AutoCloner

Multiple sequence alignment - TraesCS4A01G248600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G248600	chr4A	100.000	3643	0	0	1	3643	559488829	559485187	0.000000e+00	6728.0
1	TraesCS4A01G248600	chr4D	94.982	1933	83	10	1718	3643	40401786	40403711	0.000000e+00	3020.0
2	TraesCS4A01G248600	chr4D	92.828	1715	77	18	1	1683	40400093	40401793	0.000000e+00	2444.0
3	TraesCS4A01G248600	chr4D	83.146	178	30	0	3466	3643	479342586	479342409	2.910000e-36	163.0
4	TraesCS4A01G248600	chr4D	79.096	177	37	0	3466	3642	56714520	56714344	4.940000e-24	122.0
5	TraesCS4A01G248600	chr4B	95.907	1759	63	4	1886	3643	58956396	58958146	0.000000e+00	2841.0
6	TraesCS4A01G248600	chr4B	90.165	1332	84	30	313	1615	58954756	58956069	0.000000e+00	1690.0
7	TraesCS4A01G248600	chr4B	90.657	578	37	13	313	877	58976959	58976386	0.000000e+00	752.0
8	TraesCS4A01G248600	chr4B	97.143	35	0	1	1682	1716	57750050	57750083	1.410000e-04	58.4
9	TraesCS4A01G248600	chr2D	89.110	753	77	4	1884	2631	71622526	71623278	0.000000e+00	931.0
10	TraesCS4A01G248600	chr2D	89.369	602	62	2	1009	1609	71621659	71622259	0.000000e+00	756.0
11	TraesCS4A01G248600	chr2D	75.214	351	39	26	455	785	71621182	71621504	4.940000e-24	122.0
12	TraesCS4A01G248600	chr2A	89.481	732	72	4	1905	2631	70675108	70675839	0.000000e+00	920.0
13	TraesCS4A01G248600	chr2A	89.055	603	64	2	1008	1609	70674282	70674883	0.000000e+00	747.0
14	TraesCS4A01G248600	chr2A	90.476	84	3	2	697	776	70674071	70674153	4.980000e-19	106.0
15	TraesCS4A01G248600	chr2B	90.272	699	68	0	1933	2631	107905291	107905989	0.000000e+00	915.0
16	TraesCS4A01G248600	chr2B	88.493	617	69	2	1008	1622	107904370	107904986	0.000000e+00	745.0
17	TraesCS4A01G248600	chr2B	77.219	338	31	21	455	778	107903936	107904241	4.870000e-34	156.0
18	TraesCS4A01G248600	chr7D	87.231	603	67	5	1029	1622	481697562	481696961	0.000000e+00	678.0
19	TraesCS4A01G248600	chr7A	86.872	617	65	7	1029	1632	548585886	548585273	0.000000e+00	676.0
20	TraesCS4A01G248600	chr7B	87.065	603	68	5	1029	1622	507141176	507140575	0.000000e+00	673.0
21	TraesCS4A01G248600	chr7B	81.054	702	127	6	1930	2628	507139519	507138821	4.110000e-154	555.0
22	TraesCS4A01G248600	chr7B	97.143	35	1	0	275	309	253635951	253635917	3.930000e-05	60.2
23	TraesCS4A01G248600	chr3A	86.149	592	73	2	1028	1610	671732039	671732630	6.640000e-177	630.0
24	TraesCS4A01G248600	chr3A	82.078	664	113	6	1956	2616	671739619	671740279	2.460000e-156	562.0
25	TraesCS4A01G248600	chr3D	81.928	664	114	6	1956	2616	536331577	536332237	1.140000e-154	556.0
26	TraesCS4A01G248600	chr3D	79.670	182	33	3	3463	3642	568193260	568193439	1.060000e-25	128.0
27	TraesCS4A01G248600	chr3D	79.213	178	35	2	3466	3642	453181530	453181354	4.940000e-24	122.0
28	TraesCS4A01G248600	chr3D	80.741	135	26	0	3508	3642	471387575	471387441	4.980000e-19	106.0
29	TraesCS4A01G248600	chr3B	81.591	679	119	6	1956	2631	708517289	708516614	1.140000e-154	556.0
30	TraesCS4A01G248600	chr3B	94.737	38	2	0	1682	1719	507388951	507388988	3.930000e-05	60.2
31	TraesCS4A01G248600	chr3B	94.737	38	2	0	1682	1719	789764501	789764464	3.930000e-05	60.2
32	TraesCS4A01G248600	chr6D	85.787	197	28	0	3447	3643	464745698	464745502	3.690000e-50	209.0
33	TraesCS4A01G248600	chr6A	84.343	198	29	2	3447	3643	611323001	611322805	3.710000e-45	193.0
34	TraesCS4A01G248600	chr6A	95.000	40	2	0	1687	1726	460621920	460621959	3.040000e-06	63.9
35	TraesCS4A01G248600	chr5D	86.842	114	14	1	196	308	254826032	254826145	3.820000e-25	126.0
36	TraesCS4A01G248600	chr1B	86.869	99	10	3	196	291	115828588	115828686	1.380000e-19	108.0
37	TraesCS4A01G248600	chr5A	83.654	104	14	2	210	310	135153651	135153548	1.080000e-15	95.3
38	TraesCS4A01G248600	chr1A	80.000	85	16	1	231	314	575742504	575742420	1.090000e-05	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G248600	chr4A	559485187	559488829	3642	True	6728.000000	6728	100.000000	1	3643	1	chr4A.!!$R1	3642
1	TraesCS4A01G248600	chr4D	40400093	40403711	3618	False	2732.000000	3020	93.905000	1	3643	2	chr4D.!!$F1	3642
2	TraesCS4A01G248600	chr4B	58954756	58958146	3390	False	2265.500000	2841	93.036000	313	3643	2	chr4B.!!$F2	3330
3	TraesCS4A01G248600	chr4B	58976386	58976959	573	True	752.000000	752	90.657000	313	877	1	chr4B.!!$R1	564
4	TraesCS4A01G248600	chr2D	71621182	71623278	2096	False	603.000000	931	84.564333	455	2631	3	chr2D.!!$F1	2176
5	TraesCS4A01G248600	chr2A	70674071	70675839	1768	False	591.000000	920	89.670667	697	2631	3	chr2A.!!$F1	1934
6	TraesCS4A01G248600	chr2B	107903936	107905989	2053	False	605.333333	915	85.328000	455	2631	3	chr2B.!!$F1	2176
7	TraesCS4A01G248600	chr7D	481696961	481697562	601	True	678.000000	678	87.231000	1029	1622	1	chr7D.!!$R1	593
8	TraesCS4A01G248600	chr7A	548585273	548585886	613	True	676.000000	676	86.872000	1029	1632	1	chr7A.!!$R1	603
9	TraesCS4A01G248600	chr7B	507138821	507141176	2355	True	614.000000	673	84.059500	1029	2628	2	chr7B.!!$R2	1599
10	TraesCS4A01G248600	chr3A	671732039	671732630	591	False	630.000000	630	86.149000	1028	1610	1	chr3A.!!$F1	582
11	TraesCS4A01G248600	chr3A	671739619	671740279	660	False	562.000000	562	82.078000	1956	2616	1	chr3A.!!$F2	660
12	TraesCS4A01G248600	chr3D	536331577	536332237	660	False	556.000000	556	81.928000	1956	2616	1	chr3D.!!$F1	660
13	TraesCS4A01G248600	chr3B	708516614	708517289	675	True	556.000000	556	81.591000	1956	2631	1	chr3B.!!$R1	675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
280	297	0.113776	ACCAGACCCGGAGTACTTCA	59.886	55.000	0.73	0.00	3.02	F
909	995	1.135112	CGTACAGACTGCATGGTGCTA	60.135	52.381	1.25	45.31	3.49	F
914	1000	1.208052	AGACTGCATGGTGCTATTCGT	59.792	47.619	3.41	45.31	3.85	F
2336	3342	0.178068	TTAGCTCGGCCAAGGATGTC	59.822	55.000	2.24	0.00	3.06	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	End Stability	Orientation
1554	1731	0.036022	GCCTGTGGAGAAGAAGCAGT	59.964	55.0	0.00	4.40	R
2336	3342	1.035923	TCTTAGATCTGAGCAGGGCG	58.964	55.0	9.62	6.13	R
2441	3447	2.688446	CACATCGTGGAGCCTACTAGAA	59.312	50.0	0.00	2.10	R
3147	4156	0.624795	GGGGGAAGAGGGGAGTCATT	60.625	60.0	0.00	2.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	1.464429	CTCGACTTGACGCGATTCGG	61.464	60.000	15.93	0.28	43.86	4.30
38	39	0.604578	GGTACTACACCTTCGGCACA	59.395	55.000	0.00	0.00	44.79	4.57
48	49	1.410737	CTTCGGCACATACGACCACG	61.411	60.000	0.00	0.00	40.45	4.94
50	51	2.433491	GGCACATACGACCACGCA	60.433	61.111	0.00	0.00	43.96	5.24
52	53	1.131826	GCACATACGACCACGCAAC	59.868	57.895	0.00	0.00	43.96	4.17
58	59	0.598158	TACGACCACGCAACCAAGAC	60.598	55.000	0.00	0.00	43.96	3.01
72	73	2.554636	AAGACGTACGTGCCGGACA	61.555	57.895	28.16	0.00	41.29	4.02
73	74	1.870055	AAGACGTACGTGCCGGACAT	61.870	55.000	28.16	0.00	41.29	3.06
76	77	1.735198	CGTACGTGCCGGACATTGT	60.735	57.895	5.05	8.62	41.29	2.71
90	91	0.671472	CATTGTGCTCGCAGACTCCA	60.671	55.000	0.00	0.00	0.00	3.86
91	92	0.671781	ATTGTGCTCGCAGACTCCAC	60.672	55.000	0.00	0.00	0.00	4.02
94	95	4.803426	GCTCGCAGACTCCACCGG	62.803	72.222	0.00	0.00	0.00	5.28
127	128	6.442564	TGCTCTTAAACTAAGGACCCTGATAA	59.557	38.462	0.00	0.00	36.45	1.75
133	134	2.348411	AAGGACCCTGATAAATGCCG	57.652	50.000	0.00	0.00	0.00	5.69
139	140	1.577468	CCTGATAAATGCCGCACGTA	58.423	50.000	0.00	0.00	0.00	3.57
141	142	2.096268	CCTGATAAATGCCGCACGTATG	60.096	50.000	0.00	0.00	0.00	2.39
146	147	0.672091	AATGCCGCACGTATGACACA	60.672	50.000	0.00	0.00	0.00	3.72
165	166	0.390124	AAACACATGGCAACTGCAGG	59.610	50.000	19.93	1.57	44.36	4.85
169	170	4.666253	ATGGCAACTGCAGGCGGT	62.666	61.111	19.93	0.00	44.36	5.68
188	189	3.980775	CGGTTTTGATGCCAAGTTTAGTG	59.019	43.478	0.00	0.00	33.23	2.74
193	194	3.419943	TGATGCCAAGTTTAGTGATGCA	58.580	40.909	0.00	0.00	0.00	3.96
197	214	3.253188	TGCCAAGTTTAGTGATGCAAGAC	59.747	43.478	0.00	0.00	0.00	3.01
244	261	6.879188	TTGTTTTTCTTTTCGGATGACAAC	57.121	33.333	0.00	0.00	0.00	3.32
275	292	1.426751	AAAACACCAGACCCGGAGTA	58.573	50.000	0.73	0.00	0.00	2.59
276	293	0.683412	AAACACCAGACCCGGAGTAC	59.317	55.000	0.73	0.00	0.00	2.73
280	297	0.113776	ACCAGACCCGGAGTACTTCA	59.886	55.000	0.73	0.00	0.00	3.02
291	308	2.094390	GGAGTACTTCATGCCACACGTA	60.094	50.000	0.00	0.00	0.00	3.57
294	311	1.737838	ACTTCATGCCACACGTATGG	58.262	50.000	8.99	8.99	43.26	2.74
308	325	5.064579	CACACGTATGGCACTTATCATTTGA	59.935	40.000	0.00	0.00	0.00	2.69
437	459	1.895231	CACCTGCTGCACTGCTGAA	60.895	57.895	11.81	0.11	34.47	3.02
838	894	5.909621	TGTTGGAGTAGCTAATACGAGTT	57.090	39.130	0.00	0.00	39.55	3.01
909	995	1.135112	CGTACAGACTGCATGGTGCTA	60.135	52.381	1.25	0.00	45.31	3.49
914	1000	1.208052	AGACTGCATGGTGCTATTCGT	59.792	47.619	3.41	0.00	45.31	3.85
915	1001	2.430694	AGACTGCATGGTGCTATTCGTA	59.569	45.455	3.41	0.00	45.31	3.43
916	1002	3.070159	AGACTGCATGGTGCTATTCGTAT	59.930	43.478	3.41	0.00	45.31	3.06
917	1003	3.393800	ACTGCATGGTGCTATTCGTATC	58.606	45.455	3.41	0.00	45.31	2.24
959	1053	4.104183	CTCCCCGGCCGGCTTTAA	62.104	66.667	39.46	19.09	0.00	1.52
971	1069	4.202080	GGCCGGCTTTAAATAAAGGGTAAG	60.202	45.833	28.56	0.00	42.17	2.34
1188	1362	3.009714	GTCTCCCTCGGCCCCTTT	61.010	66.667	0.00	0.00	0.00	3.11
1342	1516	2.967397	CGTACAAGGACCTCGGCA	59.033	61.111	0.00	0.00	0.00	5.69
1687	1914	9.588096	AATAAATACCATCCTACCATTTTCTCC	57.412	33.333	0.00	0.00	0.00	3.71
1688	1915	3.953542	ACCATCCTACCATTTTCTCCC	57.046	47.619	0.00	0.00	0.00	4.30
1689	1916	3.197983	ACCATCCTACCATTTTCTCCCA	58.802	45.455	0.00	0.00	0.00	4.37
1693	1920	5.104109	CCATCCTACCATTTTCTCCCAACTA	60.104	44.000	0.00	0.00	0.00	2.24
1695	1922	4.847512	TCCTACCATTTTCTCCCAACTACA	59.152	41.667	0.00	0.00	0.00	2.74
1697	1924	5.648092	CCTACCATTTTCTCCCAACTACAAG	59.352	44.000	0.00	0.00	0.00	3.16
1698	1925	5.061721	ACCATTTTCTCCCAACTACAAGT	57.938	39.130	0.00	0.00	0.00	3.16
1699	1926	6.195600	ACCATTTTCTCCCAACTACAAGTA	57.804	37.500	0.00	0.00	0.00	2.24
1702	1929	7.728532	ACCATTTTCTCCCAACTACAAGTATTT	59.271	33.333	0.00	0.00	0.00	1.40
1704	1931	7.429636	TTTTCTCCCAACTACAAGTATTTCG	57.570	36.000	0.00	0.00	0.00	3.46
1705	1932	5.080969	TCTCCCAACTACAAGTATTTCGG	57.919	43.478	0.00	0.00	0.00	4.30
1712	1939	6.869913	CCAACTACAAGTATTTCGGTACAGAA	59.130	38.462	4.18	4.18	0.00	3.02
1753	1981	7.655490	AGAATAACATGGAGCATCAAAATAGC	58.345	34.615	0.00	0.00	36.25	2.97
1754	1982	6.964807	ATAACATGGAGCATCAAAATAGCA	57.035	33.333	0.00	0.00	36.25	3.49
1973	2973	2.683211	AGTTGGTGCTTGATTCCCTT	57.317	45.000	0.00	0.00	0.00	3.95
2336	3342	0.178068	TTAGCTCGGCCAAGGATGTC	59.822	55.000	2.24	0.00	0.00	3.06
2441	3447	1.383803	GGGAGGAGTGATGAGCCCT	60.384	63.158	0.00	0.00	32.78	5.19
2633	3639	2.888414	GGTTGCACCCTTTTACAAGCTA	59.112	45.455	0.00	0.00	37.50	3.32
2643	3649	7.173390	CACCCTTTTACAAGCTAATATCCTAGC	59.827	40.741	0.00	0.00	43.95	3.42
3000	4009	6.018016	CGTTCATTATGGACATCTATGCAACA	60.018	38.462	4.37	0.00	0.00	3.33
3124	4133	9.920946	AGAATATAAACTTGGGTATGTGACAAT	57.079	29.630	0.00	0.00	0.00	2.71
3147	4156	6.522625	TCTGAAGTTCACAAAAATGGACAA	57.477	33.333	0.08	0.00	29.50	3.18
3322	4332	4.711980	GACTACATGTCGAGCCCG	57.288	61.111	0.00	0.00	35.81	6.13
3347	4357	4.181010	CCCTCGCCATGGACAGGG	62.181	72.222	26.50	26.50	39.90	4.45
3358	4368	1.302832	GGACAGGGTCTGCCACAAG	60.303	63.158	0.00	0.00	34.37	3.16
3377	4387	4.010349	CAAGAGATGTAACCCCCTTTGTC	58.990	47.826	0.00	0.00	0.00	3.18
3379	4389	1.982958	AGATGTAACCCCCTTTGTCGT	59.017	47.619	0.00	0.00	0.00	4.34
3383	4393	1.071228	GTAACCCCCTTTGTCGTGACT	59.929	52.381	1.23	0.00	0.00	3.41
3407	4417	4.762251	GCCTTGATAGGGACAACATATTCC	59.238	45.833	0.00	0.00	42.25	3.01
3575	4585	3.051341	TGTCCATCTATACTTCCCCACCT	60.051	47.826	0.00	0.00	0.00	4.00

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
6	7	1.093972	TAGTACCCGAATCGCGTCAA	58.906	50.000	5.77	0.00	38.67	3.18
36	37	0.249953	TTGGTTGCGTGGTCGTATGT	60.250	50.000	0.00	0.00	39.49	2.29
38	39	0.319083	TCTTGGTTGCGTGGTCGTAT	59.681	50.000	0.00	0.00	39.49	3.06
48	49	1.203313	GCACGTACGTCTTGGTTGC	59.797	57.895	19.94	13.44	0.00	4.17
50	51	4.348857	GGCACGTACGTCTTGGTT	57.651	55.556	19.94	0.00	0.00	3.67
72	73	0.671781	GTGGAGTCTGCGAGCACAAT	60.672	55.000	0.00	0.00	0.00	2.71
73	74	1.300931	GTGGAGTCTGCGAGCACAA	60.301	57.895	0.00	0.00	0.00	3.33
76	77	4.056125	CGGTGGAGTCTGCGAGCA	62.056	66.667	0.00	0.00	0.00	4.26
94	95	0.669625	AGTTTAAGAGCACGGCGTCC	60.670	55.000	10.85	0.00	0.00	4.79
99	100	3.259902	GGTCCTTAGTTTAAGAGCACGG	58.740	50.000	0.00	0.00	38.02	4.94
127	128	0.672091	TGTGTCATACGTGCGGCATT	60.672	50.000	5.72	0.00	0.00	3.56
133	134	3.225548	CATGTGTTTGTGTCATACGTGC	58.774	45.455	0.00	0.00	0.00	5.34
139	140	2.694628	AGTTGCCATGTGTTTGTGTCAT	59.305	40.909	0.00	0.00	0.00	3.06
141	142	2.462889	CAGTTGCCATGTGTTTGTGTC	58.537	47.619	0.00	0.00	0.00	3.67
146	147	0.390124	CCTGCAGTTGCCATGTGTTT	59.610	50.000	13.81	0.00	41.18	2.83
165	166	1.864565	AAACTTGGCATCAAAACCGC	58.135	45.000	0.00	0.00	31.77	5.68
169	170	5.221402	TGCATCACTAAACTTGGCATCAAAA	60.221	36.000	0.00	0.00	31.77	2.44
188	189	1.266718	TGAAACTTGCCGTCTTGCATC	59.733	47.619	0.00	0.00	41.70	3.91
193	194	4.450082	AAAAACTGAAACTTGCCGTCTT	57.550	36.364	0.00	0.00	0.00	3.01
218	235	5.808030	TGTCATCCGAAAAGAAAAACAAACC	59.192	36.000	0.00	0.00	0.00	3.27
223	240	7.520119	AAAGTTGTCATCCGAAAAGAAAAAC	57.480	32.000	0.00	0.00	0.00	2.43
261	278	0.113776	TGAAGTACTCCGGGTCTGGT	59.886	55.000	0.00	0.00	0.00	4.00
262	279	1.137086	CATGAAGTACTCCGGGTCTGG	59.863	57.143	0.00	0.00	0.00	3.86
266	283	0.907704	TGGCATGAAGTACTCCGGGT	60.908	55.000	0.00	0.32	0.00	5.28
275	292	1.737838	CCATACGTGTGGCATGAAGT	58.262	50.000	18.97	0.00	31.43	3.01
291	308	7.944729	AGTTTACTCAAATGATAAGTGCCAT	57.055	32.000	0.00	0.00	0.00	4.40
437	459	3.567579	CTTGGTGATGGTGCCCGGT	62.568	63.158	0.00	0.00	0.00	5.28
838	894	5.972935	TCGAACAAGGCTATCTTTACATGA	58.027	37.500	0.00	0.00	32.41	3.07
951	1037	4.928601	GGCTTACCCTTTATTTAAAGCCG	58.071	43.478	8.03	0.84	46.62	5.52
953	1039	4.142337	TGCGGCTTACCCTTTATTTAAAGC	60.142	41.667	0.00	0.00	40.93	3.51
956	1050	4.142337	GCTTGCGGCTTACCCTTTATTTAA	60.142	41.667	0.00	0.00	38.06	1.52
959	1053	1.749063	GCTTGCGGCTTACCCTTTATT	59.251	47.619	0.00	0.00	38.06	1.40
971	1069	1.138247	CCTTTGATCAGCTTGCGGC	59.862	57.895	0.00	0.00	42.19	6.53
1411	1588	1.454976	CCATCCTCATGGCCTCCAG	59.545	63.158	3.32	0.00	43.55	3.86
1554	1731	0.036022	GCCTGTGGAGAAGAAGCAGT	59.964	55.000	0.00	0.00	0.00	4.40
1676	1903	5.061721	ACTTGTAGTTGGGAGAAAATGGT	57.938	39.130	0.00	0.00	0.00	3.55
1677	1904	7.703058	AATACTTGTAGTTGGGAGAAAATGG	57.297	36.000	0.00	0.00	0.00	3.16
1678	1905	7.962918	CGAAATACTTGTAGTTGGGAGAAAATG	59.037	37.037	0.00	0.00	0.00	2.32
1679	1906	7.120726	CCGAAATACTTGTAGTTGGGAGAAAAT	59.879	37.037	13.94	0.00	0.00	1.82
1686	1913	5.481105	TGTACCGAAATACTTGTAGTTGGG	58.519	41.667	16.40	16.40	0.00	4.12
1687	1914	6.392354	TCTGTACCGAAATACTTGTAGTTGG	58.608	40.000	0.00	3.87	0.00	3.77
1688	1915	7.063074	CCTTCTGTACCGAAATACTTGTAGTTG	59.937	40.741	1.23	0.00	0.00	3.16
1689	1916	7.039504	TCCTTCTGTACCGAAATACTTGTAGTT	60.040	37.037	1.23	0.00	0.00	2.24
1693	1920	5.245526	ACTCCTTCTGTACCGAAATACTTGT	59.754	40.000	1.23	0.00	0.00	3.16
1695	1922	5.997384	ACTCCTTCTGTACCGAAATACTT	57.003	39.130	1.23	0.00	0.00	2.24
1697	1924	5.586339	GGTACTCCTTCTGTACCGAAATAC	58.414	45.833	7.23	2.75	46.74	1.89
1698	1925	5.841957	GGTACTCCTTCTGTACCGAAATA	57.158	43.478	7.23	0.00	46.74	1.40
1699	1926	4.732672	GGTACTCCTTCTGTACCGAAAT	57.267	45.455	7.23	0.00	46.74	2.17
1705	1932	8.517062	TCTAGTAAATGGTACTCCTTCTGTAC	57.483	38.462	0.00	0.00	39.43	2.90
1753	1981	4.900635	AGTACAAAGCAGTTTGAACCTG	57.099	40.909	5.51	0.00	45.22	4.00
1754	1982	7.399245	TTTTAGTACAAAGCAGTTTGAACCT	57.601	32.000	5.51	1.58	45.22	3.50
1807	2409	6.478673	TGACAGTGTGTGTGTATCTACAAAAG	59.521	38.462	0.00	0.00	40.56	2.27
1825	2496	5.679734	AACAGCTCAGTAATTTGACAGTG	57.320	39.130	0.00	0.00	0.00	3.66
1871	2542	4.852138	GCATTCTGCATCGAAACACATAT	58.148	39.130	0.00	0.00	44.26	1.78
1973	2973	3.545124	ATGTCGGCGCCAAGGACAA	62.545	57.895	30.71	18.57	43.21	3.18
2021	3027	1.272816	TGGTGTAAGATGTCGAGGGGA	60.273	52.381	0.00	0.00	0.00	4.81
2336	3342	1.035923	TCTTAGATCTGAGCAGGGCG	58.964	55.000	9.62	0.00	0.00	6.13
2441	3447	2.688446	CACATCGTGGAGCCTACTAGAA	59.312	50.000	0.00	0.00	0.00	2.10
2643	3649	6.267928	AGGGATGGCATACTAACTTACTACTG	59.732	42.308	10.07	0.00	0.00	2.74
2976	3985	7.263100	TGTTGCATAGATGTCCATAATGAAC	57.737	36.000	0.00	7.63	0.00	3.18
3124	4133	6.522625	TTGTCCATTTTTGTGAACTTCAGA	57.477	33.333	0.00	0.00	0.00	3.27
3147	4156	0.624795	GGGGGAAGAGGGGAGTCATT	60.625	60.000	0.00	0.00	0.00	2.57
3347	4357	3.003480	GGTTACATCTCTTGTGGCAGAC	58.997	50.000	0.00	0.00	39.48	3.51
3358	4368	2.027469	ACGACAAAGGGGGTTACATCTC	60.027	50.000	0.00	0.00	0.00	2.75
3377	4387	0.824109	TCCCTATCAAGGCAGTCACG	59.176	55.000	0.00	0.00	42.14	4.35
3379	4389	1.951209	TGTCCCTATCAAGGCAGTCA	58.049	50.000	0.00	0.00	42.14	3.41
3383	4393	5.376625	GAATATGTTGTCCCTATCAAGGCA	58.623	41.667	0.00	0.00	42.14	4.75
3407	4417	4.569966	AGCAAGCAGTTCGATAAGAGATTG	59.430	41.667	0.00	0.00	0.00	2.67

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.