895 10.34 0.00 37.29 3.16
3754 4065 1.758440 AACGACTCAGGCTGCTCCAA 61.758 55.000 10.34 0.00 37.29 3.53
3755 4066 2.210013 AACGACTCAGGCTGCTCCA 61.210 57.895 10.34 0.00 37.29 3.86
3756 4067 1.739562 CAACGACTCAGGCTGCTCC 60.740 63.158 10.34 0.00 0.00 4.70
3757 4068 1.739562 CCAACGACTCAGGCTGCTC 60.740 63.158 10.34 5.79 0.00 4.26
3758 4069 1.548357 ATCCAACGACTCAGGCTGCT 61.548 55.000 10.34 0.00 0.00 4.24
3759 4070 0.674895 AATCCAACGACTCAGGCTGC 60.675 55.000 10.34 0.00 0.00 5.25
3760 4071 1.081892 CAATCCAACGACTCAGGCTG 58.918 55.000 8.58 8.58 0.00 4.85
3761 4072 0.976641 TCAATCCAACGACTCAGGCT 59.023 50.000 0.00 0.00 0.00 4.58
3762 4073 1.079503 GTCAATCCAACGACTCAGGC 58.920 55.000 0.00 0.00 0.00 4.85
3763 4074 1.276421 AGGTCAATCCAACGACTCAGG 59.724 52.381 0.00 0.00 39.02 3.86
3764 4075 2.029020 TCAGGTCAATCCAACGACTCAG 60.029 50.000 0.00 0.00 39.02 3.35
3765 4076 1.967779 TCAGGTCAATCCAACGACTCA 59.032 47.619 0.00 0.00 39.02 3.41
3766 4077 2.743636 TCAGGTCAATCCAACGACTC 57.256 50.000 0.00 0.00 39.02 3.36
3767 4078 3.703001 AATCAGGTCAATCCAACGACT 57.297 42.857 0.00 0.00 39.02 4.18
3768 4079 3.751175 TCAAATCAGGTCAATCCAACGAC 59.249 43.478 0.00 0.00 39.02 4.34
3769 4080 4.014569 TCAAATCAGGTCAATCCAACGA 57.985 40.909 0.00 0.00 39.02 3.85
3770 4081 4.439153 CCATCAAATCAGGTCAATCCAACG 60.439 45.833 0.00 0.00 39.02 4.10
3771 4082 4.678840 GCCATCAAATCAGGTCAATCCAAC 60.679 45.833 0.00 0.00 39.02 3.77
3772 4083 3.448301 GCCATCAAATCAGGTCAATCCAA 59.552 43.478 0.00 0.00 39.02 3.53
3773 4084 3.025978 GCCATCAAATCAGGTCAATCCA 58.974 45.455 0.00 0.00 39.02 3.41
3774 4085 2.363359 GGCCATCAAATCAGGTCAATCC 59.637 50.000 0.00 0.00 0.00 3.01
3775 4086 3.025978 TGGCCATCAAATCAGGTCAATC 58.974 45.455 0.00 0.00 33.39 2.67
3776 4087 3.028850 CTGGCCATCAAATCAGGTCAAT 58.971 45.455 5.51 0.00 36.46 2.57
3777 4088 2.449464 CTGGCCATCAAATCAGGTCAA 58.551 47.619 5.51 0.00 36.46 3.18
3778 4089 1.341285 CCTGGCCATCAAATCAGGTCA 60.341 52.381 5.51 0.00 41.21 4.02
3779 4090 1.064463 TCCTGGCCATCAAATCAGGTC 60.064 52.381 5.51 0.00 45.07 3.85
3780 4091 1.002069 TCCTGGCCATCAAATCAGGT 58.998 50.000 5.51 0.00 45.07 4.00
3781 4092 2.376695 ATCCTGGCCATCAAATCAGG 57.623 50.000 5.51 0.30 45.92 3.86
3782 4093 3.449737 ACAAATCCTGGCCATCAAATCAG 59.550 43.478 5.51 0.00 0.00 2.90
3783 4094 3.443052 ACAAATCCTGGCCATCAAATCA 58.557 40.909 5.51 0.00 0.00 2.57
3784 4095 4.186159 CAACAAATCCTGGCCATCAAATC 58.814 43.478 5.51 0.00 0.00 2.17
3785 4096 3.054948 CCAACAAATCCTGGCCATCAAAT 60.055 43.478 5.51 0.00 0.00 2.32
3786 4097 2.302445 CCAACAAATCCTGGCCATCAAA 59.698 45.455 5.51 0.00 0.00 2.69
3787 4098 1.901159 CCAACAAATCCTGGCCATCAA 59.099 47.619 5.51 0.00 0.00 2.57
3788 4099 1.076841 TCCAACAAATCCTGGCCATCA 59.923 47.619 5.51 0.00 32.33 3.07
3789 4100 1.851304 TCCAACAAATCCTGGCCATC 58.149 50.000 5.51 0.00 32.33 3.51
3790 4101 2.023695 AGATCCAACAAATCCTGGCCAT 60.024 45.455 5.51 0.00 32.33 4.40
3791 4102 1.358787 AGATCCAACAAATCCTGGCCA 59.641 47.619 4.71 4.71 32.33 5.36
3792 4103 1.753073 CAGATCCAACAAATCCTGGCC 59.247 52.381 0.00 0.00 32.33 5.36
3793 4104 1.135721 GCAGATCCAACAAATCCTGGC 59.864 52.381 0.00 0.00 32.33 4.85
3794 4105 1.753073 GGCAGATCCAACAAATCCTGG 59.247 52.381 0.00 0.00 34.01 4.45
3795 4106 2.686915 GAGGCAGATCCAACAAATCCTG 59.313 50.000 0.00 0.00 37.29 3.86
3796 4107 2.579860 AGAGGCAGATCCAACAAATCCT 59.420 45.455 0.00 0.00 37.29 3.24
3797 4108 3.010200 AGAGGCAGATCCAACAAATCC 57.990 47.619 0.00 0.00 37.29 3.01
3798 4109 4.381292 CCAAAGAGGCAGATCCAACAAATC 60.381 45.833 0.00 0.00 37.29 2.17
3799 4110 3.512724 CCAAAGAGGCAGATCCAACAAAT 59.487 43.478 0.00 0.00 37.29 2.32
3800 4111 2.892852 CCAAAGAGGCAGATCCAACAAA 59.107 45.455 0.00 0.00 37.29 2.83
3801 4112 2.108075 TCCAAAGAGGCAGATCCAACAA 59.892 45.455 0.00 0.00 37.29 2.83
3802 4113 1.704628 TCCAAAGAGGCAGATCCAACA 59.295 47.619 0.00 0.00 37.29 3.33
3803 4114 2.496899 TCCAAAGAGGCAGATCCAAC 57.503 50.000 0.00 0.00 37.29 3.77
3804 4115 2.848694 AGATCCAAAGAGGCAGATCCAA 59.151 45.455 0.00 0.00 36.59 3.53
3805 4116 2.485659 AGATCCAAAGAGGCAGATCCA 58.514 47.619 0.00 0.00 36.59 3.41
3806 4117 3.574354 AAGATCCAAAGAGGCAGATCC 57.426 47.619 0.00 0.00 36.59 3.36
3807 4118 5.911378 AAAAAGATCCAAAGAGGCAGATC 57.089 39.130 0.00 0.00 37.29 2.75
3808 4119 9.652114 AATATAAAAAGATCCAAAGAGGCAGAT 57.348 29.630 0.00 0.00 37.29 2.90
3809 4120 8.906867 CAATATAAAAAGATCCAAAGAGGCAGA 58.093 33.333 0.00 0.00 37.29 4.26
3810 4121 8.139989 CCAATATAAAAAGATCCAAAGAGGCAG 58.860 37.037 0.00 0.00 37.29 4.85
3811 4122 7.619302 ACCAATATAAAAAGATCCAAAGAGGCA 59.381 33.333 0.00 0.00 37.29 4.75
3812 4123 8.011844 ACCAATATAAAAAGATCCAAAGAGGC 57.988 34.615 0.00 0.00 37.29 4.70
3830 4141 9.791801 TGTTGTGCAATGTATCTATACCAATAT 57.208 29.630 0.00 0.00 32.33 1.28
3831 4142 9.791801 ATGTTGTGCAATGTATCTATACCAATA 57.208 29.630 0.00 0.00 32.33 1.90
3832 4143 8.696043 ATGTTGTGCAATGTATCTATACCAAT 57.304 30.769 0.00 0.00 32.33 3.16
3833 4144 9.791801 ATATGTTGTGCAATGTATCTATACCAA 57.208 29.630 0.00 0.00 32.33 3.67
3873 4184 1.796796 GTTTCATCCTGCCAGCGAC 59.203 57.895 0.00 0.00 0.00 5.19
4323 4755 6.970613 GGTAATCGGTTAGGCAATTTGTAAAG 59.029 38.462 0.00 0.00 0.00 1.85
4351 4783 4.635765 GCTAGCAGGTGTCATAAACATCAA 59.364 41.667 10.63 0.00 41.83 2.57
4562 4995 2.815503 TGCTTTGTCATCATCCACACTG 59.184 45.455 0.00 0.00 0.00 3.66
4747 5198 7.907214 ATACATAGTTGGTGTTTTGAGAGAC 57.093 36.000 0.00 0.00 0.00 3.36
4803 5257 4.287766 AGAAAGTAGAATCCCCACACAC 57.712 45.455 0.00 0.00 0.00 3.82
4826 5283 3.095912 TCTTGTTCCGGACTCCTGATA 57.904 47.619 1.83 0.00 0.00 2.15
5072 5529 5.113383 TGGATTGATTGCATTGCTGAATTC 58.887 37.500 10.49 0.00 0.00 2.17
5126 5584 3.217626 CAAGAAGGCACCAGAAAAGAGT 58.782 45.455 0.00 0.00 0.00 3.24
5133 5591 2.371841 ACATACACAAGAAGGCACCAGA 59.628 45.455 0.00 0.00 0.00 3.86
5151 5630 4.160252 GGTACAAAAGATGGCATCCAACAT 59.840 41.667 23.33 9.74 36.95 2.71
5224 5809 3.383681 TGCTACGGCGGGCTTACA 61.384 61.111 22.80 6.05 42.25 2.41
5232 5817 0.584396 TTTTTGACAGTGCTACGGCG 59.416 50.000 4.80 4.80 42.25 6.46
5256 5841 4.096833 GCATACATCTGGCAAGAATGTGAA 59.903 41.667 15.97 2.59 35.59 3.18
5291 5885 4.835056 AGAATTTGTTTCCCCTTTCTCTGG 59.165 41.667 0.00 0.00 34.67 3.86
5352 5947 7.065563 AGTCAAGATATGTTGATCTCTTGCAAC 59.934 37.037 17.37 8.60 40.31 4.17
5354 5949 6.647229 AGTCAAGATATGTTGATCTCTTGCA 58.353 36.000 17.37 0.00 40.31 4.08
5369 5964 8.459911 TCAGGAACGATATGTTAGTCAAGATA 57.540 34.615 0.00 0.00 42.09 1.98
5375 5970 9.530633 AAGTAAATCAGGAACGATATGTTAGTC 57.469 33.333 0.00 0.00 42.09 2.59
5384 5979 3.195661 GCCGAAGTAAATCAGGAACGAT 58.804 45.455 0.00 0.00 0.00 3.73
5385 5980 2.613691 GCCGAAGTAAATCAGGAACGA 58.386 47.619 0.00 0.00 0.00 3.85
5386 5981 1.664151 GGCCGAAGTAAATCAGGAACG 59.336 52.381 0.00 0.00 0.00 3.95
5387 5982 2.706890 TGGCCGAAGTAAATCAGGAAC 58.293 47.619 0.00 0.00 0.00 3.62
5388 5983 3.278574 CATGGCCGAAGTAAATCAGGAA 58.721 45.455 0.00 0.00 0.00 3.36
5389 5984 2.421388 CCATGGCCGAAGTAAATCAGGA 60.421 50.000 0.00 0.00 0.00 3.86
5390 5985 1.949525 CCATGGCCGAAGTAAATCAGG 59.050 52.381 0.00 0.00 0.00 3.86
5391 5986 2.643551 ACCATGGCCGAAGTAAATCAG 58.356 47.619 13.04 0.00 0.00 2.90
5392 5987 2.799126 ACCATGGCCGAAGTAAATCA 57.201 45.000 13.04 0.00 0.00 2.57
5393 5988 4.448210 TCTTACCATGGCCGAAGTAAATC 58.552 43.478 13.04 0.00 0.00 2.17
5394 5989 4.497291 TCTTACCATGGCCGAAGTAAAT 57.503 40.909 13.04 0.00 0.00 1.40
5395 5990 3.985019 TCTTACCATGGCCGAAGTAAA 57.015 42.857 13.04 0.00 0.00 2.01
5421 6016 9.294030 CATTTCTTCTTGGTAGAAAATATGCAC 57.706 33.333 0.00 0.00 42.86 4.57
5482 6077 5.596845 TGCTGCGATTTGTATGTCTGTATA 58.403 37.500 0.00 0.00 0.00 1.47
5483 6078 4.441792 TGCTGCGATTTGTATGTCTGTAT 58.558 39.130 0.00 0.00 0.00 2.29
5503 6098 0.321298 TCGTGAAGGGCTAAACCTGC 60.321 55.000 0.00 0.00 40.87 4.85
5530 6125 1.984297 GCAAACCTCTCGACGTTACTC 59.016 52.381 0.00 0.00 0.00 2.59
5533 6128 2.512485 TTGCAAACCTCTCGACGTTA 57.488 45.000 0.00 0.00 0.00 3.18
5534 6129 1.798813 GATTGCAAACCTCTCGACGTT 59.201 47.619 1.71 0.00 0.00 3.99
5535 6130 1.429463 GATTGCAAACCTCTCGACGT 58.571 50.000 1.71 0.00 0.00 4.34
5536 6131 0.721718 GGATTGCAAACCTCTCGACG 59.278 55.000 17.92 0.00 0.00 5.12
5537 6132 1.808411 TGGATTGCAAACCTCTCGAC 58.192 50.000 24.33 0.00 0.00 4.20
5538 6133 2.559698 TTGGATTGCAAACCTCTCGA 57.440 45.000 24.33 3.08 0.00 4.04
5540 6135 3.091545 TGGATTGGATTGCAAACCTCTC 58.908 45.455 24.33 19.18 0.00 3.20
5542 6137 3.959535 TTGGATTGGATTGCAAACCTC 57.040 42.857 24.33 15.15 0.00 3.85
5543 6138 3.119029 CGATTGGATTGGATTGCAAACCT 60.119 43.478 24.33 7.23 30.43 3.50
5544 6139 3.189285 CGATTGGATTGGATTGCAAACC 58.811 45.455 18.32 18.32 30.43 3.27
5545 6140 3.189285 CCGATTGGATTGGATTGCAAAC 58.811 45.455 1.71 0.00 37.49 2.93
5546 6141 2.168106 CCCGATTGGATTGGATTGCAAA 59.832 45.455 1.71 0.00 37.49 3.68
5547 6142 1.755959 CCCGATTGGATTGGATTGCAA 59.244 47.619 0.00 0.00 37.49 4.08
5549 6144 0.032540 GCCCGATTGGATTGGATTGC 59.967 55.000 0.00 0.00 37.49 3.56
5550 6145 0.311790 CGCCCGATTGGATTGGATTG 59.688 55.000 0.00 0.00 37.49 2.67
5552 6147 1.898574 GCGCCCGATTGGATTGGAT 60.899 57.895 0.00 0.00 37.49 3.41
5553 6148 2.515991 GCGCCCGATTGGATTGGA 60.516 61.111 0.00 0.00 37.49 3.53
5554 6149 3.952675 CGCGCCCGATTGGATTGG 61.953 66.667 0.00 0.00 37.49 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.