Multiple sequence alignment - TraesCS4A01G247700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G247700 chr4A 100.000 2951 0 0 1 2951 558657367 558654417 0.000000e+00 5450.0
1 TraesCS4A01G247700 chr4A 100.000 31 0 0 2682 2712 558654650 558654620 1.140000e-04 58.4
2 TraesCS4A01G247700 chr4A 100.000 31 0 0 2718 2748 558654686 558654656 1.140000e-04 58.4
3 TraesCS4A01G247700 chr4B 92.411 2016 69 21 695 2663 60073731 60075709 0.000000e+00 2798.0
4 TraesCS4A01G247700 chr4B 94.408 1663 62 12 607 2256 60025981 60027625 0.000000e+00 2527.0
5 TraesCS4A01G247700 chr4B 90.040 251 24 1 41 290 654045310 654045060 1.020000e-84 324.0
6 TraesCS4A01G247700 chr4B 87.111 225 9 5 2740 2951 60075834 60076051 1.370000e-58 237.0
7 TraesCS4A01G247700 chr4B 83.616 177 14 8 2015 2191 60076810 60076971 5.090000e-33 152.0
8 TraesCS4A01G247700 chr4B 94.737 76 4 0 566 641 60073245 60073320 5.170000e-23 119.0
9 TraesCS4A01G247700 chr4D 92.865 1934 83 24 343 2256 40842653 40844551 0.000000e+00 2756.0
10 TraesCS4A01G247700 chr4D 91.736 363 18 4 2253 2612 40844577 40844930 7.350000e-136 494.0
11 TraesCS4A01G247700 chr2B 94.146 615 31 4 1490 2103 746165653 746165043 0.000000e+00 931.0
12 TraesCS4A01G247700 chr2B 83.333 252 22 5 2720 2951 202913760 202914011 6.410000e-52 215.0
13 TraesCS4A01G247700 chr2B 84.456 193 15 9 1996 2188 202914731 202914908 3.020000e-40 176.0
14 TraesCS4A01G247700 chr2B 85.612 139 8 6 2031 2166 202914038 202914167 5.130000e-28 135.0
15 TraesCS4A01G247700 chr2B 100.000 30 0 0 342 371 214898576 214898605 4.110000e-04 56.5
16 TraesCS4A01G247700 chr3B 93.984 615 32 4 1490 2103 487556644 487556034 0.000000e+00 926.0
17 TraesCS4A01G247700 chrUn 87.797 295 30 5 1 290 50850187 50850480 1.010000e-89 340.0
18 TraesCS4A01G247700 chr2D 93.151 219 15 0 72 290 355705198 355705416 3.670000e-84 322.0
19 TraesCS4A01G247700 chr2A 93.519 216 14 0 75 290 539058559 539058344 3.670000e-84 322.0
20 TraesCS4A01G247700 chr2A 90.213 235 21 2 75 309 573237777 573237545 3.700000e-79 305.0
21 TraesCS4A01G247700 chr3D 92.793 222 14 2 75 296 202171105 202170886 1.320000e-83 320.0
22 TraesCS4A01G247700 chr5D 89.412 255 22 4 41 290 26571186 26570932 1.710000e-82 316.0
23 TraesCS4A01G247700 chr3A 91.102 236 18 3 72 306 478701239 478701472 1.710000e-82 316.0
24 TraesCS4A01G247700 chr1D 92.694 219 16 0 72 290 448103151 448103369 1.710000e-82 316.0
25 TraesCS4A01G247700 chr7A 86.550 171 13 4 2018 2188 22837332 22837172 2.340000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G247700 chr4A 558654417 558657367 2950 True 1855.6 5450 100.00000 1 2951 3 chr4A.!!$R1 2950
1 TraesCS4A01G247700 chr4B 60025981 60027625 1644 False 2527.0 2527 94.40800 607 2256 1 chr4B.!!$F1 1649
2 TraesCS4A01G247700 chr4B 60073245 60076971 3726 False 826.5 2798 89.46875 566 2951 4 chr4B.!!$F2 2385
3 TraesCS4A01G247700 chr4D 40842653 40844930 2277 False 1625.0 2756 92.30050 343 2612 2 chr4D.!!$F1 2269
4 TraesCS4A01G247700 chr2B 746165043 746165653 610 True 931.0 931 94.14600 1490 2103 1 chr2B.!!$R1 613
5 TraesCS4A01G247700 chr3B 487556034 487556644 610 True 926.0 926 93.98400 1490 2103 1 chr3B.!!$R1 613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 280 0.038166 TGGATCTGCCACTTTGGGTC 59.962 55.0 0.0 0.0 43.33 4.46 F
323 324 0.243365 TTTGATGGCCGACATTGCAC 59.757 50.0 0.0 0.0 40.72 4.57 F
990 1390 0.478507 GAGAGGGAGAGGAGGAGGAG 59.521 65.0 0.0 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1767 2174 0.388520 CGTGGTGCTCGATGTTCTGA 60.389 55.0 0.00 0.00 0.00 3.27 R
1770 2177 0.666274 TCACGTGGTGCTCGATGTTC 60.666 55.0 17.00 0.00 32.98 3.18 R
2808 3297 1.024271 TTGACAGCTGTTGCCTCAAC 58.976 50.0 22.65 5.86 43.78 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.512573 TGCAATGCACGTTATTTTGAATG 57.487 34.783 2.72 0.00 31.71 2.67
27 28 4.388165 TGCAATGCACGTTATTTTGAATGG 59.612 37.500 2.72 0.00 31.71 3.16
28 29 4.201705 GCAATGCACGTTATTTTGAATGGG 60.202 41.667 0.00 0.00 0.00 4.00
29 30 2.953020 TGCACGTTATTTTGAATGGGC 58.047 42.857 0.00 0.00 43.74 5.36
30 31 1.917303 GCACGTTATTTTGAATGGGCG 59.083 47.619 0.00 0.00 35.16 6.13
31 32 1.917303 CACGTTATTTTGAATGGGCGC 59.083 47.619 0.00 0.00 0.00 6.53
32 33 1.135228 ACGTTATTTTGAATGGGCGCC 60.135 47.619 21.18 21.18 0.00 6.53
33 34 1.134175 CGTTATTTTGAATGGGCGCCT 59.866 47.619 28.56 6.33 0.00 5.52
34 35 2.794631 CGTTATTTTGAATGGGCGCCTC 60.795 50.000 28.56 17.20 0.00 4.70
35 36 2.427095 GTTATTTTGAATGGGCGCCTCT 59.573 45.455 28.56 11.31 0.00 3.69
36 37 0.819582 ATTTTGAATGGGCGCCTCTG 59.180 50.000 28.56 0.00 0.00 3.35
37 38 0.539438 TTTTGAATGGGCGCCTCTGT 60.539 50.000 28.56 9.46 0.00 3.41
38 39 0.326595 TTTGAATGGGCGCCTCTGTA 59.673 50.000 28.56 7.82 0.00 2.74
39 40 0.546122 TTGAATGGGCGCCTCTGTAT 59.454 50.000 28.56 10.42 0.00 2.29
40 41 1.419381 TGAATGGGCGCCTCTGTATA 58.581 50.000 28.56 4.25 0.00 1.47
41 42 1.977854 TGAATGGGCGCCTCTGTATAT 59.022 47.619 28.56 6.79 0.00 0.86
42 43 2.289631 TGAATGGGCGCCTCTGTATATG 60.290 50.000 28.56 0.00 0.00 1.78
43 44 1.352083 ATGGGCGCCTCTGTATATGT 58.648 50.000 28.56 0.00 0.00 2.29
44 45 0.392706 TGGGCGCCTCTGTATATGTG 59.607 55.000 28.56 0.00 0.00 3.21
45 46 0.951040 GGGCGCCTCTGTATATGTGC 60.951 60.000 28.56 0.00 0.00 4.57
46 47 1.284982 GGCGCCTCTGTATATGTGCG 61.285 60.000 22.15 0.00 44.38 5.34
47 48 0.597637 GCGCCTCTGTATATGTGCGT 60.598 55.000 0.00 0.00 43.54 5.24
48 49 1.852942 CGCCTCTGTATATGTGCGTT 58.147 50.000 0.00 0.00 37.44 4.84
49 50 1.522676 CGCCTCTGTATATGTGCGTTG 59.477 52.381 0.00 0.00 37.44 4.10
50 51 1.261619 GCCTCTGTATATGTGCGTTGC 59.738 52.381 0.00 0.00 0.00 4.17
51 52 1.522676 CCTCTGTATATGTGCGTTGCG 59.477 52.381 0.00 0.00 0.00 4.85
52 53 2.193447 CTCTGTATATGTGCGTTGCGT 58.807 47.619 0.00 0.00 0.00 5.24
53 54 2.190161 TCTGTATATGTGCGTTGCGTC 58.810 47.619 0.00 0.00 0.00 5.19
54 55 2.159296 TCTGTATATGTGCGTTGCGTCT 60.159 45.455 0.00 0.00 0.00 4.18
55 56 3.065648 TCTGTATATGTGCGTTGCGTCTA 59.934 43.478 0.00 0.00 0.00 2.59
56 57 3.972403 TGTATATGTGCGTTGCGTCTAT 58.028 40.909 0.00 0.00 0.00 1.98
57 58 5.049267 TCTGTATATGTGCGTTGCGTCTATA 60.049 40.000 0.00 0.00 0.00 1.31
58 59 5.705902 TGTATATGTGCGTTGCGTCTATAT 58.294 37.500 0.00 0.00 0.00 0.86
59 60 6.153756 TGTATATGTGCGTTGCGTCTATATT 58.846 36.000 0.00 0.00 0.00 1.28
60 61 3.859745 ATGTGCGTTGCGTCTATATTG 57.140 42.857 0.00 0.00 0.00 1.90
61 62 2.612604 TGTGCGTTGCGTCTATATTGT 58.387 42.857 0.00 0.00 0.00 2.71
62 63 2.347150 TGTGCGTTGCGTCTATATTGTG 59.653 45.455 0.00 0.00 0.00 3.33
63 64 2.347452 GTGCGTTGCGTCTATATTGTGT 59.653 45.455 0.00 0.00 0.00 3.72
64 65 2.997303 TGCGTTGCGTCTATATTGTGTT 59.003 40.909 0.00 0.00 0.00 3.32
65 66 3.061563 TGCGTTGCGTCTATATTGTGTTC 59.938 43.478 0.00 0.00 0.00 3.18
66 67 3.061563 GCGTTGCGTCTATATTGTGTTCA 59.938 43.478 0.00 0.00 0.00 3.18
67 68 4.434989 GCGTTGCGTCTATATTGTGTTCAA 60.435 41.667 0.00 0.00 37.98 2.69
68 69 5.613812 CGTTGCGTCTATATTGTGTTCAAA 58.386 37.500 0.00 0.00 37.11 2.69
69 70 6.074642 CGTTGCGTCTATATTGTGTTCAAAA 58.925 36.000 0.00 0.00 37.11 2.44
70 71 6.575572 CGTTGCGTCTATATTGTGTTCAAAAA 59.424 34.615 0.00 0.00 37.11 1.94
94 95 5.512573 CATGCAATGCACGTTAATTTGAA 57.487 34.783 11.23 0.00 43.04 2.69
95 96 5.913637 CATGCAATGCACGTTAATTTGAAA 58.086 33.333 11.23 0.00 43.04 2.69
96 97 5.573296 TGCAATGCACGTTAATTTGAAAG 57.427 34.783 2.72 0.00 31.71 2.62
97 98 5.046529 TGCAATGCACGTTAATTTGAAAGT 58.953 33.333 2.72 0.00 31.71 2.66
98 99 6.209361 TGCAATGCACGTTAATTTGAAAGTA 58.791 32.000 2.72 0.00 31.71 2.24
99 100 6.865726 TGCAATGCACGTTAATTTGAAAGTAT 59.134 30.769 2.72 0.00 31.71 2.12
100 101 8.023706 TGCAATGCACGTTAATTTGAAAGTATA 58.976 29.630 2.72 0.00 31.71 1.47
101 102 9.019764 GCAATGCACGTTAATTTGAAAGTATAT 57.980 29.630 0.00 0.00 0.00 0.86
115 116 9.602568 TTTGAAAGTATATTAAGTACATGCGGA 57.397 29.630 0.00 0.00 0.00 5.54
116 117 9.772973 TTGAAAGTATATTAAGTACATGCGGAT 57.227 29.630 0.00 0.00 0.00 4.18
126 127 9.871238 ATTAAGTACATGCGGATATTAAGTAGG 57.129 33.333 0.00 0.00 0.00 3.18
127 128 7.534723 AAGTACATGCGGATATTAAGTAGGA 57.465 36.000 0.00 0.00 0.00 2.94
128 129 7.719871 AGTACATGCGGATATTAAGTAGGAT 57.280 36.000 0.00 0.00 0.00 3.24
129 130 8.818622 AGTACATGCGGATATTAAGTAGGATA 57.181 34.615 0.00 0.00 0.00 2.59
130 131 9.422681 AGTACATGCGGATATTAAGTAGGATAT 57.577 33.333 0.00 0.00 0.00 1.63
131 132 9.680315 GTACATGCGGATATTAAGTAGGATATC 57.320 37.037 0.00 0.00 35.48 1.63
132 133 8.306313 ACATGCGGATATTAAGTAGGATATCA 57.694 34.615 4.83 0.00 37.11 2.15
133 134 8.928448 ACATGCGGATATTAAGTAGGATATCAT 58.072 33.333 4.83 0.00 37.11 2.45
134 135 9.770097 CATGCGGATATTAAGTAGGATATCATT 57.230 33.333 4.83 0.00 37.11 2.57
186 187 7.749539 ATTTGGCATAAAATTAACTACACGC 57.250 32.000 0.00 0.00 0.00 5.34
187 188 6.503589 TTGGCATAAAATTAACTACACGCT 57.496 33.333 0.00 0.00 0.00 5.07
188 189 7.612668 TTGGCATAAAATTAACTACACGCTA 57.387 32.000 0.00 0.00 0.00 4.26
189 190 7.612668 TGGCATAAAATTAACTACACGCTAA 57.387 32.000 0.00 0.00 0.00 3.09
190 191 8.041829 TGGCATAAAATTAACTACACGCTAAA 57.958 30.769 0.00 0.00 0.00 1.85
191 192 7.964011 TGGCATAAAATTAACTACACGCTAAAC 59.036 33.333 0.00 0.00 0.00 2.01
202 203 4.417240 GCTAAACGCGTTGAGTGC 57.583 55.556 31.71 24.29 0.00 4.40
203 204 1.860078 GCTAAACGCGTTGAGTGCT 59.140 52.632 31.71 16.26 0.00 4.40
204 205 0.179248 GCTAAACGCGTTGAGTGCTC 60.179 55.000 31.71 15.40 0.00 4.26
205 206 0.091344 CTAAACGCGTTGAGTGCTCG 59.909 55.000 27.34 0.27 0.00 5.03
206 207 0.318022 TAAACGCGTTGAGTGCTCGA 60.318 50.000 27.34 0.00 0.00 4.04
207 208 1.818221 AAACGCGTTGAGTGCTCGAC 61.818 55.000 27.34 9.05 39.93 4.20
208 209 2.729491 CGCGTTGAGTGCTCGACA 60.729 61.111 16.98 0.00 42.71 4.35
209 210 2.088763 CGCGTTGAGTGCTCGACAT 61.089 57.895 16.98 0.00 42.71 3.06
210 211 1.617755 CGCGTTGAGTGCTCGACATT 61.618 55.000 16.98 0.00 42.71 2.71
211 212 0.179240 GCGTTGAGTGCTCGACATTG 60.179 55.000 16.98 5.00 42.71 2.82
212 213 1.418373 CGTTGAGTGCTCGACATTGA 58.582 50.000 16.98 0.00 42.71 2.57
213 214 1.792367 CGTTGAGTGCTCGACATTGAA 59.208 47.619 16.98 0.00 42.71 2.69
214 215 2.159920 CGTTGAGTGCTCGACATTGAAG 60.160 50.000 16.98 0.00 42.71 3.02
215 216 1.432514 TGAGTGCTCGACATTGAAGC 58.567 50.000 0.00 0.00 0.00 3.86
216 217 1.270252 TGAGTGCTCGACATTGAAGCA 60.270 47.619 8.38 8.38 0.00 3.91
217 218 1.392853 GAGTGCTCGACATTGAAGCAG 59.607 52.381 11.48 0.00 36.10 4.24
218 219 1.151668 GTGCTCGACATTGAAGCAGT 58.848 50.000 11.48 0.00 36.10 4.40
219 220 1.127582 GTGCTCGACATTGAAGCAGTC 59.872 52.381 11.48 0.00 36.10 3.51
220 221 1.001293 TGCTCGACATTGAAGCAGTCT 59.999 47.619 8.38 0.00 0.00 3.24
221 222 2.231235 TGCTCGACATTGAAGCAGTCTA 59.769 45.455 8.38 0.00 0.00 2.59
222 223 3.254060 GCTCGACATTGAAGCAGTCTAA 58.746 45.455 0.00 0.00 0.00 2.10
223 224 3.305629 GCTCGACATTGAAGCAGTCTAAG 59.694 47.826 0.00 0.00 0.00 2.18
224 225 4.489810 CTCGACATTGAAGCAGTCTAAGT 58.510 43.478 0.00 0.00 0.00 2.24
225 226 4.486090 TCGACATTGAAGCAGTCTAAGTC 58.514 43.478 0.00 0.00 0.00 3.01
226 227 3.301906 CGACATTGAAGCAGTCTAAGTCG 59.698 47.826 12.32 12.32 37.63 4.18
227 228 4.238514 GACATTGAAGCAGTCTAAGTCGT 58.761 43.478 0.00 0.00 0.00 4.34
228 229 4.632153 ACATTGAAGCAGTCTAAGTCGTT 58.368 39.130 0.00 0.00 0.00 3.85
229 230 4.449068 ACATTGAAGCAGTCTAAGTCGTTG 59.551 41.667 0.00 0.00 0.00 4.10
230 231 3.026630 TGAAGCAGTCTAAGTCGTTGG 57.973 47.619 0.00 0.00 0.00 3.77
231 232 2.626266 TGAAGCAGTCTAAGTCGTTGGA 59.374 45.455 0.00 0.00 0.00 3.53
232 233 3.258372 TGAAGCAGTCTAAGTCGTTGGAT 59.742 43.478 0.00 0.00 0.00 3.41
233 234 3.963428 AGCAGTCTAAGTCGTTGGATT 57.037 42.857 0.00 0.00 0.00 3.01
234 235 3.589988 AGCAGTCTAAGTCGTTGGATTG 58.410 45.455 0.00 0.00 34.97 2.67
235 236 3.258372 AGCAGTCTAAGTCGTTGGATTGA 59.742 43.478 0.20 0.00 34.08 2.57
236 237 3.368236 GCAGTCTAAGTCGTTGGATTGAC 59.632 47.826 0.20 0.00 34.08 3.18
237 238 4.556233 CAGTCTAAGTCGTTGGATTGACA 58.444 43.478 0.00 0.00 34.08 3.58
238 239 5.171476 CAGTCTAAGTCGTTGGATTGACAT 58.829 41.667 0.00 0.00 34.08 3.06
239 240 5.289675 CAGTCTAAGTCGTTGGATTGACATC 59.710 44.000 0.00 0.00 34.08 3.06
240 241 5.047306 AGTCTAAGTCGTTGGATTGACATCA 60.047 40.000 0.00 0.00 37.58 3.07
241 242 5.812642 GTCTAAGTCGTTGGATTGACATCAT 59.187 40.000 0.00 0.00 37.58 2.45
242 243 6.313905 GTCTAAGTCGTTGGATTGACATCATT 59.686 38.462 0.00 0.00 37.58 2.57
243 244 5.964958 AAGTCGTTGGATTGACATCATTT 57.035 34.783 0.00 0.00 37.58 2.32
244 245 5.300969 AGTCGTTGGATTGACATCATTTG 57.699 39.130 0.00 0.00 37.58 2.32
245 246 5.003160 AGTCGTTGGATTGACATCATTTGA 58.997 37.500 0.00 0.00 37.58 2.69
246 247 5.649395 AGTCGTTGGATTGACATCATTTGAT 59.351 36.000 0.00 0.00 37.58 2.57
260 261 6.812998 CATCATTTGATGGCCAAGATTAACT 58.187 36.000 10.96 0.00 46.09 2.24
261 262 6.211587 TCATTTGATGGCCAAGATTAACTG 57.788 37.500 10.96 1.18 35.94 3.16
262 263 5.127519 TCATTTGATGGCCAAGATTAACTGG 59.872 40.000 10.96 0.00 35.94 4.00
263 264 4.314522 TTGATGGCCAAGATTAACTGGA 57.685 40.909 10.96 0.00 0.00 3.86
264 265 4.524802 TGATGGCCAAGATTAACTGGAT 57.475 40.909 10.96 0.00 0.00 3.41
265 266 4.464008 TGATGGCCAAGATTAACTGGATC 58.536 43.478 10.96 0.00 0.00 3.36
266 267 4.166725 TGATGGCCAAGATTAACTGGATCT 59.833 41.667 10.96 0.00 35.43 2.75
267 268 3.889815 TGGCCAAGATTAACTGGATCTG 58.110 45.455 0.61 0.00 34.24 2.90
268 269 2.620585 GGCCAAGATTAACTGGATCTGC 59.379 50.000 0.00 0.00 34.24 4.26
269 270 2.620585 GCCAAGATTAACTGGATCTGCC 59.379 50.000 4.61 0.00 34.24 4.85
270 271 3.889815 CCAAGATTAACTGGATCTGCCA 58.110 45.455 0.00 0.00 46.96 4.92
271 272 3.629398 CCAAGATTAACTGGATCTGCCAC 59.371 47.826 0.00 0.00 43.33 5.01
272 273 4.521146 CAAGATTAACTGGATCTGCCACT 58.479 43.478 0.00 0.00 43.33 4.00
273 274 4.851639 AGATTAACTGGATCTGCCACTT 57.148 40.909 0.00 0.00 43.33 3.16
274 275 5.184892 AGATTAACTGGATCTGCCACTTT 57.815 39.130 0.00 0.00 43.33 2.66
275 276 4.946157 AGATTAACTGGATCTGCCACTTTG 59.054 41.667 0.00 0.00 43.33 2.77
276 277 1.915141 AACTGGATCTGCCACTTTGG 58.085 50.000 0.00 0.00 43.33 3.28
277 278 0.038744 ACTGGATCTGCCACTTTGGG 59.961 55.000 0.00 0.00 43.33 4.12
278 279 0.038744 CTGGATCTGCCACTTTGGGT 59.961 55.000 0.00 0.00 43.33 4.51
279 280 0.038166 TGGATCTGCCACTTTGGGTC 59.962 55.000 0.00 0.00 43.33 4.46
280 281 0.329596 GGATCTGCCACTTTGGGTCT 59.670 55.000 0.00 0.00 38.19 3.85
281 282 1.272147 GGATCTGCCACTTTGGGTCTT 60.272 52.381 0.00 0.00 38.19 3.01
282 283 2.519013 GATCTGCCACTTTGGGTCTTT 58.481 47.619 0.00 0.00 38.19 2.52
283 284 2.452600 TCTGCCACTTTGGGTCTTTT 57.547 45.000 0.00 0.00 38.19 2.27
284 285 2.745968 TCTGCCACTTTGGGTCTTTTT 58.254 42.857 0.00 0.00 38.19 1.94
285 286 3.904717 TCTGCCACTTTGGGTCTTTTTA 58.095 40.909 0.00 0.00 38.19 1.52
286 287 4.479158 TCTGCCACTTTGGGTCTTTTTAT 58.521 39.130 0.00 0.00 38.19 1.40
287 288 5.636123 TCTGCCACTTTGGGTCTTTTTATA 58.364 37.500 0.00 0.00 38.19 0.98
288 289 6.252995 TCTGCCACTTTGGGTCTTTTTATAT 58.747 36.000 0.00 0.00 38.19 0.86
289 290 6.723977 TCTGCCACTTTGGGTCTTTTTATATT 59.276 34.615 0.00 0.00 38.19 1.28
290 291 7.234577 TCTGCCACTTTGGGTCTTTTTATATTT 59.765 33.333 0.00 0.00 38.19 1.40
291 292 7.158021 TGCCACTTTGGGTCTTTTTATATTTG 58.842 34.615 0.00 0.00 38.19 2.32
292 293 6.593770 GCCACTTTGGGTCTTTTTATATTTGG 59.406 38.462 0.00 0.00 38.19 3.28
293 294 6.593770 CCACTTTGGGTCTTTTTATATTTGGC 59.406 38.462 0.00 0.00 32.67 4.52
294 295 7.158021 CACTTTGGGTCTTTTTATATTTGGCA 58.842 34.615 0.00 0.00 0.00 4.92
295 296 7.823799 CACTTTGGGTCTTTTTATATTTGGCAT 59.176 33.333 0.00 0.00 0.00 4.40
296 297 7.823799 ACTTTGGGTCTTTTTATATTTGGCATG 59.176 33.333 0.00 0.00 0.00 4.06
297 298 7.487822 TTGGGTCTTTTTATATTTGGCATGA 57.512 32.000 0.00 0.00 0.00 3.07
298 299 7.487822 TGGGTCTTTTTATATTTGGCATGAA 57.512 32.000 0.00 0.00 0.00 2.57
299 300 7.911651 TGGGTCTTTTTATATTTGGCATGAAA 58.088 30.769 0.00 0.00 0.00 2.69
300 301 8.547173 TGGGTCTTTTTATATTTGGCATGAAAT 58.453 29.630 0.00 0.00 0.00 2.17
301 302 9.394767 GGGTCTTTTTATATTTGGCATGAAATT 57.605 29.630 0.00 0.00 0.00 1.82
314 315 5.333046 GCATGAAATTAATTTGATGGCCG 57.667 39.130 29.55 13.70 40.30 6.13
315 316 5.049167 GCATGAAATTAATTTGATGGCCGA 58.951 37.500 29.55 6.25 40.30 5.54
316 317 5.050837 GCATGAAATTAATTTGATGGCCGAC 60.051 40.000 29.55 16.06 40.30 4.79
317 318 5.651387 TGAAATTAATTTGATGGCCGACA 57.349 34.783 17.98 3.94 0.00 4.35
318 319 6.219417 TGAAATTAATTTGATGGCCGACAT 57.781 33.333 17.98 0.00 44.18 3.06
319 320 6.638610 TGAAATTAATTTGATGGCCGACATT 58.361 32.000 17.98 0.00 40.72 2.71
320 321 6.534436 TGAAATTAATTTGATGGCCGACATTG 59.466 34.615 17.98 0.00 40.72 2.82
321 322 2.298411 AATTTGATGGCCGACATTGC 57.702 45.000 0.00 0.00 40.72 3.56
322 323 1.184431 ATTTGATGGCCGACATTGCA 58.816 45.000 0.00 0.00 40.72 4.08
323 324 0.243365 TTTGATGGCCGACATTGCAC 59.757 50.000 0.00 0.00 40.72 4.57
324 325 1.921045 TTGATGGCCGACATTGCACG 61.921 55.000 0.00 0.00 40.72 5.34
325 326 3.739782 GATGGCCGACATTGCACGC 62.740 63.158 0.00 0.00 40.72 5.34
327 328 2.817834 GGCCGACATTGCACGCTA 60.818 61.111 0.00 0.00 0.00 4.26
328 329 2.395360 GGCCGACATTGCACGCTAA 61.395 57.895 0.00 0.00 0.00 3.09
329 330 1.499949 GCCGACATTGCACGCTAAA 59.500 52.632 0.00 0.00 0.00 1.85
330 331 0.793104 GCCGACATTGCACGCTAAAC 60.793 55.000 0.00 0.00 0.00 2.01
331 332 0.796312 CCGACATTGCACGCTAAACT 59.204 50.000 0.00 0.00 0.00 2.66
332 333 1.996898 CCGACATTGCACGCTAAACTA 59.003 47.619 0.00 0.00 0.00 2.24
333 334 2.607635 CCGACATTGCACGCTAAACTAT 59.392 45.455 0.00 0.00 0.00 2.12
334 335 3.063452 CCGACATTGCACGCTAAACTATT 59.937 43.478 0.00 0.00 0.00 1.73
335 336 4.436852 CCGACATTGCACGCTAAACTATTT 60.437 41.667 0.00 0.00 0.00 1.40
336 337 4.491942 CGACATTGCACGCTAAACTATTTG 59.508 41.667 0.00 0.00 0.00 2.32
337 338 4.165779 ACATTGCACGCTAAACTATTTGC 58.834 39.130 0.00 0.00 34.51 3.68
338 339 4.082787 ACATTGCACGCTAAACTATTTGCT 60.083 37.500 0.00 0.00 35.50 3.91
339 340 5.123186 ACATTGCACGCTAAACTATTTGCTA 59.877 36.000 0.00 0.00 35.50 3.49
340 341 4.593597 TGCACGCTAAACTATTTGCTAC 57.406 40.909 0.00 0.00 35.50 3.58
341 342 3.997681 TGCACGCTAAACTATTTGCTACA 59.002 39.130 0.00 0.00 35.50 2.74
412 413 9.631452 TTGTTTAATAATGTGCAATTCGATTCA 57.369 25.926 0.00 0.00 0.00 2.57
417 418 8.929827 AATAATGTGCAATTCGATTCATTTGA 57.070 26.923 0.00 0.00 0.00 2.69
418 419 6.636666 AATGTGCAATTCGATTCATTTGAC 57.363 33.333 0.00 0.00 0.00 3.18
430 431 9.905171 TTCGATTCATTTGACATTTTATTGTGA 57.095 25.926 0.00 0.00 0.00 3.58
475 478 3.934457 AAAATCCGCTTCCGTTTGAAT 57.066 38.095 0.00 0.00 31.06 2.57
478 481 1.885560 TCCGCTTCCGTTTGAATCAA 58.114 45.000 0.00 0.00 31.06 2.57
480 483 1.591248 CGCTTCCGTTTGAATCAACG 58.409 50.000 0.00 3.26 31.06 4.10
493 496 2.051345 CAACGCGTTGGAGTTGGC 60.051 61.111 37.79 0.00 46.28 4.52
534 546 7.207383 GCTTGGTATTTTTGTTAGTCTTGGTT 58.793 34.615 0.00 0.00 0.00 3.67
541 553 8.887036 ATTTTTGTTAGTCTTGGTTCCAAATC 57.113 30.769 5.76 2.49 0.00 2.17
544 556 6.817765 TGTTAGTCTTGGTTCCAAATCATC 57.182 37.500 5.76 0.00 0.00 2.92
562 574 3.033764 GCGTTGCGAAGGTGACGA 61.034 61.111 0.00 0.00 37.69 4.20
563 575 2.591311 GCGTTGCGAAGGTGACGAA 61.591 57.895 0.00 0.00 37.69 3.85
564 576 1.487231 CGTTGCGAAGGTGACGAAG 59.513 57.895 0.00 0.00 37.69 3.79
596 608 4.493747 GTCTTCGAGGTCCCGCCG 62.494 72.222 0.00 0.00 43.70 6.46
637 649 2.354539 CAAAAGCCACCGTTGCCG 60.355 61.111 0.00 0.00 0.00 5.69
668 680 0.530650 ATCGATCCGTTGCGCATCTT 60.531 50.000 12.75 0.00 0.00 2.40
675 687 1.796796 GTTGCGCATCTTCTCCCAC 59.203 57.895 12.75 0.00 0.00 4.61
691 703 1.893808 CACCACAGCTTCCGTTGCT 60.894 57.895 0.00 0.00 42.06 3.91
692 704 1.598130 ACCACAGCTTCCGTTGCTC 60.598 57.895 0.00 0.00 38.92 4.26
693 705 2.671177 CCACAGCTTCCGTTGCTCG 61.671 63.158 0.00 0.00 38.92 5.03
775 1152 4.530857 CGGGATGCCGTCTCCACC 62.531 72.222 18.74 0.00 34.24 4.61
848 1226 3.622166 TCGACCATTAAAACCCTCCTC 57.378 47.619 0.00 0.00 0.00 3.71
890 1275 1.001140 CCCCCAAATCCCCCATCTCT 61.001 60.000 0.00 0.00 0.00 3.10
891 1276 0.480252 CCCCAAATCCCCCATCTCTC 59.520 60.000 0.00 0.00 0.00 3.20
892 1277 1.527457 CCCAAATCCCCCATCTCTCT 58.473 55.000 0.00 0.00 0.00 3.10
893 1278 1.423161 CCCAAATCCCCCATCTCTCTC 59.577 57.143 0.00 0.00 0.00 3.20
988 1388 1.150536 CGAGAGGGAGAGGAGGAGG 59.849 68.421 0.00 0.00 0.00 4.30
989 1389 1.349542 CGAGAGGGAGAGGAGGAGGA 61.350 65.000 0.00 0.00 0.00 3.71
990 1390 0.478507 GAGAGGGAGAGGAGGAGGAG 59.521 65.000 0.00 0.00 0.00 3.69
1349 1756 4.148825 GCTCGCGGACATGGACCT 62.149 66.667 6.13 0.00 0.00 3.85
1728 2135 1.062488 AGCTCCACCAGGTGTTCCTT 61.062 55.000 18.82 0.00 43.07 3.36
1746 2153 1.864725 TTGACATGGCCGTCGTCGTA 61.865 55.000 17.33 9.19 38.84 3.43
1761 2168 2.577593 GTACAGTCGCAGGGGGAC 59.422 66.667 5.40 5.40 44.21 4.46
1765 2172 4.021925 AGTCGCAGGGGGACAAGC 62.022 66.667 14.57 0.00 45.88 4.01
1767 2174 3.249189 TCGCAGGGGGACAAGCTT 61.249 61.111 0.00 0.00 0.00 3.74
1768 2175 2.747855 CGCAGGGGGACAAGCTTC 60.748 66.667 0.00 0.00 0.00 3.86
1770 2177 1.676967 GCAGGGGGACAAGCTTCAG 60.677 63.158 0.00 0.00 0.00 3.02
1771 2178 2.069776 CAGGGGGACAAGCTTCAGA 58.930 57.895 0.00 0.00 0.00 3.27
2016 2423 5.163622 ACACCTGCATTTGTGTCTAATATGC 60.164 40.000 10.10 0.00 41.70 3.14
2180 2588 3.203716 TGATTCTGTGCATGAGATGAGC 58.796 45.455 0.00 0.00 0.00 4.26
2237 2645 3.256383 TGCAGATTTATTGTGCTTGCAGT 59.744 39.130 0.00 0.00 38.09 4.40
2258 2666 4.925861 GGCCTGAGCGCCCTGATC 62.926 72.222 2.29 0.00 43.66 2.92
2259 2667 4.166888 GCCTGAGCGCCCTGATCA 62.167 66.667 2.29 0.00 41.60 2.92
2260 2668 2.202987 CCTGAGCGCCCTGATCAC 60.203 66.667 2.29 0.00 38.27 3.06
2262 2670 1.521010 CTGAGCGCCCTGATCACTG 60.521 63.158 2.29 0.00 38.27 3.66
2263 2671 2.236223 CTGAGCGCCCTGATCACTGT 62.236 60.000 2.29 0.00 38.27 3.55
2288 2728 3.010138 ACAAGATAGGCAAGCAGGGTTTA 59.990 43.478 0.00 0.00 0.00 2.01
2298 2738 2.608623 AGCAGGGTTTATTTGTGGCTT 58.391 42.857 0.00 0.00 0.00 4.35
2306 2746 5.163550 GGGTTTATTTGTGGCTTCCTATCAC 60.164 44.000 0.00 0.00 0.00 3.06
2314 2754 4.016444 GTGGCTTCCTATCACCATTTTCA 58.984 43.478 0.00 0.00 34.04 2.69
2353 2793 1.821216 TCAATTGCGGAAAGGAGTCC 58.179 50.000 0.00 0.00 0.00 3.85
2408 2848 5.353400 GGTTCTTGTACTAAACCATGGCTAC 59.647 44.000 13.04 4.57 41.69 3.58
2414 2854 2.277084 CTAAACCATGGCTACGTGTCC 58.723 52.381 13.04 0.00 31.50 4.02
2484 2924 2.159128 ACAGAGATGCGATTCAGTCCAG 60.159 50.000 0.00 0.00 0.00 3.86
2664 3104 7.686438 TTACGAGTAAGAATATATACGGCCA 57.314 36.000 2.24 0.00 0.00 5.36
2666 3106 6.385033 ACGAGTAAGAATATATACGGCCAAC 58.615 40.000 2.24 0.00 0.00 3.77
2667 3107 6.016024 ACGAGTAAGAATATATACGGCCAACA 60.016 38.462 2.24 0.00 0.00 3.33
2669 3109 7.148853 CGAGTAAGAATATATACGGCCAACAAC 60.149 40.741 2.24 0.00 0.00 3.32
2670 3110 7.732996 AGTAAGAATATATACGGCCAACAACT 58.267 34.615 2.24 0.00 0.00 3.16
2671 3111 6.861065 AAGAATATATACGGCCAACAACTG 57.139 37.500 2.24 0.00 0.00 3.16
2674 3114 7.224297 AGAATATATACGGCCAACAACTGATT 58.776 34.615 2.24 0.00 0.00 2.57
2675 3115 8.372459 AGAATATATACGGCCAACAACTGATTA 58.628 33.333 2.24 0.00 0.00 1.75
2676 3116 9.162764 GAATATATACGGCCAACAACTGATTAT 57.837 33.333 2.24 0.00 0.00 1.28
2680 3120 3.882888 ACGGCCAACAACTGATTATATGG 59.117 43.478 2.24 0.00 0.00 2.74
2682 3122 4.261155 CGGCCAACAACTGATTATATGGTG 60.261 45.833 2.24 0.00 0.00 4.17
2683 3123 4.887071 GGCCAACAACTGATTATATGGTGA 59.113 41.667 0.00 0.00 32.22 4.02
2684 3124 5.536161 GGCCAACAACTGATTATATGGTGAT 59.464 40.000 0.00 0.00 32.22 3.06
2686 3126 7.230510 GGCCAACAACTGATTATATGGTGATTA 59.769 37.037 0.00 0.00 32.22 1.75
2701 3141 7.639062 ATGGTGATTATATGGGAAGTTCTCT 57.361 36.000 3.98 0.00 0.00 3.10
2702 3142 7.451731 TGGTGATTATATGGGAAGTTCTCTT 57.548 36.000 3.98 0.00 36.51 2.85
2703 3143 7.872138 TGGTGATTATATGGGAAGTTCTCTTT 58.128 34.615 3.98 0.00 33.64 2.52
2704 3144 7.775093 TGGTGATTATATGGGAAGTTCTCTTTG 59.225 37.037 3.98 0.00 33.64 2.77
2705 3145 7.229506 GGTGATTATATGGGAAGTTCTCTTTGG 59.770 40.741 3.98 0.00 33.64 3.28
2706 3146 7.775561 GTGATTATATGGGAAGTTCTCTTTGGT 59.224 37.037 3.98 0.00 33.64 3.67
2707 3147 7.775093 TGATTATATGGGAAGTTCTCTTTGGTG 59.225 37.037 3.98 0.00 33.64 4.17
2709 3149 4.664688 ATGGGAAGTTCTCTTTGGTGAT 57.335 40.909 3.98 0.00 33.64 3.06
2711 3151 3.394274 TGGGAAGTTCTCTTTGGTGATCA 59.606 43.478 3.98 0.00 33.64 2.92
2712 3152 4.141274 TGGGAAGTTCTCTTTGGTGATCAA 60.141 41.667 3.98 0.00 33.64 2.57
2713 3153 4.216472 GGGAAGTTCTCTTTGGTGATCAAC 59.784 45.833 2.98 2.98 34.67 3.18
2714 3154 4.821805 GGAAGTTCTCTTTGGTGATCAACA 59.178 41.667 10.05 10.05 34.67 3.33
2715 3155 5.299279 GGAAGTTCTCTTTGGTGATCAACAA 59.701 40.000 22.25 22.25 36.00 2.83
2716 3156 5.757850 AGTTCTCTTTGGTGATCAACAAC 57.242 39.130 25.60 13.84 37.81 3.32
2717 3157 5.440610 AGTTCTCTTTGGTGATCAACAACT 58.559 37.500 25.60 15.93 37.81 3.16
2718 3158 5.297776 AGTTCTCTTTGGTGATCAACAACTG 59.702 40.000 25.60 19.84 37.81 3.16
2721 3161 6.064060 TCTCTTTGGTGATCAACAACTGATT 58.936 36.000 25.60 0.00 45.23 2.57
2722 3162 7.223584 TCTCTTTGGTGATCAACAACTGATTA 58.776 34.615 25.60 9.28 45.23 1.75
2724 3164 9.166173 CTCTTTGGTGATCAACAACTGATTATA 57.834 33.333 25.60 7.81 45.23 0.98
2725 3165 9.685276 TCTTTGGTGATCAACAACTGATTATAT 57.315 29.630 25.60 0.00 45.23 0.86
2726 3166 9.726232 CTTTGGTGATCAACAACTGATTATATG 57.274 33.333 25.60 0.51 45.23 1.78
2727 3167 7.806409 TGGTGATCAACAACTGATTATATGG 57.194 36.000 12.03 0.00 45.23 2.74
2728 3168 6.772233 TGGTGATCAACAACTGATTATATGGG 59.228 38.462 12.03 0.00 45.23 4.00
2730 3170 7.502226 GGTGATCAACAACTGATTATATGGGAA 59.498 37.037 5.69 0.00 45.23 3.97
2731 3171 8.562892 GTGATCAACAACTGATTATATGGGAAG 58.437 37.037 0.00 0.00 45.23 3.46
2733 3173 9.125026 GATCAACAACTGATTATATGGGAAGTT 57.875 33.333 0.00 0.00 45.23 2.66
2735 3175 8.328758 TCAACAACTGATTATATGGGAAGTTCT 58.671 33.333 2.25 0.00 0.00 3.01
2737 3177 8.095452 ACAACTGATTATATGGGAAGTTCTCT 57.905 34.615 3.98 0.00 0.00 3.10
2738 3178 8.552296 ACAACTGATTATATGGGAAGTTCTCTT 58.448 33.333 3.98 0.00 36.51 2.85
2742 3231 7.872138 TGATTATATGGGAAGTTCTCTTTGGT 58.128 34.615 3.98 0.00 33.64 3.67
2778 3267 6.315144 TGTTCGTACATATGGTTGAAAGGATG 59.685 38.462 7.80 0.00 0.00 3.51
2779 3268 6.228616 TCGTACATATGGTTGAAAGGATGA 57.771 37.500 7.80 0.00 0.00 2.92
2781 3270 5.815222 CGTACATATGGTTGAAAGGATGACA 59.185 40.000 7.80 0.00 0.00 3.58
2804 3293 3.949132 TGATAGTGTTGCTACCAATGCA 58.051 40.909 0.00 0.00 38.80 3.96
2808 3297 2.751259 AGTGTTGCTACCAATGCATCTG 59.249 45.455 0.00 0.56 40.34 2.90
2832 3321 3.888323 TGAGGCAACAGCTGTCAATTAAA 59.112 39.130 21.95 0.65 41.41 1.52
2842 3331 7.370383 ACAGCTGTCAATTAAATACAACTTGG 58.630 34.615 15.25 0.00 0.00 3.61
2856 3345 1.508632 ACTTGGTTTCGGTGTCGATG 58.491 50.000 0.00 0.00 45.51 3.84
2859 3361 2.357327 TGGTTTCGGTGTCGATGTAG 57.643 50.000 0.00 0.00 45.51 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.388165 CCATTCAAAATAACGTGCATTGCA 59.612 37.500 7.38 7.38 35.60 4.08
5 6 4.201705 CCCATTCAAAATAACGTGCATTGC 60.202 41.667 0.46 0.46 0.00 3.56
6 7 4.201705 GCCCATTCAAAATAACGTGCATTG 60.202 41.667 0.00 0.00 0.00 2.82
7 8 3.932089 GCCCATTCAAAATAACGTGCATT 59.068 39.130 0.00 0.00 0.00 3.56
8 9 3.520569 GCCCATTCAAAATAACGTGCAT 58.479 40.909 0.00 0.00 0.00 3.96
9 10 2.669670 CGCCCATTCAAAATAACGTGCA 60.670 45.455 0.00 0.00 0.00 4.57
10 11 1.917303 CGCCCATTCAAAATAACGTGC 59.083 47.619 0.00 0.00 0.00 5.34
11 12 1.917303 GCGCCCATTCAAAATAACGTG 59.083 47.619 0.00 0.00 0.00 4.49
12 13 1.135228 GGCGCCCATTCAAAATAACGT 60.135 47.619 18.11 0.00 0.00 3.99
13 14 1.134175 AGGCGCCCATTCAAAATAACG 59.866 47.619 26.15 0.00 0.00 3.18
14 15 2.427095 AGAGGCGCCCATTCAAAATAAC 59.573 45.455 26.15 0.00 0.00 1.89
15 16 2.426738 CAGAGGCGCCCATTCAAAATAA 59.573 45.455 26.15 0.00 0.00 1.40
16 17 2.023673 CAGAGGCGCCCATTCAAAATA 58.976 47.619 26.15 0.00 0.00 1.40
17 18 0.819582 CAGAGGCGCCCATTCAAAAT 59.180 50.000 26.15 0.00 0.00 1.82
18 19 0.539438 ACAGAGGCGCCCATTCAAAA 60.539 50.000 26.15 0.00 0.00 2.44
19 20 0.326595 TACAGAGGCGCCCATTCAAA 59.673 50.000 26.15 0.00 0.00 2.69
20 21 0.546122 ATACAGAGGCGCCCATTCAA 59.454 50.000 26.15 4.94 0.00 2.69
21 22 1.419381 TATACAGAGGCGCCCATTCA 58.581 50.000 26.15 6.44 0.00 2.57
22 23 2.289694 ACATATACAGAGGCGCCCATTC 60.290 50.000 26.15 15.21 0.00 2.67
23 24 1.699634 ACATATACAGAGGCGCCCATT 59.300 47.619 26.15 3.93 0.00 3.16
24 25 1.002430 CACATATACAGAGGCGCCCAT 59.998 52.381 26.15 9.49 0.00 4.00
25 26 0.392706 CACATATACAGAGGCGCCCA 59.607 55.000 26.15 3.43 0.00 5.36
26 27 0.951040 GCACATATACAGAGGCGCCC 60.951 60.000 26.15 15.34 0.00 6.13
27 28 1.284982 CGCACATATACAGAGGCGCC 61.285 60.000 21.89 21.89 37.96 6.53
28 29 2.145225 CGCACATATACAGAGGCGC 58.855 57.895 0.00 0.00 37.96 6.53
30 31 1.261619 GCAACGCACATATACAGAGGC 59.738 52.381 0.00 0.00 0.00 4.70
31 32 1.522676 CGCAACGCACATATACAGAGG 59.477 52.381 0.00 0.00 0.00 3.69
32 33 2.193447 ACGCAACGCACATATACAGAG 58.807 47.619 0.00 0.00 0.00 3.35
33 34 2.159296 AGACGCAACGCACATATACAGA 60.159 45.455 0.00 0.00 0.00 3.41
34 35 2.193447 AGACGCAACGCACATATACAG 58.807 47.619 0.00 0.00 0.00 2.74
35 36 2.287393 AGACGCAACGCACATATACA 57.713 45.000 0.00 0.00 0.00 2.29
36 37 6.089016 ACAATATAGACGCAACGCACATATAC 59.911 38.462 0.00 0.00 0.00 1.47
37 38 6.088883 CACAATATAGACGCAACGCACATATA 59.911 38.462 0.00 0.00 0.00 0.86
38 39 4.988540 ACAATATAGACGCAACGCACATAT 59.011 37.500 0.00 0.00 0.00 1.78
39 40 4.208253 CACAATATAGACGCAACGCACATA 59.792 41.667 0.00 0.00 0.00 2.29
40 41 3.001228 CACAATATAGACGCAACGCACAT 59.999 43.478 0.00 0.00 0.00 3.21
41 42 2.347150 CACAATATAGACGCAACGCACA 59.653 45.455 0.00 0.00 0.00 4.57
42 43 2.347452 ACACAATATAGACGCAACGCAC 59.653 45.455 0.00 0.00 0.00 5.34
43 44 2.612604 ACACAATATAGACGCAACGCA 58.387 42.857 0.00 0.00 0.00 5.24
44 45 3.061563 TGAACACAATATAGACGCAACGC 59.938 43.478 0.00 0.00 0.00 4.84
45 46 4.833469 TGAACACAATATAGACGCAACG 57.167 40.909 0.00 0.00 0.00 4.10
46 47 7.845617 TTTTTGAACACAATATAGACGCAAC 57.154 32.000 0.00 0.00 0.00 4.17
73 74 5.695816 ACTTTCAAATTAACGTGCATTGCAT 59.304 32.000 15.49 1.17 41.91 3.96
74 75 5.046529 ACTTTCAAATTAACGTGCATTGCA 58.953 33.333 7.38 7.38 35.60 4.08
75 76 5.574815 ACTTTCAAATTAACGTGCATTGC 57.425 34.783 0.46 0.46 0.00 3.56
89 90 9.602568 TCCGCATGTACTTAATATACTTTCAAA 57.397 29.630 0.00 0.00 0.00 2.69
90 91 9.772973 ATCCGCATGTACTTAATATACTTTCAA 57.227 29.630 0.00 0.00 0.00 2.69
100 101 9.871238 CCTACTTAATATCCGCATGTACTTAAT 57.129 33.333 0.00 0.00 0.00 1.40
101 102 9.081204 TCCTACTTAATATCCGCATGTACTTAA 57.919 33.333 0.00 0.00 0.00 1.85
102 103 8.640063 TCCTACTTAATATCCGCATGTACTTA 57.360 34.615 0.00 0.00 0.00 2.24
103 104 7.534723 TCCTACTTAATATCCGCATGTACTT 57.465 36.000 0.00 0.00 0.00 2.24
104 105 7.719871 ATCCTACTTAATATCCGCATGTACT 57.280 36.000 0.00 0.00 0.00 2.73
105 106 9.680315 GATATCCTACTTAATATCCGCATGTAC 57.320 37.037 0.00 0.00 31.48 2.90
106 107 9.416284 TGATATCCTACTTAATATCCGCATGTA 57.584 33.333 0.00 0.00 35.08 2.29
107 108 8.306313 TGATATCCTACTTAATATCCGCATGT 57.694 34.615 0.00 0.00 35.08 3.21
108 109 9.770097 AATGATATCCTACTTAATATCCGCATG 57.230 33.333 0.00 0.00 35.08 4.06
160 161 9.458374 GCGTGTAGTTAATTTTATGCCAAATAT 57.542 29.630 0.00 0.00 0.00 1.28
161 162 8.679100 AGCGTGTAGTTAATTTTATGCCAAATA 58.321 29.630 0.00 0.00 0.00 1.40
162 163 7.543756 AGCGTGTAGTTAATTTTATGCCAAAT 58.456 30.769 0.00 0.00 0.00 2.32
163 164 6.915349 AGCGTGTAGTTAATTTTATGCCAAA 58.085 32.000 0.00 0.00 0.00 3.28
164 165 6.503589 AGCGTGTAGTTAATTTTATGCCAA 57.496 33.333 0.00 0.00 0.00 4.52
165 166 7.612668 TTAGCGTGTAGTTAATTTTATGCCA 57.387 32.000 0.00 0.00 0.00 4.92
166 167 7.163032 CGTTTAGCGTGTAGTTAATTTTATGCC 59.837 37.037 0.00 0.00 35.54 4.40
167 168 7.304453 GCGTTTAGCGTGTAGTTAATTTTATGC 60.304 37.037 0.00 0.00 43.66 3.14
168 169 8.020942 GCGTTTAGCGTGTAGTTAATTTTATG 57.979 34.615 0.00 0.00 43.66 1.90
185 186 0.179248 GAGCACTCAACGCGTTTAGC 60.179 55.000 28.10 23.94 43.95 3.09
186 187 0.091344 CGAGCACTCAACGCGTTTAG 59.909 55.000 26.93 26.93 0.00 1.85
187 188 0.318022 TCGAGCACTCAACGCGTTTA 60.318 50.000 24.21 14.45 0.00 2.01
188 189 1.590525 TCGAGCACTCAACGCGTTT 60.591 52.632 24.21 6.52 0.00 3.60
189 190 2.027024 TCGAGCACTCAACGCGTT 59.973 55.556 20.79 20.79 0.00 4.84
190 191 2.729862 GTCGAGCACTCAACGCGT 60.730 61.111 5.58 5.58 0.00 6.01
191 192 1.617755 AATGTCGAGCACTCAACGCG 61.618 55.000 3.53 3.53 0.00 6.01
192 193 0.179240 CAATGTCGAGCACTCAACGC 60.179 55.000 0.00 0.00 0.00 4.84
193 194 1.418373 TCAATGTCGAGCACTCAACG 58.582 50.000 0.00 0.00 0.00 4.10
194 195 2.412065 GCTTCAATGTCGAGCACTCAAC 60.412 50.000 0.00 0.00 36.45 3.18
195 196 1.800586 GCTTCAATGTCGAGCACTCAA 59.199 47.619 0.00 0.00 36.45 3.02
196 197 1.270252 TGCTTCAATGTCGAGCACTCA 60.270 47.619 5.06 0.00 41.15 3.41
197 198 1.392853 CTGCTTCAATGTCGAGCACTC 59.607 52.381 5.06 0.00 41.15 3.51
198 199 1.270518 ACTGCTTCAATGTCGAGCACT 60.271 47.619 5.06 0.00 41.15 4.40
199 200 1.127582 GACTGCTTCAATGTCGAGCAC 59.872 52.381 5.06 0.00 41.15 4.40
200 201 1.001293 AGACTGCTTCAATGTCGAGCA 59.999 47.619 8.00 8.00 43.56 4.26
201 202 1.719600 AGACTGCTTCAATGTCGAGC 58.280 50.000 0.00 0.00 36.01 5.03
202 203 4.489810 ACTTAGACTGCTTCAATGTCGAG 58.510 43.478 0.00 0.00 36.01 4.04
203 204 4.486090 GACTTAGACTGCTTCAATGTCGA 58.514 43.478 0.00 0.00 36.01 4.20
204 205 3.301906 CGACTTAGACTGCTTCAATGTCG 59.698 47.826 0.00 0.00 36.57 4.35
205 206 4.238514 ACGACTTAGACTGCTTCAATGTC 58.761 43.478 0.00 0.00 0.00 3.06
206 207 4.258702 ACGACTTAGACTGCTTCAATGT 57.741 40.909 0.00 0.00 0.00 2.71
207 208 4.143030 CCAACGACTTAGACTGCTTCAATG 60.143 45.833 0.00 0.00 0.00 2.82
208 209 3.997021 CCAACGACTTAGACTGCTTCAAT 59.003 43.478 0.00 0.00 0.00 2.57
209 210 3.069016 TCCAACGACTTAGACTGCTTCAA 59.931 43.478 0.00 0.00 0.00 2.69
210 211 2.626266 TCCAACGACTTAGACTGCTTCA 59.374 45.455 0.00 0.00 0.00 3.02
211 212 3.299340 TCCAACGACTTAGACTGCTTC 57.701 47.619 0.00 0.00 0.00 3.86
212 213 3.963428 ATCCAACGACTTAGACTGCTT 57.037 42.857 0.00 0.00 0.00 3.91
213 214 3.258372 TCAATCCAACGACTTAGACTGCT 59.742 43.478 0.00 0.00 0.00 4.24
214 215 3.368236 GTCAATCCAACGACTTAGACTGC 59.632 47.826 0.00 0.00 0.00 4.40
215 216 4.556233 TGTCAATCCAACGACTTAGACTG 58.444 43.478 0.00 0.00 33.18 3.51
216 217 4.866508 TGTCAATCCAACGACTTAGACT 57.133 40.909 0.00 0.00 33.18 3.24
217 218 5.168569 TGATGTCAATCCAACGACTTAGAC 58.831 41.667 0.00 0.00 33.18 2.59
218 219 5.400066 TGATGTCAATCCAACGACTTAGA 57.600 39.130 0.00 0.00 33.18 2.10
219 220 6.668541 AATGATGTCAATCCAACGACTTAG 57.331 37.500 0.00 0.00 33.18 2.18
220 221 6.652900 TCAAATGATGTCAATCCAACGACTTA 59.347 34.615 0.00 0.00 33.18 2.24
221 222 5.473162 TCAAATGATGTCAATCCAACGACTT 59.527 36.000 0.00 0.00 33.18 3.01
222 223 5.003160 TCAAATGATGTCAATCCAACGACT 58.997 37.500 0.00 0.00 33.18 4.18
223 224 5.295431 TCAAATGATGTCAATCCAACGAC 57.705 39.130 0.00 0.00 31.15 4.34
224 225 5.882553 CATCAAATGATGTCAATCCAACGA 58.117 37.500 13.95 0.00 45.10 3.85
237 238 6.183360 CCAGTTAATCTTGGCCATCAAATGAT 60.183 38.462 6.09 1.14 34.56 2.45
238 239 5.127519 CCAGTTAATCTTGGCCATCAAATGA 59.872 40.000 6.09 0.00 34.56 2.57
239 240 5.127519 TCCAGTTAATCTTGGCCATCAAATG 59.872 40.000 6.09 6.05 34.56 2.32
240 241 5.271598 TCCAGTTAATCTTGGCCATCAAAT 58.728 37.500 6.09 0.00 34.56 2.32
241 242 4.671831 TCCAGTTAATCTTGGCCATCAAA 58.328 39.130 6.09 0.00 34.56 2.69
242 243 4.314522 TCCAGTTAATCTTGGCCATCAA 57.685 40.909 6.09 0.00 0.00 2.57
243 244 4.166725 AGATCCAGTTAATCTTGGCCATCA 59.833 41.667 6.09 0.00 29.01 3.07
244 245 4.518211 CAGATCCAGTTAATCTTGGCCATC 59.482 45.833 6.09 0.00 31.05 3.51
245 246 4.467769 CAGATCCAGTTAATCTTGGCCAT 58.532 43.478 6.09 0.00 31.05 4.40
246 247 3.889815 CAGATCCAGTTAATCTTGGCCA 58.110 45.455 0.00 0.00 31.05 5.36
247 248 2.620585 GCAGATCCAGTTAATCTTGGCC 59.379 50.000 0.00 0.00 31.05 5.36
248 249 2.620585 GGCAGATCCAGTTAATCTTGGC 59.379 50.000 0.00 0.00 31.05 4.52
249 250 3.889815 TGGCAGATCCAGTTAATCTTGG 58.110 45.455 0.00 0.00 40.72 3.61
250 251 4.521146 AGTGGCAGATCCAGTTAATCTTG 58.479 43.478 0.00 0.00 46.28 3.02
251 252 4.851639 AGTGGCAGATCCAGTTAATCTT 57.148 40.909 0.00 0.00 46.28 2.40
260 261 0.038166 GACCCAAAGTGGCAGATCCA 59.962 55.000 0.00 0.00 44.18 3.41
261 262 0.329596 AGACCCAAAGTGGCAGATCC 59.670 55.000 0.00 0.00 35.79 3.36
262 263 2.206576 AAGACCCAAAGTGGCAGATC 57.793 50.000 0.00 0.00 35.79 2.75
263 264 2.683211 AAAGACCCAAAGTGGCAGAT 57.317 45.000 0.00 0.00 35.79 2.90
264 265 2.452600 AAAAGACCCAAAGTGGCAGA 57.547 45.000 0.00 0.00 35.79 4.26
265 266 4.871933 ATAAAAAGACCCAAAGTGGCAG 57.128 40.909 0.00 0.00 35.79 4.85
266 267 6.926630 AATATAAAAAGACCCAAAGTGGCA 57.073 33.333 0.00 0.00 35.79 4.92
267 268 6.593770 CCAAATATAAAAAGACCCAAAGTGGC 59.406 38.462 0.00 0.00 35.79 5.01
268 269 6.593770 GCCAAATATAAAAAGACCCAAAGTGG 59.406 38.462 0.00 0.00 37.25 4.00
269 270 7.158021 TGCCAAATATAAAAAGACCCAAAGTG 58.842 34.615 0.00 0.00 0.00 3.16
270 271 7.309770 TGCCAAATATAAAAAGACCCAAAGT 57.690 32.000 0.00 0.00 0.00 2.66
271 272 8.040132 TCATGCCAAATATAAAAAGACCCAAAG 58.960 33.333 0.00 0.00 0.00 2.77
272 273 7.911651 TCATGCCAAATATAAAAAGACCCAAA 58.088 30.769 0.00 0.00 0.00 3.28
273 274 7.487822 TCATGCCAAATATAAAAAGACCCAA 57.512 32.000 0.00 0.00 0.00 4.12
274 275 7.487822 TTCATGCCAAATATAAAAAGACCCA 57.512 32.000 0.00 0.00 0.00 4.51
275 276 8.962884 ATTTCATGCCAAATATAAAAAGACCC 57.037 30.769 0.00 0.00 0.00 4.46
286 287 8.838365 GCCATCAAATTAATTTCATGCCAAATA 58.162 29.630 16.81 0.00 28.43 1.40
287 288 7.201839 GGCCATCAAATTAATTTCATGCCAAAT 60.202 33.333 21.74 0.00 30.78 2.32
288 289 6.095160 GGCCATCAAATTAATTTCATGCCAAA 59.905 34.615 21.74 0.00 30.78 3.28
289 290 5.589452 GGCCATCAAATTAATTTCATGCCAA 59.411 36.000 21.74 3.82 30.78 4.52
290 291 5.124645 GGCCATCAAATTAATTTCATGCCA 58.875 37.500 21.74 3.89 30.78 4.92
291 292 4.211794 CGGCCATCAAATTAATTTCATGCC 59.788 41.667 16.81 18.13 28.43 4.40
292 293 5.049167 TCGGCCATCAAATTAATTTCATGC 58.951 37.500 16.81 12.61 28.43 4.06
293 294 6.041511 TGTCGGCCATCAAATTAATTTCATG 58.958 36.000 15.64 15.64 29.46 3.07
294 295 6.219417 TGTCGGCCATCAAATTAATTTCAT 57.781 33.333 10.53 0.55 0.00 2.57
295 296 5.651387 TGTCGGCCATCAAATTAATTTCA 57.349 34.783 10.53 0.00 0.00 2.69
296 297 6.509997 GCAATGTCGGCCATCAAATTAATTTC 60.510 38.462 10.53 0.00 31.75 2.17
297 298 5.294060 GCAATGTCGGCCATCAAATTAATTT 59.706 36.000 7.64 7.64 31.75 1.82
298 299 4.810491 GCAATGTCGGCCATCAAATTAATT 59.190 37.500 2.24 0.00 31.75 1.40
299 300 4.141981 TGCAATGTCGGCCATCAAATTAAT 60.142 37.500 2.24 0.00 31.75 1.40
300 301 3.194329 TGCAATGTCGGCCATCAAATTAA 59.806 39.130 2.24 0.00 31.75 1.40
301 302 2.757314 TGCAATGTCGGCCATCAAATTA 59.243 40.909 2.24 0.00 31.75 1.40
302 303 1.549620 TGCAATGTCGGCCATCAAATT 59.450 42.857 2.24 0.00 31.75 1.82
303 304 1.135024 GTGCAATGTCGGCCATCAAAT 60.135 47.619 2.24 0.00 31.75 2.32
304 305 0.243365 GTGCAATGTCGGCCATCAAA 59.757 50.000 2.24 0.00 31.75 2.69
305 306 1.882311 GTGCAATGTCGGCCATCAA 59.118 52.632 2.24 0.00 31.75 2.57
306 307 2.397754 CGTGCAATGTCGGCCATCA 61.398 57.895 2.24 0.50 31.75 3.07
307 308 2.404789 CGTGCAATGTCGGCCATC 59.595 61.111 2.24 0.00 31.75 3.51
308 309 2.867793 TAGCGTGCAATGTCGGCCAT 62.868 55.000 2.24 0.00 34.36 4.40
309 310 3.597675 TAGCGTGCAATGTCGGCCA 62.598 57.895 2.24 0.00 0.00 5.36
310 311 1.917782 TTTAGCGTGCAATGTCGGCC 61.918 55.000 0.00 0.00 0.00 6.13
311 312 0.793104 GTTTAGCGTGCAATGTCGGC 60.793 55.000 0.00 0.00 0.00 5.54
312 313 0.796312 AGTTTAGCGTGCAATGTCGG 59.204 50.000 0.00 0.00 0.00 4.79
313 314 3.925688 ATAGTTTAGCGTGCAATGTCG 57.074 42.857 0.00 0.00 0.00 4.35
314 315 4.262976 GCAAATAGTTTAGCGTGCAATGTC 59.737 41.667 0.00 0.00 32.29 3.06
315 316 4.082787 AGCAAATAGTTTAGCGTGCAATGT 60.083 37.500 0.00 0.00 34.44 2.71
316 317 4.414852 AGCAAATAGTTTAGCGTGCAATG 58.585 39.130 0.00 0.00 34.44 2.82
317 318 4.701956 AGCAAATAGTTTAGCGTGCAAT 57.298 36.364 0.00 0.00 34.44 3.56
318 319 4.452795 TGTAGCAAATAGTTTAGCGTGCAA 59.547 37.500 0.00 0.00 34.44 4.08
319 320 3.997681 TGTAGCAAATAGTTTAGCGTGCA 59.002 39.130 0.00 0.00 34.44 4.57
320 321 4.593597 TGTAGCAAATAGTTTAGCGTGC 57.406 40.909 0.00 0.00 0.00 5.34
321 322 8.447787 AAAATTGTAGCAAATAGTTTAGCGTG 57.552 30.769 0.00 0.00 0.00 5.34
378 379 9.926158 ATTGCACATTATTAAACAAACAGATGA 57.074 25.926 0.00 0.00 0.00 2.92
382 383 8.910666 TCGAATTGCACATTATTAAACAAACAG 58.089 29.630 0.00 0.00 0.00 3.16
405 406 9.905171 TTCACAATAAAATGTCAAATGAATCGA 57.095 25.926 0.00 0.00 0.00 3.59
454 457 3.719173 TTCAAACGGAAGCGGATTTTT 57.281 38.095 0.00 0.00 0.00 1.94
455 458 3.254657 TGATTCAAACGGAAGCGGATTTT 59.745 39.130 0.00 0.00 44.83 1.82
475 478 2.539338 GCCAACTCCAACGCGTTGA 61.539 57.895 44.26 30.35 42.24 3.18
478 481 2.386064 TAAGGCCAACTCCAACGCGT 62.386 55.000 5.58 5.58 0.00 6.01
480 483 1.583495 GGTAAGGCCAACTCCAACGC 61.583 60.000 5.01 0.00 37.17 4.84
493 496 3.890674 GCGGTCTGCTTGGTAAGG 58.109 61.111 0.00 0.00 41.73 2.69
554 566 1.007271 CACGTGAGCTTCGTCACCT 60.007 57.895 10.90 0.00 43.45 4.00
555 567 2.022129 CCACGTGAGCTTCGTCACC 61.022 63.158 19.30 0.00 43.45 4.02
556 568 2.658707 GCCACGTGAGCTTCGTCAC 61.659 63.158 19.30 4.56 43.01 3.67
557 569 2.355837 GCCACGTGAGCTTCGTCA 60.356 61.111 19.30 0.00 39.55 4.35
558 570 2.355837 TGCCACGTGAGCTTCGTC 60.356 61.111 19.30 6.17 39.55 4.20
559 571 2.661866 GTGCCACGTGAGCTTCGT 60.662 61.111 19.30 11.15 42.33 3.85
560 572 3.767230 CGTGCCACGTGAGCTTCG 61.767 66.667 19.30 20.33 36.74 3.79
561 573 3.414700 CCGTGCCACGTGAGCTTC 61.415 66.667 19.30 13.94 40.58 3.86
562 574 4.988598 CCCGTGCCACGTGAGCTT 62.989 66.667 19.30 0.00 40.58 3.74
596 608 2.631418 TCGGATTCTGAACACGAGAC 57.369 50.000 12.39 0.00 0.00 3.36
637 649 1.650912 GATCGATGCATGGTGCCAC 59.349 57.895 2.46 0.00 44.23 5.01
654 666 1.447838 GGAGAAGATGCGCAACGGA 60.448 57.895 17.11 0.00 0.00 4.69
662 674 1.028868 GCTGTGGTGGGAGAAGATGC 61.029 60.000 0.00 0.00 0.00 3.91
668 680 2.583441 CGGAAGCTGTGGTGGGAGA 61.583 63.158 0.00 0.00 0.00 3.71
675 687 2.671177 CGAGCAACGGAAGCTGTGG 61.671 63.158 3.20 0.00 43.58 4.17
691 703 9.513906 TTTATTAGGCATGATATTGATTTCCGA 57.486 29.630 0.00 0.00 0.00 4.55
848 1226 3.157949 GGAGAAGGGCGAGAGGGG 61.158 72.222 0.00 0.00 0.00 4.79
1086 1487 4.131088 GTGAGCTCGGTCCCGGTC 62.131 72.222 9.64 2.80 40.25 4.79
1090 1491 3.775654 CTGGGTGAGCTCGGTCCC 61.776 72.222 25.17 25.17 40.26 4.46
1091 1492 3.775654 CCTGGGTGAGCTCGGTCC 61.776 72.222 9.64 11.16 0.00 4.46
1728 2135 2.334181 TACGACGACGGCCATGTCA 61.334 57.895 12.58 0.00 44.46 3.58
1746 2153 2.847234 TTGTCCCCCTGCGACTGT 60.847 61.111 0.00 0.00 0.00 3.55
1761 2168 2.071540 TGCTCGATGTTCTGAAGCTTG 58.928 47.619 2.10 0.00 0.00 4.01
1765 2172 1.728971 GTGGTGCTCGATGTTCTGAAG 59.271 52.381 0.00 0.00 0.00 3.02
1767 2174 0.388520 CGTGGTGCTCGATGTTCTGA 60.389 55.000 0.00 0.00 0.00 3.27
1768 2175 0.667487 ACGTGGTGCTCGATGTTCTG 60.667 55.000 0.00 0.00 0.00 3.02
1770 2177 0.666274 TCACGTGGTGCTCGATGTTC 60.666 55.000 17.00 0.00 32.98 3.18
1771 2178 0.667487 CTCACGTGGTGCTCGATGTT 60.667 55.000 17.00 0.00 32.98 2.71
1954 2361 3.767630 AACTCCGGTGTGGTGTGGC 62.768 63.158 10.44 0.00 43.56 5.01
2071 2478 5.221067 GCTAAATCCTGACGATACAGAGACA 60.221 44.000 9.63 0.00 39.94 3.41
2080 2487 4.944619 TCATCAGCTAAATCCTGACGAT 57.055 40.909 0.00 0.00 41.68 3.73
2180 2588 2.481185 GCAACAAATCCATGCACCAAAG 59.519 45.455 0.00 0.00 39.81 2.77
2213 2621 3.506844 TGCAAGCACAATAAATCTGCAGA 59.493 39.130 20.79 20.79 33.06 4.26
2256 2664 5.420725 TTGCCTATCTTGTGTACAGTGAT 57.579 39.130 0.00 3.20 0.00 3.06
2257 2665 4.820897 CTTGCCTATCTTGTGTACAGTGA 58.179 43.478 0.00 0.00 0.00 3.41
2258 2666 3.372206 GCTTGCCTATCTTGTGTACAGTG 59.628 47.826 0.00 0.00 0.00 3.66
2259 2667 3.007940 TGCTTGCCTATCTTGTGTACAGT 59.992 43.478 0.00 0.00 0.00 3.55
2260 2668 3.599343 TGCTTGCCTATCTTGTGTACAG 58.401 45.455 0.00 0.00 0.00 2.74
2262 2670 2.939103 CCTGCTTGCCTATCTTGTGTAC 59.061 50.000 0.00 0.00 0.00 2.90
2263 2671 2.092968 CCCTGCTTGCCTATCTTGTGTA 60.093 50.000 0.00 0.00 0.00 2.90
2288 2728 3.737559 TGGTGATAGGAAGCCACAAAT 57.262 42.857 0.00 0.00 32.79 2.32
2298 2738 8.108999 TGAGAAAAGATGAAAATGGTGATAGGA 58.891 33.333 0.00 0.00 0.00 2.94
2306 2746 9.647797 TCATCAAATGAGAAAAGATGAAAATGG 57.352 29.630 0.00 0.00 41.30 3.16
2334 2774 1.613255 GGGACTCCTTTCCGCAATTGA 60.613 52.381 10.34 0.00 36.38 2.57
2387 2827 4.221262 ACGTAGCCATGGTTTAGTACAAGA 59.779 41.667 14.67 0.00 0.00 3.02
2408 2848 1.410517 AGCTATGACATGGAGGACACG 59.589 52.381 2.48 0.00 0.00 4.49
2414 2854 1.602851 GCAGCAAGCTATGACATGGAG 59.397 52.381 2.48 0.00 41.15 3.86
2571 3011 4.697352 TGAACTGAGAATAAGAAAGCAGCC 59.303 41.667 0.00 0.00 0.00 4.85
2644 3084 7.871463 AGTTGTTGGCCGTATATATTCTTACTC 59.129 37.037 0.00 0.00 0.00 2.59
2660 3100 4.887071 TCACCATATAATCAGTTGTTGGCC 59.113 41.667 0.00 0.00 0.00 5.36
2675 3115 9.343994 AGAGAACTTCCCATATAATCACCATAT 57.656 33.333 0.00 0.00 0.00 1.78
2676 3116 8.742125 AGAGAACTTCCCATATAATCACCATA 57.258 34.615 0.00 0.00 0.00 2.74
2678 3118 7.451731 AAGAGAACTTCCCATATAATCACCA 57.548 36.000 0.00 0.00 0.00 4.17
2680 3120 7.775561 ACCAAAGAGAACTTCCCATATAATCAC 59.224 37.037 0.00 0.00 35.05 3.06
2682 3122 7.993183 TCACCAAAGAGAACTTCCCATATAATC 59.007 37.037 0.00 0.00 35.05 1.75
2683 3123 7.872138 TCACCAAAGAGAACTTCCCATATAAT 58.128 34.615 0.00 0.00 35.05 1.28
2684 3124 7.265599 TCACCAAAGAGAACTTCCCATATAA 57.734 36.000 0.00 0.00 35.05 0.98
2686 3126 5.779241 TCACCAAAGAGAACTTCCCATAT 57.221 39.130 0.00 0.00 35.05 1.78
2688 3128 4.043310 TGATCACCAAAGAGAACTTCCCAT 59.957 41.667 0.00 0.00 35.05 4.00
2689 3129 3.394274 TGATCACCAAAGAGAACTTCCCA 59.606 43.478 0.00 0.00 35.05 4.37
2690 3130 4.021102 TGATCACCAAAGAGAACTTCCC 57.979 45.455 0.00 0.00 35.05 3.97
2691 3131 4.821805 TGTTGATCACCAAAGAGAACTTCC 59.178 41.667 0.00 0.00 36.36 3.46
2692 3132 6.038714 AGTTGTTGATCACCAAAGAGAACTTC 59.961 38.462 7.31 0.00 36.36 3.01
2694 3134 5.297776 CAGTTGTTGATCACCAAAGAGAACT 59.702 40.000 7.31 3.59 36.36 3.01
2695 3135 5.296780 TCAGTTGTTGATCACCAAAGAGAAC 59.703 40.000 7.31 1.24 36.36 3.01
2696 3136 5.436175 TCAGTTGTTGATCACCAAAGAGAA 58.564 37.500 7.31 0.00 36.36 2.87
2697 3137 5.034852 TCAGTTGTTGATCACCAAAGAGA 57.965 39.130 7.31 3.59 36.36 3.10
2698 3138 5.954296 ATCAGTTGTTGATCACCAAAGAG 57.046 39.130 7.31 1.28 43.03 2.85
2700 3140 9.726232 CATATAATCAGTTGTTGATCACCAAAG 57.274 33.333 7.31 4.04 45.82 2.77
2701 3141 8.685427 CCATATAATCAGTTGTTGATCACCAAA 58.315 33.333 7.31 0.00 45.82 3.28
2702 3142 7.285172 CCCATATAATCAGTTGTTGATCACCAA 59.715 37.037 0.91 0.91 45.82 3.67
2703 3143 6.772233 CCCATATAATCAGTTGTTGATCACCA 59.228 38.462 0.00 0.00 45.82 4.17
2704 3144 6.998074 TCCCATATAATCAGTTGTTGATCACC 59.002 38.462 0.00 0.00 45.82 4.02
2705 3145 8.450578 TTCCCATATAATCAGTTGTTGATCAC 57.549 34.615 0.00 0.00 45.82 3.06
2706 3146 8.274322 ACTTCCCATATAATCAGTTGTTGATCA 58.726 33.333 0.00 0.00 45.82 2.92
2707 3147 8.682936 ACTTCCCATATAATCAGTTGTTGATC 57.317 34.615 0.00 0.00 45.82 2.92
2709 3149 8.328758 AGAACTTCCCATATAATCAGTTGTTGA 58.671 33.333 0.00 0.00 40.85 3.18
2711 3151 8.552296 AGAGAACTTCCCATATAATCAGTTGTT 58.448 33.333 0.00 0.00 0.00 2.83
2712 3152 8.095452 AGAGAACTTCCCATATAATCAGTTGT 57.905 34.615 0.00 0.00 0.00 3.32
2713 3153 8.970859 AAGAGAACTTCCCATATAATCAGTTG 57.029 34.615 0.00 0.00 0.00 3.16
2714 3154 9.401058 CAAAGAGAACTTCCCATATAATCAGTT 57.599 33.333 0.00 0.00 35.05 3.16
2715 3155 7.995488 CCAAAGAGAACTTCCCATATAATCAGT 59.005 37.037 0.00 0.00 35.05 3.41
2716 3156 7.995488 ACCAAAGAGAACTTCCCATATAATCAG 59.005 37.037 0.00 0.00 35.05 2.90
2717 3157 7.775093 CACCAAAGAGAACTTCCCATATAATCA 59.225 37.037 0.00 0.00 35.05 2.57
2718 3158 7.993183 TCACCAAAGAGAACTTCCCATATAATC 59.007 37.037 0.00 0.00 35.05 1.75
2721 3161 6.884472 TCACCAAAGAGAACTTCCCATATA 57.116 37.500 0.00 0.00 35.05 0.86
2722 3162 5.779241 TCACCAAAGAGAACTTCCCATAT 57.221 39.130 0.00 0.00 35.05 1.78
2724 3164 4.043310 TGATCACCAAAGAGAACTTCCCAT 59.957 41.667 0.00 0.00 35.05 4.00
2725 3165 3.394274 TGATCACCAAAGAGAACTTCCCA 59.606 43.478 0.00 0.00 35.05 4.37
2726 3166 3.753797 GTGATCACCAAAGAGAACTTCCC 59.246 47.826 15.31 0.00 35.05 3.97
2727 3167 3.433615 CGTGATCACCAAAGAGAACTTCC 59.566 47.826 20.03 0.00 35.05 3.46
2728 3168 4.307432 TCGTGATCACCAAAGAGAACTTC 58.693 43.478 20.03 0.00 35.05 3.01
2730 3170 4.248859 CATCGTGATCACCAAAGAGAACT 58.751 43.478 20.03 0.00 0.00 3.01
2731 3171 3.997021 ACATCGTGATCACCAAAGAGAAC 59.003 43.478 20.03 0.00 0.00 3.01
2733 3173 3.006859 ACACATCGTGATCACCAAAGAGA 59.993 43.478 20.03 10.47 36.96 3.10
2735 3175 3.401033 ACACATCGTGATCACCAAAGA 57.599 42.857 20.03 11.54 36.96 2.52
2737 3177 2.478514 CGAACACATCGTGATCACCAAA 59.521 45.455 20.03 6.49 46.52 3.28
2738 3178 2.065512 CGAACACATCGTGATCACCAA 58.934 47.619 20.03 9.06 46.52 3.67
2762 3251 9.293404 CTATCAATGTCATCCTTTCAACCATAT 57.707 33.333 0.00 0.00 0.00 1.78
2763 3252 8.274322 ACTATCAATGTCATCCTTTCAACCATA 58.726 33.333 0.00 0.00 0.00 2.74
2764 3253 7.067859 CACTATCAATGTCATCCTTTCAACCAT 59.932 37.037 0.00 0.00 0.00 3.55
2765 3254 6.375174 CACTATCAATGTCATCCTTTCAACCA 59.625 38.462 0.00 0.00 0.00 3.67
2766 3255 6.375455 ACACTATCAATGTCATCCTTTCAACC 59.625 38.462 0.00 0.00 0.00 3.77
2767 3256 7.383102 ACACTATCAATGTCATCCTTTCAAC 57.617 36.000 0.00 0.00 0.00 3.18
2768 3257 7.575532 GCAACACTATCAATGTCATCCTTTCAA 60.576 37.037 0.00 0.00 0.00 2.69
2808 3297 1.024271 TTGACAGCTGTTGCCTCAAC 58.976 50.000 22.65 5.86 43.78 3.18
2815 3304 8.693504 CAAGTTGTATTTAATTGACAGCTGTTG 58.306 33.333 22.65 4.79 35.21 3.33
2832 3321 2.803956 CGACACCGAAACCAAGTTGTAT 59.196 45.455 1.45 0.00 38.22 2.29
2856 3345 6.726490 TCTCACTTCCCCATGTAATACTAC 57.274 41.667 0.00 0.00 0.00 2.73
2859 3361 4.816925 GCTTCTCACTTCCCCATGTAATAC 59.183 45.833 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.