Multiple sequence alignment - TraesCS4A01G246500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G246500 chr4A 100.000 4880 0 0 1 4880 557244005 557248884 0.000000e+00 9012
1 TraesCS4A01G246500 chr4A 88.409 509 54 4 3 507 648411615 648412122 4.180000e-170 608
2 TraesCS4A01G246500 chr4A 85.462 509 67 7 6 507 530182556 530183064 1.560000e-144 523
3 TraesCS4A01G246500 chr4D 94.481 2120 81 8 673 2764 42579944 42577833 0.000000e+00 3234
4 TraesCS4A01G246500 chr4D 91.854 1780 81 30 2758 4521 42577741 42576010 0.000000e+00 2425
5 TraesCS4A01G246500 chr4D 89.883 514 46 6 1 510 104695613 104695102 0.000000e+00 656
6 TraesCS4A01G246500 chr4B 93.296 1790 84 17 673 2450 60701906 60700141 0.000000e+00 2608
7 TraesCS4A01G246500 chr4B 90.044 683 39 9 3555 4236 60699007 60698353 0.000000e+00 857
8 TraesCS4A01G246500 chr4B 88.086 512 56 5 1 508 413168143 413168653 1.940000e-168 603
9 TraesCS4A01G246500 chr4B 81.633 343 37 13 4387 4707 60697582 60697244 1.350000e-65 261
10 TraesCS4A01G246500 chr7A 88.386 508 51 7 6 507 540961298 540961803 5.400000e-169 604
11 TraesCS4A01G246500 chr7A 85.462 509 66 6 6 507 694369891 694370398 1.560000e-144 523
12 TraesCS4A01G246500 chr2A 87.033 509 62 4 1 507 759219672 759220178 5.480000e-159 571
13 TraesCS4A01G246500 chr2A 88.587 184 17 4 4700 4880 702196464 702196282 2.290000e-53 220
14 TraesCS4A01G246500 chr5A 85.658 509 65 6 6 507 591866501 591867008 3.350000e-146 529
15 TraesCS4A01G246500 chr5A 85.433 508 67 7 6 507 601496170 601496676 5.600000e-144 521
16 TraesCS4A01G246500 chr5A 90.164 183 15 3 4700 4880 478021312 478021493 8.170000e-58 235
17 TraesCS4A01G246500 chr1D 91.257 183 12 4 4700 4880 391223837 391224017 3.770000e-61 246
18 TraesCS4A01G246500 chr3D 90.000 180 14 4 4703 4880 23242101 23241924 3.800000e-56 230
19 TraesCS4A01G246500 chr3D 89.617 183 16 3 4700 4880 574440657 574440838 3.800000e-56 230
20 TraesCS4A01G246500 chr3D 88.889 180 17 3 4703 4880 105196400 105196222 8.220000e-53 219
21 TraesCS4A01G246500 chr6D 89.130 184 15 5 4700 4880 161098443 161098262 1.770000e-54 224
22 TraesCS4A01G246500 chr6A 89.011 182 17 3 4700 4879 22101540 22101720 6.360000e-54 222
23 TraesCS4A01G246500 chr2D 88.462 182 18 3 4701 4880 627325206 627325386 2.960000e-52 217


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G246500 chr4A 557244005 557248884 4879 False 9012.0 9012 100.000000 1 4880 1 chr4A.!!$F2 4879
1 TraesCS4A01G246500 chr4A 648411615 648412122 507 False 608.0 608 88.409000 3 507 1 chr4A.!!$F3 504
2 TraesCS4A01G246500 chr4A 530182556 530183064 508 False 523.0 523 85.462000 6 507 1 chr4A.!!$F1 501
3 TraesCS4A01G246500 chr4D 42576010 42579944 3934 True 2829.5 3234 93.167500 673 4521 2 chr4D.!!$R2 3848
4 TraesCS4A01G246500 chr4D 104695102 104695613 511 True 656.0 656 89.883000 1 510 1 chr4D.!!$R1 509
5 TraesCS4A01G246500 chr4B 60697244 60701906 4662 True 1242.0 2608 88.324333 673 4707 3 chr4B.!!$R1 4034
6 TraesCS4A01G246500 chr4B 413168143 413168653 510 False 603.0 603 88.086000 1 508 1 chr4B.!!$F1 507
7 TraesCS4A01G246500 chr7A 540961298 540961803 505 False 604.0 604 88.386000 6 507 1 chr7A.!!$F1 501
8 TraesCS4A01G246500 chr7A 694369891 694370398 507 False 523.0 523 85.462000 6 507 1 chr7A.!!$F2 501
9 TraesCS4A01G246500 chr2A 759219672 759220178 506 False 571.0 571 87.033000 1 507 1 chr2A.!!$F1 506
10 TraesCS4A01G246500 chr5A 591866501 591867008 507 False 529.0 529 85.658000 6 507 1 chr5A.!!$F2 501
11 TraesCS4A01G246500 chr5A 601496170 601496676 506 False 521.0 521 85.433000 6 507 1 chr5A.!!$F3 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
659 671 0.108774 CCCCCGAATTTCCCTAGAGC 59.891 60.000 0.00 0.0 0.00 4.09 F
660 672 0.837272 CCCCGAATTTCCCTAGAGCA 59.163 55.000 0.00 0.0 0.00 4.26 F
671 683 1.134551 CCCTAGAGCAAGAGAAGCCAC 60.135 57.143 0.00 0.0 0.00 5.01 F
1386 1403 1.313812 GCGATCCGATCTACCCCGAT 61.314 60.000 6.81 0.0 0.00 4.18 F
2693 2748 1.278537 ATGCCAATTGTCCAAAGGGG 58.721 50.000 4.43 0.0 38.37 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2639 2690 2.173356 CCTTGGATATGGAGCCAGTGAA 59.827 50.000 0.00 0.00 43.55 3.18 R
2673 2728 1.629861 CCCCTTTGGACAATTGGCATT 59.370 47.619 14.60 0.00 35.39 3.56 R
2693 2748 5.938322 TGATCGCTTTTGGATAAACTGTTC 58.062 37.500 0.00 0.00 0.00 3.18 R
3079 3552 2.034879 GTGGACTGACCGTGCATGG 61.035 63.158 23.83 23.83 45.98 3.66 R
4279 5495 0.176680 GGAGCATTCGAGCTTGGAGA 59.823 55.000 0.00 0.00 46.75 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.052468 AGCTGTATGGGCTCATCATGA 58.948 47.619 0.00 0.00 34.70 3.07
52 53 4.226384 TGTATGGGCTCATCATGACTAGT 58.774 43.478 0.00 0.00 34.96 2.57
88 89 3.044059 GCTAGCTTGGCTTGGCGTG 62.044 63.158 7.70 0.00 40.44 5.34
132 133 3.259876 TGGACTACACGGAACAAAGCTAT 59.740 43.478 0.00 0.00 0.00 2.97
151 152 7.579761 AGCTATCATTGAGGGAATTTTCTTC 57.420 36.000 0.00 0.00 0.00 2.87
154 155 7.067981 GCTATCATTGAGGGAATTTTCTTCAGT 59.932 37.037 0.00 0.00 0.00 3.41
164 165 3.973206 TTTTCTTCAGTCATCCGGCTA 57.027 42.857 0.00 0.00 0.00 3.93
185 186 6.910433 GGCTAATGTTGTGTATAAATTGGTCG 59.090 38.462 0.00 0.00 0.00 4.79
225 226 2.432628 GTTGACGAGACAGCGGGG 60.433 66.667 0.00 0.00 35.12 5.73
277 278 0.823356 GGAAGGCCAAGTGTGCTGAA 60.823 55.000 5.01 0.00 0.00 3.02
281 282 0.746659 GGCCAAGTGTGCTGAACTTT 59.253 50.000 0.00 0.00 35.70 2.66
398 405 1.745827 GCGTTGCTATTTGGGCCTCTA 60.746 52.381 4.53 0.00 0.00 2.43
444 455 6.727824 GCTTTTGCTTGACTATGTTCTCTA 57.272 37.500 0.00 0.00 43.35 2.43
525 537 6.959671 AAAAATTTGAAAAGTGCAAGTCGA 57.040 29.167 0.00 0.00 0.00 4.20
526 538 6.959671 AAAATTTGAAAAGTGCAAGTCGAA 57.040 29.167 0.00 0.00 0.00 3.71
527 539 7.538303 AAAATTTGAAAAGTGCAAGTCGAAT 57.462 28.000 0.00 0.00 0.00 3.34
528 540 7.538303 AAATTTGAAAAGTGCAAGTCGAATT 57.462 28.000 0.00 0.00 36.21 2.17
529 541 8.641499 AAATTTGAAAAGTGCAAGTCGAATTA 57.359 26.923 0.00 0.00 34.46 1.40
530 542 7.858052 ATTTGAAAAGTGCAAGTCGAATTAG 57.142 32.000 0.00 0.00 0.00 1.73
531 543 5.356882 TGAAAAGTGCAAGTCGAATTAGG 57.643 39.130 0.00 0.00 0.00 2.69
532 544 5.060506 TGAAAAGTGCAAGTCGAATTAGGA 58.939 37.500 0.00 0.00 0.00 2.94
533 545 5.179368 TGAAAAGTGCAAGTCGAATTAGGAG 59.821 40.000 0.00 0.00 0.00 3.69
534 546 2.622436 AGTGCAAGTCGAATTAGGAGC 58.378 47.619 0.00 0.00 0.00 4.70
535 547 2.234908 AGTGCAAGTCGAATTAGGAGCT 59.765 45.455 0.00 0.00 0.00 4.09
536 548 2.605366 GTGCAAGTCGAATTAGGAGCTC 59.395 50.000 4.71 4.71 0.00 4.09
537 549 2.233676 TGCAAGTCGAATTAGGAGCTCA 59.766 45.455 17.19 0.00 0.00 4.26
538 550 3.262420 GCAAGTCGAATTAGGAGCTCAA 58.738 45.455 17.19 1.99 0.00 3.02
539 551 3.684788 GCAAGTCGAATTAGGAGCTCAAA 59.315 43.478 17.19 9.65 0.00 2.69
540 552 4.333926 GCAAGTCGAATTAGGAGCTCAAAT 59.666 41.667 17.19 11.63 0.00 2.32
541 553 5.163713 GCAAGTCGAATTAGGAGCTCAAATT 60.164 40.000 20.27 20.27 0.00 1.82
542 554 6.253746 CAAGTCGAATTAGGAGCTCAAATTG 58.746 40.000 23.45 17.08 0.00 2.32
543 555 5.491982 AGTCGAATTAGGAGCTCAAATTGT 58.508 37.500 23.45 7.64 0.00 2.71
544 556 5.940470 AGTCGAATTAGGAGCTCAAATTGTT 59.060 36.000 23.45 8.86 0.00 2.83
545 557 6.431234 AGTCGAATTAGGAGCTCAAATTGTTT 59.569 34.615 23.45 7.40 0.00 2.83
546 558 6.524586 GTCGAATTAGGAGCTCAAATTGTTTG 59.475 38.462 23.45 13.81 41.96 2.93
547 559 6.429692 TCGAATTAGGAGCTCAAATTGTTTGA 59.570 34.615 23.45 15.22 46.68 2.69
566 578 9.676195 TTGTTTGATGTTGTACTAACATTGATG 57.324 29.630 18.45 0.00 40.62 3.07
567 579 8.845227 TGTTTGATGTTGTACTAACATTGATGT 58.155 29.630 18.45 0.00 40.62 3.06
568 580 9.117145 GTTTGATGTTGTACTAACATTGATGTG 57.883 33.333 18.45 0.00 40.62 3.21
569 581 7.977789 TGATGTTGTACTAACATTGATGTGT 57.022 32.000 18.45 0.00 40.62 3.72
570 582 7.805700 TGATGTTGTACTAACATTGATGTGTG 58.194 34.615 18.45 0.00 40.62 3.82
571 583 7.443879 TGATGTTGTACTAACATTGATGTGTGT 59.556 33.333 18.45 3.08 40.62 3.72
572 584 7.184800 TGTTGTACTAACATTGATGTGTGTC 57.815 36.000 0.00 0.00 41.61 3.67
573 585 6.989759 TGTTGTACTAACATTGATGTGTGTCT 59.010 34.615 0.00 0.00 41.61 3.41
574 586 8.145122 TGTTGTACTAACATTGATGTGTGTCTA 58.855 33.333 0.00 0.00 41.61 2.59
575 587 8.433126 GTTGTACTAACATTGATGTGTGTCTAC 58.567 37.037 0.00 0.00 41.61 2.59
576 588 7.662897 TGTACTAACATTGATGTGTGTCTACA 58.337 34.615 0.00 0.90 41.61 2.74
577 589 8.145122 TGTACTAACATTGATGTGTGTCTACAA 58.855 33.333 0.00 0.00 41.61 2.41
578 590 9.151471 GTACTAACATTGATGTGTGTCTACAAT 57.849 33.333 0.00 0.00 41.61 2.71
579 591 8.621532 ACTAACATTGATGTGTGTCTACAATT 57.378 30.769 0.00 0.00 41.61 2.32
580 592 9.066892 ACTAACATTGATGTGTGTCTACAATTT 57.933 29.630 0.00 0.00 41.61 1.82
581 593 9.897744 CTAACATTGATGTGTGTCTACAATTTT 57.102 29.630 0.00 0.00 41.61 1.82
629 641 7.024340 TGATTTCATTGATCTCAGCTAAAGC 57.976 36.000 0.00 0.00 42.49 3.51
641 653 1.669604 GCTAAAGCTAGACCTTGCCC 58.330 55.000 0.00 0.00 38.21 5.36
642 654 1.747552 GCTAAAGCTAGACCTTGCCCC 60.748 57.143 0.00 0.00 38.21 5.80
643 655 0.916809 TAAAGCTAGACCTTGCCCCC 59.083 55.000 0.00 0.00 31.78 5.40
659 671 0.108774 CCCCCGAATTTCCCTAGAGC 59.891 60.000 0.00 0.00 0.00 4.09
660 672 0.837272 CCCCGAATTTCCCTAGAGCA 59.163 55.000 0.00 0.00 0.00 4.26
661 673 1.211949 CCCCGAATTTCCCTAGAGCAA 59.788 52.381 0.00 0.00 0.00 3.91
662 674 2.565841 CCCGAATTTCCCTAGAGCAAG 58.434 52.381 0.00 0.00 0.00 4.01
663 675 2.170607 CCCGAATTTCCCTAGAGCAAGA 59.829 50.000 0.00 0.00 0.00 3.02
664 676 3.462021 CCGAATTTCCCTAGAGCAAGAG 58.538 50.000 0.00 0.00 0.00 2.85
665 677 3.133003 CCGAATTTCCCTAGAGCAAGAGA 59.867 47.826 0.00 0.00 0.00 3.10
666 678 4.383118 CCGAATTTCCCTAGAGCAAGAGAA 60.383 45.833 0.00 0.00 0.00 2.87
667 679 4.808364 CGAATTTCCCTAGAGCAAGAGAAG 59.192 45.833 0.00 0.00 0.00 2.85
668 680 3.618690 TTTCCCTAGAGCAAGAGAAGC 57.381 47.619 0.00 0.00 0.00 3.86
669 681 1.490574 TCCCTAGAGCAAGAGAAGCC 58.509 55.000 0.00 0.00 0.00 4.35
670 682 1.198713 CCCTAGAGCAAGAGAAGCCA 58.801 55.000 0.00 0.00 0.00 4.75
671 683 1.134551 CCCTAGAGCAAGAGAAGCCAC 60.135 57.143 0.00 0.00 0.00 5.01
701 714 2.908015 GCCGGTGATCCTGGCTTA 59.092 61.111 20.72 0.00 44.14 3.09
702 715 1.451936 GCCGGTGATCCTGGCTTAT 59.548 57.895 20.72 0.00 44.14 1.73
846 859 3.365291 TTGTCGCCTCCCGGAATCG 62.365 63.158 0.73 0.33 37.59 3.34
1103 1120 3.680786 CCACGACGTGCTCCTCCA 61.681 66.667 22.46 0.00 31.34 3.86
1386 1403 1.313812 GCGATCCGATCTACCCCGAT 61.314 60.000 6.81 0.00 0.00 4.18
1698 1715 3.075641 GTGACGGAGGGGAGGGAC 61.076 72.222 0.00 0.00 0.00 4.46
1963 1980 6.698329 TCAGTGCTCAATTTTTCTGTTCATTG 59.302 34.615 0.00 0.00 0.00 2.82
2122 2153 2.183478 AACATGTGTGATTGGAGCGA 57.817 45.000 0.00 0.00 0.00 4.93
2123 2154 2.408271 ACATGTGTGATTGGAGCGAT 57.592 45.000 0.00 0.00 0.00 4.58
2124 2155 3.541996 ACATGTGTGATTGGAGCGATA 57.458 42.857 0.00 0.00 0.00 2.92
2138 2169 4.456280 GAGCGATATGGTCATCATGGTA 57.544 45.455 0.00 0.00 44.60 3.25
2139 2170 5.016051 GAGCGATATGGTCATCATGGTAT 57.984 43.478 0.00 0.00 44.60 2.73
2140 2171 6.149129 GAGCGATATGGTCATCATGGTATA 57.851 41.667 0.00 0.00 44.60 1.47
2141 2172 6.544928 AGCGATATGGTCATCATGGTATAA 57.455 37.500 0.00 0.00 37.30 0.98
2180 2215 6.475504 TCCTGTGATGCTAGAGAAATTTTCA 58.524 36.000 11.53 0.00 0.00 2.69
2336 2375 6.365970 ACCATTCAACTCTTGTGATCTACT 57.634 37.500 0.00 0.00 0.00 2.57
2344 2395 6.723298 ACTCTTGTGATCTACTCCCTATTG 57.277 41.667 0.00 0.00 0.00 1.90
2370 2421 9.332502 GGTTACATTTGGATTTTAACACCTTTT 57.667 29.630 0.00 0.00 0.00 2.27
2386 2437 4.082026 CACCTTTTCCCTCATTGAATGACC 60.082 45.833 3.29 0.00 35.06 4.02
2450 2501 8.415950 TTTTCTTGAGCCTGTTTATCCAAATA 57.584 30.769 0.00 0.00 0.00 1.40
2451 2502 8.593945 TTTCTTGAGCCTGTTTATCCAAATAT 57.406 30.769 0.00 0.00 0.00 1.28
2496 2547 4.071423 TGCGCATTAGCATTACATATGGT 58.929 39.130 5.66 0.00 42.92 3.55
2505 2556 3.819368 CATTACATATGGTGTGGCTCCA 58.181 45.455 7.80 0.00 42.24 3.86
2510 2561 3.289836 CATATGGTGTGGCTCCATTTCA 58.710 45.455 12.73 0.00 42.24 2.69
2513 2564 2.392662 TGGTGTGGCTCCATTTCAAAA 58.607 42.857 0.00 0.00 0.00 2.44
2559 2610 3.815401 GTGGTCAGCTCTGTGTAAACATT 59.185 43.478 0.00 0.00 0.00 2.71
2593 2644 2.547211 CAGAAGATAATGCCAGGAAGCG 59.453 50.000 0.00 0.00 34.65 4.68
2639 2690 2.499289 CTCAGCCATGGAGTTCTACAGT 59.501 50.000 18.40 0.00 0.00 3.55
2693 2748 1.278537 ATGCCAATTGTCCAAAGGGG 58.721 50.000 4.43 0.00 38.37 4.79
2712 2768 3.366985 GGGGAACAGTTTATCCAAAAGCG 60.367 47.826 0.00 0.00 37.46 4.68
2751 2807 9.851686 TTATTAGGTTTTCAGATGATAGCATGT 57.148 29.630 0.00 0.00 34.11 3.21
2944 3103 9.893305 GAATTATTAGGGAATGAATTGGTTACG 57.107 33.333 0.00 0.00 0.00 3.18
2954 3113 7.255346 GGAATGAATTGGTTACGGGGTAAATAG 60.255 40.741 0.00 0.00 29.42 1.73
3041 3514 2.747855 GAAACTGCCCAGCTCCCG 60.748 66.667 0.00 0.00 0.00 5.14
3079 3552 6.828785 TGGCTTATCTTCCTATCTGTTTTTCC 59.171 38.462 0.00 0.00 0.00 3.13
3097 3570 2.034879 CCATGCACGGTCAGTCCAC 61.035 63.158 0.00 0.00 35.57 4.02
3108 3581 2.498167 GTCAGTCCACATTTGCTCAGT 58.502 47.619 0.00 0.00 0.00 3.41
3131 3604 8.246180 CAGTTTTGCATCATGTTTACCTTCTAT 58.754 33.333 0.00 0.00 0.00 1.98
3132 3605 9.461312 AGTTTTGCATCATGTTTACCTTCTATA 57.539 29.630 0.00 0.00 0.00 1.31
3175 3648 2.236893 CCAAGCAGCAAAATACCCCAAT 59.763 45.455 0.00 0.00 0.00 3.16
3183 3656 4.081476 AGCAAAATACCCCAATTCAGCTTC 60.081 41.667 0.00 0.00 29.66 3.86
3239 3722 4.503741 CAAGGATTGTTAACCTGTGTGG 57.496 45.455 2.48 0.00 42.34 4.17
3286 3769 8.837389 CAAACTTGGTAGAGCTTAGTAAGTTTT 58.163 33.333 18.65 3.60 41.92 2.43
3346 3829 4.283467 AGTCATGTGTCTGCTGTTACCTAA 59.717 41.667 0.00 0.00 0.00 2.69
3482 3967 5.895636 TGGACACATATTTCATGGTCAAC 57.104 39.130 0.00 0.00 0.00 3.18
3572 4067 3.499918 CCATATGGCTCAGATTCCGTTTC 59.500 47.826 9.29 0.00 0.00 2.78
3628 4123 9.493206 TTCAGTTGTTCAAATTTACTAAACGTC 57.507 29.630 0.00 0.00 0.00 4.34
3632 4127 8.525876 GTTGTTCAAATTTACTAAACGTCAACC 58.474 33.333 0.00 0.00 0.00 3.77
3638 4133 1.589803 ACTAAACGTCAACCACCTGC 58.410 50.000 0.00 0.00 0.00 4.85
3653 4148 3.052036 CACCTGCCTTTTGTTTCGATTG 58.948 45.455 0.00 0.00 0.00 2.67
3697 4192 0.389391 CGAGGACAAGGCGATACCAT 59.611 55.000 0.00 0.00 43.14 3.55
3721 4216 4.202182 GGTCTAGTCCATGTATAAACGGCA 60.202 45.833 0.64 0.00 0.00 5.69
3822 4317 0.107456 AGTCACCACCAGCAACTGAG 59.893 55.000 0.00 0.00 32.44 3.35
3925 4420 2.529632 GAAACTGCCCTCCCAGATTTT 58.470 47.619 0.00 0.00 36.67 1.82
3954 4449 1.324383 TCTGTACAGCCAACAGACGA 58.676 50.000 18.45 0.00 46.38 4.20
3971 4466 1.134521 ACGAAATAGATTGCTCGGCCA 60.135 47.619 2.24 0.00 35.64 5.36
3981 4476 4.504132 CTCGGCCAGAGCTTACAC 57.496 61.111 2.24 0.00 40.54 2.90
4018 4514 5.580998 TGAATAGGGTTCTACTCAGACAGT 58.419 41.667 0.00 0.00 39.41 3.55
4022 4518 4.484912 AGGGTTCTACTCAGACAGTTTCT 58.515 43.478 0.00 0.00 36.43 2.52
4059 4555 4.446371 AGCAAAAGAGCGAGTTAGCATAT 58.554 39.130 0.00 0.00 40.15 1.78
4096 4592 8.097038 TCTGTAATACTGAGATTGAGCTTGTTT 58.903 33.333 0.00 0.00 0.00 2.83
4116 4612 1.227556 GGCTGGGCTGTACATACCG 60.228 63.158 0.00 0.40 0.00 4.02
4129 4625 1.339727 ACATACCGCCCCTTCAAGTTC 60.340 52.381 0.00 0.00 0.00 3.01
4154 4650 8.217799 TCCCCCTATAATTTTGTAGTTCATGAG 58.782 37.037 0.00 0.00 0.00 2.90
4169 4665 7.440523 AGTTCATGAGATCCAACAAAAGTAC 57.559 36.000 0.00 0.00 0.00 2.73
4170 4666 7.227156 AGTTCATGAGATCCAACAAAAGTACT 58.773 34.615 0.00 0.00 0.00 2.73
4171 4667 7.389053 AGTTCATGAGATCCAACAAAAGTACTC 59.611 37.037 0.00 0.00 0.00 2.59
4172 4668 5.869344 TCATGAGATCCAACAAAAGTACTCG 59.131 40.000 0.00 0.00 0.00 4.18
4173 4669 5.209818 TGAGATCCAACAAAAGTACTCGT 57.790 39.130 0.00 0.00 0.00 4.18
4174 4670 6.335471 TGAGATCCAACAAAAGTACTCGTA 57.665 37.500 0.00 0.00 0.00 3.43
4183 4679 7.011109 CCAACAAAAGTACTCGTATTATGGAGG 59.989 40.741 0.00 0.00 34.58 4.30
4267 5483 4.622933 CGTAATTTGTCTGATGAGGGGACA 60.623 45.833 0.00 0.00 38.07 4.02
4269 5485 1.728323 TTGTCTGATGAGGGGACACA 58.272 50.000 0.00 0.00 39.30 3.72
4277 5493 2.160721 TGAGGGGACACAGAGTATCC 57.839 55.000 0.00 0.00 33.66 2.59
4278 5494 1.646447 TGAGGGGACACAGAGTATCCT 59.354 52.381 0.00 0.00 36.00 3.24
4279 5495 2.044492 TGAGGGGACACAGAGTATCCTT 59.956 50.000 0.00 0.00 34.20 3.36
4280 5496 2.696187 GAGGGGACACAGAGTATCCTTC 59.304 54.545 0.00 0.00 34.20 3.46
4281 5497 2.316372 AGGGGACACAGAGTATCCTTCT 59.684 50.000 0.00 0.00 33.66 2.85
4283 5499 2.696187 GGGACACAGAGTATCCTTCTCC 59.304 54.545 0.00 0.00 33.66 3.71
4285 5501 3.769844 GGACACAGAGTATCCTTCTCCAA 59.230 47.826 0.00 0.00 33.66 3.53
4286 5502 4.142049 GGACACAGAGTATCCTTCTCCAAG 60.142 50.000 0.00 0.00 33.66 3.61
4287 5503 3.196685 ACACAGAGTATCCTTCTCCAAGC 59.803 47.826 0.00 0.00 33.66 4.01
4288 5504 3.450457 CACAGAGTATCCTTCTCCAAGCT 59.550 47.826 0.00 0.00 33.66 3.74
4289 5505 3.704061 ACAGAGTATCCTTCTCCAAGCTC 59.296 47.826 0.00 0.00 33.66 4.09
4290 5506 2.955660 AGAGTATCCTTCTCCAAGCTCG 59.044 50.000 0.00 0.00 33.66 5.03
4293 5509 3.964031 AGTATCCTTCTCCAAGCTCGAAT 59.036 43.478 0.00 0.00 0.00 3.34
4294 5510 2.680312 TCCTTCTCCAAGCTCGAATG 57.320 50.000 0.00 0.00 0.00 2.67
4295 5511 1.012841 CCTTCTCCAAGCTCGAATGC 58.987 55.000 0.00 0.00 0.00 3.56
4296 5512 1.406614 CCTTCTCCAAGCTCGAATGCT 60.407 52.381 0.00 0.00 46.40 3.79
4297 5513 1.932511 CTTCTCCAAGCTCGAATGCTC 59.067 52.381 0.00 0.00 43.24 4.26
4298 5514 0.176680 TCTCCAAGCTCGAATGCTCC 59.823 55.000 0.00 0.00 43.24 4.70
4299 5515 0.177604 CTCCAAGCTCGAATGCTCCT 59.822 55.000 0.00 0.00 43.24 3.69
4300 5516 0.615331 TCCAAGCTCGAATGCTCCTT 59.385 50.000 0.00 0.00 43.24 3.36
4301 5517 1.012841 CCAAGCTCGAATGCTCCTTC 58.987 55.000 0.00 0.00 43.24 3.46
4302 5518 1.676916 CCAAGCTCGAATGCTCCTTCA 60.677 52.381 0.00 0.00 43.24 3.02
4303 5519 2.286872 CAAGCTCGAATGCTCCTTCAT 58.713 47.619 0.00 0.00 43.24 2.57
4304 5520 1.950828 AGCTCGAATGCTCCTTCATG 58.049 50.000 0.00 0.00 39.34 3.07
4305 5521 1.483827 AGCTCGAATGCTCCTTCATGA 59.516 47.619 0.00 0.00 39.34 3.07
4306 5522 2.093288 AGCTCGAATGCTCCTTCATGAA 60.093 45.455 8.12 8.12 39.34 2.57
4307 5523 2.031437 GCTCGAATGCTCCTTCATGAAC 59.969 50.000 3.38 0.00 0.00 3.18
4308 5524 3.264947 CTCGAATGCTCCTTCATGAACA 58.735 45.455 3.38 1.18 0.00 3.18
4309 5525 3.264947 TCGAATGCTCCTTCATGAACAG 58.735 45.455 3.38 4.73 0.00 3.16
4310 5526 3.005554 CGAATGCTCCTTCATGAACAGT 58.994 45.455 3.38 0.00 0.00 3.55
4311 5527 4.081697 TCGAATGCTCCTTCATGAACAGTA 60.082 41.667 3.38 3.59 0.00 2.74
4319 5535 8.855110 TGCTCCTTCATGAACAGTAAAATAAAA 58.145 29.630 3.38 0.00 0.00 1.52
4320 5536 9.346725 GCTCCTTCATGAACAGTAAAATAAAAG 57.653 33.333 3.38 0.00 0.00 2.27
4411 5627 5.927819 TCAAAAATGCCATTCTTGGAAGTT 58.072 33.333 3.78 0.00 46.92 2.66
4412 5628 5.759273 TCAAAAATGCCATTCTTGGAAGTTG 59.241 36.000 3.78 0.00 46.92 3.16
4453 5670 7.984617 TGCTTTAAAAATGCTAGTTTTGGAAGT 59.015 29.630 0.00 0.00 32.34 3.01
4465 5682 6.405278 AGTTTTGGAAGTATTTTGGAGTGG 57.595 37.500 0.00 0.00 0.00 4.00
4510 5730 0.733566 ACGAATGCCATTTTGCGCTG 60.734 50.000 9.73 0.00 0.00 5.18
4528 5748 3.182972 CGCTGAAATTTGTCTGCCAAAAG 59.817 43.478 0.00 0.00 45.72 2.27
4530 5750 4.810491 GCTGAAATTTGTCTGCCAAAAGAA 59.190 37.500 0.00 0.00 45.72 2.52
4534 5754 6.482973 TGAAATTTGTCTGCCAAAAGAAATCC 59.517 34.615 0.00 0.00 45.72 3.01
4537 5757 2.892852 TGTCTGCCAAAAGAAATCCAGG 59.107 45.455 0.00 0.00 0.00 4.45
4542 5779 4.702831 TGCCAAAAGAAATCCAGGTTTTC 58.297 39.130 13.37 13.37 34.08 2.29
4578 5815 5.930837 TGTTAGGGAGCATTAATTTTGGG 57.069 39.130 0.00 0.00 0.00 4.12
4585 5822 4.436332 GAGCATTAATTTTGGGGCAGAAG 58.564 43.478 0.00 0.00 0.00 2.85
4594 5831 0.693049 TGGGGCAGAAGAGGACTTTC 59.307 55.000 0.00 0.00 36.39 2.62
4607 5844 2.087646 GGACTTTCCTGATGAGGTTGC 58.912 52.381 0.00 0.00 40.76 4.17
4608 5845 2.290577 GGACTTTCCTGATGAGGTTGCT 60.291 50.000 0.00 0.00 40.76 3.91
4672 5909 1.002069 TGGATATCCATGGCATCCCC 58.998 55.000 28.77 17.70 42.01 4.81
4686 5923 1.824852 CATCCCCAAGTAAAACTGCCC 59.175 52.381 0.00 0.00 0.00 5.36
4687 5924 1.154430 TCCCCAAGTAAAACTGCCCT 58.846 50.000 0.00 0.00 0.00 5.19
4688 5925 1.203001 TCCCCAAGTAAAACTGCCCTG 60.203 52.381 0.00 0.00 0.00 4.45
4691 5928 1.327303 CAAGTAAAACTGCCCTGCCA 58.673 50.000 0.00 0.00 0.00 4.92
4715 5952 4.650972 AGGTAAACCTGATGGCTGTTAA 57.349 40.909 0.00 0.00 46.55 2.01
4716 5953 4.589908 AGGTAAACCTGATGGCTGTTAAG 58.410 43.478 0.00 0.00 46.55 1.85
4717 5954 4.042934 AGGTAAACCTGATGGCTGTTAAGT 59.957 41.667 0.00 0.00 46.55 2.24
4718 5955 4.765339 GGTAAACCTGATGGCTGTTAAGTT 59.235 41.667 0.00 0.00 36.63 2.66
4719 5956 5.243060 GGTAAACCTGATGGCTGTTAAGTTT 59.757 40.000 0.00 0.00 36.63 2.66
4720 5957 5.869649 AAACCTGATGGCTGTTAAGTTTT 57.130 34.783 0.00 0.00 36.63 2.43
4721 5958 4.853924 ACCTGATGGCTGTTAAGTTTTG 57.146 40.909 0.00 0.00 36.63 2.44
4722 5959 4.215109 ACCTGATGGCTGTTAAGTTTTGT 58.785 39.130 0.00 0.00 36.63 2.83
4723 5960 4.649218 ACCTGATGGCTGTTAAGTTTTGTT 59.351 37.500 0.00 0.00 36.63 2.83
4724 5961 4.984161 CCTGATGGCTGTTAAGTTTTGTTG 59.016 41.667 0.00 0.00 0.00 3.33
4725 5962 5.451798 CCTGATGGCTGTTAAGTTTTGTTGT 60.452 40.000 0.00 0.00 0.00 3.32
4726 5963 5.971763 TGATGGCTGTTAAGTTTTGTTGTT 58.028 33.333 0.00 0.00 0.00 2.83
4727 5964 7.101652 TGATGGCTGTTAAGTTTTGTTGTTA 57.898 32.000 0.00 0.00 0.00 2.41
4728 5965 7.548097 TGATGGCTGTTAAGTTTTGTTGTTAA 58.452 30.769 0.00 0.00 0.00 2.01
4729 5966 7.489757 TGATGGCTGTTAAGTTTTGTTGTTAAC 59.510 33.333 0.00 0.00 37.23 2.01
4730 5967 5.800941 TGGCTGTTAAGTTTTGTTGTTAACG 59.199 36.000 0.26 0.00 38.81 3.18
4731 5968 5.276020 GGCTGTTAAGTTTTGTTGTTAACGC 60.276 40.000 0.26 0.00 38.81 4.84
4732 5969 5.513849 GCTGTTAAGTTTTGTTGTTAACGCT 59.486 36.000 0.26 0.00 38.81 5.07
4733 5970 6.505732 GCTGTTAAGTTTTGTTGTTAACGCTG 60.506 38.462 0.26 0.00 38.81 5.18
4734 5971 5.800941 TGTTAAGTTTTGTTGTTAACGCTGG 59.199 36.000 0.26 0.00 38.81 4.85
4735 5972 4.443913 AAGTTTTGTTGTTAACGCTGGT 57.556 36.364 0.26 0.00 0.00 4.00
4736 5973 5.564048 AAGTTTTGTTGTTAACGCTGGTA 57.436 34.783 0.26 0.00 0.00 3.25
4737 5974 5.564048 AGTTTTGTTGTTAACGCTGGTAA 57.436 34.783 0.26 0.00 0.00 2.85
4738 5975 6.139048 AGTTTTGTTGTTAACGCTGGTAAT 57.861 33.333 0.26 0.00 0.00 1.89
4739 5976 6.203647 AGTTTTGTTGTTAACGCTGGTAATC 58.796 36.000 0.26 0.00 0.00 1.75
4740 5977 5.752892 TTTGTTGTTAACGCTGGTAATCA 57.247 34.783 0.26 0.00 0.00 2.57
4741 5978 5.950758 TTGTTGTTAACGCTGGTAATCAT 57.049 34.783 0.26 0.00 0.00 2.45
4742 5979 7.436430 TTTGTTGTTAACGCTGGTAATCATA 57.564 32.000 0.26 0.00 0.00 2.15
4743 5980 7.618502 TTGTTGTTAACGCTGGTAATCATAT 57.381 32.000 0.26 0.00 0.00 1.78
4744 5981 7.010697 TGTTGTTAACGCTGGTAATCATATG 57.989 36.000 0.26 0.00 0.00 1.78
4745 5982 5.666969 TGTTAACGCTGGTAATCATATGC 57.333 39.130 0.26 0.00 0.00 3.14
4746 5983 5.119694 TGTTAACGCTGGTAATCATATGCA 58.880 37.500 0.26 0.00 0.00 3.96
4747 5984 5.762711 TGTTAACGCTGGTAATCATATGCAT 59.237 36.000 3.79 3.79 0.00 3.96
4748 5985 6.931840 TGTTAACGCTGGTAATCATATGCATA 59.068 34.615 9.27 9.27 0.00 3.14
4749 5986 7.606073 TGTTAACGCTGGTAATCATATGCATAT 59.394 33.333 13.63 13.63 0.00 1.78
4750 5987 9.093970 GTTAACGCTGGTAATCATATGCATATA 57.906 33.333 18.70 8.32 0.00 0.86
4751 5988 9.830975 TTAACGCTGGTAATCATATGCATATAT 57.169 29.630 18.70 10.69 0.00 0.86
4752 5989 7.719778 ACGCTGGTAATCATATGCATATATG 57.280 36.000 18.70 10.77 44.90 1.78
4753 5990 7.275183 ACGCTGGTAATCATATGCATATATGT 58.725 34.615 18.70 9.19 44.23 2.29
4754 5991 8.421002 ACGCTGGTAATCATATGCATATATGTA 58.579 33.333 18.70 10.24 44.23 2.29
4755 5992 9.260002 CGCTGGTAATCATATGCATATATGTAA 57.740 33.333 18.70 3.89 44.23 2.41
4763 6000 7.747888 TCATATGCATATATGTAACCAAACGC 58.252 34.615 18.70 0.00 44.23 4.84
4764 6001 7.606073 TCATATGCATATATGTAACCAAACGCT 59.394 33.333 18.70 0.00 44.23 5.07
4765 6002 5.416862 TGCATATATGTAACCAAACGCTG 57.583 39.130 14.14 0.00 0.00 5.18
4771 6008 2.441164 AACCAAACGCTGGGTGCA 60.441 55.556 8.86 0.00 46.64 4.57
4772 6009 2.055042 AACCAAACGCTGGGTGCAA 61.055 52.632 8.86 0.00 46.64 4.08
4773 6010 1.608717 AACCAAACGCTGGGTGCAAA 61.609 50.000 8.86 0.00 46.64 3.68
4774 6011 1.367102 CCAAACGCTGGGTGCAAAT 59.633 52.632 0.00 0.00 42.17 2.32
4775 6012 0.249826 CCAAACGCTGGGTGCAAATT 60.250 50.000 0.00 0.00 42.17 1.82
4776 6013 0.860533 CAAACGCTGGGTGCAAATTG 59.139 50.000 0.00 0.00 43.06 2.32
4777 6014 0.879839 AAACGCTGGGTGCAAATTGC 60.880 50.000 11.58 11.58 45.29 3.56
4793 6030 7.398834 GCAAATTGCATCTCCATAACAATAC 57.601 36.000 13.73 0.00 44.26 1.89
4794 6031 6.421801 GCAAATTGCATCTCCATAACAATACC 59.578 38.462 13.73 0.00 44.26 2.73
4795 6032 6.655078 AATTGCATCTCCATAACAATACCC 57.345 37.500 0.00 0.00 31.05 3.69
4796 6033 4.098914 TGCATCTCCATAACAATACCCC 57.901 45.455 0.00 0.00 0.00 4.95
4797 6034 3.721575 TGCATCTCCATAACAATACCCCT 59.278 43.478 0.00 0.00 0.00 4.79
4798 6035 4.910913 TGCATCTCCATAACAATACCCCTA 59.089 41.667 0.00 0.00 0.00 3.53
4799 6036 5.371176 TGCATCTCCATAACAATACCCCTAA 59.629 40.000 0.00 0.00 0.00 2.69
4800 6037 6.045459 TGCATCTCCATAACAATACCCCTAAT 59.955 38.462 0.00 0.00 0.00 1.73
4801 6038 6.375455 GCATCTCCATAACAATACCCCTAATG 59.625 42.308 0.00 0.00 0.00 1.90
4802 6039 5.876357 TCTCCATAACAATACCCCTAATGC 58.124 41.667 0.00 0.00 0.00 3.56
4803 6040 5.371176 TCTCCATAACAATACCCCTAATGCA 59.629 40.000 0.00 0.00 0.00 3.96
4804 6041 5.630121 TCCATAACAATACCCCTAATGCAG 58.370 41.667 0.00 0.00 0.00 4.41
4805 6042 4.766891 CCATAACAATACCCCTAATGCAGG 59.233 45.833 0.00 0.00 45.07 4.85
4806 6043 2.364972 ACAATACCCCTAATGCAGGC 57.635 50.000 0.00 0.00 43.98 4.85
4807 6044 1.568597 ACAATACCCCTAATGCAGGCA 59.431 47.619 0.00 0.00 43.98 4.75
4808 6045 2.024464 ACAATACCCCTAATGCAGGCAA 60.024 45.455 0.00 0.00 43.98 4.52
4809 6046 2.362077 CAATACCCCTAATGCAGGCAAC 59.638 50.000 0.00 0.00 43.98 4.17
4810 6047 0.257616 TACCCCTAATGCAGGCAACC 59.742 55.000 0.00 0.00 43.98 3.77
4811 6048 1.000233 CCCCTAATGCAGGCAACCA 60.000 57.895 0.00 0.00 43.98 3.67
4812 6049 0.614415 CCCCTAATGCAGGCAACCAA 60.614 55.000 0.00 0.00 43.98 3.67
4813 6050 1.488390 CCCTAATGCAGGCAACCAAT 58.512 50.000 0.00 0.00 43.98 3.16
4814 6051 1.410153 CCCTAATGCAGGCAACCAATC 59.590 52.381 0.00 0.00 43.98 2.67
4815 6052 2.101783 CCTAATGCAGGCAACCAATCA 58.898 47.619 0.00 0.00 37.70 2.57
4816 6053 2.159198 CCTAATGCAGGCAACCAATCAC 60.159 50.000 0.00 0.00 37.70 3.06
4817 6054 1.636148 AATGCAGGCAACCAATCACT 58.364 45.000 0.00 0.00 37.17 3.41
4818 6055 2.512692 ATGCAGGCAACCAATCACTA 57.487 45.000 0.00 0.00 37.17 2.74
4819 6056 1.825090 TGCAGGCAACCAATCACTAG 58.175 50.000 0.00 0.00 37.17 2.57
4820 6057 1.098050 GCAGGCAACCAATCACTAGG 58.902 55.000 0.00 0.00 37.17 3.02
4821 6058 1.614317 GCAGGCAACCAATCACTAGGT 60.614 52.381 0.00 0.00 40.61 3.08
4822 6059 2.359900 CAGGCAACCAATCACTAGGTC 58.640 52.381 0.00 0.00 37.07 3.85
4823 6060 1.985159 AGGCAACCAATCACTAGGTCA 59.015 47.619 0.00 0.00 37.07 4.02
4824 6061 2.578021 AGGCAACCAATCACTAGGTCAT 59.422 45.455 0.00 0.00 37.07 3.06
4825 6062 2.945668 GGCAACCAATCACTAGGTCATC 59.054 50.000 0.00 0.00 37.07 2.92
4826 6063 3.370953 GGCAACCAATCACTAGGTCATCT 60.371 47.826 0.00 0.00 37.07 2.90
4827 6064 4.141711 GGCAACCAATCACTAGGTCATCTA 60.142 45.833 0.00 0.00 37.07 1.98
4828 6065 4.811557 GCAACCAATCACTAGGTCATCTAC 59.188 45.833 0.00 0.00 37.07 2.59
4829 6066 4.920640 ACCAATCACTAGGTCATCTACG 57.079 45.455 0.00 0.00 30.79 3.51
4830 6067 4.279145 ACCAATCACTAGGTCATCTACGT 58.721 43.478 0.00 0.00 30.79 3.57
4831 6068 4.710375 ACCAATCACTAGGTCATCTACGTT 59.290 41.667 0.00 0.00 30.79 3.99
4832 6069 5.187186 ACCAATCACTAGGTCATCTACGTTT 59.813 40.000 0.00 0.00 30.79 3.60
4833 6070 6.106673 CCAATCACTAGGTCATCTACGTTTT 58.893 40.000 0.00 0.00 0.00 2.43
4834 6071 6.594159 CCAATCACTAGGTCATCTACGTTTTT 59.406 38.462 0.00 0.00 0.00 1.94
4853 6090 4.479786 TTTTGCCCTGTTTTTGCTTACT 57.520 36.364 0.00 0.00 0.00 2.24
4854 6091 5.599999 TTTTGCCCTGTTTTTGCTTACTA 57.400 34.783 0.00 0.00 0.00 1.82
4855 6092 4.846779 TTGCCCTGTTTTTGCTTACTAG 57.153 40.909 0.00 0.00 0.00 2.57
4856 6093 3.153919 TGCCCTGTTTTTGCTTACTAGG 58.846 45.455 0.00 0.00 0.00 3.02
4857 6094 2.094700 GCCCTGTTTTTGCTTACTAGGC 60.095 50.000 0.00 0.00 0.00 3.93
4858 6095 2.492088 CCCTGTTTTTGCTTACTAGGCC 59.508 50.000 0.00 0.00 0.00 5.19
4859 6096 2.492088 CCTGTTTTTGCTTACTAGGCCC 59.508 50.000 0.00 0.00 0.00 5.80
4860 6097 3.421844 CTGTTTTTGCTTACTAGGCCCT 58.578 45.455 0.00 0.00 0.00 5.19
4861 6098 3.826729 CTGTTTTTGCTTACTAGGCCCTT 59.173 43.478 0.00 0.00 0.00 3.95
4862 6099 3.824443 TGTTTTTGCTTACTAGGCCCTTC 59.176 43.478 0.00 0.00 0.00 3.46
4863 6100 4.079970 GTTTTTGCTTACTAGGCCCTTCT 58.920 43.478 0.00 0.00 0.00 2.85
4864 6101 3.629142 TTTGCTTACTAGGCCCTTCTC 57.371 47.619 0.00 0.00 0.00 2.87
4865 6102 2.247699 TGCTTACTAGGCCCTTCTCA 57.752 50.000 0.00 0.00 0.00 3.27
4866 6103 2.111384 TGCTTACTAGGCCCTTCTCAG 58.889 52.381 0.00 0.00 0.00 3.35
4867 6104 1.202592 GCTTACTAGGCCCTTCTCAGC 60.203 57.143 0.00 0.00 0.00 4.26
4872 6109 2.270527 GGCCCTTCTCAGCCTGAC 59.729 66.667 0.00 0.00 46.14 3.51
4873 6110 2.297129 GGCCCTTCTCAGCCTGACT 61.297 63.158 0.00 0.00 46.14 3.41
4874 6111 1.220477 GCCCTTCTCAGCCTGACTC 59.780 63.158 0.00 0.00 0.00 3.36
4875 6112 1.515020 CCCTTCTCAGCCTGACTCG 59.485 63.158 0.00 0.00 0.00 4.18
4876 6113 1.254284 CCCTTCTCAGCCTGACTCGT 61.254 60.000 0.00 0.00 0.00 4.18
4877 6114 0.605589 CCTTCTCAGCCTGACTCGTT 59.394 55.000 0.00 0.00 0.00 3.85
4878 6115 1.001406 CCTTCTCAGCCTGACTCGTTT 59.999 52.381 0.00 0.00 0.00 3.60
4879 6116 2.548920 CCTTCTCAGCCTGACTCGTTTT 60.549 50.000 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.283298 CATACAGCTCAGCGAAACCAT 58.717 47.619 0.00 0.00 0.00 3.55
47 48 2.679082 ACGATCCTGGGCATTACTAGT 58.321 47.619 0.00 0.00 0.00 2.57
52 53 2.047061 AGCTTACGATCCTGGGCATTA 58.953 47.619 0.00 0.00 0.00 1.90
132 133 6.306199 TGACTGAAGAAAATTCCCTCAATGA 58.694 36.000 0.00 0.00 0.00 2.57
151 152 2.352651 CACAACATTAGCCGGATGACTG 59.647 50.000 5.05 6.31 0.00 3.51
154 155 2.779755 ACACAACATTAGCCGGATGA 57.220 45.000 5.05 0.00 0.00 2.92
164 165 8.106247 AGAACGACCAATTTATACACAACATT 57.894 30.769 0.00 0.00 0.00 2.71
185 186 2.941720 CCTTCCAGAGCTGCAATAGAAC 59.058 50.000 1.02 0.00 0.00 3.01
229 230 4.194720 AGACGATCCACGCCGAGC 62.195 66.667 0.00 0.00 46.94 5.03
258 259 0.823356 TTCAGCACACTTGGCCTTCC 60.823 55.000 3.32 0.00 0.00 3.46
277 278 0.892755 TCTATCCGACACGCCAAAGT 59.107 50.000 0.00 0.00 0.00 2.66
281 282 2.125326 CCCTCTATCCGACACGCCA 61.125 63.158 0.00 0.00 0.00 5.69
375 381 1.139520 GCCCAAATAGCAACGCAGG 59.860 57.895 0.00 0.00 0.00 4.85
382 388 2.276732 GCATAGAGGCCCAAATAGCA 57.723 50.000 0.00 0.00 0.00 3.49
398 405 0.040204 AAAGCAGGGCTACAAGGCAT 59.960 50.000 2.75 0.00 43.44 4.40
444 455 6.012771 AGGCCCTTAAAGTACAAATAGTCAGT 60.013 38.462 0.00 0.00 0.00 3.41
508 520 5.529430 TCCTAATTCGACTTGCACTTTTCAA 59.471 36.000 0.00 0.00 0.00 2.69
510 522 5.607119 TCCTAATTCGACTTGCACTTTTC 57.393 39.130 0.00 0.00 0.00 2.29
511 523 4.083271 GCTCCTAATTCGACTTGCACTTTT 60.083 41.667 0.00 0.00 0.00 2.27
512 524 3.437049 GCTCCTAATTCGACTTGCACTTT 59.563 43.478 0.00 0.00 0.00 2.66
513 525 3.003480 GCTCCTAATTCGACTTGCACTT 58.997 45.455 0.00 0.00 0.00 3.16
514 526 2.234908 AGCTCCTAATTCGACTTGCACT 59.765 45.455 0.00 0.00 0.00 4.40
515 527 2.605366 GAGCTCCTAATTCGACTTGCAC 59.395 50.000 0.87 0.00 0.00 4.57
516 528 2.233676 TGAGCTCCTAATTCGACTTGCA 59.766 45.455 12.15 0.00 0.00 4.08
517 529 2.893637 TGAGCTCCTAATTCGACTTGC 58.106 47.619 12.15 0.00 0.00 4.01
518 530 6.128172 ACAATTTGAGCTCCTAATTCGACTTG 60.128 38.462 12.15 8.21 29.87 3.16
519 531 5.940470 ACAATTTGAGCTCCTAATTCGACTT 59.060 36.000 12.15 0.00 29.87 3.01
520 532 5.491982 ACAATTTGAGCTCCTAATTCGACT 58.508 37.500 12.15 0.00 29.87 4.18
521 533 5.803020 ACAATTTGAGCTCCTAATTCGAC 57.197 39.130 12.15 0.00 29.87 4.20
522 534 6.429692 TCAAACAATTTGAGCTCCTAATTCGA 59.570 34.615 12.15 7.85 44.21 3.71
523 535 6.611381 TCAAACAATTTGAGCTCCTAATTCG 58.389 36.000 12.15 12.88 44.21 3.34
540 552 9.676195 CATCAATGTTAGTACAACATCAAACAA 57.324 29.630 17.99 6.75 39.73 2.83
541 553 8.845227 ACATCAATGTTAGTACAACATCAAACA 58.155 29.630 17.99 7.80 39.73 2.83
542 554 9.117145 CACATCAATGTTAGTACAACATCAAAC 57.883 33.333 17.99 3.58 39.73 2.93
543 555 8.845227 ACACATCAATGTTAGTACAACATCAAA 58.155 29.630 17.99 10.66 39.73 2.69
544 556 8.288913 CACACATCAATGTTAGTACAACATCAA 58.711 33.333 17.99 12.30 39.73 2.57
545 557 7.443879 ACACACATCAATGTTAGTACAACATCA 59.556 33.333 17.99 11.57 39.73 3.07
546 558 7.806690 ACACACATCAATGTTAGTACAACATC 58.193 34.615 17.99 0.00 39.73 3.06
547 559 7.661437 AGACACACATCAATGTTAGTACAACAT 59.339 33.333 14.20 14.20 42.19 2.71
548 560 6.989759 AGACACACATCAATGTTAGTACAACA 59.010 34.615 11.53 11.53 39.39 3.33
549 561 7.421530 AGACACACATCAATGTTAGTACAAC 57.578 36.000 0.00 0.00 39.39 3.32
550 562 8.145122 TGTAGACACACATCAATGTTAGTACAA 58.855 33.333 0.00 0.00 39.39 2.41
551 563 7.662897 TGTAGACACACATCAATGTTAGTACA 58.337 34.615 0.00 0.00 39.39 2.90
552 564 8.528917 TTGTAGACACACATCAATGTTAGTAC 57.471 34.615 0.00 0.00 39.39 2.73
553 565 9.719355 AATTGTAGACACACATCAATGTTAGTA 57.281 29.630 0.00 0.00 39.39 1.82
554 566 8.621532 AATTGTAGACACACATCAATGTTAGT 57.378 30.769 0.00 0.00 39.39 2.24
555 567 9.897744 AAAATTGTAGACACACATCAATGTTAG 57.102 29.630 0.00 0.00 39.39 2.34
603 615 8.136165 GCTTTAGCTGAGATCAATGAAATCAAT 58.864 33.333 0.00 0.00 38.21 2.57
604 616 7.478322 GCTTTAGCTGAGATCAATGAAATCAA 58.522 34.615 0.00 0.00 38.21 2.57
605 617 7.024340 GCTTTAGCTGAGATCAATGAAATCA 57.976 36.000 0.00 0.00 38.21 2.57
622 634 1.669604 GGGCAAGGTCTAGCTTTAGC 58.330 55.000 0.00 0.00 42.49 3.09
623 635 1.134068 GGGGGCAAGGTCTAGCTTTAG 60.134 57.143 0.00 0.00 0.00 1.85
624 636 0.916809 GGGGGCAAGGTCTAGCTTTA 59.083 55.000 0.00 0.00 0.00 1.85
625 637 1.691823 GGGGGCAAGGTCTAGCTTT 59.308 57.895 0.00 0.00 0.00 3.51
626 638 3.416351 GGGGGCAAGGTCTAGCTT 58.584 61.111 0.00 0.00 0.00 3.74
640 652 0.108774 GCTCTAGGGAAATTCGGGGG 59.891 60.000 0.00 0.00 0.00 5.40
641 653 0.837272 TGCTCTAGGGAAATTCGGGG 59.163 55.000 0.00 0.00 0.00 5.73
642 654 2.170607 TCTTGCTCTAGGGAAATTCGGG 59.829 50.000 0.00 0.00 0.00 5.14
643 655 3.133003 TCTCTTGCTCTAGGGAAATTCGG 59.867 47.826 0.00 0.00 0.00 4.30
644 656 4.392921 TCTCTTGCTCTAGGGAAATTCG 57.607 45.455 0.00 0.00 0.00 3.34
645 657 4.574421 GCTTCTCTTGCTCTAGGGAAATTC 59.426 45.833 0.00 0.00 34.35 2.17
646 658 4.522114 GCTTCTCTTGCTCTAGGGAAATT 58.478 43.478 0.00 0.00 34.35 1.82
647 659 3.118075 GGCTTCTCTTGCTCTAGGGAAAT 60.118 47.826 0.00 0.00 34.35 2.17
648 660 2.237392 GGCTTCTCTTGCTCTAGGGAAA 59.763 50.000 0.00 0.00 34.35 3.13
649 661 1.834263 GGCTTCTCTTGCTCTAGGGAA 59.166 52.381 0.00 0.00 33.67 3.97
650 662 1.273267 TGGCTTCTCTTGCTCTAGGGA 60.273 52.381 0.00 0.00 0.00 4.20
651 663 1.134551 GTGGCTTCTCTTGCTCTAGGG 60.135 57.143 0.00 0.00 0.00 3.53
652 664 1.552337 TGTGGCTTCTCTTGCTCTAGG 59.448 52.381 0.00 0.00 0.00 3.02
653 665 2.418471 CCTGTGGCTTCTCTTGCTCTAG 60.418 54.545 0.00 0.00 0.00 2.43
654 666 1.552337 CCTGTGGCTTCTCTTGCTCTA 59.448 52.381 0.00 0.00 0.00 2.43
655 667 0.324285 CCTGTGGCTTCTCTTGCTCT 59.676 55.000 0.00 0.00 0.00 4.09
656 668 0.676151 CCCTGTGGCTTCTCTTGCTC 60.676 60.000 0.00 0.00 0.00 4.26
657 669 1.377994 CCCTGTGGCTTCTCTTGCT 59.622 57.895 0.00 0.00 0.00 3.91
658 670 0.538287 AACCCTGTGGCTTCTCTTGC 60.538 55.000 0.00 0.00 33.59 4.01
659 671 1.242076 CAACCCTGTGGCTTCTCTTG 58.758 55.000 0.00 0.00 33.59 3.02
660 672 0.111253 CCAACCCTGTGGCTTCTCTT 59.889 55.000 0.00 0.00 33.59 2.85
661 673 1.062488 ACCAACCCTGTGGCTTCTCT 61.062 55.000 0.00 0.00 43.00 3.10
662 674 0.890996 CACCAACCCTGTGGCTTCTC 60.891 60.000 0.00 0.00 43.00 2.87
663 675 1.151450 CACCAACCCTGTGGCTTCT 59.849 57.895 0.00 0.00 43.00 2.85
664 676 0.467290 TTCACCAACCCTGTGGCTTC 60.467 55.000 0.00 0.00 43.00 3.86
665 677 0.468029 CTTCACCAACCCTGTGGCTT 60.468 55.000 0.00 0.00 43.00 4.35
666 678 1.151450 CTTCACCAACCCTGTGGCT 59.849 57.895 0.00 0.00 43.00 4.75
667 679 2.564721 GCTTCACCAACCCTGTGGC 61.565 63.158 0.00 0.00 43.00 5.01
668 680 1.903404 GGCTTCACCAACCCTGTGG 60.903 63.158 0.00 0.00 44.92 4.17
669 681 2.260869 CGGCTTCACCAACCCTGTG 61.261 63.158 0.00 0.00 39.03 3.66
670 682 2.113139 CGGCTTCACCAACCCTGT 59.887 61.111 0.00 0.00 39.03 4.00
671 683 2.672996 CCGGCTTCACCAACCCTG 60.673 66.667 0.00 0.00 39.03 4.45
996 1010 3.390521 TCAGGCTCCGGCATCGTT 61.391 61.111 0.00 0.00 40.87 3.85
999 1013 3.838271 TCGTCAGGCTCCGGCATC 61.838 66.667 0.00 0.00 40.87 3.91
1710 1727 2.687932 TCCCCGCCGTCCCAATAA 60.688 61.111 0.00 0.00 0.00 1.40
1932 1949 5.856986 CAGAAAAATTGAGCACTGATGTCTG 59.143 40.000 0.00 0.00 0.00 3.51
2123 2154 9.559732 CAGAAGTTTTATACCATGATGACCATA 57.440 33.333 0.00 0.00 33.31 2.74
2124 2155 7.503566 CCAGAAGTTTTATACCATGATGACCAT 59.496 37.037 0.00 0.00 35.44 3.55
2138 2169 8.934023 TCACAGGATTTAACCAGAAGTTTTAT 57.066 30.769 0.00 0.00 40.05 1.40
2139 2170 8.792633 CATCACAGGATTTAACCAGAAGTTTTA 58.207 33.333 0.00 0.00 40.05 1.52
2140 2171 7.661040 CATCACAGGATTTAACCAGAAGTTTT 58.339 34.615 0.00 0.00 40.05 2.43
2141 2172 6.294731 GCATCACAGGATTTAACCAGAAGTTT 60.295 38.462 0.00 0.00 40.05 2.66
2250 2289 6.704493 AGTAACATTTCTTTGACGTCTGCTTA 59.296 34.615 17.92 4.01 0.00 3.09
2336 2375 9.548631 TTAAAATCCAAATGTAACCAATAGGGA 57.451 29.630 0.00 0.00 41.15 4.20
2344 2395 8.896320 AAAGGTGTTAAAATCCAAATGTAACC 57.104 30.769 0.00 0.00 0.00 2.85
2370 2421 5.582953 AGATTTTGGTCATTCAATGAGGGA 58.417 37.500 0.00 0.00 40.53 4.20
2426 2477 6.916360 ATTTGGATAAACAGGCTCAAGAAA 57.084 33.333 0.00 0.00 0.00 2.52
2450 2501 4.431809 CGAGAACATCTTTCAGAGAGCAT 58.568 43.478 0.00 0.00 37.93 3.79
2451 2502 3.842820 CGAGAACATCTTTCAGAGAGCA 58.157 45.455 0.00 0.00 37.93 4.26
2559 2610 9.109393 GGCATTATCTTCTGTCTTAAACATGTA 57.891 33.333 0.00 0.00 37.23 2.29
2571 2622 3.549794 GCTTCCTGGCATTATCTTCTGT 58.450 45.455 0.00 0.00 0.00 3.41
2593 2644 4.173256 CGCCATTTGTCTTATTTTCACCC 58.827 43.478 0.00 0.00 0.00 4.61
2639 2690 2.173356 CCTTGGATATGGAGCCAGTGAA 59.827 50.000 0.00 0.00 43.55 3.18
2673 2728 1.629861 CCCCTTTGGACAATTGGCATT 59.370 47.619 14.60 0.00 35.39 3.56
2693 2748 5.938322 TGATCGCTTTTGGATAAACTGTTC 58.062 37.500 0.00 0.00 0.00 3.18
2712 2768 9.120538 TGAAAACCTAATAACCTAGCAATGATC 57.879 33.333 0.00 0.00 0.00 2.92
2778 2936 8.892723 CAATAATATGCCACTTTTCTCAGTGTA 58.107 33.333 0.44 0.00 42.45 2.90
2780 2938 7.988737 TCAATAATATGCCACTTTTCTCAGTG 58.011 34.615 0.00 0.00 43.46 3.66
2847 3006 7.092264 TGGAACTCTAGGAAAATCCATTCAGAT 60.092 37.037 0.00 0.00 39.61 2.90
2892 3051 2.564947 AGAGACGCCTCTCATTGTTTCT 59.435 45.455 14.12 0.00 46.38 2.52
2915 3074 9.451206 AACCAATTCATTCCCTAATAATTCCAT 57.549 29.630 0.00 0.00 0.00 3.41
2954 3113 9.508567 GCCTGAGATTTTTGTAGAATTTGATAC 57.491 33.333 0.00 0.00 0.00 2.24
3041 3514 6.017026 GGAAGATAAGCCAGCAGTAAAATACC 60.017 42.308 0.00 0.00 0.00 2.73
3079 3552 2.034879 GTGGACTGACCGTGCATGG 61.035 63.158 23.83 23.83 45.98 3.66
3097 3570 4.688879 ACATGATGCAAAACTGAGCAAATG 59.311 37.500 0.00 0.00 44.88 2.32
3175 3648 3.054655 GTGGTACCATTAGGGAAGCTGAA 60.055 47.826 19.72 0.00 41.15 3.02
3183 3656 2.306847 GCCAATGTGGTACCATTAGGG 58.693 52.381 19.72 17.94 40.46 3.53
3329 3812 5.941948 ACATTTTAGGTAACAGCAGACAC 57.058 39.130 0.00 0.00 41.41 3.67
3412 3895 4.022068 TGTGAAATGAGCAAAGATGAACCC 60.022 41.667 0.00 0.00 0.00 4.11
3482 3967 0.937304 CACTCGGACCAACACAACTG 59.063 55.000 0.00 0.00 0.00 3.16
3628 4123 2.549926 GAAACAAAAGGCAGGTGGTTG 58.450 47.619 0.00 0.00 0.00 3.77
3632 4127 3.052036 CAATCGAAACAAAAGGCAGGTG 58.948 45.455 0.00 0.00 0.00 4.00
3638 4133 3.452474 TGCAACCAATCGAAACAAAAGG 58.548 40.909 0.00 0.00 0.00 3.11
3653 4148 1.008538 CGTTTGACAGCCTGCAACC 60.009 57.895 0.00 0.00 0.00 3.77
3697 4192 4.202182 GCCGTTTATACATGGACTAGACCA 60.202 45.833 16.36 16.36 44.41 4.02
3721 4216 1.059913 CTCTGGAAGGTGAAGGTGGT 58.940 55.000 0.00 0.00 0.00 4.16
3801 4296 1.526917 AGTTGCTGGTGGTGACTGC 60.527 57.895 0.00 0.00 0.00 4.40
3822 4317 4.310769 CCGAGAGAATACCATCACCATTC 58.689 47.826 0.00 0.00 0.00 2.67
3925 4420 5.046663 TGTTGGCTGTACAGATCTCAATGTA 60.047 40.000 27.08 11.19 0.00 2.29
3954 4449 2.843701 CTCTGGCCGAGCAATCTATTT 58.156 47.619 10.89 0.00 31.99 1.40
3971 4466 4.039730 ACACAGTTCATGAGTGTAAGCTCT 59.960 41.667 15.43 0.00 44.02 4.09
3981 4476 5.248640 ACCCTATTCAACACAGTTCATGAG 58.751 41.667 0.00 0.00 0.00 2.90
4018 4514 3.384146 TGCTTTGCCTGACAAATGAGAAA 59.616 39.130 0.00 0.00 46.90 2.52
4022 4518 3.815856 TTTGCTTTGCCTGACAAATGA 57.184 38.095 0.00 0.00 46.90 2.57
4096 4592 1.682451 GGTATGTACAGCCCAGCCGA 61.682 60.000 0.33 0.00 0.00 5.54
4116 4612 1.212250 TAGGGGGAACTTGAAGGGGC 61.212 60.000 0.00 0.00 0.00 5.80
4129 4625 8.217799 TCTCATGAACTACAAAATTATAGGGGG 58.782 37.037 0.00 0.00 0.00 5.40
4154 4650 8.548721 CCATAATACGAGTACTTTTGTTGGATC 58.451 37.037 0.00 0.00 0.00 3.36
4169 4665 7.011950 TGTGTAAATTTGCCTCCATAATACGAG 59.988 37.037 0.00 0.00 0.00 4.18
4170 4666 6.824196 TGTGTAAATTTGCCTCCATAATACGA 59.176 34.615 0.00 0.00 0.00 3.43
4171 4667 7.022055 TGTGTAAATTTGCCTCCATAATACG 57.978 36.000 0.00 0.00 0.00 3.06
4172 4668 7.867403 CCATGTGTAAATTTGCCTCCATAATAC 59.133 37.037 0.00 0.00 0.00 1.89
4173 4669 7.563188 ACCATGTGTAAATTTGCCTCCATAATA 59.437 33.333 0.00 0.00 0.00 0.98
4174 4670 6.383726 ACCATGTGTAAATTTGCCTCCATAAT 59.616 34.615 0.00 0.00 0.00 1.28
4237 4734 6.035435 CCTCATCAGACAAATTACGTCAAGAG 59.965 42.308 9.81 9.62 35.77 2.85
4277 5493 1.932511 GAGCATTCGAGCTTGGAGAAG 59.067 52.381 0.00 0.00 46.75 2.85
4278 5494 1.406069 GGAGCATTCGAGCTTGGAGAA 60.406 52.381 0.00 0.00 46.75 2.87
4279 5495 0.176680 GGAGCATTCGAGCTTGGAGA 59.823 55.000 0.00 0.00 46.75 3.71
4280 5496 0.177604 AGGAGCATTCGAGCTTGGAG 59.822 55.000 0.00 0.00 46.75 3.86
4281 5497 0.615331 AAGGAGCATTCGAGCTTGGA 59.385 50.000 0.00 0.00 46.75 3.53
4283 5499 1.730501 TGAAGGAGCATTCGAGCTTG 58.269 50.000 0.21 0.00 46.75 4.01
4286 5502 1.945387 TCATGAAGGAGCATTCGAGC 58.055 50.000 0.00 0.00 31.52 5.03
4287 5503 3.264947 TGTTCATGAAGGAGCATTCGAG 58.735 45.455 8.80 0.00 31.52 4.04
4288 5504 3.264947 CTGTTCATGAAGGAGCATTCGA 58.735 45.455 8.80 0.00 31.52 3.71
4289 5505 3.005554 ACTGTTCATGAAGGAGCATTCG 58.994 45.455 8.80 0.00 31.52 3.34
4290 5506 6.500684 TTTACTGTTCATGAAGGAGCATTC 57.499 37.500 8.80 0.00 0.00 2.67
4293 5509 7.994425 TTATTTTACTGTTCATGAAGGAGCA 57.006 32.000 8.80 2.23 0.00 4.26
4294 5510 9.346725 CTTTTATTTTACTGTTCATGAAGGAGC 57.653 33.333 8.80 0.00 0.00 4.70
4355 5571 9.862371 TTTGTAACACACATTTGTCAAAGTTAT 57.138 25.926 4.03 0.00 36.90 1.89
4357 5573 8.594881 TTTTGTAACACACATTTGTCAAAGTT 57.405 26.923 4.03 4.91 36.90 2.66
4358 5574 8.594881 TTTTTGTAACACACATTTGTCAAAGT 57.405 26.923 4.03 0.09 36.90 2.66
4424 5640 8.147058 TCCAAAACTAGCATTTTTAAAGCATCA 58.853 29.630 1.36 0.00 29.17 3.07
4425 5641 8.532977 TCCAAAACTAGCATTTTTAAAGCATC 57.467 30.769 1.36 0.00 29.17 3.91
4482 5702 4.419522 AAATGGCATTCGTGTAAGTCAC 57.580 40.909 14.04 0.00 43.03 3.67
4497 5717 2.223845 ACAAATTTCAGCGCAAAATGGC 59.776 40.909 17.96 0.00 0.00 4.40
4498 5718 3.742369 AGACAAATTTCAGCGCAAAATGG 59.258 39.130 17.96 15.55 0.00 3.16
4552 5789 7.663493 CCCAAAATTAATGCTCCCTAACAAAAA 59.337 33.333 0.00 0.00 0.00 1.94
4556 5793 4.714308 CCCCAAAATTAATGCTCCCTAACA 59.286 41.667 0.00 0.00 0.00 2.41
4557 5794 4.442893 GCCCCAAAATTAATGCTCCCTAAC 60.443 45.833 0.00 0.00 0.00 2.34
4578 5815 1.625818 TCAGGAAAGTCCTCTTCTGCC 59.374 52.381 0.00 0.00 45.66 4.85
4585 5822 3.604582 CAACCTCATCAGGAAAGTCCTC 58.395 50.000 0.00 0.00 45.66 3.71
4594 5831 4.278170 TGTTGTAAAAGCAACCTCATCAGG 59.722 41.667 6.50 0.00 45.80 3.86
4597 5834 5.181690 TGTGTTGTAAAAGCAACCTCATC 57.818 39.130 6.50 0.00 45.80 2.92
4601 5838 8.956533 ATAAATTTGTGTTGTAAAAGCAACCT 57.043 26.923 0.00 0.00 45.80 3.50
4602 5839 9.040939 AGATAAATTTGTGTTGTAAAAGCAACC 57.959 29.630 0.00 0.18 45.80 3.77
4617 5854 9.367160 CCCTAATTCACCCATAGATAAATTTGT 57.633 33.333 0.00 0.00 0.00 2.83
4634 5871 5.506730 TCCATGTGTACAACCCTAATTCA 57.493 39.130 0.00 0.00 0.00 2.57
4663 5900 2.524306 CAGTTTTACTTGGGGATGCCA 58.476 47.619 5.30 0.00 0.00 4.92
4668 5905 1.154430 AGGGCAGTTTTACTTGGGGA 58.846 50.000 0.00 0.00 0.00 4.81
4672 5909 1.327303 TGGCAGGGCAGTTTTACTTG 58.673 50.000 0.00 0.00 0.00 3.16
4673 5910 2.171003 GATGGCAGGGCAGTTTTACTT 58.829 47.619 1.13 0.00 0.00 2.24
4696 5933 5.959618 AACTTAACAGCCATCAGGTTTAC 57.040 39.130 0.00 0.00 37.19 2.01
4697 5934 6.322712 ACAAAACTTAACAGCCATCAGGTTTA 59.677 34.615 0.00 0.00 37.19 2.01
4704 5941 7.305763 CGTTAACAACAAAACTTAACAGCCATC 60.306 37.037 6.39 0.00 32.23 3.51
4705 5942 6.474102 CGTTAACAACAAAACTTAACAGCCAT 59.526 34.615 6.39 0.00 32.23 4.40
4706 5943 5.800941 CGTTAACAACAAAACTTAACAGCCA 59.199 36.000 6.39 0.00 32.23 4.75
4707 5944 5.276020 GCGTTAACAACAAAACTTAACAGCC 60.276 40.000 6.39 0.00 32.23 4.85
4708 5945 5.513849 AGCGTTAACAACAAAACTTAACAGC 59.486 36.000 6.39 0.00 34.17 4.40
4709 5946 6.020995 CCAGCGTTAACAACAAAACTTAACAG 60.021 38.462 6.39 0.00 32.23 3.16
4710 5947 5.800941 CCAGCGTTAACAACAAAACTTAACA 59.199 36.000 6.39 0.00 32.23 2.41
4711 5948 5.801444 ACCAGCGTTAACAACAAAACTTAAC 59.199 36.000 6.39 0.00 0.00 2.01
4712 5949 5.952033 ACCAGCGTTAACAACAAAACTTAA 58.048 33.333 6.39 0.00 0.00 1.85
4713 5950 5.564048 ACCAGCGTTAACAACAAAACTTA 57.436 34.783 6.39 0.00 0.00 2.24
4714 5951 4.443913 ACCAGCGTTAACAACAAAACTT 57.556 36.364 6.39 0.00 0.00 2.66
4715 5952 5.564048 TTACCAGCGTTAACAACAAAACT 57.436 34.783 6.39 0.00 0.00 2.66
4716 5953 5.972382 TGATTACCAGCGTTAACAACAAAAC 59.028 36.000 6.39 0.00 0.00 2.43
4717 5954 6.132791 TGATTACCAGCGTTAACAACAAAA 57.867 33.333 6.39 0.00 0.00 2.44
4718 5955 5.752892 TGATTACCAGCGTTAACAACAAA 57.247 34.783 6.39 0.00 0.00 2.83
4719 5956 5.950758 ATGATTACCAGCGTTAACAACAA 57.049 34.783 6.39 0.00 0.00 2.83
4720 5957 6.457663 GCATATGATTACCAGCGTTAACAACA 60.458 38.462 6.97 0.00 0.00 3.33
4721 5958 5.907391 GCATATGATTACCAGCGTTAACAAC 59.093 40.000 6.97 0.00 0.00 3.32
4722 5959 5.586643 TGCATATGATTACCAGCGTTAACAA 59.413 36.000 6.97 0.00 0.00 2.83
4723 5960 5.119694 TGCATATGATTACCAGCGTTAACA 58.880 37.500 6.97 0.00 0.00 2.41
4724 5961 5.666969 TGCATATGATTACCAGCGTTAAC 57.333 39.130 6.97 0.00 0.00 2.01
4725 5962 9.830975 ATATATGCATATGATTACCAGCGTTAA 57.169 29.630 26.21 3.62 0.00 2.01
4726 5963 9.260002 CATATATGCATATGATTACCAGCGTTA 57.740 33.333 26.21 4.24 44.70 3.18
4727 5964 7.770433 ACATATATGCATATGATTACCAGCGTT 59.230 33.333 26.21 1.08 44.70 4.84
4728 5965 7.275183 ACATATATGCATATGATTACCAGCGT 58.725 34.615 26.21 6.08 44.70 5.07
4729 5966 7.719778 ACATATATGCATATGATTACCAGCG 57.280 36.000 26.21 5.54 44.70 5.18
4737 5974 8.397906 GCGTTTGGTTACATATATGCATATGAT 58.602 33.333 26.21 14.73 44.70 2.45
4738 5975 7.606073 AGCGTTTGGTTACATATATGCATATGA 59.394 33.333 26.21 12.46 44.70 2.15
4739 5976 7.693536 CAGCGTTTGGTTACATATATGCATATG 59.306 37.037 26.21 17.04 46.48 1.78
4740 5977 7.148255 CCAGCGTTTGGTTACATATATGCATAT 60.148 37.037 22.31 22.31 42.41 1.78
4741 5978 6.148645 CCAGCGTTTGGTTACATATATGCATA 59.851 38.462 12.79 9.27 42.41 3.14
4742 5979 5.048782 CCAGCGTTTGGTTACATATATGCAT 60.049 40.000 12.79 3.79 42.41 3.96
4743 5980 4.274705 CCAGCGTTTGGTTACATATATGCA 59.725 41.667 12.79 0.00 42.41 3.96
4744 5981 4.320202 CCCAGCGTTTGGTTACATATATGC 60.320 45.833 12.79 0.00 46.25 3.14
4745 5982 4.819630 ACCCAGCGTTTGGTTACATATATG 59.180 41.667 11.29 11.29 46.25 1.78
4746 5983 4.819630 CACCCAGCGTTTGGTTACATATAT 59.180 41.667 0.00 0.00 46.25 0.86
4747 5984 4.193090 CACCCAGCGTTTGGTTACATATA 58.807 43.478 0.00 0.00 46.25 0.86
4748 5985 3.013921 CACCCAGCGTTTGGTTACATAT 58.986 45.455 0.00 0.00 46.25 1.78
4749 5986 2.428491 CACCCAGCGTTTGGTTACATA 58.572 47.619 0.00 0.00 46.25 2.29
4750 5987 1.243902 CACCCAGCGTTTGGTTACAT 58.756 50.000 0.00 0.00 46.25 2.29
4751 5988 1.448922 GCACCCAGCGTTTGGTTACA 61.449 55.000 0.00 0.00 46.25 2.41
4752 5989 1.284715 GCACCCAGCGTTTGGTTAC 59.715 57.895 0.00 0.00 46.25 2.50
4753 5990 3.752704 GCACCCAGCGTTTGGTTA 58.247 55.556 0.00 0.00 46.25 2.85
4769 6006 6.421801 GGTATTGTTATGGAGATGCAATTTGC 59.578 38.462 14.49 14.49 45.29 3.68
4770 6007 6.925165 GGGTATTGTTATGGAGATGCAATTTG 59.075 38.462 0.00 0.00 32.79 2.32
4771 6008 6.041979 GGGGTATTGTTATGGAGATGCAATTT 59.958 38.462 0.00 0.00 32.79 1.82
4772 6009 5.539955 GGGGTATTGTTATGGAGATGCAATT 59.460 40.000 0.00 0.00 32.79 2.32
4773 6010 5.079643 GGGGTATTGTTATGGAGATGCAAT 58.920 41.667 0.00 0.00 34.62 3.56
4774 6011 4.167892 AGGGGTATTGTTATGGAGATGCAA 59.832 41.667 0.00 0.00 0.00 4.08
4775 6012 3.721575 AGGGGTATTGTTATGGAGATGCA 59.278 43.478 0.00 0.00 0.00 3.96
4776 6013 4.373156 AGGGGTATTGTTATGGAGATGC 57.627 45.455 0.00 0.00 0.00 3.91
4777 6014 6.375455 GCATTAGGGGTATTGTTATGGAGATG 59.625 42.308 0.00 0.00 0.00 2.90
4778 6015 6.045459 TGCATTAGGGGTATTGTTATGGAGAT 59.955 38.462 0.00 0.00 0.00 2.75
4779 6016 5.371176 TGCATTAGGGGTATTGTTATGGAGA 59.629 40.000 0.00 0.00 0.00 3.71
4780 6017 5.630121 TGCATTAGGGGTATTGTTATGGAG 58.370 41.667 0.00 0.00 0.00 3.86
4781 6018 5.457487 CCTGCATTAGGGGTATTGTTATGGA 60.457 44.000 0.00 0.00 43.33 3.41
4782 6019 4.766891 CCTGCATTAGGGGTATTGTTATGG 59.233 45.833 0.00 0.00 43.33 2.74
4783 6020 5.964958 CCTGCATTAGGGGTATTGTTATG 57.035 43.478 0.00 0.00 43.33 1.90
4796 6033 2.756760 AGTGATTGGTTGCCTGCATTAG 59.243 45.455 0.00 0.00 0.00 1.73
4797 6034 2.806434 AGTGATTGGTTGCCTGCATTA 58.194 42.857 0.00 0.00 0.00 1.90
4798 6035 1.636148 AGTGATTGGTTGCCTGCATT 58.364 45.000 0.00 0.00 0.00 3.56
4799 6036 2.372264 CTAGTGATTGGTTGCCTGCAT 58.628 47.619 0.00 0.00 0.00 3.96
4800 6037 1.614051 CCTAGTGATTGGTTGCCTGCA 60.614 52.381 0.00 0.00 0.00 4.41
4801 6038 1.098050 CCTAGTGATTGGTTGCCTGC 58.902 55.000 0.00 0.00 0.00 4.85
4802 6039 2.290260 TGACCTAGTGATTGGTTGCCTG 60.290 50.000 0.00 0.00 36.59 4.85
4803 6040 1.985159 TGACCTAGTGATTGGTTGCCT 59.015 47.619 0.00 0.00 36.59 4.75
4804 6041 2.489938 TGACCTAGTGATTGGTTGCC 57.510 50.000 0.00 0.00 36.59 4.52
4805 6042 3.878778 AGATGACCTAGTGATTGGTTGC 58.121 45.455 0.00 0.00 36.59 4.17
4806 6043 5.043903 CGTAGATGACCTAGTGATTGGTTG 58.956 45.833 0.00 0.00 36.59 3.77
4807 6044 4.710375 ACGTAGATGACCTAGTGATTGGTT 59.290 41.667 0.00 0.00 36.59 3.67
4808 6045 4.279145 ACGTAGATGACCTAGTGATTGGT 58.721 43.478 0.00 0.00 39.60 3.67
4809 6046 4.920640 ACGTAGATGACCTAGTGATTGG 57.079 45.455 0.00 0.00 0.00 3.16
4810 6047 7.596749 AAAAACGTAGATGACCTAGTGATTG 57.403 36.000 0.00 0.00 0.00 2.67
4831 6068 4.837972 AGTAAGCAAAAACAGGGCAAAAA 58.162 34.783 0.00 0.00 0.00 1.94
4832 6069 4.479786 AGTAAGCAAAAACAGGGCAAAA 57.520 36.364 0.00 0.00 0.00 2.44
4833 6070 4.038642 CCTAGTAAGCAAAAACAGGGCAAA 59.961 41.667 0.00 0.00 0.00 3.68
4834 6071 3.572255 CCTAGTAAGCAAAAACAGGGCAA 59.428 43.478 0.00 0.00 0.00 4.52
4835 6072 3.153919 CCTAGTAAGCAAAAACAGGGCA 58.846 45.455 0.00 0.00 0.00 5.36
4836 6073 2.094700 GCCTAGTAAGCAAAAACAGGGC 60.095 50.000 0.00 0.00 0.00 5.19
4837 6074 2.492088 GGCCTAGTAAGCAAAAACAGGG 59.508 50.000 0.00 0.00 0.00 4.45
4838 6075 2.492088 GGGCCTAGTAAGCAAAAACAGG 59.508 50.000 0.84 0.00 0.00 4.00
4839 6076 3.421844 AGGGCCTAGTAAGCAAAAACAG 58.578 45.455 2.82 0.00 0.00 3.16
4840 6077 3.518992 AGGGCCTAGTAAGCAAAAACA 57.481 42.857 2.82 0.00 0.00 2.83
4841 6078 4.079970 AGAAGGGCCTAGTAAGCAAAAAC 58.920 43.478 6.41 0.00 0.00 2.43
4842 6079 4.202524 TGAGAAGGGCCTAGTAAGCAAAAA 60.203 41.667 6.41 0.00 0.00 1.94
4843 6080 3.329520 TGAGAAGGGCCTAGTAAGCAAAA 59.670 43.478 6.41 0.00 0.00 2.44
4844 6081 2.910319 TGAGAAGGGCCTAGTAAGCAAA 59.090 45.455 6.41 0.00 0.00 3.68
4845 6082 2.501723 CTGAGAAGGGCCTAGTAAGCAA 59.498 50.000 6.41 0.00 0.00 3.91
4846 6083 2.111384 CTGAGAAGGGCCTAGTAAGCA 58.889 52.381 6.41 0.00 0.00 3.91
4847 6084 1.202592 GCTGAGAAGGGCCTAGTAAGC 60.203 57.143 6.41 11.02 0.00 3.09
4848 6085 1.414550 GGCTGAGAAGGGCCTAGTAAG 59.585 57.143 6.41 4.01 44.48 2.34
4849 6086 1.497161 GGCTGAGAAGGGCCTAGTAA 58.503 55.000 6.41 0.00 44.48 2.24
4850 6087 3.225608 GGCTGAGAAGGGCCTAGTA 57.774 57.895 6.41 0.00 44.48 1.82
4851 6088 4.058434 GGCTGAGAAGGGCCTAGT 57.942 61.111 6.41 0.00 44.48 2.57
4856 6093 1.220477 GAGTCAGGCTGAGAAGGGC 59.780 63.158 19.38 4.82 0.00 5.19
4857 6094 1.254284 ACGAGTCAGGCTGAGAAGGG 61.254 60.000 19.38 8.32 0.00 3.95
4858 6095 0.605589 AACGAGTCAGGCTGAGAAGG 59.394 55.000 19.38 10.13 0.00 3.46
4859 6096 2.447244 AAACGAGTCAGGCTGAGAAG 57.553 50.000 19.38 13.89 0.00 2.85
4860 6097 2.910688 AAAACGAGTCAGGCTGAGAA 57.089 45.000 19.38 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.