Multiple sequence alignment - TraesCS4A01G247900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G247900 chr4A 100.000 2360 0 0 1 2360 558677367 558675008 0.000000e+00 4359.0
1 TraesCS4A01G247900 chr4D 92.536 1688 102 7 688 2354 40824124 40825808 0.000000e+00 2398.0
2 TraesCS4A01G247900 chr4D 94.175 309 16 2 386 693 444466339 444466646 9.870000e-129 470.0
3 TraesCS4A01G247900 chr4D 97.987 149 2 1 201 348 40823958 40824106 8.370000e-65 257.0
4 TraesCS4A01G247900 chr4D 74.217 415 87 17 1910 2312 40117910 40118316 3.140000e-34 156.0
5 TraesCS4A01G247900 chr4B 91.830 918 53 4 890 1794 59866217 59867125 0.000000e+00 1260.0
6 TraesCS4A01G247900 chr4B 93.770 305 18 1 386 689 324776061 324776365 7.690000e-125 457.0
7 TraesCS4A01G247900 chr4B 92.925 212 10 3 177 387 59865011 59865218 1.060000e-78 303.0
8 TraesCS4A01G247900 chr4B 91.613 155 11 2 747 900 59865216 59865369 1.840000e-51 213.0
9 TraesCS4A01G247900 chr6A 94.426 305 16 1 386 689 607063089 607063393 3.550000e-128 468.0
10 TraesCS4A01G247900 chr5A 93.851 309 18 1 385 692 36016833 36016525 4.590000e-127 464.0
11 TraesCS4A01G247900 chr5A 74.085 355 77 12 1916 2258 10844180 10844531 5.290000e-27 132.0
12 TraesCS4A01G247900 chrUn 93.811 307 18 1 384 689 12151028 12151334 5.940000e-126 460.0
13 TraesCS4A01G247900 chrUn 93.811 307 18 1 384 689 285687178 285687484 5.940000e-126 460.0
14 TraesCS4A01G247900 chrUn 77.806 392 72 10 1820 2198 26526182 26526571 6.560000e-56 228.0
15 TraesCS4A01G247900 chrUn 81.921 177 28 4 1747 1923 175708058 175707886 1.890000e-31 147.0
16 TraesCS4A01G247900 chr7D 93.770 305 17 2 386 689 455570658 455570355 7.690000e-125 457.0
17 TraesCS4A01G247900 chr7D 84.397 141 18 4 696 835 135087736 135087873 4.090000e-28 135.0
18 TraesCS4A01G247900 chr7D 87.324 71 7 2 728 797 25490581 25490650 1.940000e-11 80.5
19 TraesCS4A01G247900 chr6B 93.226 310 17 4 386 692 242221456 242221764 9.940000e-124 453.0
20 TraesCS4A01G247900 chr6B 74.672 458 91 20 1916 2358 200035067 200034620 1.860000e-41 180.0
21 TraesCS4A01G247900 chr3A 92.138 318 23 2 373 689 698756887 698757203 4.630000e-122 448.0
22 TraesCS4A01G247900 chr3B 83.902 410 52 6 1919 2316 546181199 546180792 1.710000e-101 379.0
23 TraesCS4A01G247900 chr3B 81.938 227 36 4 1700 1922 501396813 501397038 1.110000e-43 187.0
24 TraesCS4A01G247900 chr2D 80.208 480 68 18 914 1368 74986627 74986150 3.760000e-88 335.0
25 TraesCS4A01G247900 chr2D 76.368 457 82 19 1916 2355 142477003 142476556 3.050000e-54 222.0
26 TraesCS4A01G247900 chr2B 77.164 670 93 38 1712 2334 157270916 157271572 3.760000e-88 335.0
27 TraesCS4A01G247900 chr2B 80.531 226 35 6 1909 2130 597539241 597539021 5.220000e-37 165.0
28 TraesCS4A01G247900 chr2A 82.597 385 55 6 996 1368 74562115 74561731 1.750000e-86 329.0
29 TraesCS4A01G247900 chr5D 74.370 675 117 38 1708 2336 447190245 447190909 1.090000e-58 237.0
30 TraesCS4A01G247900 chr7A 84.286 210 30 3 1713 1921 547553007 547553214 3.980000e-48 202.0
31 TraesCS4A01G247900 chr5B 84.038 213 29 4 1712 1922 6576695 6576904 1.430000e-47 200.0
32 TraesCS4A01G247900 chr5B 73.695 498 88 27 1747 2212 670441306 670440820 1.130000e-33 154.0
33 TraesCS4A01G247900 chr5B 81.356 177 30 3 1747 1923 670386206 670386033 8.790000e-30 141.0
34 TraesCS4A01G247900 chr5B 82.857 105 10 7 226 324 5433710 5433608 1.160000e-13 87.9
35 TraesCS4A01G247900 chr3D 75.546 458 78 25 1916 2353 13292881 13293324 6.660000e-46 195.0
36 TraesCS4A01G247900 chr3D 83.803 142 15 8 696 833 583517023 583517160 6.850000e-26 128.0
37 TraesCS4A01G247900 chr3D 83.688 141 17 6 696 833 583526470 583526607 6.850000e-26 128.0
38 TraesCS4A01G247900 chr3D 84.404 109 13 4 696 802 583515423 583515529 1.150000e-18 104.0
39 TraesCS4A01G247900 chr6D 85.246 61 5 2 1495 1554 453483906 453483963 2.530000e-05 60.2
40 TraesCS4A01G247900 chr7B 100.000 28 0 0 1529 1556 169463568 169463541 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G247900 chr4A 558675008 558677367 2359 True 4359.0 4359 100.000000 1 2360 1 chr4A.!!$R1 2359
1 TraesCS4A01G247900 chr4D 40823958 40825808 1850 False 1327.5 2398 95.261500 201 2354 2 chr4D.!!$F3 2153
2 TraesCS4A01G247900 chr4B 59865011 59867125 2114 False 592.0 1260 92.122667 177 1794 3 chr4B.!!$F2 1617
3 TraesCS4A01G247900 chr2B 157270916 157271572 656 False 335.0 335 77.164000 1712 2334 1 chr2B.!!$F1 622
4 TraesCS4A01G247900 chr5D 447190245 447190909 664 False 237.0 237 74.370000 1708 2336 1 chr5D.!!$F1 628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
367 369 0.429736 CGACTACGTGTGAAGCAACG 59.57 55.0 0.0 0.0 34.56 4.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 2624 0.523072 CTAACCACGCAGCAAAGCAT 59.477 50.0 0.0 0.0 0.0 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.658063 TGTTAAGGGGAGTTGGTACATTG 58.342 43.478 0.00 0.00 39.30 2.82
23 24 4.105057 TGTTAAGGGGAGTTGGTACATTGT 59.895 41.667 0.00 0.00 39.30 2.71
24 25 3.434940 AAGGGGAGTTGGTACATTGTC 57.565 47.619 0.00 0.00 39.30 3.18
25 26 1.278127 AGGGGAGTTGGTACATTGTCG 59.722 52.381 0.00 0.00 39.30 4.35
26 27 1.002773 GGGGAGTTGGTACATTGTCGT 59.997 52.381 0.00 0.00 39.30 4.34
27 28 2.551504 GGGGAGTTGGTACATTGTCGTT 60.552 50.000 0.00 0.00 39.30 3.85
28 29 3.143728 GGGAGTTGGTACATTGTCGTTT 58.856 45.455 0.00 0.00 39.30 3.60
29 30 3.187842 GGGAGTTGGTACATTGTCGTTTC 59.812 47.826 0.00 0.00 39.30 2.78
30 31 3.120786 GGAGTTGGTACATTGTCGTTTCG 60.121 47.826 0.00 0.00 39.30 3.46
31 32 2.222445 AGTTGGTACATTGTCGTTTCGC 59.778 45.455 0.00 0.00 39.30 4.70
32 33 1.867166 TGGTACATTGTCGTTTCGCA 58.133 45.000 0.00 0.00 0.00 5.10
33 34 2.418692 TGGTACATTGTCGTTTCGCAT 58.581 42.857 0.00 0.00 0.00 4.73
34 35 2.158645 TGGTACATTGTCGTTTCGCATG 59.841 45.455 0.00 0.00 0.00 4.06
35 36 2.166007 GTACATTGTCGTTTCGCATGC 58.834 47.619 7.91 7.91 0.00 4.06
36 37 0.590682 ACATTGTCGTTTCGCATGCA 59.409 45.000 19.57 1.73 0.00 3.96
37 38 1.001924 ACATTGTCGTTTCGCATGCAA 60.002 42.857 19.57 8.45 0.00 4.08
38 39 2.252747 CATTGTCGTTTCGCATGCAAT 58.747 42.857 19.57 4.10 0.00 3.56
39 40 2.414058 TTGTCGTTTCGCATGCAATT 57.586 40.000 19.57 0.00 0.00 2.32
40 41 1.684142 TGTCGTTTCGCATGCAATTG 58.316 45.000 19.57 0.00 0.00 2.32
41 42 1.265365 TGTCGTTTCGCATGCAATTGA 59.735 42.857 19.57 3.42 0.00 2.57
42 43 2.095314 TGTCGTTTCGCATGCAATTGAT 60.095 40.909 19.57 0.00 0.00 2.57
43 44 2.916716 GTCGTTTCGCATGCAATTGATT 59.083 40.909 19.57 0.00 0.00 2.57
44 45 3.364621 GTCGTTTCGCATGCAATTGATTT 59.635 39.130 19.57 0.00 0.00 2.17
45 46 3.364322 TCGTTTCGCATGCAATTGATTTG 59.636 39.130 19.57 4.06 38.43 2.32
46 47 3.482274 CGTTTCGCATGCAATTGATTTGG 60.482 43.478 19.57 0.00 35.75 3.28
47 48 1.642728 TCGCATGCAATTGATTTGGC 58.357 45.000 19.57 3.93 35.75 4.52
48 49 1.067071 TCGCATGCAATTGATTTGGCA 60.067 42.857 19.57 0.00 35.75 4.92
49 50 1.061421 CGCATGCAATTGATTTGGCAC 59.939 47.619 19.57 0.00 35.75 5.01
50 51 1.061421 GCATGCAATTGATTTGGCACG 59.939 47.619 14.21 0.00 35.75 5.34
51 52 2.608268 CATGCAATTGATTTGGCACGA 58.392 42.857 10.34 0.00 35.75 4.35
52 53 2.808523 TGCAATTGATTTGGCACGAA 57.191 40.000 10.34 0.00 35.75 3.85
53 54 3.103447 TGCAATTGATTTGGCACGAAA 57.897 38.095 10.34 0.00 35.75 3.46
54 55 3.461061 TGCAATTGATTTGGCACGAAAA 58.539 36.364 10.34 0.00 35.75 2.29
55 56 3.873361 TGCAATTGATTTGGCACGAAAAA 59.127 34.783 10.34 0.00 35.75 1.94
77 78 8.882557 AAAAATCCCTATTTAAACCGACCTAA 57.117 30.769 0.00 0.00 34.12 2.69
78 79 8.515695 AAAATCCCTATTTAAACCGACCTAAG 57.484 34.615 0.00 0.00 34.12 2.18
79 80 6.819947 ATCCCTATTTAAACCGACCTAAGT 57.180 37.500 0.00 0.00 0.00 2.24
80 81 7.919385 ATCCCTATTTAAACCGACCTAAGTA 57.081 36.000 0.00 0.00 0.00 2.24
81 82 7.732222 TCCCTATTTAAACCGACCTAAGTAA 57.268 36.000 0.00 0.00 0.00 2.24
82 83 8.322905 TCCCTATTTAAACCGACCTAAGTAAT 57.677 34.615 0.00 0.00 0.00 1.89
83 84 8.771286 TCCCTATTTAAACCGACCTAAGTAATT 58.229 33.333 0.00 0.00 0.00 1.40
84 85 8.833493 CCCTATTTAAACCGACCTAAGTAATTG 58.167 37.037 0.00 0.00 0.00 2.32
85 86 8.340443 CCTATTTAAACCGACCTAAGTAATTGC 58.660 37.037 0.00 0.00 0.00 3.56
86 87 7.690952 ATTTAAACCGACCTAAGTAATTGCA 57.309 32.000 0.00 0.00 0.00 4.08
87 88 7.690952 TTTAAACCGACCTAAGTAATTGCAT 57.309 32.000 0.00 0.00 0.00 3.96
88 89 5.560966 AAACCGACCTAAGTAATTGCATG 57.439 39.130 0.00 0.00 0.00 4.06
89 90 4.216411 ACCGACCTAAGTAATTGCATGT 57.784 40.909 0.00 0.00 0.00 3.21
90 91 5.347620 ACCGACCTAAGTAATTGCATGTA 57.652 39.130 0.00 0.00 0.00 2.29
91 92 5.925509 ACCGACCTAAGTAATTGCATGTAT 58.074 37.500 0.00 0.00 0.00 2.29
92 93 7.058023 ACCGACCTAAGTAATTGCATGTATA 57.942 36.000 0.00 0.00 0.00 1.47
93 94 7.502696 ACCGACCTAAGTAATTGCATGTATAA 58.497 34.615 0.00 0.00 0.00 0.98
94 95 8.154856 ACCGACCTAAGTAATTGCATGTATAAT 58.845 33.333 0.00 0.00 0.00 1.28
95 96 8.999431 CCGACCTAAGTAATTGCATGTATAATT 58.001 33.333 0.00 2.62 0.00 1.40
96 97 9.811655 CGACCTAAGTAATTGCATGTATAATTG 57.188 33.333 12.12 1.80 0.00 2.32
130 131 9.685276 ACCTAATTCATGACATTAATGACTTGA 57.315 29.630 22.16 22.65 35.87 3.02
149 150 9.611284 TGACTTGATTTTCAAATTATTCTGACG 57.389 29.630 0.00 0.00 35.73 4.35
150 151 8.452989 ACTTGATTTTCAAATTATTCTGACGC 57.547 30.769 0.00 0.00 35.73 5.19
151 152 8.081633 ACTTGATTTTCAAATTATTCTGACGCA 58.918 29.630 0.00 0.00 35.73 5.24
152 153 7.795431 TGATTTTCAAATTATTCTGACGCAC 57.205 32.000 0.00 0.00 0.00 5.34
153 154 6.522855 TGATTTTCAAATTATTCTGACGCACG 59.477 34.615 0.00 0.00 0.00 5.34
154 155 4.335082 TTCAAATTATTCTGACGCACGG 57.665 40.909 0.00 0.00 0.00 4.94
155 156 3.331150 TCAAATTATTCTGACGCACGGT 58.669 40.909 0.00 0.00 0.00 4.83
156 157 3.749088 TCAAATTATTCTGACGCACGGTT 59.251 39.130 0.00 0.00 0.00 4.44
157 158 4.214545 TCAAATTATTCTGACGCACGGTTT 59.785 37.500 0.00 0.00 0.00 3.27
158 159 4.336532 AATTATTCTGACGCACGGTTTC 57.663 40.909 0.00 0.00 0.00 2.78
159 160 2.736144 TATTCTGACGCACGGTTTCT 57.264 45.000 0.00 0.00 0.00 2.52
160 161 2.736144 ATTCTGACGCACGGTTTCTA 57.264 45.000 0.00 0.00 0.00 2.10
161 162 2.512485 TTCTGACGCACGGTTTCTAA 57.488 45.000 0.00 0.00 0.00 2.10
162 163 2.512485 TCTGACGCACGGTTTCTAAA 57.488 45.000 0.00 0.00 0.00 1.85
163 164 3.034721 TCTGACGCACGGTTTCTAAAT 57.965 42.857 0.00 0.00 0.00 1.40
164 165 3.395639 TCTGACGCACGGTTTCTAAATT 58.604 40.909 0.00 0.00 0.00 1.82
165 166 4.558178 TCTGACGCACGGTTTCTAAATTA 58.442 39.130 0.00 0.00 0.00 1.40
166 167 5.172934 TCTGACGCACGGTTTCTAAATTAT 58.827 37.500 0.00 0.00 0.00 1.28
167 168 5.062934 TCTGACGCACGGTTTCTAAATTATG 59.937 40.000 0.00 0.00 0.00 1.90
168 169 4.691685 TGACGCACGGTTTCTAAATTATGT 59.308 37.500 0.00 0.00 0.00 2.29
169 170 5.179742 TGACGCACGGTTTCTAAATTATGTT 59.820 36.000 0.00 0.00 0.00 2.71
170 171 6.004408 ACGCACGGTTTCTAAATTATGTTT 57.996 33.333 0.00 0.00 0.00 2.83
171 172 6.440436 ACGCACGGTTTCTAAATTATGTTTT 58.560 32.000 0.00 0.00 0.00 2.43
172 173 6.579666 ACGCACGGTTTCTAAATTATGTTTTC 59.420 34.615 0.00 0.00 0.00 2.29
173 174 6.579292 CGCACGGTTTCTAAATTATGTTTTCA 59.421 34.615 0.00 0.00 0.00 2.69
174 175 7.272515 CGCACGGTTTCTAAATTATGTTTTCAT 59.727 33.333 0.00 0.00 43.60 2.57
175 176 8.921670 GCACGGTTTCTAAATTATGTTTTCATT 58.078 29.630 0.00 0.00 41.25 2.57
367 369 0.429736 CGACTACGTGTGAAGCAACG 59.570 55.000 0.00 0.00 34.56 4.10
387 389 3.877508 ACGAGCATAGCAATCCCTTTTAC 59.122 43.478 0.00 0.00 0.00 2.01
388 390 4.130118 CGAGCATAGCAATCCCTTTTACT 58.870 43.478 0.00 0.00 0.00 2.24
389 391 4.212214 CGAGCATAGCAATCCCTTTTACTC 59.788 45.833 0.00 0.00 0.00 2.59
390 392 4.464947 AGCATAGCAATCCCTTTTACTCC 58.535 43.478 0.00 0.00 0.00 3.85
393 395 3.653835 AGCAATCCCTTTTACTCCCTC 57.346 47.619 0.00 0.00 0.00 4.30
394 396 2.242452 AGCAATCCCTTTTACTCCCTCC 59.758 50.000 0.00 0.00 0.00 4.30
395 397 2.025321 GCAATCCCTTTTACTCCCTCCA 60.025 50.000 0.00 0.00 0.00 3.86
396 398 3.373110 GCAATCCCTTTTACTCCCTCCAT 60.373 47.826 0.00 0.00 0.00 3.41
397 399 4.871822 CAATCCCTTTTACTCCCTCCATT 58.128 43.478 0.00 0.00 0.00 3.16
398 400 5.272402 CAATCCCTTTTACTCCCTCCATTT 58.728 41.667 0.00 0.00 0.00 2.32
399 401 5.552430 ATCCCTTTTACTCCCTCCATTTT 57.448 39.130 0.00 0.00 0.00 1.82
400 402 5.348259 TCCCTTTTACTCCCTCCATTTTT 57.652 39.130 0.00 0.00 0.00 1.94
401 403 5.083821 TCCCTTTTACTCCCTCCATTTTTG 58.916 41.667 0.00 0.00 0.00 2.44
402 404 4.838423 CCCTTTTACTCCCTCCATTTTTGT 59.162 41.667 0.00 0.00 0.00 2.83
403 405 6.014012 CCCTTTTACTCCCTCCATTTTTGTA 58.986 40.000 0.00 0.00 0.00 2.41
404 406 6.667848 CCCTTTTACTCCCTCCATTTTTGTAT 59.332 38.462 0.00 0.00 0.00 2.29
405 407 7.837187 CCCTTTTACTCCCTCCATTTTTGTATA 59.163 37.037 0.00 0.00 0.00 1.47
406 408 8.683615 CCTTTTACTCCCTCCATTTTTGTATAC 58.316 37.037 0.00 0.00 0.00 1.47
407 409 9.238368 CTTTTACTCCCTCCATTTTTGTATACA 57.762 33.333 0.08 0.08 0.00 2.29
408 410 9.589461 TTTTACTCCCTCCATTTTTGTATACAA 57.411 29.630 14.35 14.35 0.00 2.41
409 411 8.801882 TTACTCCCTCCATTTTTGTATACAAG 57.198 34.615 17.36 6.89 37.15 3.16
410 412 7.027874 ACTCCCTCCATTTTTGTATACAAGA 57.972 36.000 17.36 11.29 37.15 3.02
411 413 6.884836 ACTCCCTCCATTTTTGTATACAAGAC 59.115 38.462 17.36 0.00 37.15 3.01
412 414 6.184789 TCCCTCCATTTTTGTATACAAGACC 58.815 40.000 17.36 0.00 37.15 3.85
413 415 5.949354 CCCTCCATTTTTGTATACAAGACCA 59.051 40.000 17.36 1.16 37.15 4.02
414 416 6.127730 CCCTCCATTTTTGTATACAAGACCAC 60.128 42.308 17.36 0.00 37.15 4.16
415 417 6.432783 CCTCCATTTTTGTATACAAGACCACA 59.567 38.462 17.36 0.06 37.15 4.17
416 418 7.040062 CCTCCATTTTTGTATACAAGACCACAA 60.040 37.037 17.36 6.27 37.15 3.33
417 419 8.239038 TCCATTTTTGTATACAAGACCACAAA 57.761 30.769 17.36 13.98 38.68 2.83
418 420 8.138712 TCCATTTTTGTATACAAGACCACAAAC 58.861 33.333 17.36 0.00 39.78 2.93
419 421 8.141268 CCATTTTTGTATACAAGACCACAAACT 58.859 33.333 17.36 0.64 39.78 2.66
420 422 9.180678 CATTTTTGTATACAAGACCACAAACTC 57.819 33.333 17.36 0.00 39.78 3.01
421 423 7.867305 TTTTGTATACAAGACCACAAACTCA 57.133 32.000 17.36 0.00 39.78 3.41
422 424 7.490962 TTTGTATACAAGACCACAAACTCAG 57.509 36.000 17.36 0.00 36.31 3.35
423 425 6.413783 TGTATACAAGACCACAAACTCAGA 57.586 37.500 2.20 0.00 0.00 3.27
424 426 7.004555 TGTATACAAGACCACAAACTCAGAT 57.995 36.000 2.20 0.00 0.00 2.90
425 427 7.450074 TGTATACAAGACCACAAACTCAGATT 58.550 34.615 2.20 0.00 0.00 2.40
426 428 8.590204 TGTATACAAGACCACAAACTCAGATTA 58.410 33.333 2.20 0.00 0.00 1.75
427 429 7.907214 ATACAAGACCACAAACTCAGATTAC 57.093 36.000 0.00 0.00 0.00 1.89
428 430 5.680619 ACAAGACCACAAACTCAGATTACA 58.319 37.500 0.00 0.00 0.00 2.41
429 431 5.760253 ACAAGACCACAAACTCAGATTACAG 59.240 40.000 0.00 0.00 0.00 2.74
430 432 4.899502 AGACCACAAACTCAGATTACAGG 58.100 43.478 0.00 0.00 0.00 4.00
431 433 4.348168 AGACCACAAACTCAGATTACAGGT 59.652 41.667 0.00 0.00 0.00 4.00
432 434 5.542635 AGACCACAAACTCAGATTACAGGTA 59.457 40.000 0.00 0.00 0.00 3.08
433 435 6.042781 AGACCACAAACTCAGATTACAGGTAA 59.957 38.462 0.00 0.00 0.00 2.85
434 436 5.995897 ACCACAAACTCAGATTACAGGTAAC 59.004 40.000 0.00 0.00 0.00 2.50
435 437 5.995282 CCACAAACTCAGATTACAGGTAACA 59.005 40.000 0.00 0.00 41.41 2.41
436 438 6.485313 CCACAAACTCAGATTACAGGTAACAA 59.515 38.462 0.00 0.00 41.41 2.83
437 439 7.174946 CCACAAACTCAGATTACAGGTAACAAT 59.825 37.037 0.00 0.00 41.41 2.71
438 440 8.017373 CACAAACTCAGATTACAGGTAACAATG 58.983 37.037 0.00 0.00 41.41 2.82
439 441 7.719633 ACAAACTCAGATTACAGGTAACAATGT 59.280 33.333 0.00 0.00 41.41 2.71
440 442 9.214957 CAAACTCAGATTACAGGTAACAATGTA 57.785 33.333 0.00 0.00 41.41 2.29
441 443 9.787435 AAACTCAGATTACAGGTAACAATGTAA 57.213 29.630 0.74 0.74 43.80 2.41
442 444 9.787435 AACTCAGATTACAGGTAACAATGTAAA 57.213 29.630 2.28 0.00 43.14 2.01
443 445 9.787435 ACTCAGATTACAGGTAACAATGTAAAA 57.213 29.630 2.28 0.00 43.14 1.52
452 454 9.430623 ACAGGTAACAATGTAAAATTTAATGCC 57.569 29.630 0.00 0.00 41.41 4.40
453 455 9.651913 CAGGTAACAATGTAAAATTTAATGCCT 57.348 29.630 0.00 0.00 41.41 4.75
454 456 9.651913 AGGTAACAATGTAAAATTTAATGCCTG 57.348 29.630 0.00 0.00 41.41 4.85
455 457 9.430623 GGTAACAATGTAAAATTTAATGCCTGT 57.569 29.630 0.00 0.00 0.00 4.00
473 475 9.830975 AATGCCTGTTTTATAAGTCAACTTTTT 57.169 25.926 0.00 0.00 37.40 1.94
502 504 8.657074 TGTTTACTGGGATCATTAATACTTCG 57.343 34.615 0.00 0.00 0.00 3.79
503 505 7.225931 TGTTTACTGGGATCATTAATACTTCGC 59.774 37.037 0.00 0.00 0.00 4.70
504 506 5.290493 ACTGGGATCATTAATACTTCGCA 57.710 39.130 0.00 9.41 0.00 5.10
505 507 5.869579 ACTGGGATCATTAATACTTCGCAT 58.130 37.500 9.92 2.38 0.00 4.73
506 508 5.702670 ACTGGGATCATTAATACTTCGCATG 59.297 40.000 9.92 0.00 0.00 4.06
507 509 4.455533 TGGGATCATTAATACTTCGCATGC 59.544 41.667 7.91 7.91 0.00 4.06
508 510 4.455533 GGGATCATTAATACTTCGCATGCA 59.544 41.667 19.57 1.73 0.00 3.96
509 511 5.124457 GGGATCATTAATACTTCGCATGCAT 59.876 40.000 19.57 0.00 0.00 3.96
510 512 6.025896 GGATCATTAATACTTCGCATGCATG 58.974 40.000 22.70 22.70 0.00 4.06
524 526 3.909430 CATGCATGCAAAGAAACTGAGT 58.091 40.909 26.68 0.00 0.00 3.41
525 527 3.358707 TGCATGCAAAGAAACTGAGTG 57.641 42.857 20.30 0.00 0.00 3.51
526 528 2.034939 TGCATGCAAAGAAACTGAGTGG 59.965 45.455 20.30 0.00 0.00 4.00
527 529 2.294233 GCATGCAAAGAAACTGAGTGGA 59.706 45.455 14.21 0.00 0.00 4.02
528 530 3.611057 GCATGCAAAGAAACTGAGTGGAG 60.611 47.826 14.21 0.00 0.00 3.86
529 531 2.575532 TGCAAAGAAACTGAGTGGAGG 58.424 47.619 0.00 0.00 0.00 4.30
530 532 2.172505 TGCAAAGAAACTGAGTGGAGGA 59.827 45.455 0.00 0.00 0.00 3.71
531 533 3.214328 GCAAAGAAACTGAGTGGAGGAA 58.786 45.455 0.00 0.00 0.00 3.36
532 534 3.251972 GCAAAGAAACTGAGTGGAGGAAG 59.748 47.826 0.00 0.00 0.00 3.46
533 535 4.455606 CAAAGAAACTGAGTGGAGGAAGT 58.544 43.478 0.00 0.00 0.00 3.01
534 536 5.611374 CAAAGAAACTGAGTGGAGGAAGTA 58.389 41.667 0.00 0.00 0.00 2.24
535 537 5.476091 AAGAAACTGAGTGGAGGAAGTAG 57.524 43.478 0.00 0.00 0.00 2.57
536 538 3.259625 AGAAACTGAGTGGAGGAAGTAGC 59.740 47.826 0.00 0.00 0.00 3.58
537 539 2.614134 ACTGAGTGGAGGAAGTAGCT 57.386 50.000 0.00 0.00 0.00 3.32
538 540 2.175202 ACTGAGTGGAGGAAGTAGCTG 58.825 52.381 0.00 0.00 0.00 4.24
539 541 2.225142 ACTGAGTGGAGGAAGTAGCTGA 60.225 50.000 0.00 0.00 0.00 4.26
540 542 2.165437 CTGAGTGGAGGAAGTAGCTGAC 59.835 54.545 0.00 0.00 0.00 3.51
541 543 2.225142 TGAGTGGAGGAAGTAGCTGACT 60.225 50.000 0.00 0.00 41.56 3.41
542 544 2.165437 GAGTGGAGGAAGTAGCTGACTG 59.835 54.545 0.00 0.00 38.87 3.51
543 545 1.896465 GTGGAGGAAGTAGCTGACTGT 59.104 52.381 0.00 0.00 38.87 3.55
544 546 2.094442 GTGGAGGAAGTAGCTGACTGTC 60.094 54.545 0.00 0.00 38.87 3.51
545 547 2.171840 GGAGGAAGTAGCTGACTGTCA 58.828 52.381 10.50 10.50 38.87 3.58
546 548 2.763448 GGAGGAAGTAGCTGACTGTCAT 59.237 50.000 11.45 0.00 38.87 3.06
547 549 3.196685 GGAGGAAGTAGCTGACTGTCATT 59.803 47.826 11.45 1.95 38.87 2.57
548 550 4.402793 GGAGGAAGTAGCTGACTGTCATTA 59.597 45.833 11.45 4.66 38.87 1.90
549 551 5.069781 GGAGGAAGTAGCTGACTGTCATTAT 59.930 44.000 11.45 3.10 38.87 1.28
550 552 5.911752 AGGAAGTAGCTGACTGTCATTATG 58.088 41.667 11.45 0.53 38.87 1.90
551 553 5.658634 AGGAAGTAGCTGACTGTCATTATGA 59.341 40.000 11.45 0.00 38.87 2.15
563 565 3.305964 GTCATTATGACTGCATGCATGC 58.694 45.455 38.71 38.71 44.66 4.06
578 580 5.653507 CATGCATGCAACTATTAAACAGGT 58.346 37.500 26.68 0.00 0.00 4.00
579 581 5.720371 TGCATGCAACTATTAAACAGGTT 57.280 34.783 20.30 0.00 0.00 3.50
580 582 5.468592 TGCATGCAACTATTAAACAGGTTG 58.531 37.500 20.30 0.00 41.07 3.77
581 583 5.010516 TGCATGCAACTATTAAACAGGTTGT 59.989 36.000 20.30 0.00 40.49 3.32
582 584 5.925969 GCATGCAACTATTAAACAGGTTGTT 59.074 36.000 14.21 0.00 43.41 2.83
583 585 7.087639 GCATGCAACTATTAAACAGGTTGTTA 58.912 34.615 14.21 0.00 40.14 2.41
584 586 7.273381 GCATGCAACTATTAAACAGGTTGTTAG 59.727 37.037 14.21 0.00 40.14 2.34
585 587 7.811117 TGCAACTATTAAACAGGTTGTTAGT 57.189 32.000 0.00 0.00 40.14 2.24
586 588 8.905660 TGCAACTATTAAACAGGTTGTTAGTA 57.094 30.769 0.00 0.00 40.14 1.82
587 589 8.776470 TGCAACTATTAAACAGGTTGTTAGTAC 58.224 33.333 0.00 0.00 40.14 2.73
588 590 7.953710 GCAACTATTAAACAGGTTGTTAGTACG 59.046 37.037 0.00 0.00 40.14 3.67
589 591 9.195411 CAACTATTAAACAGGTTGTTAGTACGA 57.805 33.333 0.00 0.00 40.14 3.43
590 592 8.976986 ACTATTAAACAGGTTGTTAGTACGAG 57.023 34.615 0.00 0.00 40.14 4.18
591 593 8.796475 ACTATTAAACAGGTTGTTAGTACGAGA 58.204 33.333 0.00 0.00 40.14 4.04
592 594 9.630098 CTATTAAACAGGTTGTTAGTACGAGAA 57.370 33.333 0.00 0.00 40.14 2.87
593 595 8.891671 ATTAAACAGGTTGTTAGTACGAGAAA 57.108 30.769 0.00 0.00 40.14 2.52
594 596 8.715191 TTAAACAGGTTGTTAGTACGAGAAAA 57.285 30.769 0.00 0.00 40.14 2.29
595 597 7.797038 AAACAGGTTGTTAGTACGAGAAAAT 57.203 32.000 0.00 0.00 40.14 1.82
596 598 8.891671 AAACAGGTTGTTAGTACGAGAAAATA 57.108 30.769 0.00 0.00 40.14 1.40
597 599 9.498176 AAACAGGTTGTTAGTACGAGAAAATAT 57.502 29.630 0.00 0.00 40.14 1.28
598 600 8.699283 ACAGGTTGTTAGTACGAGAAAATATC 57.301 34.615 0.00 0.00 0.00 1.63
599 601 8.308931 ACAGGTTGTTAGTACGAGAAAATATCA 58.691 33.333 0.00 0.00 0.00 2.15
600 602 9.314321 CAGGTTGTTAGTACGAGAAAATATCAT 57.686 33.333 0.00 0.00 0.00 2.45
601 603 9.886132 AGGTTGTTAGTACGAGAAAATATCATT 57.114 29.630 0.00 0.00 0.00 2.57
612 614 9.774742 ACGAGAAAATATCATTAACTTTGCTTC 57.225 29.630 0.00 0.00 0.00 3.86
613 615 8.937932 CGAGAAAATATCATTAACTTTGCTTCG 58.062 33.333 0.00 0.00 0.00 3.79
614 616 9.988350 GAGAAAATATCATTAACTTTGCTTCGA 57.012 29.630 0.00 0.00 0.00 3.71
627 629 7.251704 ACTTTGCTTCGATTACTATTGATGG 57.748 36.000 0.00 0.00 0.00 3.51
628 630 5.673337 TTGCTTCGATTACTATTGATGGC 57.327 39.130 0.00 0.00 0.00 4.40
629 631 4.065088 TGCTTCGATTACTATTGATGGCC 58.935 43.478 0.00 0.00 0.00 5.36
630 632 4.202357 TGCTTCGATTACTATTGATGGCCT 60.202 41.667 3.32 0.00 0.00 5.19
631 633 4.757149 GCTTCGATTACTATTGATGGCCTT 59.243 41.667 3.32 0.00 0.00 4.35
632 634 5.334414 GCTTCGATTACTATTGATGGCCTTG 60.334 44.000 3.32 0.00 0.00 3.61
633 635 5.290493 TCGATTACTATTGATGGCCTTGT 57.710 39.130 3.32 0.00 0.00 3.16
634 636 6.413783 TCGATTACTATTGATGGCCTTGTA 57.586 37.500 3.32 0.00 0.00 2.41
635 637 7.004555 TCGATTACTATTGATGGCCTTGTAT 57.995 36.000 3.32 0.00 0.00 2.29
636 638 8.129496 TCGATTACTATTGATGGCCTTGTATA 57.871 34.615 3.32 0.00 0.00 1.47
637 639 8.251026 TCGATTACTATTGATGGCCTTGTATAG 58.749 37.037 3.32 9.29 0.00 1.31
638 640 8.251026 CGATTACTATTGATGGCCTTGTATAGA 58.749 37.037 17.12 3.64 0.00 1.98
640 642 9.896645 ATTACTATTGATGGCCTTGTATAGATG 57.103 33.333 17.12 0.00 0.00 2.90
641 643 6.176183 ACTATTGATGGCCTTGTATAGATGC 58.824 40.000 17.12 0.00 0.00 3.91
642 644 4.436113 TTGATGGCCTTGTATAGATGCA 57.564 40.909 3.32 0.00 0.00 3.96
643 645 4.436113 TGATGGCCTTGTATAGATGCAA 57.564 40.909 3.32 0.00 0.00 4.08
644 646 4.790937 TGATGGCCTTGTATAGATGCAAA 58.209 39.130 3.32 0.00 32.12 3.68
645 647 5.199723 TGATGGCCTTGTATAGATGCAAAA 58.800 37.500 3.32 0.00 32.12 2.44
646 648 5.834742 TGATGGCCTTGTATAGATGCAAAAT 59.165 36.000 3.32 0.00 32.12 1.82
647 649 5.518848 TGGCCTTGTATAGATGCAAAATG 57.481 39.130 3.32 0.00 32.12 2.32
648 650 4.955450 TGGCCTTGTATAGATGCAAAATGT 59.045 37.500 3.32 0.00 32.12 2.71
649 651 6.125719 TGGCCTTGTATAGATGCAAAATGTA 58.874 36.000 3.32 0.00 32.12 2.29
650 652 6.777091 TGGCCTTGTATAGATGCAAAATGTAT 59.223 34.615 3.32 0.00 32.12 2.29
651 653 7.941790 TGGCCTTGTATAGATGCAAAATGTATA 59.058 33.333 3.32 0.00 32.12 1.47
652 654 8.960591 GGCCTTGTATAGATGCAAAATGTATAT 58.039 33.333 0.00 0.00 32.12 0.86
663 665 9.994432 GATGCAAAATGTATATTCCATAGTAGC 57.006 33.333 0.00 0.00 0.00 3.58
664 666 8.335532 TGCAAAATGTATATTCCATAGTAGCC 57.664 34.615 0.00 0.00 0.00 3.93
665 667 8.163408 TGCAAAATGTATATTCCATAGTAGCCT 58.837 33.333 0.00 0.00 0.00 4.58
666 668 9.014297 GCAAAATGTATATTCCATAGTAGCCTT 57.986 33.333 0.00 0.00 0.00 4.35
684 686 8.164070 AGTAGCCTTGTATATAAAAATGGAGGG 58.836 37.037 0.00 0.00 0.00 4.30
685 687 6.314917 AGCCTTGTATATAAAAATGGAGGGG 58.685 40.000 0.00 0.00 0.00 4.79
686 688 5.480422 GCCTTGTATATAAAAATGGAGGGGG 59.520 44.000 0.00 0.00 0.00 5.40
687 689 6.620429 CCTTGTATATAAAAATGGAGGGGGT 58.380 40.000 0.00 0.00 0.00 4.95
688 690 7.695806 GCCTTGTATATAAAAATGGAGGGGGTA 60.696 40.741 0.00 0.00 0.00 3.69
707 709 4.638865 GGGTAATAGACTTGGTGCGAAAAT 59.361 41.667 0.00 0.00 0.00 1.82
709 711 6.238293 GGGTAATAGACTTGGTGCGAAAATAC 60.238 42.308 0.00 0.00 0.00 1.89
711 713 2.433436 AGACTTGGTGCGAAAATACCC 58.567 47.619 0.00 0.00 36.10 3.69
817 819 3.907894 TGGTGCTCGGTTTCAAATTAC 57.092 42.857 0.00 0.00 0.00 1.89
825 827 5.332280 GCTCGGTTTCAAATTACTTTTGCAC 60.332 40.000 0.00 0.00 43.68 4.57
848 850 5.995282 ACTAATGACTTTGTCCGAAATGACA 59.005 36.000 0.00 0.00 43.26 3.58
907 1778 3.063452 CCGTCCACTAAATTTCCATCACG 59.937 47.826 0.00 0.00 0.00 4.35
954 1825 1.561643 TCACTCCCTTCGAGCAGATT 58.438 50.000 0.00 0.00 43.01 2.40
956 1827 0.457851 ACTCCCTTCGAGCAGATTCG 59.542 55.000 0.00 0.00 43.01 3.34
993 1864 1.271707 ACACCCAATTCCTAACACCGG 60.272 52.381 0.00 0.00 0.00 5.28
1031 1911 4.824515 CCTCGTCCTCCTCGCCCT 62.825 72.222 0.00 0.00 0.00 5.19
1032 1912 3.213402 CTCGTCCTCCTCGCCCTC 61.213 72.222 0.00 0.00 0.00 4.30
1033 1913 4.816984 TCGTCCTCCTCGCCCTCC 62.817 72.222 0.00 0.00 0.00 4.30
1034 1914 4.824515 CGTCCTCCTCGCCCTCCT 62.825 72.222 0.00 0.00 0.00 3.69
1035 1915 2.835895 GTCCTCCTCGCCCTCCTC 60.836 72.222 0.00 0.00 0.00 3.71
1036 1916 4.507916 TCCTCCTCGCCCTCCTCG 62.508 72.222 0.00 0.00 0.00 4.63
1122 2002 2.844348 ACCTATCCCAAACGTGAAGGAT 59.156 45.455 15.43 15.43 41.90 3.24
1202 2082 2.359478 GTGGTTTCGCCGGGTCAT 60.359 61.111 2.18 0.00 41.21 3.06
1205 2085 3.053291 GTTTCGCCGGGTCATGCA 61.053 61.111 2.18 0.00 0.00 3.96
1206 2086 2.045438 TTTCGCCGGGTCATGCAT 60.045 55.556 2.18 0.00 0.00 3.96
1249 2129 1.405526 GCATGAACTACCGCCTCTTCA 60.406 52.381 0.00 0.00 0.00 3.02
1263 2143 1.101635 TCTTCATCGACGCGGAGGAT 61.102 55.000 12.47 7.05 0.00 3.24
1372 2252 1.134367 CGAACTAATCTGTCCCTCGCA 59.866 52.381 0.00 0.00 0.00 5.10
1383 2263 2.965147 TGTCCCTCGCATCTCATGAATA 59.035 45.455 0.00 0.00 0.00 1.75
1564 2454 2.557490 GACGAGGGAGTACTCAAGTGTT 59.443 50.000 23.91 3.70 37.34 3.32
1573 2463 3.938963 AGTACTCAAGTGTTGTGTGGTTG 59.061 43.478 4.95 0.00 37.84 3.77
1638 2528 7.710896 ACTACTCCGGATAGTGTATTTGTTAC 58.289 38.462 19.48 0.00 31.54 2.50
1694 2584 3.668141 AGATTGTTGTGATGGCCCATA 57.332 42.857 0.00 0.00 0.00 2.74
1695 2585 3.979911 AGATTGTTGTGATGGCCCATAA 58.020 40.909 0.00 0.00 0.00 1.90
1728 2624 4.425180 TGTGTACTAAAAGAGTTGGGCA 57.575 40.909 0.00 0.00 39.81 5.36
1907 2805 7.307337 CGGTGTCATTCGATTCATCATGAAATA 60.307 37.037 3.63 0.00 40.12 1.40
1998 2927 7.696992 ACACCTTATATTTTGAAACCGACAT 57.303 32.000 0.00 0.00 0.00 3.06
2112 3041 8.141909 CGATTCTAGGTTATCTGGTAATCAACA 58.858 37.037 0.00 0.00 0.00 3.33
2114 3043 6.802608 TCTAGGTTATCTGGTAATCAACACG 58.197 40.000 0.00 0.00 0.00 4.49
2115 3044 4.189231 AGGTTATCTGGTAATCAACACGC 58.811 43.478 0.00 0.00 0.00 5.34
2148 3077 9.638239 GCAGGAAATTTTTCTACATAAATGACA 57.362 29.630 3.28 0.00 37.35 3.58
2228 3166 7.975058 TGTGCATGAGGTTGATATGTTTTTATG 59.025 33.333 0.00 0.00 0.00 1.90
2232 3170 7.459795 TGAGGTTGATATGTTTTTATGTGCA 57.540 32.000 0.00 0.00 0.00 4.57
2252 3190 4.680567 TGCATGTTGTTGTCGATTGATTTG 59.319 37.500 0.00 0.00 0.00 2.32
2343 3282 4.843728 CCTCAAAATTAGGGACTGTAGCA 58.156 43.478 0.00 0.00 41.52 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.105057 ACAATGTACCAACTCCCCTTAACA 59.895 41.667 0.00 0.00 0.00 2.41
1 2 4.659115 ACAATGTACCAACTCCCCTTAAC 58.341 43.478 0.00 0.00 0.00 2.01
2 3 4.563993 CGACAATGTACCAACTCCCCTTAA 60.564 45.833 0.00 0.00 0.00 1.85
3 4 3.055675 CGACAATGTACCAACTCCCCTTA 60.056 47.826 0.00 0.00 0.00 2.69
4 5 2.290071 CGACAATGTACCAACTCCCCTT 60.290 50.000 0.00 0.00 0.00 3.95
5 6 1.278127 CGACAATGTACCAACTCCCCT 59.722 52.381 0.00 0.00 0.00 4.79
6 7 1.002773 ACGACAATGTACCAACTCCCC 59.997 52.381 0.00 0.00 0.00 4.81
7 8 2.467566 ACGACAATGTACCAACTCCC 57.532 50.000 0.00 0.00 0.00 4.30
8 9 3.120786 CGAAACGACAATGTACCAACTCC 60.121 47.826 0.00 0.00 0.00 3.85
9 10 3.663493 GCGAAACGACAATGTACCAACTC 60.663 47.826 0.00 0.00 0.00 3.01
10 11 2.222445 GCGAAACGACAATGTACCAACT 59.778 45.455 0.00 0.00 0.00 3.16
11 12 2.032722 TGCGAAACGACAATGTACCAAC 60.033 45.455 0.00 0.00 0.00 3.77
12 13 2.210961 TGCGAAACGACAATGTACCAA 58.789 42.857 0.00 0.00 0.00 3.67
13 14 1.867166 TGCGAAACGACAATGTACCA 58.133 45.000 0.00 0.00 0.00 3.25
14 15 2.769376 CATGCGAAACGACAATGTACC 58.231 47.619 0.00 0.00 0.00 3.34
15 16 2.166007 GCATGCGAAACGACAATGTAC 58.834 47.619 0.00 0.00 0.00 2.90
16 17 1.801178 TGCATGCGAAACGACAATGTA 59.199 42.857 14.09 0.00 0.00 2.29
17 18 0.590682 TGCATGCGAAACGACAATGT 59.409 45.000 14.09 0.00 0.00 2.71
18 19 1.684142 TTGCATGCGAAACGACAATG 58.316 45.000 14.09 0.00 0.00 2.82
19 20 2.634982 ATTGCATGCGAAACGACAAT 57.365 40.000 12.68 0.41 0.00 2.71
20 21 2.049959 CAATTGCATGCGAAACGACAA 58.950 42.857 12.68 0.00 0.00 3.18
21 22 1.265365 TCAATTGCATGCGAAACGACA 59.735 42.857 12.68 0.00 0.00 4.35
22 23 1.962412 TCAATTGCATGCGAAACGAC 58.038 45.000 12.68 0.00 0.00 4.34
23 24 2.917701 ATCAATTGCATGCGAAACGA 57.082 40.000 12.68 9.11 0.00 3.85
24 25 3.482274 CCAAATCAATTGCATGCGAAACG 60.482 43.478 12.68 3.49 37.73 3.60
25 26 3.725600 GCCAAATCAATTGCATGCGAAAC 60.726 43.478 12.68 0.00 37.73 2.78
26 27 2.415857 GCCAAATCAATTGCATGCGAAA 59.584 40.909 12.68 1.69 37.73 3.46
27 28 2.001159 GCCAAATCAATTGCATGCGAA 58.999 42.857 12.68 8.35 37.73 4.70
28 29 1.067071 TGCCAAATCAATTGCATGCGA 60.067 42.857 10.79 10.79 37.73 5.10
29 30 1.061421 GTGCCAAATCAATTGCATGCG 59.939 47.619 14.09 0.00 37.73 4.73
30 31 1.061421 CGTGCCAAATCAATTGCATGC 59.939 47.619 11.82 11.82 37.73 4.06
31 32 2.608268 TCGTGCCAAATCAATTGCATG 58.392 42.857 0.00 0.00 37.73 4.06
32 33 3.316071 TTCGTGCCAAATCAATTGCAT 57.684 38.095 0.00 0.00 37.73 3.96
33 34 2.808523 TTCGTGCCAAATCAATTGCA 57.191 40.000 0.00 0.00 37.73 4.08
34 35 4.465040 TTTTTCGTGCCAAATCAATTGC 57.535 36.364 0.00 0.00 37.73 3.56
52 53 8.882557 TTAGGTCGGTTTAAATAGGGATTTTT 57.117 30.769 0.00 0.00 36.62 1.94
53 54 8.111545 ACTTAGGTCGGTTTAAATAGGGATTTT 58.888 33.333 0.00 0.00 36.62 1.82
54 55 7.636579 ACTTAGGTCGGTTTAAATAGGGATTT 58.363 34.615 0.00 0.00 38.79 2.17
55 56 7.204243 ACTTAGGTCGGTTTAAATAGGGATT 57.796 36.000 0.00 0.00 0.00 3.01
56 57 6.819947 ACTTAGGTCGGTTTAAATAGGGAT 57.180 37.500 0.00 0.00 0.00 3.85
57 58 7.732222 TTACTTAGGTCGGTTTAAATAGGGA 57.268 36.000 0.00 0.00 0.00 4.20
58 59 8.833493 CAATTACTTAGGTCGGTTTAAATAGGG 58.167 37.037 0.00 0.00 0.00 3.53
59 60 8.340443 GCAATTACTTAGGTCGGTTTAAATAGG 58.660 37.037 0.00 0.00 0.00 2.57
60 61 8.885722 TGCAATTACTTAGGTCGGTTTAAATAG 58.114 33.333 0.00 0.00 0.00 1.73
61 62 8.789825 TGCAATTACTTAGGTCGGTTTAAATA 57.210 30.769 0.00 0.00 0.00 1.40
62 63 7.690952 TGCAATTACTTAGGTCGGTTTAAAT 57.309 32.000 0.00 0.00 0.00 1.40
63 64 7.175293 ACATGCAATTACTTAGGTCGGTTTAAA 59.825 33.333 0.00 0.00 0.00 1.52
64 65 6.655848 ACATGCAATTACTTAGGTCGGTTTAA 59.344 34.615 0.00 0.00 0.00 1.52
65 66 6.174760 ACATGCAATTACTTAGGTCGGTTTA 58.825 36.000 0.00 0.00 0.00 2.01
66 67 5.007682 ACATGCAATTACTTAGGTCGGTTT 58.992 37.500 0.00 0.00 0.00 3.27
67 68 4.585879 ACATGCAATTACTTAGGTCGGTT 58.414 39.130 0.00 0.00 0.00 4.44
68 69 4.216411 ACATGCAATTACTTAGGTCGGT 57.784 40.909 0.00 0.00 0.00 4.69
69 70 7.956420 TTATACATGCAATTACTTAGGTCGG 57.044 36.000 0.00 0.00 0.00 4.79
70 71 9.811655 CAATTATACATGCAATTACTTAGGTCG 57.188 33.333 0.00 0.00 0.00 4.79
104 105 9.685276 TCAAGTCATTAATGTCATGAATTAGGT 57.315 29.630 15.11 0.00 36.95 3.08
123 124 9.611284 CGTCAGAATAATTTGAAAATCAAGTCA 57.389 29.630 0.00 0.00 37.70 3.41
124 125 8.578769 GCGTCAGAATAATTTGAAAATCAAGTC 58.421 33.333 0.00 0.00 37.70 3.01
125 126 8.081633 TGCGTCAGAATAATTTGAAAATCAAGT 58.918 29.630 0.00 0.00 37.70 3.16
126 127 8.368126 GTGCGTCAGAATAATTTGAAAATCAAG 58.632 33.333 0.00 0.00 37.70 3.02
127 128 7.060518 CGTGCGTCAGAATAATTTGAAAATCAA 59.939 33.333 0.00 0.00 34.03 2.57
128 129 6.522855 CGTGCGTCAGAATAATTTGAAAATCA 59.477 34.615 0.00 0.00 0.00 2.57
129 130 6.021468 CCGTGCGTCAGAATAATTTGAAAATC 60.021 38.462 0.00 0.00 0.00 2.17
130 131 5.799936 CCGTGCGTCAGAATAATTTGAAAAT 59.200 36.000 0.00 0.00 0.00 1.82
131 132 5.150683 CCGTGCGTCAGAATAATTTGAAAA 58.849 37.500 0.00 0.00 0.00 2.29
132 133 4.214545 ACCGTGCGTCAGAATAATTTGAAA 59.785 37.500 0.00 0.00 0.00 2.69
133 134 3.749088 ACCGTGCGTCAGAATAATTTGAA 59.251 39.130 0.00 0.00 0.00 2.69
134 135 3.331150 ACCGTGCGTCAGAATAATTTGA 58.669 40.909 0.00 0.00 0.00 2.69
135 136 3.740044 ACCGTGCGTCAGAATAATTTG 57.260 42.857 0.00 0.00 0.00 2.32
136 137 4.454504 AGAAACCGTGCGTCAGAATAATTT 59.545 37.500 0.00 0.00 0.00 1.82
137 138 4.000988 AGAAACCGTGCGTCAGAATAATT 58.999 39.130 0.00 0.00 0.00 1.40
138 139 3.596214 AGAAACCGTGCGTCAGAATAAT 58.404 40.909 0.00 0.00 0.00 1.28
139 140 3.034721 AGAAACCGTGCGTCAGAATAA 57.965 42.857 0.00 0.00 0.00 1.40
140 141 2.736144 AGAAACCGTGCGTCAGAATA 57.264 45.000 0.00 0.00 0.00 1.75
141 142 2.736144 TAGAAACCGTGCGTCAGAAT 57.264 45.000 0.00 0.00 0.00 2.40
142 143 2.512485 TTAGAAACCGTGCGTCAGAA 57.488 45.000 0.00 0.00 0.00 3.02
143 144 2.512485 TTTAGAAACCGTGCGTCAGA 57.488 45.000 0.00 0.00 0.00 3.27
144 145 3.806316 AATTTAGAAACCGTGCGTCAG 57.194 42.857 0.00 0.00 0.00 3.51
145 146 4.691685 ACATAATTTAGAAACCGTGCGTCA 59.308 37.500 0.00 0.00 0.00 4.35
146 147 5.212589 ACATAATTTAGAAACCGTGCGTC 57.787 39.130 0.00 0.00 0.00 5.19
147 148 5.616488 AACATAATTTAGAAACCGTGCGT 57.384 34.783 0.00 0.00 0.00 5.24
148 149 6.579292 TGAAAACATAATTTAGAAACCGTGCG 59.421 34.615 0.00 0.00 0.00 5.34
149 150 7.861176 TGAAAACATAATTTAGAAACCGTGC 57.139 32.000 0.00 0.00 0.00 5.34
199 200 7.726291 TTGATCCAAATCAAACCTTTGGTAGTA 59.274 33.333 12.98 0.00 46.41 1.82
362 364 0.308993 GGGATTGCTATGCTCGTTGC 59.691 55.000 0.00 0.00 43.25 4.17
367 369 4.517075 GGAGTAAAAGGGATTGCTATGCTC 59.483 45.833 0.00 0.00 0.00 4.26
371 373 4.104897 GGAGGGAGTAAAAGGGATTGCTAT 59.895 45.833 0.00 0.00 0.00 2.97
387 389 6.318900 GGTCTTGTATACAAAAATGGAGGGAG 59.681 42.308 18.55 3.47 35.15 4.30
388 390 6.184789 GGTCTTGTATACAAAAATGGAGGGA 58.815 40.000 18.55 6.97 35.15 4.20
389 391 5.949354 TGGTCTTGTATACAAAAATGGAGGG 59.051 40.000 18.55 4.82 35.15 4.30
390 392 6.432783 TGTGGTCTTGTATACAAAAATGGAGG 59.567 38.462 18.55 5.48 35.15 4.30
393 395 8.141268 AGTTTGTGGTCTTGTATACAAAAATGG 58.859 33.333 18.55 7.49 42.52 3.16
394 396 9.180678 GAGTTTGTGGTCTTGTATACAAAAATG 57.819 33.333 18.55 7.84 42.52 2.32
395 397 8.908903 TGAGTTTGTGGTCTTGTATACAAAAAT 58.091 29.630 18.55 7.96 42.52 1.82
396 398 8.282455 TGAGTTTGTGGTCTTGTATACAAAAA 57.718 30.769 18.55 12.04 42.52 1.94
397 399 7.771361 TCTGAGTTTGTGGTCTTGTATACAAAA 59.229 33.333 18.55 3.45 42.52 2.44
398 400 7.276658 TCTGAGTTTGTGGTCTTGTATACAAA 58.723 34.615 18.55 7.84 39.79 2.83
399 401 6.822442 TCTGAGTTTGTGGTCTTGTATACAA 58.178 36.000 17.16 17.16 0.00 2.41
400 402 6.413783 TCTGAGTTTGTGGTCTTGTATACA 57.586 37.500 0.08 0.08 0.00 2.29
401 403 7.907214 AATCTGAGTTTGTGGTCTTGTATAC 57.093 36.000 0.00 0.00 0.00 1.47
402 404 8.590204 TGTAATCTGAGTTTGTGGTCTTGTATA 58.410 33.333 0.00 0.00 0.00 1.47
403 405 7.450074 TGTAATCTGAGTTTGTGGTCTTGTAT 58.550 34.615 0.00 0.00 0.00 2.29
404 406 6.822442 TGTAATCTGAGTTTGTGGTCTTGTA 58.178 36.000 0.00 0.00 0.00 2.41
405 407 5.680619 TGTAATCTGAGTTTGTGGTCTTGT 58.319 37.500 0.00 0.00 0.00 3.16
406 408 5.180117 CCTGTAATCTGAGTTTGTGGTCTTG 59.820 44.000 0.00 0.00 0.00 3.02
407 409 5.163195 ACCTGTAATCTGAGTTTGTGGTCTT 60.163 40.000 0.00 0.00 0.00 3.01
408 410 4.348168 ACCTGTAATCTGAGTTTGTGGTCT 59.652 41.667 0.00 0.00 0.00 3.85
409 411 4.642429 ACCTGTAATCTGAGTTTGTGGTC 58.358 43.478 0.00 0.00 0.00 4.02
410 412 4.706842 ACCTGTAATCTGAGTTTGTGGT 57.293 40.909 0.00 0.00 0.00 4.16
411 413 5.995282 TGTTACCTGTAATCTGAGTTTGTGG 59.005 40.000 0.00 0.00 0.00 4.17
412 414 7.490962 TTGTTACCTGTAATCTGAGTTTGTG 57.509 36.000 0.00 0.00 0.00 3.33
413 415 7.719633 ACATTGTTACCTGTAATCTGAGTTTGT 59.280 33.333 0.00 0.00 0.00 2.83
414 416 8.099364 ACATTGTTACCTGTAATCTGAGTTTG 57.901 34.615 0.00 0.00 0.00 2.93
415 417 9.787435 TTACATTGTTACCTGTAATCTGAGTTT 57.213 29.630 0.00 0.00 33.96 2.66
416 418 9.787435 TTTACATTGTTACCTGTAATCTGAGTT 57.213 29.630 0.00 0.00 37.60 3.01
417 419 9.787435 TTTTACATTGTTACCTGTAATCTGAGT 57.213 29.630 0.00 0.00 37.60 3.41
426 428 9.430623 GGCATTAAATTTTACATTGTTACCTGT 57.569 29.630 0.00 0.00 0.00 4.00
427 429 9.651913 AGGCATTAAATTTTACATTGTTACCTG 57.348 29.630 0.00 0.00 0.00 4.00
428 430 9.651913 CAGGCATTAAATTTTACATTGTTACCT 57.348 29.630 0.00 0.00 0.00 3.08
429 431 9.430623 ACAGGCATTAAATTTTACATTGTTACC 57.569 29.630 0.00 0.00 0.00 2.85
447 449 9.830975 AAAAAGTTGACTTATAAAACAGGCATT 57.169 25.926 0.00 0.00 34.61 3.56
476 478 9.104965 CGAAGTATTAATGATCCCAGTAAACAA 57.895 33.333 0.00 0.00 36.58 2.83
477 479 7.225931 GCGAAGTATTAATGATCCCAGTAAACA 59.774 37.037 0.00 0.00 36.58 2.83
478 480 7.225931 TGCGAAGTATTAATGATCCCAGTAAAC 59.774 37.037 0.00 0.00 36.58 2.01
479 481 7.276658 TGCGAAGTATTAATGATCCCAGTAAA 58.723 34.615 0.00 0.00 36.58 2.01
480 482 6.822442 TGCGAAGTATTAATGATCCCAGTAA 58.178 36.000 0.00 0.00 37.27 2.24
481 483 6.413783 TGCGAAGTATTAATGATCCCAGTA 57.586 37.500 0.00 0.00 0.00 2.74
482 484 5.290493 TGCGAAGTATTAATGATCCCAGT 57.710 39.130 0.00 0.00 0.00 4.00
483 485 5.391310 GCATGCGAAGTATTAATGATCCCAG 60.391 44.000 0.00 0.00 0.00 4.45
484 486 4.455533 GCATGCGAAGTATTAATGATCCCA 59.544 41.667 0.00 0.00 0.00 4.37
485 487 4.455533 TGCATGCGAAGTATTAATGATCCC 59.544 41.667 14.09 0.00 0.00 3.85
486 488 5.611796 TGCATGCGAAGTATTAATGATCC 57.388 39.130 14.09 0.00 0.00 3.36
487 489 5.510674 GCATGCATGCGAAGTATTAATGATC 59.489 40.000 33.99 4.65 44.67 2.92
488 490 5.396484 GCATGCATGCGAAGTATTAATGAT 58.604 37.500 33.99 0.00 44.67 2.45
489 491 4.786507 GCATGCATGCGAAGTATTAATGA 58.213 39.130 33.99 0.00 44.67 2.57
503 505 3.673338 CACTCAGTTTCTTTGCATGCATG 59.327 43.478 23.37 22.70 0.00 4.06
504 506 3.305813 CCACTCAGTTTCTTTGCATGCAT 60.306 43.478 23.37 0.58 0.00 3.96
505 507 2.034939 CCACTCAGTTTCTTTGCATGCA 59.965 45.455 18.46 18.46 0.00 3.96
506 508 2.294233 TCCACTCAGTTTCTTTGCATGC 59.706 45.455 11.82 11.82 0.00 4.06
507 509 3.057736 CCTCCACTCAGTTTCTTTGCATG 60.058 47.826 0.00 0.00 0.00 4.06
508 510 3.152341 CCTCCACTCAGTTTCTTTGCAT 58.848 45.455 0.00 0.00 0.00 3.96
509 511 2.172505 TCCTCCACTCAGTTTCTTTGCA 59.827 45.455 0.00 0.00 0.00 4.08
510 512 2.851195 TCCTCCACTCAGTTTCTTTGC 58.149 47.619 0.00 0.00 0.00 3.68
511 513 4.455606 ACTTCCTCCACTCAGTTTCTTTG 58.544 43.478 0.00 0.00 0.00 2.77
512 514 4.779993 ACTTCCTCCACTCAGTTTCTTT 57.220 40.909 0.00 0.00 0.00 2.52
513 515 4.262678 GCTACTTCCTCCACTCAGTTTCTT 60.263 45.833 0.00 0.00 0.00 2.52
514 516 3.259625 GCTACTTCCTCCACTCAGTTTCT 59.740 47.826 0.00 0.00 0.00 2.52
515 517 3.259625 AGCTACTTCCTCCACTCAGTTTC 59.740 47.826 0.00 0.00 0.00 2.78
516 518 3.007398 CAGCTACTTCCTCCACTCAGTTT 59.993 47.826 0.00 0.00 0.00 2.66
517 519 2.564947 CAGCTACTTCCTCCACTCAGTT 59.435 50.000 0.00 0.00 0.00 3.16
518 520 2.175202 CAGCTACTTCCTCCACTCAGT 58.825 52.381 0.00 0.00 0.00 3.41
519 521 2.165437 GTCAGCTACTTCCTCCACTCAG 59.835 54.545 0.00 0.00 0.00 3.35
520 522 2.171840 GTCAGCTACTTCCTCCACTCA 58.828 52.381 0.00 0.00 0.00 3.41
521 523 2.165437 CAGTCAGCTACTTCCTCCACTC 59.835 54.545 0.00 0.00 35.76 3.51
522 524 2.175202 CAGTCAGCTACTTCCTCCACT 58.825 52.381 0.00 0.00 35.76 4.00
523 525 1.896465 ACAGTCAGCTACTTCCTCCAC 59.104 52.381 0.00 0.00 35.76 4.02
524 526 2.171840 GACAGTCAGCTACTTCCTCCA 58.828 52.381 0.00 0.00 35.76 3.86
525 527 2.171840 TGACAGTCAGCTACTTCCTCC 58.828 52.381 0.00 0.00 35.76 4.30
526 528 4.464069 AATGACAGTCAGCTACTTCCTC 57.536 45.455 9.64 0.00 35.76 3.71
527 529 5.658634 TCATAATGACAGTCAGCTACTTCCT 59.341 40.000 9.64 0.00 35.76 3.36
528 530 5.751028 GTCATAATGACAGTCAGCTACTTCC 59.249 44.000 9.64 0.00 46.22 3.46
529 531 6.820470 GTCATAATGACAGTCAGCTACTTC 57.180 41.667 9.64 0.00 46.22 3.01
555 557 5.653507 ACCTGTTTAATAGTTGCATGCATG 58.346 37.500 23.37 22.70 0.00 4.06
556 558 5.920193 ACCTGTTTAATAGTTGCATGCAT 57.080 34.783 23.37 10.46 0.00 3.96
557 559 5.010516 ACAACCTGTTTAATAGTTGCATGCA 59.989 36.000 18.46 18.46 42.61 3.96
558 560 5.469479 ACAACCTGTTTAATAGTTGCATGC 58.531 37.500 11.82 11.82 42.61 4.06
559 561 8.296713 ACTAACAACCTGTTTAATAGTTGCATG 58.703 33.333 0.00 0.00 42.61 4.06
560 562 8.404107 ACTAACAACCTGTTTAATAGTTGCAT 57.596 30.769 0.00 0.00 42.61 3.96
561 563 7.811117 ACTAACAACCTGTTTAATAGTTGCA 57.189 32.000 0.00 0.00 42.61 4.08
562 564 7.953710 CGTACTAACAACCTGTTTAATAGTTGC 59.046 37.037 0.00 0.00 42.61 4.17
563 565 9.195411 TCGTACTAACAACCTGTTTAATAGTTG 57.805 33.333 0.00 0.00 41.45 3.16
564 566 9.415544 CTCGTACTAACAACCTGTTTAATAGTT 57.584 33.333 0.00 0.00 41.45 2.24
565 567 8.796475 TCTCGTACTAACAACCTGTTTAATAGT 58.204 33.333 0.00 0.00 41.45 2.12
566 568 9.630098 TTCTCGTACTAACAACCTGTTTAATAG 57.370 33.333 0.00 0.00 41.45 1.73
567 569 9.979578 TTTCTCGTACTAACAACCTGTTTAATA 57.020 29.630 0.00 0.00 41.45 0.98
568 570 8.891671 TTTCTCGTACTAACAACCTGTTTAAT 57.108 30.769 0.00 0.00 41.45 1.40
569 571 8.715191 TTTTCTCGTACTAACAACCTGTTTAA 57.285 30.769 0.00 0.00 41.45 1.52
570 572 8.891671 ATTTTCTCGTACTAACAACCTGTTTA 57.108 30.769 0.00 0.00 41.45 2.01
571 573 7.797038 ATTTTCTCGTACTAACAACCTGTTT 57.203 32.000 0.00 0.00 41.45 2.83
572 574 9.148104 GATATTTTCTCGTACTAACAACCTGTT 57.852 33.333 0.00 0.00 43.88 3.16
573 575 8.308931 TGATATTTTCTCGTACTAACAACCTGT 58.691 33.333 0.00 0.00 0.00 4.00
574 576 8.697846 TGATATTTTCTCGTACTAACAACCTG 57.302 34.615 0.00 0.00 0.00 4.00
575 577 9.886132 AATGATATTTTCTCGTACTAACAACCT 57.114 29.630 0.00 0.00 0.00 3.50
586 588 9.774742 GAAGCAAAGTTAATGATATTTTCTCGT 57.225 29.630 0.00 0.00 0.00 4.18
587 589 8.937932 CGAAGCAAAGTTAATGATATTTTCTCG 58.062 33.333 0.00 0.00 0.00 4.04
588 590 9.988350 TCGAAGCAAAGTTAATGATATTTTCTC 57.012 29.630 0.00 0.00 0.00 2.87
601 603 8.826710 CCATCAATAGTAATCGAAGCAAAGTTA 58.173 33.333 0.00 0.00 0.00 2.24
602 604 7.679638 GCCATCAATAGTAATCGAAGCAAAGTT 60.680 37.037 0.00 0.00 0.00 2.66
603 605 6.238484 GCCATCAATAGTAATCGAAGCAAAGT 60.238 38.462 0.00 0.00 0.00 2.66
604 606 6.138761 GCCATCAATAGTAATCGAAGCAAAG 58.861 40.000 0.00 0.00 0.00 2.77
605 607 5.008613 GGCCATCAATAGTAATCGAAGCAAA 59.991 40.000 0.00 0.00 0.00 3.68
606 608 4.515191 GGCCATCAATAGTAATCGAAGCAA 59.485 41.667 0.00 0.00 0.00 3.91
607 609 4.065088 GGCCATCAATAGTAATCGAAGCA 58.935 43.478 0.00 0.00 0.00 3.91
608 610 4.319177 AGGCCATCAATAGTAATCGAAGC 58.681 43.478 5.01 0.00 0.00 3.86
609 611 5.760253 ACAAGGCCATCAATAGTAATCGAAG 59.240 40.000 5.01 0.00 0.00 3.79
610 612 5.680619 ACAAGGCCATCAATAGTAATCGAA 58.319 37.500 5.01 0.00 0.00 3.71
611 613 5.290493 ACAAGGCCATCAATAGTAATCGA 57.710 39.130 5.01 0.00 0.00 3.59
612 614 8.251026 TCTATACAAGGCCATCAATAGTAATCG 58.749 37.037 5.01 0.00 0.00 3.34
614 616 9.896645 CATCTATACAAGGCCATCAATAGTAAT 57.103 33.333 5.01 0.00 0.00 1.89
615 617 7.824289 GCATCTATACAAGGCCATCAATAGTAA 59.176 37.037 5.01 0.00 0.00 2.24
616 618 7.038373 TGCATCTATACAAGGCCATCAATAGTA 60.038 37.037 5.01 0.00 0.00 1.82
617 619 6.176183 GCATCTATACAAGGCCATCAATAGT 58.824 40.000 5.01 0.00 0.00 2.12
618 620 6.175471 TGCATCTATACAAGGCCATCAATAG 58.825 40.000 5.01 7.17 0.00 1.73
619 621 6.125589 TGCATCTATACAAGGCCATCAATA 57.874 37.500 5.01 0.00 0.00 1.90
620 622 4.989277 TGCATCTATACAAGGCCATCAAT 58.011 39.130 5.01 0.00 0.00 2.57
621 623 4.436113 TGCATCTATACAAGGCCATCAA 57.564 40.909 5.01 0.00 0.00 2.57
622 624 4.436113 TTGCATCTATACAAGGCCATCA 57.564 40.909 5.01 0.00 0.00 3.07
623 625 5.772825 TTTTGCATCTATACAAGGCCATC 57.227 39.130 5.01 0.00 0.00 3.51
624 626 5.599656 ACATTTTGCATCTATACAAGGCCAT 59.400 36.000 5.01 0.00 0.00 4.40
625 627 4.955450 ACATTTTGCATCTATACAAGGCCA 59.045 37.500 5.01 0.00 0.00 5.36
626 628 5.520376 ACATTTTGCATCTATACAAGGCC 57.480 39.130 0.00 0.00 0.00 5.19
637 639 9.994432 GCTACTATGGAATATACATTTTGCATC 57.006 33.333 3.41 0.00 35.77 3.91
638 640 8.960591 GGCTACTATGGAATATACATTTTGCAT 58.039 33.333 0.00 5.15 37.59 3.96
639 641 8.163408 AGGCTACTATGGAATATACATTTTGCA 58.837 33.333 0.00 0.00 0.00 4.08
640 642 8.567285 AGGCTACTATGGAATATACATTTTGC 57.433 34.615 0.00 0.00 0.00 3.68
658 660 8.164070 CCCTCCATTTTTATATACAAGGCTACT 58.836 37.037 0.00 0.00 0.00 2.57
659 661 7.393515 CCCCTCCATTTTTATATACAAGGCTAC 59.606 40.741 0.00 0.00 0.00 3.58
660 662 7.466804 CCCCTCCATTTTTATATACAAGGCTA 58.533 38.462 0.00 0.00 0.00 3.93
661 663 6.314917 CCCCTCCATTTTTATATACAAGGCT 58.685 40.000 0.00 0.00 0.00 4.58
662 664 5.480422 CCCCCTCCATTTTTATATACAAGGC 59.520 44.000 0.00 0.00 0.00 4.35
663 665 6.620429 ACCCCCTCCATTTTTATATACAAGG 58.380 40.000 0.00 0.00 0.00 3.61
664 666 9.822727 ATTACCCCCTCCATTTTTATATACAAG 57.177 33.333 0.00 0.00 0.00 3.16
669 671 9.419667 AGTCTATTACCCCCTCCATTTTTATAT 57.580 33.333 0.00 0.00 0.00 0.86
670 672 8.823810 AGTCTATTACCCCCTCCATTTTTATA 57.176 34.615 0.00 0.00 0.00 0.98
671 673 7.723109 AGTCTATTACCCCCTCCATTTTTAT 57.277 36.000 0.00 0.00 0.00 1.40
672 674 7.351166 CAAGTCTATTACCCCCTCCATTTTTA 58.649 38.462 0.00 0.00 0.00 1.52
673 675 6.194967 CAAGTCTATTACCCCCTCCATTTTT 58.805 40.000 0.00 0.00 0.00 1.94
674 676 5.340863 CCAAGTCTATTACCCCCTCCATTTT 60.341 44.000 0.00 0.00 0.00 1.82
675 677 4.168088 CCAAGTCTATTACCCCCTCCATTT 59.832 45.833 0.00 0.00 0.00 2.32
676 678 3.722101 CCAAGTCTATTACCCCCTCCATT 59.278 47.826 0.00 0.00 0.00 3.16
677 679 3.312155 ACCAAGTCTATTACCCCCTCCAT 60.312 47.826 0.00 0.00 0.00 3.41
678 680 2.046729 ACCAAGTCTATTACCCCCTCCA 59.953 50.000 0.00 0.00 0.00 3.86
679 681 2.438392 CACCAAGTCTATTACCCCCTCC 59.562 54.545 0.00 0.00 0.00 4.30
680 682 2.158798 GCACCAAGTCTATTACCCCCTC 60.159 54.545 0.00 0.00 0.00 4.30
681 683 1.844497 GCACCAAGTCTATTACCCCCT 59.156 52.381 0.00 0.00 0.00 4.79
682 684 1.474498 CGCACCAAGTCTATTACCCCC 60.474 57.143 0.00 0.00 0.00 5.40
683 685 1.483415 TCGCACCAAGTCTATTACCCC 59.517 52.381 0.00 0.00 0.00 4.95
684 686 2.973694 TCGCACCAAGTCTATTACCC 57.026 50.000 0.00 0.00 0.00 3.69
685 687 5.813080 ATTTTCGCACCAAGTCTATTACC 57.187 39.130 0.00 0.00 0.00 2.85
686 688 6.238293 GGGTATTTTCGCACCAAGTCTATTAC 60.238 42.308 0.00 0.00 36.48 1.89
687 689 5.818857 GGGTATTTTCGCACCAAGTCTATTA 59.181 40.000 0.00 0.00 36.48 0.98
688 690 4.638865 GGGTATTTTCGCACCAAGTCTATT 59.361 41.667 0.00 0.00 36.48 1.73
739 741 9.237187 TGAATTAGCCAGACAATTAATTACACA 57.763 29.630 0.00 0.00 0.00 3.72
817 819 4.911610 CGGACAAAGTCATTAGTGCAAAAG 59.088 41.667 0.00 0.00 33.68 2.27
825 827 6.480524 TGTCATTTCGGACAAAGTCATTAG 57.519 37.500 0.00 0.00 44.34 1.73
848 850 4.380655 GCTAGATGACAGAGTTGGTACGTT 60.381 45.833 0.00 0.00 0.00 3.99
850 852 3.489398 GGCTAGATGACAGAGTTGGTACG 60.489 52.174 0.00 0.00 0.00 3.67
884 897 3.013921 TGATGGAAATTTAGTGGACGGC 58.986 45.455 0.00 0.00 0.00 5.68
907 1778 0.179054 GGCGGATAGGTTTGAGGGTC 60.179 60.000 0.00 0.00 0.00 4.46
1030 1910 2.818132 GAGGGTCATGGCGAGGAG 59.182 66.667 0.00 0.00 0.00 3.69
1031 1911 3.147595 CGAGGGTCATGGCGAGGA 61.148 66.667 0.00 0.00 0.00 3.71
1032 1912 4.899239 GCGAGGGTCATGGCGAGG 62.899 72.222 0.00 0.00 0.00 4.63
1033 1913 4.147449 TGCGAGGGTCATGGCGAG 62.147 66.667 0.00 0.00 0.00 5.03
1034 1914 4.147449 CTGCGAGGGTCATGGCGA 62.147 66.667 0.00 0.00 0.00 5.54
1035 1915 4.457496 ACTGCGAGGGTCATGGCG 62.457 66.667 0.00 0.00 0.00 5.69
1036 1916 2.512515 GACTGCGAGGGTCATGGC 60.513 66.667 0.00 0.00 34.23 4.40
1037 1917 2.202797 CGACTGCGAGGGTCATGG 60.203 66.667 0.00 0.00 40.82 3.66
1038 1918 2.887568 GCGACTGCGAGGGTCATG 60.888 66.667 0.00 0.00 40.82 3.07
1110 1990 1.163420 TGTGCGCATCCTTCACGTTT 61.163 50.000 15.91 0.00 33.69 3.60
1122 2002 3.709633 AGCTCCTGGATGTGCGCA 61.710 61.111 5.66 5.66 0.00 6.09
1176 2056 2.943653 CGAAACCACAGCCCGTTC 59.056 61.111 0.00 0.00 0.00 3.95
1205 2085 4.790962 CCACCTGCTGCTCGCCAT 62.791 66.667 0.00 0.00 38.05 4.40
1249 2129 1.787057 GAGTCATCCTCCGCGTCGAT 61.787 60.000 4.92 0.00 33.79 3.59
1263 2143 2.357034 GCGTTCTTGCCGGAGTCA 60.357 61.111 5.05 0.00 0.00 3.41
1372 2252 5.928839 GTCGCCAACTACATATTCATGAGAT 59.071 40.000 0.00 0.00 35.96 2.75
1528 2418 6.960542 ACTCCCTCGTCCCATAATATAAGATT 59.039 38.462 0.00 0.00 0.00 2.40
1539 2429 0.629596 TGAGTACTCCCTCGTCCCAT 59.370 55.000 20.11 0.00 34.04 4.00
1564 2454 0.598942 CGTCACGATCCAACCACACA 60.599 55.000 0.00 0.00 0.00 3.72
1573 2463 2.025727 CCGTAGGCGTCACGATCC 59.974 66.667 0.00 0.00 46.14 3.36
1638 2528 6.119144 ACTTTATTTGCCAGTAATACGCTG 57.881 37.500 0.00 0.00 0.00 5.18
1728 2624 0.523072 CTAACCACGCAGCAAAGCAT 59.477 50.000 0.00 0.00 0.00 3.79
1742 2638 7.222000 TCATGAAAACCCAATAACACTAACC 57.778 36.000 0.00 0.00 0.00 2.85
1914 2812 7.957002 TGACCAAGTTCAAAGCCAAAAATATA 58.043 30.769 0.00 0.00 0.00 0.86
2112 3041 5.278957 AGAAAAATTTCCTGCATAAGTGCGT 60.279 36.000 2.37 0.00 44.97 5.24
2114 3043 7.090173 TGTAGAAAAATTTCCTGCATAAGTGC 58.910 34.615 2.37 0.00 43.62 4.40
2141 3070 9.944376 ACACAAATATAGTACACTCTGTCATTT 57.056 29.630 0.00 0.00 0.00 2.32
2202 3131 5.981088 AAAACATATCAACCTCATGCACA 57.019 34.783 0.00 0.00 0.00 4.57
2228 3166 3.266541 TCAATCGACAACAACATGCAC 57.733 42.857 0.00 0.00 0.00 4.57
2232 3170 8.417780 TTTTTCAAATCAATCGACAACAACAT 57.582 26.923 0.00 0.00 0.00 2.71
2269 3207 5.361427 TGGACTTAGTTCACGTTTTGATCA 58.639 37.500 0.00 0.00 32.84 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.