Multiple sequence alignment - TraesCS4A01G247100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G247100 chr4A 100.000 2416 0 0 2178 4593 558215643 558218058 0.000000e+00 4462
1 TraesCS4A01G247100 chr4A 100.000 1109 0 0 889 1997 558214354 558215462 0.000000e+00 2049
2 TraesCS4A01G247100 chr4A 100.000 586 0 0 1 586 558213466 558214051 0.000000e+00 1083
3 TraesCS4A01G247100 chr4B 92.347 1764 87 17 2183 3909 60368788 60367036 0.000000e+00 2466
4 TraesCS4A01G247100 chr4B 91.359 1030 52 13 889 1906 60370230 60369226 0.000000e+00 1375
5 TraesCS4A01G247100 chr4B 95.876 582 21 3 1 579 60370856 60370275 0.000000e+00 939
6 TraesCS4A01G247100 chr4B 94.400 125 6 1 4256 4379 60367024 60366900 1.690000e-44 191
7 TraesCS4A01G247100 chr4B 94.118 68 3 1 4525 4592 60334915 60334849 8.130000e-18 102
8 TraesCS4A01G247100 chr4D 91.205 1751 79 15 2193 3907 41909819 41908108 0.000000e+00 2311
9 TraesCS4A01G247100 chr4D 92.934 1019 45 13 889 1894 41910816 41909812 0.000000e+00 1458
10 TraesCS4A01G247100 chr4D 89.163 609 29 7 1 586 41911463 41910869 0.000000e+00 725
11 TraesCS4A01G247100 chr4D 91.850 319 22 2 3922 4239 58689703 58690018 4.220000e-120 442
12 TraesCS4A01G247100 chr1D 92.212 321 24 1 3919 4239 482483999 482484318 1.950000e-123 453
13 TraesCS4A01G247100 chr7D 92.188 320 19 4 3922 4239 476900907 476900592 9.060000e-122 448
14 TraesCS4A01G247100 chr7D 91.875 320 20 4 3922 4239 245465321 245465006 4.220000e-120 442
15 TraesCS4A01G247100 chr5D 91.850 319 22 2 3922 4239 83786258 83786573 4.220000e-120 442
16 TraesCS4A01G247100 chr5B 91.850 319 22 2 3922 4239 407637020 407636705 4.220000e-120 442
17 TraesCS4A01G247100 chr3D 91.850 319 22 2 3922 4239 82975378 82975693 4.220000e-120 442
18 TraesCS4A01G247100 chr2D 91.850 319 22 2 3922 4239 119417449 119417764 4.220000e-120 442
19 TraesCS4A01G247100 chr2D 91.850 319 22 2 3922 4239 438855905 438855590 4.220000e-120 442


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G247100 chr4A 558213466 558218058 4592 False 2531.333333 4462 100.000000 1 4593 3 chr4A.!!$F1 4592
1 TraesCS4A01G247100 chr4B 60366900 60370856 3956 True 1242.750000 2466 93.495500 1 4379 4 chr4B.!!$R2 4378
2 TraesCS4A01G247100 chr4D 41908108 41911463 3355 True 1498.000000 2311 91.100667 1 3907 3 chr4D.!!$R1 3906

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 565 1.516423 GACCGGCCCAGTAGAGAAC 59.484 63.158 0.0 0.0 0.0 3.01 F
1855 1907 1.150827 TTCATGCTCTGTTCTGTGCG 58.849 50.000 0.0 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1930 1982 0.173481 GATTCTTTTGGAAGGGGCGC 59.827 55.0 0.0 0.0 37.36 6.53 R
3696 3950 0.257039 ATCCCTGCTTTACTGCCCAG 59.743 55.0 0.0 0.0 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.674441 AGAATCAACGGCATCAGCATG 59.326 47.619 0.00 0.00 44.61 4.06
52 53 3.912496 TTACCATGTGATGTCCAGAGG 57.088 47.619 0.00 0.00 0.00 3.69
68 71 5.300792 GTCCAGAGGATGCTATAGTATAGGC 59.699 48.000 17.12 10.68 32.73 3.93
118 121 1.818642 CACCAAGCAGGGAAGAAGAG 58.181 55.000 0.10 0.00 43.89 2.85
218 221 1.823295 GACATCTTGGCCGCTCCTA 59.177 57.895 0.00 0.00 35.26 2.94
539 564 1.684734 GGACCGGCCCAGTAGAGAA 60.685 63.158 0.00 0.00 0.00 2.87
540 565 1.516423 GACCGGCCCAGTAGAGAAC 59.484 63.158 0.00 0.00 0.00 3.01
544 571 1.541310 CGGCCCAGTAGAGAACACCA 61.541 60.000 0.00 0.00 0.00 4.17
1363 1401 1.677552 CACAGGTAAACCTCGCCCT 59.322 57.895 0.00 0.00 46.65 5.19
1516 1554 2.284417 GGAGCACATTCGAAACGGATAC 59.716 50.000 0.00 0.00 0.00 2.24
1522 1560 3.549070 ACATTCGAAACGGATACTTACGC 59.451 43.478 0.00 0.00 0.00 4.42
1526 1564 1.585214 GAAACGGATACTTACGCGTGG 59.415 52.381 24.59 16.92 0.00 4.94
1535 1573 2.485903 ACTTACGCGTGGATGTTTTCA 58.514 42.857 24.59 0.00 0.00 2.69
1586 1624 2.756760 GCTGAATGGGAGCAGAATCAAA 59.243 45.455 0.00 0.00 36.40 2.69
1678 1718 4.758674 ACATGTCTCATTGTCACTGAAAGG 59.241 41.667 0.00 0.00 39.30 3.11
1681 1721 4.040339 TGTCTCATTGTCACTGAAAGGCTA 59.960 41.667 0.00 0.00 39.30 3.93
1749 1789 5.885230 TGAGAAAGTTGACATGCCAATAG 57.115 39.130 0.00 0.00 0.00 1.73
1853 1905 6.094464 TGGAATTATTCATGCTCTGTTCTGTG 59.906 38.462 7.29 0.00 0.00 3.66
1855 1907 1.150827 TTCATGCTCTGTTCTGTGCG 58.849 50.000 0.00 0.00 0.00 5.34
1904 1956 3.214253 TCTGATGCAGAGGCGGAG 58.786 61.111 0.00 0.00 45.35 4.63
1905 1957 2.588314 CTGATGCAGAGGCGGAGC 60.588 66.667 0.00 0.00 44.19 4.70
1918 1970 4.047059 GGAGCGTCGACGGGACAA 62.047 66.667 36.13 0.00 46.42 3.18
1919 1971 2.181021 GAGCGTCGACGGGACAAT 59.819 61.111 36.13 7.73 46.42 2.71
1920 1972 1.872679 GAGCGTCGACGGGACAATC 60.873 63.158 36.13 19.18 46.42 2.67
1921 1973 2.884207 GCGTCGACGGGACAATCC 60.884 66.667 36.13 15.40 46.42 3.01
1922 1974 2.882876 CGTCGACGGGACAATCCT 59.117 61.111 29.70 0.00 46.42 3.24
1931 1983 4.645809 GACAATCCTGGGTCCTGC 57.354 61.111 0.00 0.00 0.00 4.85
1932 1984 1.450312 GACAATCCTGGGTCCTGCG 60.450 63.158 0.00 0.00 0.00 5.18
1933 1985 2.825836 CAATCCTGGGTCCTGCGC 60.826 66.667 0.00 0.00 0.00 6.09
1934 1986 4.115199 AATCCTGGGTCCTGCGCC 62.115 66.667 4.18 0.00 0.00 6.53
1942 1994 4.344865 GTCCTGCGCCCCTTCCAA 62.345 66.667 4.18 0.00 0.00 3.53
1943 1995 3.575247 TCCTGCGCCCCTTCCAAA 61.575 61.111 4.18 0.00 0.00 3.28
1944 1996 2.600173 CCTGCGCCCCTTCCAAAA 60.600 61.111 4.18 0.00 0.00 2.44
1945 1997 2.639327 CCTGCGCCCCTTCCAAAAG 61.639 63.158 4.18 0.00 0.00 2.27
1946 1998 1.603455 CTGCGCCCCTTCCAAAAGA 60.603 57.895 4.18 0.00 34.14 2.52
1947 1999 1.152652 TGCGCCCCTTCCAAAAGAA 60.153 52.632 4.18 0.00 34.14 2.52
1948 2000 0.541764 TGCGCCCCTTCCAAAAGAAT 60.542 50.000 4.18 0.00 34.14 2.40
1949 2001 0.173481 GCGCCCCTTCCAAAAGAATC 59.827 55.000 0.00 0.00 34.14 2.52
1950 2002 1.839424 CGCCCCTTCCAAAAGAATCT 58.161 50.000 0.00 0.00 34.14 2.40
1951 2003 1.474077 CGCCCCTTCCAAAAGAATCTG 59.526 52.381 0.00 0.00 34.14 2.90
1952 2004 2.807676 GCCCCTTCCAAAAGAATCTGA 58.192 47.619 0.00 0.00 34.14 3.27
1953 2005 3.369175 GCCCCTTCCAAAAGAATCTGAT 58.631 45.455 0.00 0.00 34.14 2.90
1954 2006 3.131755 GCCCCTTCCAAAAGAATCTGATG 59.868 47.826 0.00 0.00 34.14 3.07
1955 2007 3.131755 CCCCTTCCAAAAGAATCTGATGC 59.868 47.826 0.00 0.00 34.14 3.91
1956 2008 3.765511 CCCTTCCAAAAGAATCTGATGCA 59.234 43.478 0.00 0.00 34.14 3.96
1957 2009 4.221262 CCCTTCCAAAAGAATCTGATGCAA 59.779 41.667 0.00 0.00 34.14 4.08
1958 2010 5.279607 CCCTTCCAAAAGAATCTGATGCAAA 60.280 40.000 0.00 0.00 34.14 3.68
1959 2011 5.867716 CCTTCCAAAAGAATCTGATGCAAAG 59.132 40.000 0.00 0.00 34.14 2.77
1960 2012 6.294899 CCTTCCAAAAGAATCTGATGCAAAGA 60.295 38.462 5.05 5.05 34.14 2.52
1961 2013 6.263516 TCCAAAAGAATCTGATGCAAAGAG 57.736 37.500 8.29 0.00 0.00 2.85
1962 2014 6.005823 TCCAAAAGAATCTGATGCAAAGAGA 58.994 36.000 8.29 2.44 0.00 3.10
1963 2015 6.662234 TCCAAAAGAATCTGATGCAAAGAGAT 59.338 34.615 8.29 4.54 0.00 2.75
1964 2016 6.752351 CCAAAAGAATCTGATGCAAAGAGATG 59.248 38.462 8.29 2.29 0.00 2.90
1965 2017 5.502153 AAGAATCTGATGCAAAGAGATGC 57.498 39.130 8.29 5.90 46.58 3.91
1966 2018 4.783055 AGAATCTGATGCAAAGAGATGCT 58.217 39.130 7.40 7.40 46.54 3.79
1967 2019 5.926663 AGAATCTGATGCAAAGAGATGCTA 58.073 37.500 10.42 0.00 46.54 3.49
1968 2020 6.354938 AGAATCTGATGCAAAGAGATGCTAA 58.645 36.000 10.42 0.00 46.54 3.09
1969 2021 6.999272 AGAATCTGATGCAAAGAGATGCTAAT 59.001 34.615 10.42 0.00 46.54 1.73
1970 2022 6.804770 ATCTGATGCAAAGAGATGCTAATC 57.195 37.500 8.29 0.00 46.54 1.75
1971 2023 5.061853 TCTGATGCAAAGAGATGCTAATCC 58.938 41.667 0.00 0.00 46.54 3.01
1972 2024 5.045012 TGATGCAAAGAGATGCTAATCCT 57.955 39.130 0.00 0.00 46.54 3.24
1973 2025 6.042437 TCTGATGCAAAGAGATGCTAATCCTA 59.958 38.462 0.00 0.00 46.54 2.94
1974 2026 6.776744 TGATGCAAAGAGATGCTAATCCTAT 58.223 36.000 0.00 0.00 46.54 2.57
1975 2027 7.229308 TGATGCAAAGAGATGCTAATCCTATT 58.771 34.615 0.00 0.00 46.54 1.73
1976 2028 6.872628 TGCAAAGAGATGCTAATCCTATTG 57.127 37.500 0.67 0.00 46.54 1.90
1977 2029 5.240183 TGCAAAGAGATGCTAATCCTATTGC 59.760 40.000 0.00 0.00 46.54 3.56
1978 2030 5.472820 GCAAAGAGATGCTAATCCTATTGCT 59.527 40.000 0.00 0.00 43.06 3.91
1979 2031 6.652481 GCAAAGAGATGCTAATCCTATTGCTA 59.348 38.462 0.00 0.00 43.06 3.49
1980 2032 7.173907 GCAAAGAGATGCTAATCCTATTGCTAA 59.826 37.037 0.00 0.00 43.06 3.09
1981 2033 9.060347 CAAAGAGATGCTAATCCTATTGCTAAA 57.940 33.333 0.00 0.00 32.77 1.85
1982 2034 8.614469 AAGAGATGCTAATCCTATTGCTAAAC 57.386 34.615 0.00 0.00 32.77 2.01
1983 2035 7.972301 AGAGATGCTAATCCTATTGCTAAACT 58.028 34.615 0.00 0.00 32.77 2.66
1984 2036 8.093927 AGAGATGCTAATCCTATTGCTAAACTC 58.906 37.037 0.00 0.00 32.77 3.01
1985 2037 7.739825 AGATGCTAATCCTATTGCTAAACTCA 58.260 34.615 0.00 0.00 32.77 3.41
1986 2038 7.659390 AGATGCTAATCCTATTGCTAAACTCAC 59.341 37.037 0.00 0.00 32.77 3.51
1987 2039 6.889198 TGCTAATCCTATTGCTAAACTCACT 58.111 36.000 0.00 0.00 0.00 3.41
1988 2040 7.338710 TGCTAATCCTATTGCTAAACTCACTT 58.661 34.615 0.00 0.00 0.00 3.16
1989 2041 7.829211 TGCTAATCCTATTGCTAAACTCACTTT 59.171 33.333 0.00 0.00 0.00 2.66
1990 2042 9.326413 GCTAATCCTATTGCTAAACTCACTTTA 57.674 33.333 0.00 0.00 0.00 1.85
1993 2045 9.740710 AATCCTATTGCTAAACTCACTTTAAGT 57.259 29.630 0.00 0.00 0.00 2.24
1994 2046 9.740710 ATCCTATTGCTAAACTCACTTTAAGTT 57.259 29.630 0.00 0.00 38.59 2.66
2202 2414 1.375140 CGCCACTGCTCTGATGTGT 60.375 57.895 0.00 0.00 34.43 3.72
2250 2462 7.667575 ATACACCTCTGTCTTCAACTCATAT 57.332 36.000 0.00 0.00 0.00 1.78
2285 2497 5.583854 AGCATGTGCACATTTTTGTAACAAA 59.416 32.000 29.48 0.00 45.16 2.83
2654 2868 7.719633 TGCTACAAGGTTCAAAGTTCTTCTTAT 59.280 33.333 0.00 0.00 35.02 1.73
2663 2877 5.702670 TCAAAGTTCTTCTTATGCTGTCTGG 59.297 40.000 0.00 0.00 35.02 3.86
2670 2884 4.890158 TCTTATGCTGTCTGGTTTCAGA 57.110 40.909 0.00 0.00 46.81 3.27
2719 2937 0.979665 TTGCTCTTAGGCTCAGCTGT 59.020 50.000 14.67 0.00 34.03 4.40
2785 3004 6.538381 ACTTTGGAAAATTAGCCACAAAAGTG 59.462 34.615 11.39 0.00 33.67 3.16
2795 3014 2.374184 CCACAAAAGTGAAGTGGGTCA 58.626 47.619 0.00 0.00 46.98 4.02
2796 3015 2.958355 CCACAAAAGTGAAGTGGGTCAT 59.042 45.455 0.00 0.00 46.98 3.06
2797 3016 4.141287 CCACAAAAGTGAAGTGGGTCATA 58.859 43.478 0.00 0.00 46.98 2.15
2798 3017 4.023193 CCACAAAAGTGAAGTGGGTCATAC 60.023 45.833 0.00 0.00 46.98 2.39
2799 3018 4.578516 CACAAAAGTGAAGTGGGTCATACA 59.421 41.667 0.00 0.00 0.00 2.29
2800 3019 5.067153 CACAAAAGTGAAGTGGGTCATACAA 59.933 40.000 0.00 0.00 0.00 2.41
2801 3020 5.654650 ACAAAAGTGAAGTGGGTCATACAAA 59.345 36.000 0.00 0.00 0.00 2.83
2802 3021 6.323739 ACAAAAGTGAAGTGGGTCATACAAAT 59.676 34.615 0.00 0.00 0.00 2.32
2803 3022 7.504238 ACAAAAGTGAAGTGGGTCATACAAATA 59.496 33.333 0.00 0.00 0.00 1.40
2804 3023 8.522830 CAAAAGTGAAGTGGGTCATACAAATAT 58.477 33.333 0.00 0.00 0.00 1.28
2838 3057 0.722676 ATAGGGAAGAGTGGGTGGGA 59.277 55.000 0.00 0.00 0.00 4.37
2857 3076 4.082125 GGGACAAACAGGATTGTGAGAAT 58.918 43.478 0.00 0.00 43.31 2.40
2861 3080 5.327732 ACAAACAGGATTGTGAGAATCCAT 58.672 37.500 21.58 8.03 46.70 3.41
2878 3097 1.811965 CCATCTCAATGCCGAACACAA 59.188 47.619 0.00 0.00 0.00 3.33
2886 3105 2.335316 TGCCGAACACAACCTTAGTT 57.665 45.000 0.00 0.00 36.33 2.24
3042 3263 8.630278 TCTGAGTAATACAAGAATACTTTCGC 57.370 34.615 0.00 0.00 36.93 4.70
3043 3264 7.705325 TCTGAGTAATACAAGAATACTTTCGCC 59.295 37.037 0.00 0.00 36.93 5.54
3083 3312 4.162131 AGGGTCAACTGCTGTTTTTCAAAT 59.838 37.500 6.20 0.00 33.52 2.32
3221 3450 3.030291 AGACATCTCTCCCACACTCATC 58.970 50.000 0.00 0.00 0.00 2.92
3240 3469 3.697190 TCTTCTGGAAGCTCCCTATCT 57.303 47.619 5.55 0.00 38.28 1.98
3249 3478 2.043227 AGCTCCCTATCTTACTGTGGC 58.957 52.381 0.00 0.00 0.00 5.01
3281 3510 7.202526 TCCTTGAACAATGTTTTCATTCAGTC 58.797 34.615 0.00 0.00 46.18 3.51
3405 3634 7.741027 ATTCCAGTCTGTGATTATTATGCAG 57.259 36.000 0.00 0.00 0.00 4.41
3481 3734 5.188163 TCAGGTATCGAAAATGGGAGTTACA 59.812 40.000 0.00 0.00 0.00 2.41
3569 3822 1.827789 GTTGCTGCACCTGAACCCA 60.828 57.895 0.00 0.00 0.00 4.51
3593 3846 2.224523 CCTGCACCAGAGGACAAGTAAA 60.225 50.000 0.00 0.00 32.44 2.01
3595 3848 2.152016 GCACCAGAGGACAAGTAAACC 58.848 52.381 0.00 0.00 0.00 3.27
3622 3876 5.398176 TGTACAAGTAAAAACAGCAGACG 57.602 39.130 0.00 0.00 0.00 4.18
3696 3950 1.745653 GTAGTTGATTGCCCTTGCTCC 59.254 52.381 0.00 0.00 38.71 4.70
3711 3965 1.028868 GCTCCTGGGCAGTAAAGCAG 61.029 60.000 0.00 0.00 35.83 4.24
3758 4012 6.575267 TCTGTGTGTAAGCTTGTGTTACTTA 58.425 36.000 9.86 0.00 32.51 2.24
3812 4070 4.858692 GGAACCATTTGATTGACGATGTTG 59.141 41.667 0.00 0.00 0.00 3.33
3851 4109 7.118680 CCAACTTTTGCTGAATGCTCATTAATT 59.881 33.333 0.00 0.00 43.37 1.40
3853 4111 6.091713 ACTTTTGCTGAATGCTCATTAATTGC 59.908 34.615 0.00 3.87 43.37 3.56
3882 4141 9.166173 CATTTTGAATATATCGCCTTCCTATCA 57.834 33.333 0.00 0.00 0.00 2.15
3898 4157 3.070446 CCTATCATGTACGGTTAGCCCAA 59.930 47.826 0.00 0.00 0.00 4.12
3899 4158 3.857157 ATCATGTACGGTTAGCCCAAT 57.143 42.857 0.00 0.00 0.00 3.16
3924 4183 7.936584 TGTTTAAACATTTCTGTACTTGGAGG 58.063 34.615 17.01 0.00 33.36 4.30
3925 4184 7.013846 TGTTTAAACATTTCTGTACTTGGAGGG 59.986 37.037 17.01 0.00 33.36 4.30
3926 4185 4.724279 AACATTTCTGTACTTGGAGGGT 57.276 40.909 0.00 0.00 33.36 4.34
3927 4186 4.021102 ACATTTCTGTACTTGGAGGGTG 57.979 45.455 0.00 0.00 32.49 4.61
3928 4187 2.561478 TTTCTGTACTTGGAGGGTGC 57.439 50.000 0.00 0.00 0.00 5.01
3929 4188 1.729586 TTCTGTACTTGGAGGGTGCT 58.270 50.000 0.00 0.00 0.00 4.40
3930 4189 1.729586 TCTGTACTTGGAGGGTGCTT 58.270 50.000 0.00 0.00 0.00 3.91
3931 4190 1.347707 TCTGTACTTGGAGGGTGCTTG 59.652 52.381 0.00 0.00 0.00 4.01
3932 4191 0.400213 TGTACTTGGAGGGTGCTTGG 59.600 55.000 0.00 0.00 0.00 3.61
3933 4192 0.690762 GTACTTGGAGGGTGCTTGGA 59.309 55.000 0.00 0.00 0.00 3.53
3934 4193 1.282157 GTACTTGGAGGGTGCTTGGAT 59.718 52.381 0.00 0.00 0.00 3.41
3935 4194 0.329596 ACTTGGAGGGTGCTTGGATC 59.670 55.000 0.00 0.00 0.00 3.36
3936 4195 0.394899 CTTGGAGGGTGCTTGGATCC 60.395 60.000 4.20 4.20 0.00 3.36
3937 4196 1.139498 TTGGAGGGTGCTTGGATCCA 61.139 55.000 11.44 11.44 38.26 3.41
3938 4197 1.139498 TGGAGGGTGCTTGGATCCAA 61.139 55.000 25.53 25.53 37.12 3.53
3947 4206 2.245546 TGCTTGGATCCAAGGGATTCAT 59.754 45.455 41.75 0.00 46.02 2.57
3948 4207 3.303049 GCTTGGATCCAAGGGATTCATT 58.697 45.455 41.75 0.00 46.02 2.57
3949 4208 3.708121 GCTTGGATCCAAGGGATTCATTT 59.292 43.478 41.75 0.00 46.02 2.32
3950 4209 4.162888 GCTTGGATCCAAGGGATTCATTTT 59.837 41.667 41.75 0.00 46.02 1.82
3951 4210 5.363580 GCTTGGATCCAAGGGATTCATTTTA 59.636 40.000 41.75 13.60 46.02 1.52
3952 4211 6.462067 GCTTGGATCCAAGGGATTCATTTTAG 60.462 42.308 41.75 21.90 46.02 1.85
3953 4212 6.091076 TGGATCCAAGGGATTCATTTTAGT 57.909 37.500 13.46 0.00 42.31 2.24
3954 4213 6.129179 TGGATCCAAGGGATTCATTTTAGTC 58.871 40.000 13.46 0.00 42.31 2.59
3955 4214 6.068853 TGGATCCAAGGGATTCATTTTAGTCT 60.069 38.462 13.46 0.00 42.31 3.24
3956 4215 6.264067 GGATCCAAGGGATTCATTTTAGTCTG 59.736 42.308 6.95 0.00 43.27 3.51
3957 4216 6.387192 TCCAAGGGATTCATTTTAGTCTGA 57.613 37.500 0.00 0.00 0.00 3.27
3958 4217 6.180472 TCCAAGGGATTCATTTTAGTCTGAC 58.820 40.000 0.00 0.00 0.00 3.51
3959 4218 6.012508 TCCAAGGGATTCATTTTAGTCTGACT 60.013 38.462 15.57 15.57 0.00 3.41
3960 4219 7.182026 TCCAAGGGATTCATTTTAGTCTGACTA 59.818 37.037 13.34 13.34 0.00 2.59
3961 4220 7.829211 CCAAGGGATTCATTTTAGTCTGACTAA 59.171 37.037 22.80 22.80 38.79 2.24
3962 4221 9.231297 CAAGGGATTCATTTTAGTCTGACTAAA 57.769 33.333 29.65 29.65 45.78 1.85
3977 4236 9.921637 AGTCTGACTAAAAATAGTCTCTTCAAG 57.078 33.333 8.91 5.42 44.99 3.02
3978 4237 9.915629 GTCTGACTAAAAATAGTCTCTTCAAGA 57.084 33.333 14.94 7.23 44.99 3.02
3981 4240 9.155975 TGACTAAAAATAGTCTCTTCAAGATGC 57.844 33.333 14.94 0.00 44.99 3.91
3982 4241 9.377312 GACTAAAAATAGTCTCTTCAAGATGCT 57.623 33.333 8.40 0.00 42.29 3.79
3987 4246 9.732130 AAAATAGTCTCTTCAAGATGCTAAAGT 57.268 29.630 0.00 0.00 36.11 2.66
3988 4247 9.732130 AAATAGTCTCTTCAAGATGCTAAAGTT 57.268 29.630 0.00 0.00 36.11 2.66
3989 4248 8.940768 ATAGTCTCTTCAAGATGCTAAAGTTC 57.059 34.615 0.00 0.00 36.11 3.01
3990 4249 6.169800 AGTCTCTTCAAGATGCTAAAGTTCC 58.830 40.000 0.00 0.00 36.11 3.62
3991 4250 5.934625 GTCTCTTCAAGATGCTAAAGTTCCA 59.065 40.000 0.00 0.00 36.11 3.53
3992 4251 6.428159 GTCTCTTCAAGATGCTAAAGTTCCAA 59.572 38.462 0.00 0.00 36.11 3.53
3993 4252 6.652481 TCTCTTCAAGATGCTAAAGTTCCAAG 59.348 38.462 0.00 0.00 0.00 3.61
3994 4253 5.182001 TCTTCAAGATGCTAAAGTTCCAAGC 59.818 40.000 0.00 0.00 36.77 4.01
3998 4257 1.616159 TGCTAAAGTTCCAAGCACCC 58.384 50.000 4.00 0.00 41.15 4.61
3999 4258 0.888619 GCTAAAGTTCCAAGCACCCC 59.111 55.000 0.00 0.00 36.26 4.95
4000 4259 1.547901 GCTAAAGTTCCAAGCACCCCT 60.548 52.381 0.00 0.00 36.26 4.79
4001 4260 2.162681 CTAAAGTTCCAAGCACCCCTG 58.837 52.381 0.00 0.00 0.00 4.45
4002 4261 0.555769 AAAGTTCCAAGCACCCCTGA 59.444 50.000 0.00 0.00 0.00 3.86
4003 4262 0.178990 AAGTTCCAAGCACCCCTGAC 60.179 55.000 0.00 0.00 0.00 3.51
4004 4263 1.062488 AGTTCCAAGCACCCCTGACT 61.062 55.000 0.00 0.00 0.00 3.41
4005 4264 0.690762 GTTCCAAGCACCCCTGACTA 59.309 55.000 0.00 0.00 0.00 2.59
4006 4265 1.073284 GTTCCAAGCACCCCTGACTAA 59.927 52.381 0.00 0.00 0.00 2.24
4007 4266 1.440618 TCCAAGCACCCCTGACTAAA 58.559 50.000 0.00 0.00 0.00 1.85
4008 4267 1.777878 TCCAAGCACCCCTGACTAAAA 59.222 47.619 0.00 0.00 0.00 1.52
4009 4268 2.175931 TCCAAGCACCCCTGACTAAAAA 59.824 45.455 0.00 0.00 0.00 1.94
4010 4269 2.558359 CCAAGCACCCCTGACTAAAAAG 59.442 50.000 0.00 0.00 0.00 2.27
4011 4270 3.486383 CAAGCACCCCTGACTAAAAAGA 58.514 45.455 0.00 0.00 0.00 2.52
4012 4271 3.425162 AGCACCCCTGACTAAAAAGAG 57.575 47.619 0.00 0.00 0.00 2.85
4013 4272 2.040412 AGCACCCCTGACTAAAAAGAGG 59.960 50.000 0.00 0.00 0.00 3.69
4014 4273 2.437413 CACCCCTGACTAAAAAGAGGC 58.563 52.381 0.00 0.00 0.00 4.70
4015 4274 2.040412 CACCCCTGACTAAAAAGAGGCT 59.960 50.000 0.00 0.00 0.00 4.58
4016 4275 3.263425 CACCCCTGACTAAAAAGAGGCTA 59.737 47.826 0.00 0.00 0.00 3.93
4017 4276 3.914435 ACCCCTGACTAAAAAGAGGCTAA 59.086 43.478 0.00 0.00 0.00 3.09
4018 4277 4.352893 ACCCCTGACTAAAAAGAGGCTAAA 59.647 41.667 0.00 0.00 0.00 1.85
4019 4278 5.163023 ACCCCTGACTAAAAAGAGGCTAAAA 60.163 40.000 0.00 0.00 0.00 1.52
4020 4279 5.183331 CCCCTGACTAAAAAGAGGCTAAAAC 59.817 44.000 0.00 0.00 0.00 2.43
4021 4280 6.004574 CCCTGACTAAAAAGAGGCTAAAACT 58.995 40.000 0.00 0.00 0.00 2.66
4022 4281 7.166167 CCCTGACTAAAAAGAGGCTAAAACTA 58.834 38.462 0.00 0.00 0.00 2.24
4023 4282 7.334671 CCCTGACTAAAAAGAGGCTAAAACTAG 59.665 40.741 0.00 0.00 0.00 2.57
4024 4283 7.878644 CCTGACTAAAAAGAGGCTAAAACTAGT 59.121 37.037 0.00 0.00 0.00 2.57
4025 4284 8.828688 TGACTAAAAAGAGGCTAAAACTAGTC 57.171 34.615 14.17 14.17 35.43 2.59
4026 4285 8.648693 TGACTAAAAAGAGGCTAAAACTAGTCT 58.351 33.333 18.57 0.00 35.73 3.24
4027 4286 9.491675 GACTAAAAAGAGGCTAAAACTAGTCTT 57.508 33.333 13.93 0.00 31.19 3.01
4028 4287 9.274206 ACTAAAAAGAGGCTAAAACTAGTCTTG 57.726 33.333 0.00 0.00 31.19 3.02
4029 4288 9.490379 CTAAAAAGAGGCTAAAACTAGTCTTGA 57.510 33.333 0.00 0.00 31.19 3.02
4030 4289 7.971183 AAAAGAGGCTAAAACTAGTCTTGAG 57.029 36.000 0.00 0.00 31.19 3.02
4031 4290 6.919775 AAGAGGCTAAAACTAGTCTTGAGA 57.080 37.500 0.00 0.00 31.19 3.27
4032 4291 6.275494 AGAGGCTAAAACTAGTCTTGAGAC 57.725 41.667 0.00 2.93 45.08 3.36
4079 4338 9.490083 ACCTCTACTAAAATGTGTATTAGTCCT 57.510 33.333 1.78 0.00 40.53 3.85
4080 4339 9.968870 CCTCTACTAAAATGTGTATTAGTCCTC 57.031 37.037 1.78 0.00 40.53 3.71
4087 4346 7.923414 AAATGTGTATTAGTCCTCTTTGTCC 57.077 36.000 0.00 0.00 0.00 4.02
4088 4347 6.875972 ATGTGTATTAGTCCTCTTTGTCCT 57.124 37.500 0.00 0.00 0.00 3.85
4089 4348 6.681729 TGTGTATTAGTCCTCTTTGTCCTT 57.318 37.500 0.00 0.00 0.00 3.36
4090 4349 7.786046 TGTGTATTAGTCCTCTTTGTCCTTA 57.214 36.000 0.00 0.00 0.00 2.69
4091 4350 8.375493 TGTGTATTAGTCCTCTTTGTCCTTAT 57.625 34.615 0.00 0.00 0.00 1.73
4092 4351 8.822805 TGTGTATTAGTCCTCTTTGTCCTTATT 58.177 33.333 0.00 0.00 0.00 1.40
4093 4352 9.668497 GTGTATTAGTCCTCTTTGTCCTTATTT 57.332 33.333 0.00 0.00 0.00 1.40
4098 4357 9.939802 TTAGTCCTCTTTGTCCTTATTTAACTC 57.060 33.333 0.00 0.00 0.00 3.01
4099 4358 7.395617 AGTCCTCTTTGTCCTTATTTAACTCC 58.604 38.462 0.00 0.00 0.00 3.85
4100 4359 7.237887 AGTCCTCTTTGTCCTTATTTAACTCCT 59.762 37.037 0.00 0.00 0.00 3.69
4101 4360 7.549842 GTCCTCTTTGTCCTTATTTAACTCCTC 59.450 40.741 0.00 0.00 0.00 3.71
4102 4361 7.458170 TCCTCTTTGTCCTTATTTAACTCCTCT 59.542 37.037 0.00 0.00 0.00 3.69
4103 4362 7.766738 CCTCTTTGTCCTTATTTAACTCCTCTC 59.233 40.741 0.00 0.00 0.00 3.20
4104 4363 7.621796 TCTTTGTCCTTATTTAACTCCTCTCC 58.378 38.462 0.00 0.00 0.00 3.71
4105 4364 7.458170 TCTTTGTCCTTATTTAACTCCTCTCCT 59.542 37.037 0.00 0.00 0.00 3.69
4106 4365 7.569599 TTGTCCTTATTTAACTCCTCTCCTT 57.430 36.000 0.00 0.00 0.00 3.36
4107 4366 7.569599 TGTCCTTATTTAACTCCTCTCCTTT 57.430 36.000 0.00 0.00 0.00 3.11
4108 4367 7.394816 TGTCCTTATTTAACTCCTCTCCTTTG 58.605 38.462 0.00 0.00 0.00 2.77
4109 4368 7.236847 TGTCCTTATTTAACTCCTCTCCTTTGA 59.763 37.037 0.00 0.00 0.00 2.69
4110 4369 7.549842 GTCCTTATTTAACTCCTCTCCTTTGAC 59.450 40.741 0.00 0.00 0.00 3.18
4111 4370 7.236847 TCCTTATTTAACTCCTCTCCTTTGACA 59.763 37.037 0.00 0.00 0.00 3.58
4112 4371 7.334671 CCTTATTTAACTCCTCTCCTTTGACAC 59.665 40.741 0.00 0.00 0.00 3.67
4113 4372 5.623956 TTTAACTCCTCTCCTTTGACACA 57.376 39.130 0.00 0.00 0.00 3.72
4114 4373 5.623956 TTAACTCCTCTCCTTTGACACAA 57.376 39.130 0.00 0.00 0.00 3.33
4115 4374 3.760580 ACTCCTCTCCTTTGACACAAG 57.239 47.619 0.00 0.00 0.00 3.16
4116 4375 2.224402 ACTCCTCTCCTTTGACACAAGC 60.224 50.000 0.00 0.00 0.00 4.01
4117 4376 1.151668 CCTCTCCTTTGACACAAGCG 58.848 55.000 0.00 0.00 0.00 4.68
4118 4377 1.270305 CCTCTCCTTTGACACAAGCGA 60.270 52.381 0.00 0.00 0.00 4.93
4119 4378 2.064762 CTCTCCTTTGACACAAGCGAG 58.935 52.381 0.00 0.00 0.00 5.03
4120 4379 1.412710 TCTCCTTTGACACAAGCGAGT 59.587 47.619 0.00 0.00 0.00 4.18
4121 4380 2.158957 TCTCCTTTGACACAAGCGAGTT 60.159 45.455 0.00 0.00 0.00 3.01
4122 4381 2.614057 CTCCTTTGACACAAGCGAGTTT 59.386 45.455 0.00 0.00 0.00 2.66
4123 4382 3.013921 TCCTTTGACACAAGCGAGTTTT 58.986 40.909 0.00 0.00 0.00 2.43
4124 4383 3.108144 CCTTTGACACAAGCGAGTTTTG 58.892 45.455 0.00 0.00 0.00 2.44
4125 4384 2.842208 TTGACACAAGCGAGTTTTGG 57.158 45.000 0.00 0.00 0.00 3.28
4126 4385 2.031258 TGACACAAGCGAGTTTTGGA 57.969 45.000 0.00 0.00 0.00 3.53
4127 4386 2.571212 TGACACAAGCGAGTTTTGGAT 58.429 42.857 0.00 0.00 0.00 3.41
4128 4387 2.948979 TGACACAAGCGAGTTTTGGATT 59.051 40.909 0.00 0.00 0.00 3.01
4129 4388 3.243035 TGACACAAGCGAGTTTTGGATTG 60.243 43.478 0.00 0.00 35.00 2.67
4130 4389 2.948979 ACACAAGCGAGTTTTGGATTGA 59.051 40.909 0.00 0.00 33.39 2.57
4131 4390 3.380004 ACACAAGCGAGTTTTGGATTGAA 59.620 39.130 0.00 0.00 33.39 2.69
4132 4391 3.976942 CACAAGCGAGTTTTGGATTGAAG 59.023 43.478 0.00 0.00 33.39 3.02
4133 4392 3.004734 ACAAGCGAGTTTTGGATTGAAGG 59.995 43.478 0.00 0.00 33.39 3.46
4134 4393 2.162681 AGCGAGTTTTGGATTGAAGGG 58.837 47.619 0.00 0.00 0.00 3.95
4135 4394 1.886542 GCGAGTTTTGGATTGAAGGGT 59.113 47.619 0.00 0.00 0.00 4.34
4136 4395 2.296190 GCGAGTTTTGGATTGAAGGGTT 59.704 45.455 0.00 0.00 0.00 4.11
4137 4396 3.243737 GCGAGTTTTGGATTGAAGGGTTT 60.244 43.478 0.00 0.00 0.00 3.27
4138 4397 4.022676 GCGAGTTTTGGATTGAAGGGTTTA 60.023 41.667 0.00 0.00 0.00 2.01
4139 4398 5.699839 CGAGTTTTGGATTGAAGGGTTTAG 58.300 41.667 0.00 0.00 0.00 1.85
4140 4399 5.472137 CGAGTTTTGGATTGAAGGGTTTAGA 59.528 40.000 0.00 0.00 0.00 2.10
4141 4400 6.016610 CGAGTTTTGGATTGAAGGGTTTAGAA 60.017 38.462 0.00 0.00 0.00 2.10
4142 4401 7.290110 AGTTTTGGATTGAAGGGTTTAGAAG 57.710 36.000 0.00 0.00 0.00 2.85
4143 4402 7.066781 AGTTTTGGATTGAAGGGTTTAGAAGA 58.933 34.615 0.00 0.00 0.00 2.87
4144 4403 7.730332 AGTTTTGGATTGAAGGGTTTAGAAGAT 59.270 33.333 0.00 0.00 0.00 2.40
4145 4404 9.020731 GTTTTGGATTGAAGGGTTTAGAAGATA 57.979 33.333 0.00 0.00 0.00 1.98
4146 4405 9.594936 TTTTGGATTGAAGGGTTTAGAAGATAA 57.405 29.630 0.00 0.00 0.00 1.75
4147 4406 9.768215 TTTGGATTGAAGGGTTTAGAAGATAAT 57.232 29.630 0.00 0.00 0.00 1.28
4154 4413 9.920946 TGAAGGGTTTAGAAGATAATAAATGCT 57.079 29.630 0.00 0.00 0.00 3.79
4156 4415 9.920946 AAGGGTTTAGAAGATAATAAATGCTCA 57.079 29.630 0.00 0.00 0.00 4.26
4203 4462 9.928618 TTATTAGTATTTGGATCCAAACATGGA 57.071 29.630 36.31 23.71 46.80 3.41
4213 4472 3.620488 TCCAAACATGGATGAGGTTAGC 58.380 45.455 0.00 0.00 32.09 3.09
4214 4473 3.010027 TCCAAACATGGATGAGGTTAGCA 59.990 43.478 0.00 0.00 32.09 3.49
4215 4474 3.763360 CCAAACATGGATGAGGTTAGCAA 59.237 43.478 0.00 0.00 0.00 3.91
4216 4475 4.142315 CCAAACATGGATGAGGTTAGCAAG 60.142 45.833 0.00 0.00 0.00 4.01
4217 4476 4.307032 AACATGGATGAGGTTAGCAAGT 57.693 40.909 0.00 0.00 0.00 3.16
4218 4477 4.307032 ACATGGATGAGGTTAGCAAGTT 57.693 40.909 0.00 0.00 0.00 2.66
4219 4478 4.666512 ACATGGATGAGGTTAGCAAGTTT 58.333 39.130 0.00 0.00 0.00 2.66
4220 4479 5.079643 ACATGGATGAGGTTAGCAAGTTTT 58.920 37.500 0.00 0.00 0.00 2.43
4221 4480 6.245408 ACATGGATGAGGTTAGCAAGTTTTA 58.755 36.000 0.00 0.00 0.00 1.52
4222 4481 6.375455 ACATGGATGAGGTTAGCAAGTTTTAG 59.625 38.462 0.00 0.00 0.00 1.85
4223 4482 5.876357 TGGATGAGGTTAGCAAGTTTTAGT 58.124 37.500 0.00 0.00 0.00 2.24
4224 4483 5.938125 TGGATGAGGTTAGCAAGTTTTAGTC 59.062 40.000 0.00 0.00 0.00 2.59
4225 4484 5.354513 GGATGAGGTTAGCAAGTTTTAGTCC 59.645 44.000 0.00 0.00 0.00 3.85
4226 4485 4.648651 TGAGGTTAGCAAGTTTTAGTCCC 58.351 43.478 0.00 0.00 0.00 4.46
4227 4486 4.103469 TGAGGTTAGCAAGTTTTAGTCCCA 59.897 41.667 0.00 0.00 0.00 4.37
4228 4487 4.395625 AGGTTAGCAAGTTTTAGTCCCAC 58.604 43.478 0.00 0.00 0.00 4.61
4229 4488 4.104261 AGGTTAGCAAGTTTTAGTCCCACT 59.896 41.667 0.00 0.00 0.00 4.00
4230 4489 5.308759 AGGTTAGCAAGTTTTAGTCCCACTA 59.691 40.000 0.00 0.00 0.00 2.74
4231 4490 5.410746 GGTTAGCAAGTTTTAGTCCCACTAC 59.589 44.000 0.00 0.00 28.93 2.73
4232 4491 4.976540 AGCAAGTTTTAGTCCCACTACT 57.023 40.909 0.00 0.00 28.93 2.57
4233 4492 5.306114 AGCAAGTTTTAGTCCCACTACTT 57.694 39.130 0.00 0.00 28.93 2.24
4234 4493 5.691896 AGCAAGTTTTAGTCCCACTACTTT 58.308 37.500 0.00 0.00 28.93 2.66
4235 4494 6.127101 AGCAAGTTTTAGTCCCACTACTTTT 58.873 36.000 0.00 0.00 28.93 2.27
4236 4495 7.284820 AGCAAGTTTTAGTCCCACTACTTTTA 58.715 34.615 0.00 0.00 28.93 1.52
4237 4496 7.444487 AGCAAGTTTTAGTCCCACTACTTTTAG 59.556 37.037 0.00 0.00 28.93 1.85
4238 4497 7.228108 GCAAGTTTTAGTCCCACTACTTTTAGT 59.772 37.037 0.00 0.00 39.30 2.24
4239 4498 9.117183 CAAGTTTTAGTCCCACTACTTTTAGTT 57.883 33.333 0.00 0.00 36.31 2.24
4241 4500 9.770097 AGTTTTAGTCCCACTACTTTTAGTTAC 57.230 33.333 0.00 0.00 36.31 2.50
4242 4501 8.703336 GTTTTAGTCCCACTACTTTTAGTTACG 58.297 37.037 0.00 0.00 36.31 3.18
4243 4502 5.397142 AGTCCCACTACTTTTAGTTACGG 57.603 43.478 0.00 0.00 36.31 4.02
4244 4503 3.928992 GTCCCACTACTTTTAGTTACGGC 59.071 47.826 0.00 0.00 36.31 5.68
4245 4504 3.577848 TCCCACTACTTTTAGTTACGGCA 59.422 43.478 0.00 0.00 36.31 5.69
4246 4505 4.040217 TCCCACTACTTTTAGTTACGGCAA 59.960 41.667 0.00 0.00 36.31 4.52
4247 4506 4.939439 CCCACTACTTTTAGTTACGGCAAT 59.061 41.667 0.00 0.00 36.31 3.56
4248 4507 5.064325 CCCACTACTTTTAGTTACGGCAATC 59.936 44.000 0.00 0.00 36.31 2.67
4249 4508 5.064325 CCACTACTTTTAGTTACGGCAATCC 59.936 44.000 0.00 0.00 36.31 3.01
4298 4557 3.050275 ACGCCAAGCTTCGCTTCC 61.050 61.111 14.27 0.00 46.77 3.46
4315 4574 2.762535 TCCTTTCTAGCTCCGGTTTG 57.237 50.000 0.00 0.00 0.00 2.93
4326 4585 2.981859 TCCGGTTTGGATTAGCTCTC 57.018 50.000 0.00 0.00 43.74 3.20
4374 4633 1.066645 GGATACTTTGTCGGGTTCGGT 60.067 52.381 0.00 0.00 36.95 4.69
4375 4634 2.265683 GATACTTTGTCGGGTTCGGTC 58.734 52.381 0.00 0.00 36.95 4.79
4376 4635 0.039256 TACTTTGTCGGGTTCGGTCG 60.039 55.000 0.00 0.00 36.95 4.79
4378 4637 2.704342 CTTTGTCGGGTTCGGTCGGT 62.704 60.000 0.00 0.00 36.95 4.69
4379 4638 2.974935 TTTGTCGGGTTCGGTCGGTG 62.975 60.000 0.00 0.00 36.95 4.94
4380 4639 3.982241 GTCGGGTTCGGTCGGTGT 61.982 66.667 0.00 0.00 36.95 4.16
4381 4640 3.980989 TCGGGTTCGGTCGGTGTG 61.981 66.667 0.00 0.00 36.95 3.82
4382 4641 4.289245 CGGGTTCGGTCGGTGTGT 62.289 66.667 0.00 0.00 0.00 3.72
4383 4642 2.663852 GGGTTCGGTCGGTGTGTG 60.664 66.667 0.00 0.00 0.00 3.82
4384 4643 2.107546 GGTTCGGTCGGTGTGTGT 59.892 61.111 0.00 0.00 0.00 3.72
4385 4644 1.952635 GGTTCGGTCGGTGTGTGTC 60.953 63.158 0.00 0.00 0.00 3.67
4386 4645 1.227031 GTTCGGTCGGTGTGTGTCA 60.227 57.895 0.00 0.00 0.00 3.58
4387 4646 0.599204 GTTCGGTCGGTGTGTGTCAT 60.599 55.000 0.00 0.00 0.00 3.06
4388 4647 0.598942 TTCGGTCGGTGTGTGTCATG 60.599 55.000 0.00 0.00 0.00 3.07
4389 4648 2.027073 CGGTCGGTGTGTGTCATGG 61.027 63.158 0.00 0.00 0.00 3.66
4390 4649 2.325082 GGTCGGTGTGTGTCATGGC 61.325 63.158 0.00 0.00 0.00 4.40
4391 4650 2.356913 TCGGTGTGTGTCATGGCG 60.357 61.111 0.00 0.00 0.00 5.69
4392 4651 2.664851 CGGTGTGTGTCATGGCGT 60.665 61.111 0.00 0.00 0.00 5.68
4393 4652 2.667318 CGGTGTGTGTCATGGCGTC 61.667 63.158 0.00 0.00 0.00 5.19
4394 4653 1.301716 GGTGTGTGTCATGGCGTCT 60.302 57.895 0.00 0.00 0.00 4.18
4395 4654 0.884704 GGTGTGTGTCATGGCGTCTT 60.885 55.000 0.00 0.00 0.00 3.01
4396 4655 0.512952 GTGTGTGTCATGGCGTCTTC 59.487 55.000 0.00 0.00 0.00 2.87
4397 4656 0.392706 TGTGTGTCATGGCGTCTTCT 59.607 50.000 0.00 0.00 0.00 2.85
4398 4657 1.071605 GTGTGTCATGGCGTCTTCTC 58.928 55.000 0.00 0.00 0.00 2.87
4399 4658 0.969149 TGTGTCATGGCGTCTTCTCT 59.031 50.000 0.00 0.00 0.00 3.10
4400 4659 1.337167 TGTGTCATGGCGTCTTCTCTG 60.337 52.381 0.00 0.00 0.00 3.35
4401 4660 0.390340 TGTCATGGCGTCTTCTCTGC 60.390 55.000 0.00 0.00 0.00 4.26
4406 4665 2.811317 GCGTCTTCTCTGCCACCG 60.811 66.667 0.00 0.00 0.00 4.94
4407 4666 2.811317 CGTCTTCTCTGCCACCGC 60.811 66.667 0.00 0.00 0.00 5.68
4408 4667 2.659610 GTCTTCTCTGCCACCGCT 59.340 61.111 0.00 0.00 35.36 5.52
4409 4668 1.446966 GTCTTCTCTGCCACCGCTC 60.447 63.158 0.00 0.00 35.36 5.03
4410 4669 1.607756 TCTTCTCTGCCACCGCTCT 60.608 57.895 0.00 0.00 35.36 4.09
4411 4670 1.447489 CTTCTCTGCCACCGCTCTG 60.447 63.158 0.00 0.00 35.36 3.35
4412 4671 1.881903 CTTCTCTGCCACCGCTCTGA 61.882 60.000 0.00 0.00 35.36 3.27
4413 4672 2.125753 CTCTGCCACCGCTCTGAC 60.126 66.667 0.00 0.00 35.36 3.51
4414 4673 3.655810 CTCTGCCACCGCTCTGACC 62.656 68.421 0.00 0.00 35.36 4.02
4429 4688 4.007323 ACCGGCTGGGGTCTACCT 62.007 66.667 18.00 0.00 41.60 3.08
4430 4689 2.687566 CCGGCTGGGGTCTACCTT 60.688 66.667 2.57 0.00 40.03 3.50
4431 4690 2.298661 CCGGCTGGGGTCTACCTTT 61.299 63.158 2.57 0.00 40.03 3.11
4432 4691 1.683441 CGGCTGGGGTCTACCTTTT 59.317 57.895 0.00 0.00 40.03 2.27
4433 4692 0.037734 CGGCTGGGGTCTACCTTTTT 59.962 55.000 0.00 0.00 40.03 1.94
4458 4717 4.494515 AAAAAGGCTCGGGTCCAC 57.505 55.556 0.00 0.00 0.00 4.02
4459 4718 1.228459 AAAAAGGCTCGGGTCCACC 60.228 57.895 0.00 0.00 0.00 4.61
4460 4719 1.716028 AAAAAGGCTCGGGTCCACCT 61.716 55.000 0.00 0.00 36.97 4.00
4461 4720 2.125766 AAAAGGCTCGGGTCCACCTC 62.126 60.000 0.00 0.00 36.97 3.85
4465 4724 3.077556 CTCGGGTCCACCTCCCAG 61.078 72.222 1.91 0.00 44.81 4.45
4466 4725 3.907027 CTCGGGTCCACCTCCCAGT 62.907 68.421 1.91 0.00 44.81 4.00
4467 4726 3.706373 CGGGTCCACCTCCCAGTG 61.706 72.222 1.91 0.00 44.81 3.66
4468 4727 2.203938 GGGTCCACCTCCCAGTGA 60.204 66.667 0.00 0.00 44.05 3.41
4469 4728 1.616628 GGGTCCACCTCCCAGTGAT 60.617 63.158 0.00 0.00 44.05 3.06
4470 4729 0.326238 GGGTCCACCTCCCAGTGATA 60.326 60.000 0.00 0.00 44.05 2.15
4471 4730 1.123928 GGTCCACCTCCCAGTGATAG 58.876 60.000 0.00 0.00 40.34 2.08
4472 4731 1.343075 GGTCCACCTCCCAGTGATAGA 60.343 57.143 0.00 0.00 40.34 1.98
4473 4732 2.467880 GTCCACCTCCCAGTGATAGAA 58.532 52.381 0.00 0.00 40.34 2.10
4474 4733 2.432510 GTCCACCTCCCAGTGATAGAAG 59.567 54.545 0.00 0.00 40.34 2.85
4475 4734 1.765314 CCACCTCCCAGTGATAGAAGG 59.235 57.143 0.00 0.00 40.34 3.46
4476 4735 2.472029 CACCTCCCAGTGATAGAAGGT 58.528 52.381 0.00 0.00 40.34 3.50
4477 4736 3.630054 CCACCTCCCAGTGATAGAAGGTA 60.630 52.174 0.00 0.00 40.34 3.08
4478 4737 3.639094 CACCTCCCAGTGATAGAAGGTAG 59.361 52.174 0.00 0.00 40.34 3.18
4479 4738 3.235200 CCTCCCAGTGATAGAAGGTAGG 58.765 54.545 0.00 0.00 0.00 3.18
4480 4739 3.235200 CTCCCAGTGATAGAAGGTAGGG 58.765 54.545 0.00 0.00 36.38 3.53
4481 4740 1.694696 CCCAGTGATAGAAGGTAGGGC 59.305 57.143 0.00 0.00 0.00 5.19
4482 4741 2.398588 CCAGTGATAGAAGGTAGGGCA 58.601 52.381 0.00 0.00 0.00 5.36
4483 4742 2.771943 CCAGTGATAGAAGGTAGGGCAA 59.228 50.000 0.00 0.00 0.00 4.52
4484 4743 3.392616 CCAGTGATAGAAGGTAGGGCAAT 59.607 47.826 0.00 0.00 0.00 3.56
4485 4744 4.141390 CCAGTGATAGAAGGTAGGGCAATT 60.141 45.833 0.00 0.00 0.00 2.32
4486 4745 5.440610 CAGTGATAGAAGGTAGGGCAATTT 58.559 41.667 0.00 0.00 0.00 1.82
4487 4746 5.529060 CAGTGATAGAAGGTAGGGCAATTTC 59.471 44.000 0.00 0.00 0.00 2.17
4488 4747 5.430089 AGTGATAGAAGGTAGGGCAATTTCT 59.570 40.000 0.00 0.00 33.15 2.52
4489 4748 6.069381 AGTGATAGAAGGTAGGGCAATTTCTT 60.069 38.462 0.00 0.00 31.19 2.52
4490 4749 6.603599 GTGATAGAAGGTAGGGCAATTTCTTT 59.396 38.462 0.00 0.00 31.19 2.52
4491 4750 7.122799 GTGATAGAAGGTAGGGCAATTTCTTTT 59.877 37.037 0.00 0.00 31.19 2.27
4492 4751 7.673926 TGATAGAAGGTAGGGCAATTTCTTTTT 59.326 33.333 0.00 0.00 31.19 1.94
4515 4774 3.648339 TTTCGTGGATATACGTAGGGC 57.352 47.619 0.08 0.00 44.06 5.19
4516 4775 2.275134 TCGTGGATATACGTAGGGCA 57.725 50.000 0.08 0.00 44.06 5.36
4517 4776 2.585330 TCGTGGATATACGTAGGGCAA 58.415 47.619 0.08 0.00 44.06 4.52
4518 4777 2.957680 TCGTGGATATACGTAGGGCAAA 59.042 45.455 0.08 0.00 44.06 3.68
4519 4778 3.575256 TCGTGGATATACGTAGGGCAAAT 59.425 43.478 0.08 0.00 44.06 2.32
4520 4779 3.678072 CGTGGATATACGTAGGGCAAATG 59.322 47.826 0.08 0.00 39.13 2.32
4521 4780 4.559906 CGTGGATATACGTAGGGCAAATGA 60.560 45.833 0.08 0.00 39.13 2.57
4522 4781 5.488341 GTGGATATACGTAGGGCAAATGAT 58.512 41.667 0.08 0.00 0.00 2.45
4523 4782 5.581085 GTGGATATACGTAGGGCAAATGATC 59.419 44.000 0.08 0.00 0.00 2.92
4524 4783 4.804139 GGATATACGTAGGGCAAATGATCG 59.196 45.833 0.08 0.00 0.00 3.69
4525 4784 5.393787 GGATATACGTAGGGCAAATGATCGA 60.394 44.000 0.08 0.00 0.00 3.59
4526 4785 2.225068 ACGTAGGGCAAATGATCGAG 57.775 50.000 0.00 0.00 0.00 4.04
4527 4786 0.861837 CGTAGGGCAAATGATCGAGC 59.138 55.000 0.00 0.00 0.00 5.03
4528 4787 1.806247 CGTAGGGCAAATGATCGAGCA 60.806 52.381 5.53 5.53 0.00 4.26
4529 4788 1.869767 GTAGGGCAAATGATCGAGCAG 59.130 52.381 10.08 0.00 0.00 4.24
4530 4789 0.465097 AGGGCAAATGATCGAGCAGG 60.465 55.000 10.08 2.31 0.00 4.85
4531 4790 0.749454 GGGCAAATGATCGAGCAGGT 60.749 55.000 10.08 0.00 0.00 4.00
4532 4791 0.659957 GGCAAATGATCGAGCAGGTC 59.340 55.000 10.08 0.00 0.00 3.85
4533 4792 1.661341 GCAAATGATCGAGCAGGTCT 58.339 50.000 10.08 0.00 0.00 3.85
4534 4793 1.596727 GCAAATGATCGAGCAGGTCTC 59.403 52.381 10.08 0.00 38.47 3.36
4542 4801 3.863407 GAGCAGGTCTCGGGAAAAT 57.137 52.632 0.00 0.00 31.20 1.82
4543 4802 1.373570 GAGCAGGTCTCGGGAAAATG 58.626 55.000 0.00 0.00 31.20 2.32
4544 4803 0.984230 AGCAGGTCTCGGGAAAATGA 59.016 50.000 0.00 0.00 0.00 2.57
4545 4804 1.351017 AGCAGGTCTCGGGAAAATGAA 59.649 47.619 0.00 0.00 0.00 2.57
4546 4805 2.159382 GCAGGTCTCGGGAAAATGAAA 58.841 47.619 0.00 0.00 0.00 2.69
4547 4806 2.755103 GCAGGTCTCGGGAAAATGAAAT 59.245 45.455 0.00 0.00 0.00 2.17
4548 4807 3.428045 GCAGGTCTCGGGAAAATGAAATG 60.428 47.826 0.00 0.00 0.00 2.32
4549 4808 3.129287 CAGGTCTCGGGAAAATGAAATGG 59.871 47.826 0.00 0.00 0.00 3.16
4550 4809 2.427095 GGTCTCGGGAAAATGAAATGGG 59.573 50.000 0.00 0.00 0.00 4.00
4551 4810 2.099405 TCTCGGGAAAATGAAATGGGC 58.901 47.619 0.00 0.00 0.00 5.36
4552 4811 1.136891 CTCGGGAAAATGAAATGGGCC 59.863 52.381 0.00 0.00 0.00 5.80
4553 4812 0.901124 CGGGAAAATGAAATGGGCCA 59.099 50.000 9.61 9.61 0.00 5.36
4554 4813 1.134729 CGGGAAAATGAAATGGGCCAG 60.135 52.381 13.78 0.00 0.00 4.85
4555 4814 1.407299 GGGAAAATGAAATGGGCCAGC 60.407 52.381 13.78 4.49 0.00 4.85
4556 4815 1.556451 GGAAAATGAAATGGGCCAGCT 59.444 47.619 13.78 0.00 0.00 4.24
4557 4816 2.765699 GGAAAATGAAATGGGCCAGCTA 59.234 45.455 13.78 0.00 0.00 3.32
4558 4817 3.181472 GGAAAATGAAATGGGCCAGCTAG 60.181 47.826 13.78 0.00 0.00 3.42
4559 4818 2.077687 AATGAAATGGGCCAGCTAGG 57.922 50.000 13.78 0.00 41.84 3.02
4569 4828 2.521950 CAGCTAGGCCGCTCCCTA 60.522 66.667 1.63 0.12 38.41 3.53
4570 4829 1.910772 CAGCTAGGCCGCTCCCTAT 60.911 63.158 1.63 0.00 38.41 2.57
4571 4830 1.608046 AGCTAGGCCGCTCCCTATC 60.608 63.158 0.00 0.00 36.88 2.08
4572 4831 2.995872 GCTAGGCCGCTCCCTATCG 61.996 68.421 0.00 0.00 36.88 2.92
4573 4832 2.989824 TAGGCCGCTCCCTATCGC 60.990 66.667 0.00 0.00 36.41 4.58
4574 4833 3.508967 TAGGCCGCTCCCTATCGCT 62.509 63.158 0.00 0.00 36.41 4.93
4575 4834 2.996470 TAGGCCGCTCCCTATCGCTT 62.996 60.000 0.00 0.00 36.41 4.68
4576 4835 2.663188 GCCGCTCCCTATCGCTTG 60.663 66.667 0.00 0.00 0.00 4.01
4577 4836 2.029666 CCGCTCCCTATCGCTTGG 59.970 66.667 0.00 0.00 0.00 3.61
4578 4837 2.029666 CGCTCCCTATCGCTTGGG 59.970 66.667 0.00 0.00 44.66 4.12
4579 4838 2.281139 GCTCCCTATCGCTTGGGC 60.281 66.667 0.43 0.00 43.04 5.36
4580 4839 2.427753 CTCCCTATCGCTTGGGCC 59.572 66.667 0.00 0.00 43.04 5.80
4581 4840 3.521529 CTCCCTATCGCTTGGGCCG 62.522 68.421 0.43 0.00 43.04 6.13
4582 4841 4.626081 CCCTATCGCTTGGGCCGG 62.626 72.222 0.00 0.00 36.61 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.620115 CTGGACATCACATGGTAATGGC 59.380 50.000 0.00 0.00 38.19 4.40
52 53 4.822896 ACGGCTAGCCTATACTATAGCATC 59.177 45.833 30.55 0.00 41.92 3.91
68 71 2.876368 CTTTGGCCTGGGACGGCTAG 62.876 65.000 3.32 0.00 44.81 3.42
118 121 1.892474 CTCCCTCTCCGATCCATTCTC 59.108 57.143 0.00 0.00 0.00 2.87
516 541 1.613928 TACTGGGCCGGTCCAATCA 60.614 57.895 31.08 14.28 36.21 2.57
539 564 3.009115 CCCATCCCGTCCTGGTGT 61.009 66.667 0.00 0.00 35.15 4.16
540 565 4.489771 GCCCATCCCGTCCTGGTG 62.490 72.222 0.00 0.00 35.15 4.17
1131 1158 2.267642 CGGAACCCAGCGGAATCA 59.732 61.111 0.00 0.00 0.00 2.57
1295 1333 2.115427 TCAATGAAGACCCTGGCGATA 58.885 47.619 0.00 0.00 0.00 2.92
1363 1401 3.009033 AGGATGTACTAAAACCAGCTGCA 59.991 43.478 8.66 0.00 0.00 4.41
1516 1554 3.740044 ATGAAAACATCCACGCGTAAG 57.260 42.857 13.44 6.80 43.44 2.34
1522 1560 5.119931 TCAAAGGAATGAAAACATCCACG 57.880 39.130 0.00 0.00 35.62 4.94
1526 1564 7.656948 TGGTCAAATCAAAGGAATGAAAACATC 59.343 33.333 0.00 0.00 32.06 3.06
1535 1573 6.168389 GCTTTCATGGTCAAATCAAAGGAAT 58.832 36.000 0.00 0.00 0.00 3.01
1647 1685 6.207221 AGTGACAATGAGACATGTTTATTGCA 59.793 34.615 20.95 17.83 33.28 4.08
1648 1686 6.525628 CAGTGACAATGAGACATGTTTATTGC 59.474 38.462 20.95 16.37 33.28 3.56
1667 1705 2.450609 TCCGTTAGCCTTTCAGTGAC 57.549 50.000 0.00 0.00 0.00 3.67
1678 1718 8.321716 CGCAATTTCTATCTATATTCCGTTAGC 58.678 37.037 0.00 0.00 0.00 3.09
1681 1721 9.136952 GTACGCAATTTCTATCTATATTCCGTT 57.863 33.333 0.00 0.00 0.00 4.44
1810 1859 2.093816 TCCATGCAGTGCTCTTCTACAG 60.094 50.000 17.60 0.00 0.00 2.74
1811 1860 1.901833 TCCATGCAGTGCTCTTCTACA 59.098 47.619 17.60 0.00 0.00 2.74
1902 1954 1.872679 GATTGTCCCGTCGACGCTC 60.873 63.158 31.73 21.88 45.23 5.03
1903 1955 2.181021 GATTGTCCCGTCGACGCT 59.819 61.111 31.73 11.25 45.23 5.07
1904 1956 2.884207 GGATTGTCCCGTCGACGC 60.884 66.667 31.73 18.82 45.23 5.19
1905 1957 1.516386 CAGGATTGTCCCGTCGACG 60.516 63.158 30.33 30.33 45.23 5.12
1906 1958 1.153628 CCAGGATTGTCCCGTCGAC 60.154 63.158 5.18 5.18 42.33 4.20
1907 1959 2.355986 CCCAGGATTGTCCCGTCGA 61.356 63.158 0.00 0.00 37.19 4.20
1908 1960 2.186903 CCCAGGATTGTCCCGTCG 59.813 66.667 0.00 0.00 37.19 5.12
1909 1961 1.221021 GACCCAGGATTGTCCCGTC 59.779 63.158 0.00 0.00 37.19 4.79
1910 1962 2.298661 GGACCCAGGATTGTCCCGT 61.299 63.158 2.54 0.00 44.32 5.28
1911 1963 2.590092 GGACCCAGGATTGTCCCG 59.410 66.667 2.54 0.00 44.32 5.14
1914 1966 1.450312 CGCAGGACCCAGGATTGTC 60.450 63.158 0.00 0.00 0.00 3.18
1915 1967 2.671070 CGCAGGACCCAGGATTGT 59.329 61.111 0.00 0.00 0.00 2.71
1916 1968 2.825836 GCGCAGGACCCAGGATTG 60.826 66.667 0.30 0.00 0.00 2.67
1917 1969 4.115199 GGCGCAGGACCCAGGATT 62.115 66.667 10.83 0.00 0.00 3.01
1925 1977 3.860930 TTTGGAAGGGGCGCAGGAC 62.861 63.158 10.83 0.00 0.00 3.85
1926 1978 3.140073 TTTTGGAAGGGGCGCAGGA 62.140 57.895 10.83 0.00 0.00 3.86
1927 1979 2.600173 TTTTGGAAGGGGCGCAGG 60.600 61.111 10.83 0.00 0.00 4.85
1928 1980 1.178534 TTCTTTTGGAAGGGGCGCAG 61.179 55.000 10.83 0.00 33.56 5.18
1929 1981 0.541764 ATTCTTTTGGAAGGGGCGCA 60.542 50.000 10.83 0.00 37.36 6.09
1930 1982 0.173481 GATTCTTTTGGAAGGGGCGC 59.827 55.000 0.00 0.00 37.36 6.53
1931 1983 1.474077 CAGATTCTTTTGGAAGGGGCG 59.526 52.381 0.00 0.00 37.36 6.13
1932 1984 2.807676 TCAGATTCTTTTGGAAGGGGC 58.192 47.619 0.00 0.00 37.36 5.80
1933 1985 3.131755 GCATCAGATTCTTTTGGAAGGGG 59.868 47.826 0.00 0.00 37.36 4.79
1934 1986 3.765511 TGCATCAGATTCTTTTGGAAGGG 59.234 43.478 0.00 0.00 37.36 3.95
1935 1987 5.395682 TTGCATCAGATTCTTTTGGAAGG 57.604 39.130 0.00 0.00 37.36 3.46
1936 1988 6.684686 TCTTTGCATCAGATTCTTTTGGAAG 58.315 36.000 0.00 0.00 37.36 3.46
1937 1989 6.491062 TCTCTTTGCATCAGATTCTTTTGGAA 59.509 34.615 0.00 0.00 38.41 3.53
1938 1990 6.005823 TCTCTTTGCATCAGATTCTTTTGGA 58.994 36.000 0.00 0.00 0.00 3.53
1939 1991 6.263516 TCTCTTTGCATCAGATTCTTTTGG 57.736 37.500 0.00 0.00 0.00 3.28
1940 1992 6.253727 GCATCTCTTTGCATCAGATTCTTTTG 59.746 38.462 0.00 0.00 42.31 2.44
1941 1993 6.153000 AGCATCTCTTTGCATCAGATTCTTTT 59.847 34.615 0.00 0.00 45.23 2.27
1942 1994 5.652891 AGCATCTCTTTGCATCAGATTCTTT 59.347 36.000 0.00 0.00 45.23 2.52
1943 1995 5.194432 AGCATCTCTTTGCATCAGATTCTT 58.806 37.500 0.00 0.00 45.23 2.52
1944 1996 4.783055 AGCATCTCTTTGCATCAGATTCT 58.217 39.130 0.00 0.00 45.23 2.40
1945 1997 6.615264 TTAGCATCTCTTTGCATCAGATTC 57.385 37.500 0.00 0.00 45.23 2.52
1946 1998 6.207025 GGATTAGCATCTCTTTGCATCAGATT 59.793 38.462 0.00 0.00 45.23 2.40
1947 1999 5.706369 GGATTAGCATCTCTTTGCATCAGAT 59.294 40.000 0.00 0.00 45.23 2.90
1948 2000 5.061853 GGATTAGCATCTCTTTGCATCAGA 58.938 41.667 0.00 0.00 45.23 3.27
1949 2001 5.064558 AGGATTAGCATCTCTTTGCATCAG 58.935 41.667 0.00 0.00 45.23 2.90
1950 2002 5.045012 AGGATTAGCATCTCTTTGCATCA 57.955 39.130 0.00 0.00 45.23 3.07
1951 2003 7.528307 CAATAGGATTAGCATCTCTTTGCATC 58.472 38.462 0.00 0.00 45.23 3.91
1952 2004 6.072064 GCAATAGGATTAGCATCTCTTTGCAT 60.072 38.462 0.00 0.00 45.23 3.96
1953 2005 5.240183 GCAATAGGATTAGCATCTCTTTGCA 59.760 40.000 0.00 0.00 45.23 4.08
1954 2006 5.472820 AGCAATAGGATTAGCATCTCTTTGC 59.527 40.000 0.00 0.00 43.09 3.68
1955 2007 8.613060 TTAGCAATAGGATTAGCATCTCTTTG 57.387 34.615 0.00 0.00 0.00 2.77
1956 2008 9.061435 GTTTAGCAATAGGATTAGCATCTCTTT 57.939 33.333 0.00 0.00 0.00 2.52
1957 2009 8.435982 AGTTTAGCAATAGGATTAGCATCTCTT 58.564 33.333 0.00 0.00 0.00 2.85
1958 2010 7.972301 AGTTTAGCAATAGGATTAGCATCTCT 58.028 34.615 0.00 0.00 0.00 3.10
1959 2011 7.875041 TGAGTTTAGCAATAGGATTAGCATCTC 59.125 37.037 0.00 0.00 0.00 2.75
1960 2012 7.659390 GTGAGTTTAGCAATAGGATTAGCATCT 59.341 37.037 0.00 0.00 0.00 2.90
1961 2013 7.659390 AGTGAGTTTAGCAATAGGATTAGCATC 59.341 37.037 0.00 0.00 0.00 3.91
1962 2014 7.512992 AGTGAGTTTAGCAATAGGATTAGCAT 58.487 34.615 0.00 0.00 0.00 3.79
1963 2015 6.889198 AGTGAGTTTAGCAATAGGATTAGCA 58.111 36.000 0.00 0.00 0.00 3.49
1964 2016 7.793927 AAGTGAGTTTAGCAATAGGATTAGC 57.206 36.000 0.00 0.00 0.00 3.09
1967 2019 9.740710 ACTTAAAGTGAGTTTAGCAATAGGATT 57.259 29.630 0.00 0.00 32.07 3.01
1968 2020 9.740710 AACTTAAAGTGAGTTTAGCAATAGGAT 57.259 29.630 0.00 0.00 33.76 3.24
2202 2414 5.627135 ACCATGCATTGTCATAGATGATCA 58.373 37.500 0.00 0.00 39.30 2.92
2250 2462 5.351948 TGTGCACATGCTTAACTAGGATA 57.648 39.130 17.42 0.00 42.66 2.59
2285 2497 5.148651 AGAGTAAGCAATACGTCCAGTTT 57.851 39.130 0.00 0.00 39.62 2.66
2654 2868 0.250467 GCCTCTGAAACCAGACAGCA 60.250 55.000 0.00 0.00 35.88 4.41
2663 2877 4.636206 CCACAATAACCTAGCCTCTGAAAC 59.364 45.833 0.00 0.00 0.00 2.78
2670 2884 4.736473 ACAAAACCACAATAACCTAGCCT 58.264 39.130 0.00 0.00 0.00 4.58
2719 2937 2.560542 ACAAAACACAGTTCAGCAACCA 59.439 40.909 0.00 0.00 32.22 3.67
2778 2997 5.766150 TTGTATGACCCACTTCACTTTTG 57.234 39.130 0.00 0.00 0.00 2.44
2838 3057 4.728772 TGGATTCTCACAATCCTGTTTGT 58.271 39.130 13.30 0.00 45.01 2.83
2857 3076 1.003003 TGTGTTCGGCATTGAGATGGA 59.997 47.619 0.00 0.00 33.72 3.41
2861 3080 1.202758 AGGTTGTGTTCGGCATTGAGA 60.203 47.619 0.00 0.00 0.00 3.27
2910 3129 8.628882 AAAACAACGAGAAAAACTGATAAAGG 57.371 30.769 0.00 0.00 0.00 3.11
2917 3136 4.265320 GCCTGAAAACAACGAGAAAAACTG 59.735 41.667 0.00 0.00 0.00 3.16
2979 3198 5.622914 GCATGCAGTTACAAGATGAAACCAT 60.623 40.000 14.21 0.00 0.00 3.55
3055 3284 3.831575 AACAGCAGTTGACCCTTGGGG 62.832 57.143 10.81 4.57 42.23 4.96
3083 3312 5.466127 AGAGGCCCCATATAAACTGAAAA 57.534 39.130 0.00 0.00 0.00 2.29
3164 3393 2.645802 ACCAACACAGTTTCGGCTTAA 58.354 42.857 0.00 0.00 0.00 1.85
3170 3399 4.616181 AGAAAGAACCAACACAGTTTCG 57.384 40.909 0.00 0.00 0.00 3.46
3221 3450 4.898861 AGTAAGATAGGGAGCTTCCAGAAG 59.101 45.833 15.31 2.93 38.64 2.85
3240 3469 2.955660 CAAGGAAAACCAGCCACAGTAA 59.044 45.455 0.00 0.00 0.00 2.24
3249 3478 6.593382 TGAAAACATTGTTCAAGGAAAACCAG 59.407 34.615 1.83 0.00 32.13 4.00
3281 3510 2.778299 TCAAATCAAGGAACCGGTCTG 58.222 47.619 8.04 3.34 0.00 3.51
3311 3540 1.195115 AATCTGGCGCAGGACTAAGA 58.805 50.000 10.83 0.10 31.51 2.10
3428 3657 8.339714 GCAAGGCGTACATAAATTAGTTAATCA 58.660 33.333 0.00 0.00 0.00 2.57
3429 3658 8.557029 AGCAAGGCGTACATAAATTAGTTAATC 58.443 33.333 0.00 0.00 0.00 1.75
3442 3695 1.271379 ACCTGAAAGCAAGGCGTACAT 60.271 47.619 0.00 0.00 0.00 2.29
3448 3701 2.024176 TCGATACCTGAAAGCAAGGC 57.976 50.000 0.00 0.00 0.00 4.35
3449 3702 5.335127 CATTTTCGATACCTGAAAGCAAGG 58.665 41.667 0.00 0.00 36.74 3.61
3481 3734 6.987992 TCAATCCGTTGTTTACTAGAACACTT 59.012 34.615 0.00 0.00 39.11 3.16
3569 3822 1.344953 TTGTCCTCTGGTGCAGGTGT 61.345 55.000 0.00 0.00 32.20 4.16
3593 3846 8.228035 TGCTGTTTTTACTTGTACAATAAGGT 57.772 30.769 9.13 6.12 0.00 3.50
3595 3848 9.382244 GTCTGCTGTTTTTACTTGTACAATAAG 57.618 33.333 9.13 0.00 0.00 1.73
3622 3876 0.901827 AAATCATGGGCGTTTTCCCC 59.098 50.000 0.00 0.00 45.97 4.81
3665 3919 6.891908 AGGGCAATCAACTACAAGAAATACAT 59.108 34.615 0.00 0.00 0.00 2.29
3696 3950 0.257039 ATCCCTGCTTTACTGCCCAG 59.743 55.000 0.00 0.00 0.00 4.45
3711 3965 2.027192 TGGTTTCAGCAGTAGTCATCCC 60.027 50.000 0.00 0.00 0.00 3.85
3783 4041 7.220741 TCGTCAATCAAATGGTTCCAAATTA 57.779 32.000 0.00 0.00 0.00 1.40
3812 4070 4.260743 GCAAAAGTTGGCCAAACAATCTTC 60.261 41.667 22.47 4.89 41.61 2.87
3851 4109 7.094805 GGAAGGCGATATATTCAAAATGTAGCA 60.095 37.037 0.00 0.00 0.00 3.49
3853 4111 8.553459 AGGAAGGCGATATATTCAAAATGTAG 57.447 34.615 0.00 0.00 0.00 2.74
3882 4141 3.359695 AACATTGGGCTAACCGTACAT 57.640 42.857 0.00 0.00 44.64 2.29
3899 4158 7.013846 CCCTCCAAGTACAGAAATGTTTAAACA 59.986 37.037 22.58 22.58 44.06 2.83
3909 4168 2.054799 AGCACCCTCCAAGTACAGAAA 58.945 47.619 0.00 0.00 0.00 2.52
3911 4170 1.347707 CAAGCACCCTCCAAGTACAGA 59.652 52.381 0.00 0.00 0.00 3.41
3914 4173 0.690762 TCCAAGCACCCTCCAAGTAC 59.309 55.000 0.00 0.00 0.00 2.73
3915 4174 1.559682 GATCCAAGCACCCTCCAAGTA 59.440 52.381 0.00 0.00 0.00 2.24
3916 4175 0.329596 GATCCAAGCACCCTCCAAGT 59.670 55.000 0.00 0.00 0.00 3.16
3918 4177 1.139498 TGGATCCAAGCACCCTCCAA 61.139 55.000 13.46 0.00 33.19 3.53
3919 4178 1.139498 TTGGATCCAAGCACCCTCCA 61.139 55.000 23.63 0.00 34.27 3.86
3920 4179 0.394899 CTTGGATCCAAGCACCCTCC 60.395 60.000 35.47 0.00 45.38 4.30
3921 4180 3.181526 CTTGGATCCAAGCACCCTC 57.818 57.895 35.47 0.00 45.38 4.30
3929 4188 6.502138 ACTAAAATGAATCCCTTGGATCCAA 58.498 36.000 25.53 25.53 42.27 3.53
3930 4189 6.068853 AGACTAAAATGAATCCCTTGGATCCA 60.069 38.462 11.44 11.44 42.27 3.41
3931 4190 6.264067 CAGACTAAAATGAATCCCTTGGATCC 59.736 42.308 4.20 4.20 42.27 3.36
3932 4191 7.012799 GTCAGACTAAAATGAATCCCTTGGATC 59.987 40.741 0.00 0.00 42.27 3.36
3933 4192 6.830838 GTCAGACTAAAATGAATCCCTTGGAT 59.169 38.462 0.00 0.00 45.46 3.41
3934 4193 6.012508 AGTCAGACTAAAATGAATCCCTTGGA 60.013 38.462 0.00 0.00 35.55 3.53
3935 4194 6.183347 AGTCAGACTAAAATGAATCCCTTGG 58.817 40.000 0.00 0.00 0.00 3.61
3936 4195 8.792830 TTAGTCAGACTAAAATGAATCCCTTG 57.207 34.615 19.07 0.00 37.71 3.61
3951 4210 9.921637 CTTGAAGAGACTATTTTTAGTCAGACT 57.078 33.333 8.50 8.50 46.62 3.24
3952 4211 9.915629 TCTTGAAGAGACTATTTTTAGTCAGAC 57.084 33.333 13.86 0.00 46.62 3.51
3955 4214 9.155975 GCATCTTGAAGAGACTATTTTTAGTCA 57.844 33.333 13.86 0.00 46.62 3.41
3956 4215 9.377312 AGCATCTTGAAGAGACTATTTTTAGTC 57.623 33.333 0.00 5.24 45.05 2.59
3961 4220 9.732130 ACTTTAGCATCTTGAAGAGACTATTTT 57.268 29.630 0.00 0.00 37.17 1.82
3962 4221 9.732130 AACTTTAGCATCTTGAAGAGACTATTT 57.268 29.630 0.00 0.00 37.17 1.40
3963 4222 9.377312 GAACTTTAGCATCTTGAAGAGACTATT 57.623 33.333 0.00 0.00 37.17 1.73
3964 4223 7.984617 GGAACTTTAGCATCTTGAAGAGACTAT 59.015 37.037 0.00 0.00 37.17 2.12
3965 4224 7.039011 TGGAACTTTAGCATCTTGAAGAGACTA 60.039 37.037 0.00 2.14 37.17 2.59
3966 4225 6.169800 GGAACTTTAGCATCTTGAAGAGACT 58.830 40.000 0.00 3.13 37.17 3.24
3967 4226 5.934625 TGGAACTTTAGCATCTTGAAGAGAC 59.065 40.000 0.00 0.00 37.17 3.36
3968 4227 6.114187 TGGAACTTTAGCATCTTGAAGAGA 57.886 37.500 0.00 0.00 39.13 3.10
3969 4228 6.622462 GCTTGGAACTTTAGCATCTTGAAGAG 60.622 42.308 0.00 0.00 35.05 2.85
3970 4229 5.182001 GCTTGGAACTTTAGCATCTTGAAGA 59.818 40.000 0.00 0.00 35.05 2.87
3971 4230 5.048504 TGCTTGGAACTTTAGCATCTTGAAG 60.049 40.000 0.00 0.00 39.79 3.02
3972 4231 4.826733 TGCTTGGAACTTTAGCATCTTGAA 59.173 37.500 0.00 0.00 39.79 2.69
3973 4232 4.216257 GTGCTTGGAACTTTAGCATCTTGA 59.784 41.667 0.00 0.00 45.61 3.02
3974 4233 4.479619 GTGCTTGGAACTTTAGCATCTTG 58.520 43.478 0.00 0.00 45.61 3.02
3975 4234 3.507622 GGTGCTTGGAACTTTAGCATCTT 59.492 43.478 0.00 0.00 45.61 2.40
3976 4235 3.084786 GGTGCTTGGAACTTTAGCATCT 58.915 45.455 0.00 0.00 45.61 2.90
3977 4236 2.164422 GGGTGCTTGGAACTTTAGCATC 59.836 50.000 0.00 0.00 45.61 3.91
3978 4237 2.171003 GGGTGCTTGGAACTTTAGCAT 58.829 47.619 0.00 0.00 45.61 3.79
3979 4238 1.616159 GGGTGCTTGGAACTTTAGCA 58.384 50.000 0.00 0.00 42.22 3.49
3980 4239 0.888619 GGGGTGCTTGGAACTTTAGC 59.111 55.000 0.00 0.00 35.50 3.09
3981 4240 2.162681 CAGGGGTGCTTGGAACTTTAG 58.837 52.381 0.00 0.00 0.00 1.85
3982 4241 1.777878 TCAGGGGTGCTTGGAACTTTA 59.222 47.619 0.00 0.00 0.00 1.85
3983 4242 0.555769 TCAGGGGTGCTTGGAACTTT 59.444 50.000 0.00 0.00 0.00 2.66
3984 4243 0.178990 GTCAGGGGTGCTTGGAACTT 60.179 55.000 0.00 0.00 0.00 2.66
3985 4244 1.062488 AGTCAGGGGTGCTTGGAACT 61.062 55.000 0.00 0.00 0.00 3.01
3986 4245 0.690762 TAGTCAGGGGTGCTTGGAAC 59.309 55.000 0.00 0.00 0.00 3.62
3987 4246 1.440618 TTAGTCAGGGGTGCTTGGAA 58.559 50.000 0.00 0.00 0.00 3.53
3988 4247 1.440618 TTTAGTCAGGGGTGCTTGGA 58.559 50.000 0.00 0.00 0.00 3.53
3989 4248 2.286365 TTTTAGTCAGGGGTGCTTGG 57.714 50.000 0.00 0.00 0.00 3.61
3990 4249 3.486383 TCTTTTTAGTCAGGGGTGCTTG 58.514 45.455 0.00 0.00 0.00 4.01
3991 4250 3.498661 CCTCTTTTTAGTCAGGGGTGCTT 60.499 47.826 0.00 0.00 0.00 3.91
3992 4251 2.040412 CCTCTTTTTAGTCAGGGGTGCT 59.960 50.000 0.00 0.00 0.00 4.40
3993 4252 2.437413 CCTCTTTTTAGTCAGGGGTGC 58.563 52.381 0.00 0.00 0.00 5.01
3994 4253 2.040412 AGCCTCTTTTTAGTCAGGGGTG 59.960 50.000 0.00 0.00 32.47 4.61
3995 4254 2.349445 AGCCTCTTTTTAGTCAGGGGT 58.651 47.619 0.00 0.00 32.47 4.95
3996 4255 4.569719 TTAGCCTCTTTTTAGTCAGGGG 57.430 45.455 0.00 0.00 33.13 4.79
3997 4256 6.004574 AGTTTTAGCCTCTTTTTAGTCAGGG 58.995 40.000 0.00 0.00 0.00 4.45
3998 4257 7.878644 ACTAGTTTTAGCCTCTTTTTAGTCAGG 59.121 37.037 0.00 0.00 0.00 3.86
3999 4258 8.834749 ACTAGTTTTAGCCTCTTTTTAGTCAG 57.165 34.615 0.00 0.00 0.00 3.51
4000 4259 8.648693 AGACTAGTTTTAGCCTCTTTTTAGTCA 58.351 33.333 0.00 0.00 37.83 3.41
4001 4260 9.491675 AAGACTAGTTTTAGCCTCTTTTTAGTC 57.508 33.333 0.00 0.00 36.42 2.59
4002 4261 9.274206 CAAGACTAGTTTTAGCCTCTTTTTAGT 57.726 33.333 0.00 0.00 0.00 2.24
4003 4262 9.490379 TCAAGACTAGTTTTAGCCTCTTTTTAG 57.510 33.333 0.00 0.00 0.00 1.85
4004 4263 9.490379 CTCAAGACTAGTTTTAGCCTCTTTTTA 57.510 33.333 0.00 0.00 0.00 1.52
4005 4264 8.211629 TCTCAAGACTAGTTTTAGCCTCTTTTT 58.788 33.333 0.00 0.00 0.00 1.94
4006 4265 7.658167 GTCTCAAGACTAGTTTTAGCCTCTTTT 59.342 37.037 0.00 0.00 41.65 2.27
4007 4266 7.156000 GTCTCAAGACTAGTTTTAGCCTCTTT 58.844 38.462 0.00 0.00 41.65 2.52
4008 4267 6.693466 GTCTCAAGACTAGTTTTAGCCTCTT 58.307 40.000 0.00 0.00 41.65 2.85
4009 4268 6.275494 GTCTCAAGACTAGTTTTAGCCTCT 57.725 41.667 0.00 0.00 41.65 3.69
4032 4291 8.101419 AGAGGTACCCTGACTAAAACATTTTAG 58.899 37.037 18.37 18.37 43.37 1.85
4033 4292 7.981142 AGAGGTACCCTGACTAAAACATTTTA 58.019 34.615 8.74 0.00 31.76 1.52
4034 4293 6.849151 AGAGGTACCCTGACTAAAACATTTT 58.151 36.000 8.74 0.00 31.76 1.82
4035 4294 6.449830 AGAGGTACCCTGACTAAAACATTT 57.550 37.500 8.74 0.00 31.76 2.32
4036 4295 6.729569 AGTAGAGGTACCCTGACTAAAACATT 59.270 38.462 8.74 0.00 31.76 2.71
4037 4296 6.262207 AGTAGAGGTACCCTGACTAAAACAT 58.738 40.000 8.74 0.00 31.76 2.71
4038 4297 5.648247 AGTAGAGGTACCCTGACTAAAACA 58.352 41.667 8.74 0.00 31.76 2.83
4039 4298 7.709149 TTAGTAGAGGTACCCTGACTAAAAC 57.291 40.000 20.06 7.82 36.52 2.43
4040 4299 8.725606 TTTTAGTAGAGGTACCCTGACTAAAA 57.274 34.615 29.70 29.70 44.92 1.52
4041 4300 8.755977 CATTTTAGTAGAGGTACCCTGACTAAA 58.244 37.037 24.98 24.98 41.63 1.85
4042 4301 7.897565 ACATTTTAGTAGAGGTACCCTGACTAA 59.102 37.037 19.09 19.09 37.11 2.24
4043 4302 7.341256 CACATTTTAGTAGAGGTACCCTGACTA 59.659 40.741 8.74 10.50 31.76 2.59
4044 4303 6.154706 CACATTTTAGTAGAGGTACCCTGACT 59.845 42.308 8.74 11.52 31.76 3.41
4045 4304 6.070938 ACACATTTTAGTAGAGGTACCCTGAC 60.071 42.308 8.74 3.82 31.76 3.51
4046 4305 6.021030 ACACATTTTAGTAGAGGTACCCTGA 58.979 40.000 8.74 0.00 31.76 3.86
4047 4306 6.295719 ACACATTTTAGTAGAGGTACCCTG 57.704 41.667 8.74 0.00 31.76 4.45
4048 4307 8.619683 AATACACATTTTAGTAGAGGTACCCT 57.380 34.615 8.74 8.20 36.03 4.34
4049 4308 9.978044 CTAATACACATTTTAGTAGAGGTACCC 57.022 37.037 8.74 0.00 0.00 3.69
4053 4312 9.490083 AGGACTAATACACATTTTAGTAGAGGT 57.510 33.333 0.00 0.00 38.45 3.85
4054 4313 9.968870 GAGGACTAATACACATTTTAGTAGAGG 57.031 37.037 0.00 0.00 38.45 3.69
4061 4320 9.444600 GGACAAAGAGGACTAATACACATTTTA 57.555 33.333 0.00 0.00 0.00 1.52
4062 4321 8.164070 AGGACAAAGAGGACTAATACACATTTT 58.836 33.333 0.00 0.00 0.00 1.82
4063 4322 7.690256 AGGACAAAGAGGACTAATACACATTT 58.310 34.615 0.00 0.00 0.00 2.32
4064 4323 7.259088 AGGACAAAGAGGACTAATACACATT 57.741 36.000 0.00 0.00 0.00 2.71
4065 4324 6.875972 AGGACAAAGAGGACTAATACACAT 57.124 37.500 0.00 0.00 0.00 3.21
4066 4325 6.681729 AAGGACAAAGAGGACTAATACACA 57.318 37.500 0.00 0.00 0.00 3.72
4067 4326 9.668497 AAATAAGGACAAAGAGGACTAATACAC 57.332 33.333 0.00 0.00 0.00 2.90
4072 4331 9.939802 GAGTTAAATAAGGACAAAGAGGACTAA 57.060 33.333 0.00 0.00 0.00 2.24
4073 4332 8.537858 GGAGTTAAATAAGGACAAAGAGGACTA 58.462 37.037 0.00 0.00 0.00 2.59
4074 4333 7.237887 AGGAGTTAAATAAGGACAAAGAGGACT 59.762 37.037 0.00 0.00 0.00 3.85
4075 4334 7.395617 AGGAGTTAAATAAGGACAAAGAGGAC 58.604 38.462 0.00 0.00 0.00 3.85
4076 4335 7.458170 AGAGGAGTTAAATAAGGACAAAGAGGA 59.542 37.037 0.00 0.00 0.00 3.71
4077 4336 7.625469 AGAGGAGTTAAATAAGGACAAAGAGG 58.375 38.462 0.00 0.00 0.00 3.69
4078 4337 7.766738 GGAGAGGAGTTAAATAAGGACAAAGAG 59.233 40.741 0.00 0.00 0.00 2.85
4079 4338 7.458170 AGGAGAGGAGTTAAATAAGGACAAAGA 59.542 37.037 0.00 0.00 0.00 2.52
4080 4339 7.625469 AGGAGAGGAGTTAAATAAGGACAAAG 58.375 38.462 0.00 0.00 0.00 2.77
4081 4340 7.569599 AGGAGAGGAGTTAAATAAGGACAAA 57.430 36.000 0.00 0.00 0.00 2.83
4082 4341 7.569599 AAGGAGAGGAGTTAAATAAGGACAA 57.430 36.000 0.00 0.00 0.00 3.18
4083 4342 7.236847 TCAAAGGAGAGGAGTTAAATAAGGACA 59.763 37.037 0.00 0.00 0.00 4.02
4084 4343 7.549842 GTCAAAGGAGAGGAGTTAAATAAGGAC 59.450 40.741 0.00 0.00 0.00 3.85
4085 4344 7.236847 TGTCAAAGGAGAGGAGTTAAATAAGGA 59.763 37.037 0.00 0.00 0.00 3.36
4086 4345 7.334671 GTGTCAAAGGAGAGGAGTTAAATAAGG 59.665 40.741 0.00 0.00 0.00 2.69
4087 4346 7.878127 TGTGTCAAAGGAGAGGAGTTAAATAAG 59.122 37.037 0.00 0.00 0.00 1.73
4088 4347 7.741785 TGTGTCAAAGGAGAGGAGTTAAATAA 58.258 34.615 0.00 0.00 0.00 1.40
4089 4348 7.311092 TGTGTCAAAGGAGAGGAGTTAAATA 57.689 36.000 0.00 0.00 0.00 1.40
4090 4349 6.187727 TGTGTCAAAGGAGAGGAGTTAAAT 57.812 37.500 0.00 0.00 0.00 1.40
4091 4350 5.623956 TGTGTCAAAGGAGAGGAGTTAAA 57.376 39.130 0.00 0.00 0.00 1.52
4092 4351 5.611374 CTTGTGTCAAAGGAGAGGAGTTAA 58.389 41.667 0.00 0.00 0.00 2.01
4093 4352 4.503296 GCTTGTGTCAAAGGAGAGGAGTTA 60.503 45.833 0.00 0.00 0.00 2.24
4094 4353 3.745797 GCTTGTGTCAAAGGAGAGGAGTT 60.746 47.826 0.00 0.00 0.00 3.01
4095 4354 2.224402 GCTTGTGTCAAAGGAGAGGAGT 60.224 50.000 0.00 0.00 0.00 3.85
4096 4355 2.421619 GCTTGTGTCAAAGGAGAGGAG 58.578 52.381 0.00 0.00 0.00 3.69
4097 4356 1.270305 CGCTTGTGTCAAAGGAGAGGA 60.270 52.381 0.00 0.00 0.00 3.71
4098 4357 1.151668 CGCTTGTGTCAAAGGAGAGG 58.848 55.000 0.00 0.00 0.00 3.69
4099 4358 2.064762 CTCGCTTGTGTCAAAGGAGAG 58.935 52.381 0.00 0.00 31.45 3.20
4100 4359 1.412710 ACTCGCTTGTGTCAAAGGAGA 59.587 47.619 12.82 1.44 32.88 3.71
4101 4360 1.871080 ACTCGCTTGTGTCAAAGGAG 58.129 50.000 0.00 0.00 33.87 3.69
4102 4361 2.325583 AACTCGCTTGTGTCAAAGGA 57.674 45.000 0.00 0.00 0.00 3.36
4103 4362 3.108144 CAAAACTCGCTTGTGTCAAAGG 58.892 45.455 0.00 0.00 0.00 3.11
4104 4363 3.108144 CCAAAACTCGCTTGTGTCAAAG 58.892 45.455 0.00 0.00 0.00 2.77
4105 4364 2.750166 TCCAAAACTCGCTTGTGTCAAA 59.250 40.909 0.00 0.00 0.00 2.69
4106 4365 2.360844 TCCAAAACTCGCTTGTGTCAA 58.639 42.857 0.00 0.00 0.00 3.18
4107 4366 2.031258 TCCAAAACTCGCTTGTGTCA 57.969 45.000 0.00 0.00 0.00 3.58
4108 4367 3.003275 TCAATCCAAAACTCGCTTGTGTC 59.997 43.478 0.00 0.00 0.00 3.67
4109 4368 2.948979 TCAATCCAAAACTCGCTTGTGT 59.051 40.909 0.00 0.00 0.00 3.72
4110 4369 3.624326 TCAATCCAAAACTCGCTTGTG 57.376 42.857 0.00 0.00 0.00 3.33
4111 4370 3.004734 CCTTCAATCCAAAACTCGCTTGT 59.995 43.478 0.00 0.00 0.00 3.16
4112 4371 3.568538 CCTTCAATCCAAAACTCGCTTG 58.431 45.455 0.00 0.00 0.00 4.01
4113 4372 2.558359 CCCTTCAATCCAAAACTCGCTT 59.442 45.455 0.00 0.00 0.00 4.68
4114 4373 2.162681 CCCTTCAATCCAAAACTCGCT 58.837 47.619 0.00 0.00 0.00 4.93
4115 4374 1.886542 ACCCTTCAATCCAAAACTCGC 59.113 47.619 0.00 0.00 0.00 5.03
4116 4375 4.584327 AAACCCTTCAATCCAAAACTCG 57.416 40.909 0.00 0.00 0.00 4.18
4117 4376 6.894339 TCTAAACCCTTCAATCCAAAACTC 57.106 37.500 0.00 0.00 0.00 3.01
4118 4377 7.066781 TCTTCTAAACCCTTCAATCCAAAACT 58.933 34.615 0.00 0.00 0.00 2.66
4119 4378 7.284919 TCTTCTAAACCCTTCAATCCAAAAC 57.715 36.000 0.00 0.00 0.00 2.43
4120 4379 9.594936 TTATCTTCTAAACCCTTCAATCCAAAA 57.405 29.630 0.00 0.00 0.00 2.44
4121 4380 9.768215 ATTATCTTCTAAACCCTTCAATCCAAA 57.232 29.630 0.00 0.00 0.00 3.28
4128 4387 9.920946 AGCATTTATTATCTTCTAAACCCTTCA 57.079 29.630 0.00 0.00 0.00 3.02
4130 4389 9.920946 TGAGCATTTATTATCTTCTAAACCCTT 57.079 29.630 0.00 0.00 0.00 3.95
4193 4452 3.355378 TGCTAACCTCATCCATGTTTGG 58.645 45.455 0.00 0.00 45.15 3.28
4194 4453 4.460382 ACTTGCTAACCTCATCCATGTTTG 59.540 41.667 0.00 0.00 0.00 2.93
4195 4454 4.666512 ACTTGCTAACCTCATCCATGTTT 58.333 39.130 0.00 0.00 0.00 2.83
4196 4455 4.307032 ACTTGCTAACCTCATCCATGTT 57.693 40.909 0.00 0.00 0.00 2.71
4197 4456 4.307032 AACTTGCTAACCTCATCCATGT 57.693 40.909 0.00 0.00 0.00 3.21
4198 4457 5.649782 AAAACTTGCTAACCTCATCCATG 57.350 39.130 0.00 0.00 0.00 3.66
4199 4458 6.485171 ACTAAAACTTGCTAACCTCATCCAT 58.515 36.000 0.00 0.00 0.00 3.41
4200 4459 5.876357 ACTAAAACTTGCTAACCTCATCCA 58.124 37.500 0.00 0.00 0.00 3.41
4201 4460 5.354513 GGACTAAAACTTGCTAACCTCATCC 59.645 44.000 0.00 0.00 0.00 3.51
4202 4461 5.354513 GGGACTAAAACTTGCTAACCTCATC 59.645 44.000 0.00 0.00 0.00 2.92
4203 4462 5.222048 TGGGACTAAAACTTGCTAACCTCAT 60.222 40.000 0.00 0.00 0.00 2.90
4204 4463 4.103469 TGGGACTAAAACTTGCTAACCTCA 59.897 41.667 0.00 0.00 0.00 3.86
4205 4464 4.454847 GTGGGACTAAAACTTGCTAACCTC 59.545 45.833 0.00 0.00 0.00 3.85
4206 4465 4.104261 AGTGGGACTAAAACTTGCTAACCT 59.896 41.667 0.00 0.00 0.00 3.50
4207 4466 4.395625 AGTGGGACTAAAACTTGCTAACC 58.604 43.478 0.00 0.00 0.00 2.85
4208 4467 6.228995 AGTAGTGGGACTAAAACTTGCTAAC 58.771 40.000 0.00 0.00 31.62 2.34
4209 4468 6.429521 AGTAGTGGGACTAAAACTTGCTAA 57.570 37.500 0.00 0.00 31.62 3.09
4210 4469 6.429521 AAGTAGTGGGACTAAAACTTGCTA 57.570 37.500 0.00 0.00 31.62 3.49
4211 4470 4.976540 AGTAGTGGGACTAAAACTTGCT 57.023 40.909 0.00 0.00 31.62 3.91
4212 4471 6.387041 AAAAGTAGTGGGACTAAAACTTGC 57.613 37.500 0.00 0.00 31.62 4.01
4213 4472 8.672823 ACTAAAAGTAGTGGGACTAAAACTTG 57.327 34.615 0.00 0.00 39.20 3.16
4215 4474 9.770097 GTAACTAAAAGTAGTGGGACTAAAACT 57.230 33.333 0.00 0.00 39.79 2.66
4216 4475 8.703336 CGTAACTAAAAGTAGTGGGACTAAAAC 58.297 37.037 0.00 0.00 39.79 2.43
4217 4476 7.872483 CCGTAACTAAAAGTAGTGGGACTAAAA 59.128 37.037 0.00 0.00 39.79 1.52
4218 4477 7.378181 CCGTAACTAAAAGTAGTGGGACTAAA 58.622 38.462 0.00 0.00 39.79 1.85
4219 4478 6.572314 GCCGTAACTAAAAGTAGTGGGACTAA 60.572 42.308 0.00 0.00 39.79 2.24
4220 4479 5.105756 GCCGTAACTAAAAGTAGTGGGACTA 60.106 44.000 0.00 0.00 39.79 2.59
4221 4480 4.322273 GCCGTAACTAAAAGTAGTGGGACT 60.322 45.833 0.00 0.00 39.79 3.85
4222 4481 3.928992 GCCGTAACTAAAAGTAGTGGGAC 59.071 47.826 0.00 0.00 39.79 4.46
4223 4482 3.577848 TGCCGTAACTAAAAGTAGTGGGA 59.422 43.478 0.00 0.00 39.79 4.37
4224 4483 3.929094 TGCCGTAACTAAAAGTAGTGGG 58.071 45.455 0.00 0.00 39.79 4.61
4225 4484 5.064325 GGATTGCCGTAACTAAAAGTAGTGG 59.936 44.000 0.00 0.00 39.79 4.00
4226 4485 6.103222 GGATTGCCGTAACTAAAAGTAGTG 57.897 41.667 0.00 0.00 39.79 2.74
4242 4501 1.818674 AGGTGATTCAAACGGATTGCC 59.181 47.619 0.00 0.00 38.98 4.52
4243 4502 3.575965 AAGGTGATTCAAACGGATTGC 57.424 42.857 0.00 0.00 38.98 3.56
4244 4503 4.870363 ACAAAGGTGATTCAAACGGATTG 58.130 39.130 0.00 0.00 40.58 2.67
4298 4557 2.762535 TCCAAACCGGAGCTAGAAAG 57.237 50.000 9.46 0.00 39.64 2.62
4315 4574 7.622893 AATTCAGTTTCAAGAGAGCTAATCC 57.377 36.000 0.00 0.00 0.00 3.01
4369 4628 0.598942 CATGACACACACCGACCGAA 60.599 55.000 0.00 0.00 0.00 4.30
4371 4630 2.027073 CCATGACACACACCGACCG 61.027 63.158 0.00 0.00 0.00 4.79
4372 4631 2.325082 GCCATGACACACACCGACC 61.325 63.158 0.00 0.00 0.00 4.79
4374 4633 2.356913 CGCCATGACACACACCGA 60.357 61.111 0.00 0.00 0.00 4.69
4375 4634 2.664851 ACGCCATGACACACACCG 60.665 61.111 0.00 0.00 0.00 4.94
4376 4635 0.884704 AAGACGCCATGACACACACC 60.885 55.000 0.00 0.00 0.00 4.16
4378 4637 0.392706 AGAAGACGCCATGACACACA 59.607 50.000 0.00 0.00 0.00 3.72
4379 4638 1.071605 GAGAAGACGCCATGACACAC 58.928 55.000 0.00 0.00 0.00 3.82
4380 4639 0.969149 AGAGAAGACGCCATGACACA 59.031 50.000 0.00 0.00 0.00 3.72
4381 4640 1.354040 CAGAGAAGACGCCATGACAC 58.646 55.000 0.00 0.00 0.00 3.67
4382 4641 0.390340 GCAGAGAAGACGCCATGACA 60.390 55.000 0.00 0.00 0.00 3.58
4383 4642 1.086634 GGCAGAGAAGACGCCATGAC 61.087 60.000 0.00 0.00 45.52 3.06
4384 4643 1.219124 GGCAGAGAAGACGCCATGA 59.781 57.895 0.00 0.00 45.52 3.07
4385 4644 3.805267 GGCAGAGAAGACGCCATG 58.195 61.111 0.00 0.00 45.52 3.66
4388 4647 2.435059 GGTGGCAGAGAAGACGCC 60.435 66.667 0.00 0.00 46.43 5.68
4389 4648 2.811317 CGGTGGCAGAGAAGACGC 60.811 66.667 0.00 0.00 0.00 5.19
4390 4649 2.811317 GCGGTGGCAGAGAAGACG 60.811 66.667 0.00 0.00 39.62 4.18
4391 4650 1.446966 GAGCGGTGGCAGAGAAGAC 60.447 63.158 0.00 0.00 43.41 3.01
4392 4651 1.607756 AGAGCGGTGGCAGAGAAGA 60.608 57.895 0.00 0.00 43.41 2.87
4393 4652 1.447489 CAGAGCGGTGGCAGAGAAG 60.447 63.158 0.00 0.00 43.41 2.85
4394 4653 1.908299 TCAGAGCGGTGGCAGAGAA 60.908 57.895 0.00 0.00 43.41 2.87
4395 4654 2.283173 TCAGAGCGGTGGCAGAGA 60.283 61.111 0.00 0.00 43.41 3.10
4396 4655 2.125753 GTCAGAGCGGTGGCAGAG 60.126 66.667 0.00 0.00 43.41 3.35
4397 4656 3.695606 GGTCAGAGCGGTGGCAGA 61.696 66.667 0.00 0.00 43.41 4.26
4412 4671 3.557695 AAGGTAGACCCCAGCCGGT 62.558 63.158 1.90 0.00 39.49 5.28
4413 4672 1.848886 AAAAGGTAGACCCCAGCCGG 61.849 60.000 0.00 0.00 36.42 6.13
4414 4673 0.037734 AAAAAGGTAGACCCCAGCCG 59.962 55.000 0.00 0.00 36.42 5.52
4441 4700 1.228459 GGTGGACCCGAGCCTTTTT 60.228 57.895 0.00 0.00 0.00 1.94
4442 4701 2.125766 GAGGTGGACCCGAGCCTTTT 62.126 60.000 0.00 0.00 38.74 2.27
4443 4702 2.529389 AGGTGGACCCGAGCCTTT 60.529 61.111 0.00 0.00 38.74 3.11
4444 4703 3.003763 GAGGTGGACCCGAGCCTT 61.004 66.667 0.00 0.00 38.74 4.35
4451 4710 0.326238 TATCACTGGGAGGTGGACCC 60.326 60.000 0.00 0.00 46.87 4.46
4452 4711 1.123928 CTATCACTGGGAGGTGGACC 58.876 60.000 0.00 0.00 37.75 4.46
4453 4712 2.160721 TCTATCACTGGGAGGTGGAC 57.839 55.000 0.00 0.00 37.75 4.02
4454 4713 2.626950 CCTTCTATCACTGGGAGGTGGA 60.627 54.545 0.00 0.00 37.75 4.02
4455 4714 1.765314 CCTTCTATCACTGGGAGGTGG 59.235 57.143 0.00 0.00 37.75 4.61
4456 4715 2.472029 ACCTTCTATCACTGGGAGGTG 58.528 52.381 0.00 0.00 38.44 4.00
4457 4716 2.950990 ACCTTCTATCACTGGGAGGT 57.049 50.000 0.00 0.00 0.00 3.85
4458 4717 3.235200 CCTACCTTCTATCACTGGGAGG 58.765 54.545 0.00 0.00 43.53 4.30
4459 4718 3.235200 CCCTACCTTCTATCACTGGGAG 58.765 54.545 0.00 0.00 35.64 4.30
4460 4719 2.693074 GCCCTACCTTCTATCACTGGGA 60.693 54.545 0.00 0.00 35.64 4.37
4461 4720 1.694696 GCCCTACCTTCTATCACTGGG 59.305 57.143 0.00 0.00 36.63 4.45
4462 4721 2.398588 TGCCCTACCTTCTATCACTGG 58.601 52.381 0.00 0.00 0.00 4.00
4463 4722 4.696479 ATTGCCCTACCTTCTATCACTG 57.304 45.455 0.00 0.00 0.00 3.66
4464 4723 5.430089 AGAAATTGCCCTACCTTCTATCACT 59.570 40.000 0.00 0.00 0.00 3.41
4465 4724 5.685728 AGAAATTGCCCTACCTTCTATCAC 58.314 41.667 0.00 0.00 0.00 3.06
4466 4725 5.975988 AGAAATTGCCCTACCTTCTATCA 57.024 39.130 0.00 0.00 0.00 2.15
4467 4726 7.646548 AAAAGAAATTGCCCTACCTTCTATC 57.353 36.000 0.00 0.00 0.00 2.08
4493 4752 4.141981 TGCCCTACGTATATCCACGAAAAA 60.142 41.667 5.07 0.00 44.69 1.94
4494 4753 3.384146 TGCCCTACGTATATCCACGAAAA 59.616 43.478 5.07 0.00 44.69 2.29
4495 4754 2.957680 TGCCCTACGTATATCCACGAAA 59.042 45.455 5.07 0.00 44.69 3.46
4496 4755 2.585330 TGCCCTACGTATATCCACGAA 58.415 47.619 5.07 0.00 44.69 3.85
4497 4756 2.275134 TGCCCTACGTATATCCACGA 57.725 50.000 5.07 0.00 44.69 4.35
4499 4758 4.890088 TCATTTGCCCTACGTATATCCAC 58.110 43.478 0.00 0.00 0.00 4.02
4500 4759 5.623596 CGATCATTTGCCCTACGTATATCCA 60.624 44.000 0.00 0.00 0.00 3.41
4501 4760 4.804139 CGATCATTTGCCCTACGTATATCC 59.196 45.833 0.00 0.00 0.00 2.59
4502 4761 5.647589 TCGATCATTTGCCCTACGTATATC 58.352 41.667 0.00 0.00 0.00 1.63
4503 4762 5.651530 CTCGATCATTTGCCCTACGTATAT 58.348 41.667 0.00 0.00 0.00 0.86
4504 4763 4.617530 GCTCGATCATTTGCCCTACGTATA 60.618 45.833 0.00 0.00 0.00 1.47
4505 4764 3.861131 GCTCGATCATTTGCCCTACGTAT 60.861 47.826 0.00 0.00 0.00 3.06
4506 4765 2.545113 GCTCGATCATTTGCCCTACGTA 60.545 50.000 0.00 0.00 0.00 3.57
4507 4766 1.806623 GCTCGATCATTTGCCCTACGT 60.807 52.381 0.00 0.00 0.00 3.57
4508 4767 0.861837 GCTCGATCATTTGCCCTACG 59.138 55.000 0.00 0.00 0.00 3.51
4509 4768 1.869767 CTGCTCGATCATTTGCCCTAC 59.130 52.381 0.00 0.00 0.00 3.18
4510 4769 1.202687 CCTGCTCGATCATTTGCCCTA 60.203 52.381 0.00 0.00 0.00 3.53
4511 4770 0.465097 CCTGCTCGATCATTTGCCCT 60.465 55.000 0.00 0.00 0.00 5.19
4512 4771 0.749454 ACCTGCTCGATCATTTGCCC 60.749 55.000 0.00 0.00 0.00 5.36
4513 4772 0.659957 GACCTGCTCGATCATTTGCC 59.340 55.000 0.00 0.00 0.00 4.52
4514 4773 1.596727 GAGACCTGCTCGATCATTTGC 59.403 52.381 0.00 0.00 33.17 3.68
4524 4783 1.066143 TCATTTTCCCGAGACCTGCTC 60.066 52.381 0.00 0.00 40.38 4.26
4525 4784 0.984230 TCATTTTCCCGAGACCTGCT 59.016 50.000 0.00 0.00 0.00 4.24
4526 4785 1.821216 TTCATTTTCCCGAGACCTGC 58.179 50.000 0.00 0.00 0.00 4.85
4527 4786 3.129287 CCATTTCATTTTCCCGAGACCTG 59.871 47.826 0.00 0.00 0.00 4.00
4528 4787 3.356290 CCATTTCATTTTCCCGAGACCT 58.644 45.455 0.00 0.00 0.00 3.85
4529 4788 2.427095 CCCATTTCATTTTCCCGAGACC 59.573 50.000 0.00 0.00 0.00 3.85
4530 4789 2.159240 GCCCATTTCATTTTCCCGAGAC 60.159 50.000 0.00 0.00 0.00 3.36
4531 4790 2.099405 GCCCATTTCATTTTCCCGAGA 58.901 47.619 0.00 0.00 0.00 4.04
4532 4791 1.136891 GGCCCATTTCATTTTCCCGAG 59.863 52.381 0.00 0.00 0.00 4.63
4533 4792 1.190643 GGCCCATTTCATTTTCCCGA 58.809 50.000 0.00 0.00 0.00 5.14
4534 4793 0.901124 TGGCCCATTTCATTTTCCCG 59.099 50.000 0.00 0.00 0.00 5.14
4535 4794 1.407299 GCTGGCCCATTTCATTTTCCC 60.407 52.381 0.00 0.00 0.00 3.97
4536 4795 1.556451 AGCTGGCCCATTTCATTTTCC 59.444 47.619 0.00 0.00 0.00 3.13
4537 4796 3.181472 CCTAGCTGGCCCATTTCATTTTC 60.181 47.826 0.00 0.00 0.00 2.29
4538 4797 2.767960 CCTAGCTGGCCCATTTCATTTT 59.232 45.455 0.00 0.00 0.00 1.82
4539 4798 2.391678 CCTAGCTGGCCCATTTCATTT 58.608 47.619 0.00 0.00 0.00 2.32
4540 4799 2.077687 CCTAGCTGGCCCATTTCATT 57.922 50.000 0.00 0.00 0.00 2.57
4541 4800 3.835810 CCTAGCTGGCCCATTTCAT 57.164 52.632 0.00 0.00 0.00 2.57
4554 4813 2.974717 GATAGGGAGCGGCCTAGC 59.025 66.667 0.00 0.00 36.66 3.42
4555 4814 2.995872 GCGATAGGGAGCGGCCTAG 61.996 68.421 0.00 0.00 34.24 3.02
4556 4815 2.989824 GCGATAGGGAGCGGCCTA 60.990 66.667 0.00 0.00 34.24 3.93
4557 4816 4.924187 AGCGATAGGGAGCGGCCT 62.924 66.667 0.00 0.00 38.61 5.19
4558 4817 3.930012 AAGCGATAGGGAGCGGCC 61.930 66.667 0.00 0.00 38.61 6.13
4559 4818 2.663188 CAAGCGATAGGGAGCGGC 60.663 66.667 0.00 0.00 38.61 6.53
4560 4819 2.029666 CCAAGCGATAGGGAGCGG 59.970 66.667 0.00 0.00 38.61 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.