Multiple sequence alignment - TraesCS4A01G246100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G246100 chr4A 100.000 6066 0 0 1 6066 556757416 556751351 0.000000e+00 11202.0
1 TraesCS4A01G246100 chr4A 78.899 763 87 35 1003 1722 528540849 528541580 3.330000e-122 449.0
2 TraesCS4A01G246100 chr4A 97.297 74 2 0 5906 5979 556751476 556751403 6.380000e-25 126.0
3 TraesCS4A01G246100 chr4A 97.297 74 2 0 5941 6014 556751511 556751438 6.380000e-25 126.0
4 TraesCS4A01G246100 chr4D 92.894 2688 120 28 596 3238 43299801 43302462 0.000000e+00 3840.0
5 TraesCS4A01G246100 chr4D 90.552 2519 124 45 3279 5714 43302834 43305321 0.000000e+00 3229.0
6 TraesCS4A01G246100 chr4D 95.625 480 18 3 2 480 43299295 43299772 0.000000e+00 767.0
7 TraesCS4A01G246100 chr4B 91.183 2552 119 42 3266 5734 62970014 62972542 0.000000e+00 3369.0
8 TraesCS4A01G246100 chr4B 90.482 2574 108 44 745 3240 62967113 62969627 0.000000e+00 3269.0
9 TraesCS4A01G246100 chr4B 86.400 125 8 7 450 570 626738941 626739060 1.770000e-25 128.0
10 TraesCS4A01G246100 chr7A 81.712 771 74 30 1003 1727 648928117 648928866 1.130000e-161 580.0
11 TraesCS4A01G246100 chr7A 96.970 33 0 1 5891 5922 620535796 620535764 3.000000e-03 54.7
12 TraesCS4A01G246100 chr6D 84.568 162 20 5 5740 5900 113589280 113589437 8.140000e-34 156.0
13 TraesCS4A01G246100 chr6D 78.571 224 24 10 5744 5945 107770214 107769993 6.380000e-25 126.0
14 TraesCS4A01G246100 chr6D 94.595 37 2 0 5907 5943 113589466 113589502 2.360000e-04 58.4
15 TraesCS4A01G246100 chr5B 85.235 149 17 5 5753 5900 682961003 682961147 1.360000e-31 148.0
16 TraesCS4A01G246100 chr5B 81.290 155 23 6 5749 5900 106964449 106964600 2.970000e-23 121.0
17 TraesCS4A01G246100 chr3A 97.674 86 2 0 485 570 651635696 651635611 1.360000e-31 148.0
18 TraesCS4A01G246100 chr2D 85.616 146 15 5 5753 5897 644674747 644674887 1.360000e-31 148.0
19 TraesCS4A01G246100 chr1B 96.591 88 3 0 484 571 416165078 416165165 4.900000e-31 147.0
20 TraesCS4A01G246100 chr2A 90.826 109 8 1 484 590 362443076 362443184 1.760000e-30 145.0
21 TraesCS4A01G246100 chr2A 87.288 118 12 2 455 571 159582143 159582028 1.370000e-26 132.0
22 TraesCS4A01G246100 chr2A 80.982 163 18 6 5746 5897 688403856 688404016 3.840000e-22 117.0
23 TraesCS4A01G246100 chr2A 84.884 86 13 0 5977 6062 688404038 688404123 3.010000e-13 87.9
24 TraesCS4A01G246100 chr1A 95.604 91 3 1 480 570 98249430 98249519 1.760000e-30 145.0
25 TraesCS4A01G246100 chr1A 93.617 94 6 0 485 578 547849088 547849181 2.280000e-29 141.0
26 TraesCS4A01G246100 chr1A 83.108 148 19 4 5755 5900 529262926 529262783 4.930000e-26 130.0
27 TraesCS4A01G246100 chr6B 94.624 93 4 1 478 570 354810236 354810327 6.340000e-30 143.0
28 TraesCS4A01G246100 chr3B 90.476 105 8 2 469 573 771179197 771179095 2.950000e-28 137.0
29 TraesCS4A01G246100 chr3B 79.024 205 27 8 5753 5943 694789210 694789412 6.380000e-25 126.0
30 TraesCS4A01G246100 chr2B 83.893 149 18 5 5755 5900 717040576 717040721 2.950000e-28 137.0
31 TraesCS4A01G246100 chr2B 81.935 155 19 8 5750 5900 653617115 653616966 8.260000e-24 122.0
32 TraesCS4A01G246100 chr1D 82.278 158 20 7 5749 5900 490372583 490372428 4.930000e-26 130.0
33 TraesCS4A01G246100 chr5A 78.462 195 21 9 5748 5921 357810738 357810544 2.310000e-19 108.0
34 TraesCS4A01G246100 chr3D 75.000 144 24 2 5790 5922 13414688 13414830 8.490000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G246100 chr4A 556751351 556757416 6065 True 11202 11202 100.000000 1 6066 1 chr4A.!!$R1 6065
1 TraesCS4A01G246100 chr4A 528540849 528541580 731 False 449 449 78.899000 1003 1722 1 chr4A.!!$F1 719
2 TraesCS4A01G246100 chr4D 43299295 43305321 6026 False 2612 3840 93.023667 2 5714 3 chr4D.!!$F1 5712
3 TraesCS4A01G246100 chr4B 62967113 62972542 5429 False 3319 3369 90.832500 745 5734 2 chr4B.!!$F2 4989
4 TraesCS4A01G246100 chr7A 648928117 648928866 749 False 580 580 81.712000 1003 1727 1 chr7A.!!$F1 724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 190 0.955428 TGCGATTTGGTGTCCTGCTC 60.955 55.000 0.00 0.00 0.00 4.26 F
1310 1356 0.391597 TCCCTGTCCGTTTGTCTGTC 59.608 55.000 0.00 0.00 0.00 3.51 F
1839 1933 0.611896 AGGCCTTCAATTTGGACCCG 60.612 55.000 0.00 0.00 29.76 5.28 F
2090 2188 0.963962 ATGCTCCACAGTTGGCAAAG 59.036 50.000 0.00 0.00 43.56 2.77 F
2379 2478 1.278238 GCGAGTTAACTGGATGACCG 58.722 55.000 20.43 12.94 39.42 4.79 F
3502 3989 1.284785 CAAGGGAAGGAGGTATTGCCA 59.715 52.381 0.00 0.00 40.37 4.92 F
4593 5121 1.133668 AGGCATCAGGATGGGTAAAGC 60.134 52.381 10.99 0.00 39.16 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1603 1695 0.763035 ACCCCTCGCTGTACTTGTTT 59.237 50.000 0.00 0.00 0.00 2.83 R
3110 3235 1.308998 CGGCACTTTTCTCCAACTGT 58.691 50.000 0.00 0.00 0.00 3.55 R
3657 4144 1.835927 GCAGACCTGGGAAGACAGCT 61.836 60.000 0.00 0.00 37.16 4.24 R
3711 4198 2.965147 CTGCTTAAGCGCAACGGCA 61.965 57.895 21.97 13.75 45.83 5.69 R
3925 4414 4.772100 AGGTCCAGTTTTCATGGGTAAATG 59.228 41.667 0.00 0.00 38.44 2.32 R
4662 5191 0.681243 GGGGGTTCCTGCAAGATCAC 60.681 60.000 0.00 0.00 34.07 3.06 R
5773 6352 0.029300 CGGCATATGAAGCGGGTTTG 59.971 55.000 6.97 0.00 0.00 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 5.997746 AGTATATAGGCGTGTGCATCATTTT 59.002 36.000 0.00 0.00 45.35 1.82
102 103 7.763985 CAGTTGTGGTTACATTTCCTTCTTTTT 59.236 33.333 0.00 0.00 36.53 1.94
151 152 5.418524 CCATTTGTTAGGTGATGGATGACAA 59.581 40.000 0.00 0.00 41.20 3.18
171 172 4.178540 CAATGCTGGTGCTATTTCCTTTG 58.821 43.478 0.00 0.00 40.48 2.77
189 190 0.955428 TGCGATTTGGTGTCCTGCTC 60.955 55.000 0.00 0.00 0.00 4.26
241 242 2.530151 TGCAACCTCTGGGCCTCT 60.530 61.111 4.53 0.00 35.63 3.69
242 243 2.045536 GCAACCTCTGGGCCTCTG 60.046 66.667 4.53 0.00 35.63 3.35
270 271 7.010923 GCACAAGATTTTGTTTGGTTCAATACA 59.989 33.333 0.00 0.00 45.01 2.29
271 272 8.877779 CACAAGATTTTGTTTGGTTCAATACAA 58.122 29.630 0.00 0.00 45.01 2.41
279 280 9.658799 TTTGTTTGGTTCAATACAATTTTCTCA 57.341 25.926 0.00 0.00 30.86 3.27
361 362 4.863131 GCTAACACACTCGCATAAACTAGT 59.137 41.667 0.00 0.00 0.00 2.57
390 392 2.282462 GGGATGCCCGGCTTATGG 60.282 66.667 11.61 0.00 32.13 2.74
462 464 4.624015 ACATGTTTTCTGTTTGCATGGAG 58.376 39.130 0.00 0.00 40.63 3.86
469 471 4.350368 TCTGTTTGCATGGAGTAGTTCA 57.650 40.909 0.00 0.00 0.00 3.18
480 482 8.264347 TGCATGGAGTAGTTCACTTCAATTATA 58.736 33.333 0.00 0.00 46.20 0.98
493 495 8.871125 TCACTTCAATTATAATCTACTCCCTCC 58.129 37.037 0.00 0.00 0.00 4.30
494 496 7.815068 CACTTCAATTATAATCTACTCCCTCCG 59.185 40.741 0.00 0.00 0.00 4.63
496 498 7.850935 TCAATTATAATCTACTCCCTCCGTT 57.149 36.000 0.00 0.00 0.00 4.44
497 499 7.893658 TCAATTATAATCTACTCCCTCCGTTC 58.106 38.462 0.00 0.00 0.00 3.95
498 500 6.854091 ATTATAATCTACTCCCTCCGTTCC 57.146 41.667 0.00 0.00 0.00 3.62
500 502 2.544844 ATCTACTCCCTCCGTTCCAA 57.455 50.000 0.00 0.00 0.00 3.53
503 505 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
505 507 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
506 508 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
507 509 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
508 510 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
509 511 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
510 512 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
511 513 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
512 514 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
513 515 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
514 516 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
515 517 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
516 518 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
517 519 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
518 520 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
519 521 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
561 563 9.880157 AAAGTTGAATCATCTATTTTGGAATGG 57.120 29.630 0.00 0.00 0.00 3.16
562 564 8.827832 AGTTGAATCATCTATTTTGGAATGGA 57.172 30.769 0.00 0.00 37.20 3.41
563 565 8.910944 AGTTGAATCATCTATTTTGGAATGGAG 58.089 33.333 0.00 0.00 36.39 3.86
564 566 7.828508 TGAATCATCTATTTTGGAATGGAGG 57.171 36.000 0.00 0.00 36.39 4.30
565 567 6.779049 TGAATCATCTATTTTGGAATGGAGGG 59.221 38.462 0.00 0.00 36.39 4.30
566 568 5.992564 TCATCTATTTTGGAATGGAGGGA 57.007 39.130 0.00 0.00 36.39 4.20
567 569 5.945310 TCATCTATTTTGGAATGGAGGGAG 58.055 41.667 0.00 0.00 36.39 4.30
568 570 5.433051 TCATCTATTTTGGAATGGAGGGAGT 59.567 40.000 0.00 0.00 36.39 3.85
569 571 6.619437 TCATCTATTTTGGAATGGAGGGAGTA 59.381 38.462 0.00 0.00 36.39 2.59
570 572 6.500589 TCTATTTTGGAATGGAGGGAGTAG 57.499 41.667 0.00 0.00 30.37 2.57
571 573 3.366052 TTTTGGAATGGAGGGAGTAGC 57.634 47.619 0.00 0.00 0.00 3.58
572 574 1.965414 TTGGAATGGAGGGAGTAGCA 58.035 50.000 0.00 0.00 0.00 3.49
573 575 1.965414 TGGAATGGAGGGAGTAGCAA 58.035 50.000 0.00 0.00 0.00 3.91
574 576 2.274542 TGGAATGGAGGGAGTAGCAAA 58.725 47.619 0.00 0.00 0.00 3.68
575 577 2.647299 TGGAATGGAGGGAGTAGCAAAA 59.353 45.455 0.00 0.00 0.00 2.44
576 578 3.075283 TGGAATGGAGGGAGTAGCAAAAA 59.925 43.478 0.00 0.00 0.00 1.94
577 579 3.696548 GGAATGGAGGGAGTAGCAAAAAG 59.303 47.826 0.00 0.00 0.00 2.27
578 580 2.879103 TGGAGGGAGTAGCAAAAAGG 57.121 50.000 0.00 0.00 0.00 3.11
579 581 1.271926 TGGAGGGAGTAGCAAAAAGGC 60.272 52.381 0.00 0.00 0.00 4.35
580 582 1.271926 GGAGGGAGTAGCAAAAAGGCA 60.272 52.381 0.00 0.00 35.83 4.75
581 583 2.514803 GAGGGAGTAGCAAAAAGGCAA 58.485 47.619 0.00 0.00 35.83 4.52
582 584 2.890945 GAGGGAGTAGCAAAAAGGCAAA 59.109 45.455 0.00 0.00 35.83 3.68
583 585 3.304829 AGGGAGTAGCAAAAAGGCAAAA 58.695 40.909 0.00 0.00 35.83 2.44
584 586 3.069586 AGGGAGTAGCAAAAAGGCAAAAC 59.930 43.478 0.00 0.00 35.83 2.43
585 587 3.049912 GGAGTAGCAAAAAGGCAAAACG 58.950 45.455 0.00 0.00 35.83 3.60
586 588 2.469826 AGTAGCAAAAAGGCAAAACGC 58.530 42.857 0.00 0.00 41.28 4.84
587 589 2.159170 AGTAGCAAAAAGGCAAAACGCA 60.159 40.909 0.00 0.00 45.17 5.24
588 590 1.731720 AGCAAAAAGGCAAAACGCAA 58.268 40.000 0.00 0.00 45.17 4.85
589 591 2.079925 AGCAAAAAGGCAAAACGCAAA 58.920 38.095 0.00 0.00 45.17 3.68
590 592 2.485814 AGCAAAAAGGCAAAACGCAAAA 59.514 36.364 0.00 0.00 45.17 2.44
591 593 3.128415 AGCAAAAAGGCAAAACGCAAAAT 59.872 34.783 0.00 0.00 45.17 1.82
592 594 3.240171 GCAAAAAGGCAAAACGCAAAATG 59.760 39.130 0.00 0.00 45.17 2.32
593 595 4.656041 CAAAAAGGCAAAACGCAAAATGA 58.344 34.783 0.00 0.00 45.17 2.57
594 596 4.954092 AAAAGGCAAAACGCAAAATGAA 57.046 31.818 0.00 0.00 45.17 2.57
626 628 1.897560 AGTGCAGGCTAAGTTCCAAC 58.102 50.000 0.00 0.00 0.00 3.77
636 638 3.063588 GCTAAGTTCCAACGATAACCAGC 59.936 47.826 0.00 0.00 31.26 4.85
646 648 8.149973 TCCAACGATAACCAGCTAAATTAATC 57.850 34.615 0.00 0.00 0.00 1.75
647 649 7.990886 TCCAACGATAACCAGCTAAATTAATCT 59.009 33.333 0.00 0.00 0.00 2.40
653 655 8.752005 ATAACCAGCTAAATTAATCTCTTGCA 57.248 30.769 0.00 0.00 0.00 4.08
697 699 9.853177 AGGTAACCAGATAAAATCCTATTGAAG 57.147 33.333 0.00 0.00 37.17 3.02
706 708 9.408648 GATAAAATCCTATTGAAGTCCCTGAAA 57.591 33.333 0.00 0.00 0.00 2.69
710 712 5.805728 TCCTATTGAAGTCCCTGAAAGAAC 58.194 41.667 0.00 0.00 34.07 3.01
711 713 5.548056 TCCTATTGAAGTCCCTGAAAGAACT 59.452 40.000 0.00 0.00 34.07 3.01
712 714 6.044404 TCCTATTGAAGTCCCTGAAAGAACTT 59.956 38.462 0.00 0.00 34.07 2.66
715 717 6.850752 TTGAAGTCCCTGAAAGAACTTTTT 57.149 33.333 1.33 0.00 34.07 1.94
803 806 4.662278 TCTGAAACCGAGGGAAAATGAAT 58.338 39.130 0.00 0.00 0.00 2.57
804 807 4.458989 TCTGAAACCGAGGGAAAATGAATG 59.541 41.667 0.00 0.00 0.00 2.67
807 810 5.048083 TGAAACCGAGGGAAAATGAATGAAG 60.048 40.000 0.00 0.00 0.00 3.02
808 811 3.356290 ACCGAGGGAAAATGAATGAAGG 58.644 45.455 0.00 0.00 0.00 3.46
839 849 2.155197 ATTGAGGGGTTGGTGAGGGC 62.155 60.000 0.00 0.00 0.00 5.19
885 895 3.138798 GCCCACATCTGCTGCCTG 61.139 66.667 0.00 0.00 0.00 4.85
971 981 2.716017 CGAGAGGAGGAGCACCACC 61.716 68.421 8.61 8.61 45.32 4.61
1201 1223 5.467035 AACAATCACGGTCATCCATTTTT 57.533 34.783 0.00 0.00 0.00 1.94
1310 1356 0.391597 TCCCTGTCCGTTTGTCTGTC 59.608 55.000 0.00 0.00 0.00 3.51
1512 1604 1.739466 ACATTTGCTGAATCGCGTCAT 59.261 42.857 5.77 0.00 0.00 3.06
1603 1695 1.904771 GGTGGGATCCGTCATGACA 59.095 57.895 24.93 7.51 0.00 3.58
1657 1749 4.943705 AGATACTACGGTGGAAACGAGTAA 59.056 41.667 0.00 0.00 32.31 2.24
1659 1751 2.229784 ACTACGGTGGAAACGAGTAAGG 59.770 50.000 0.00 0.00 34.93 2.69
1662 1754 0.675837 GGTGGAAACGAGTAAGGCCC 60.676 60.000 0.00 0.00 0.00 5.80
1674 1766 1.065345 GTAAGGCCCTGTTCCTTCCTC 60.065 57.143 0.00 0.00 42.57 3.71
1681 1773 1.277557 CCTGTTCCTTCCTCCTCTGTG 59.722 57.143 0.00 0.00 0.00 3.66
1737 1831 4.557899 ATGGATGTGGGGGTCAATAATT 57.442 40.909 0.00 0.00 0.00 1.40
1746 1840 4.093743 GGGGGTCAATAATTTGAACTGGT 58.906 43.478 3.98 0.00 46.76 4.00
1747 1841 4.081697 GGGGGTCAATAATTTGAACTGGTG 60.082 45.833 3.98 0.00 46.76 4.17
1748 1842 4.526650 GGGGTCAATAATTTGAACTGGTGT 59.473 41.667 3.98 0.00 46.76 4.16
1761 1855 2.070654 CTGGTGTGGTCGTTTTGGCC 62.071 60.000 0.00 0.00 0.00 5.36
1839 1933 0.611896 AGGCCTTCAATTTGGACCCG 60.612 55.000 0.00 0.00 29.76 5.28
1864 1958 3.087370 AGTGGGGAGGTAAAATCTTGC 57.913 47.619 0.00 0.00 0.00 4.01
1881 1975 8.767478 AAATCTTGCTGATGGTTTTATTCTTG 57.233 30.769 0.00 0.00 35.21 3.02
1886 1980 9.211485 CTTGCTGATGGTTTTATTCTTGATTTT 57.789 29.630 0.00 0.00 0.00 1.82
1929 2027 4.023450 TCCGGTATAACTAATGACTCTGCG 60.023 45.833 0.00 0.00 0.00 5.18
1952 2050 8.617809 TGCGGGATGTTTTTCTATAAATTCTAC 58.382 33.333 0.00 0.00 0.00 2.59
1953 2051 7.797123 GCGGGATGTTTTTCTATAAATTCTACG 59.203 37.037 0.00 0.00 0.00 3.51
1954 2052 8.280497 CGGGATGTTTTTCTATAAATTCTACGG 58.720 37.037 0.00 0.00 0.00 4.02
2090 2188 0.963962 ATGCTCCACAGTTGGCAAAG 59.036 50.000 0.00 0.00 43.56 2.77
2157 2255 4.050553 CGTAAAGTAAACGGGTCAAGTCA 58.949 43.478 0.00 0.00 36.71 3.41
2317 2416 4.736126 ATTTAGGTTGCATTGCTAACCC 57.264 40.909 25.88 12.92 45.88 4.11
2379 2478 1.278238 GCGAGTTAACTGGATGACCG 58.722 55.000 20.43 12.94 39.42 4.79
2745 2844 7.549134 TGTTTACATATGATGCTCGAGAAACTT 59.451 33.333 18.75 5.38 0.00 2.66
2747 2846 5.911752 ACATATGATGCTCGAGAAACTTCT 58.088 37.500 18.75 0.00 41.00 2.85
2882 2981 5.497464 TTGATTATGACCAGGTGAACTCA 57.503 39.130 0.00 0.00 0.00 3.41
2916 3015 6.267242 TCATTTCATGTCATGGAAGTTTTGGA 59.733 34.615 12.14 1.24 29.75 3.53
2917 3016 6.669125 TTTCATGTCATGGAAGTTTTGGAT 57.331 33.333 12.90 0.00 0.00 3.41
2918 3017 5.902613 TCATGTCATGGAAGTTTTGGATC 57.097 39.130 12.90 0.00 0.00 3.36
2919 3018 5.573219 TCATGTCATGGAAGTTTTGGATCT 58.427 37.500 12.90 0.00 0.00 2.75
2920 3019 6.720309 TCATGTCATGGAAGTTTTGGATCTA 58.280 36.000 12.90 0.00 0.00 1.98
2928 3028 5.183228 GGAAGTTTTGGATCTACCGATCAA 58.817 41.667 4.89 0.00 46.36 2.57
2963 3063 1.674359 TGCATGTTTCGTGAAGTGGT 58.326 45.000 0.00 0.00 0.00 4.16
2964 3064 2.020720 TGCATGTTTCGTGAAGTGGTT 58.979 42.857 0.00 0.00 0.00 3.67
2965 3065 2.425312 TGCATGTTTCGTGAAGTGGTTT 59.575 40.909 0.00 0.00 0.00 3.27
2966 3066 3.042887 GCATGTTTCGTGAAGTGGTTTC 58.957 45.455 0.00 0.00 36.29 2.78
2967 3067 3.243068 GCATGTTTCGTGAAGTGGTTTCT 60.243 43.478 0.00 0.00 36.71 2.52
2968 3068 4.733523 GCATGTTTCGTGAAGTGGTTTCTT 60.734 41.667 0.00 0.00 36.71 2.52
2969 3069 5.504994 GCATGTTTCGTGAAGTGGTTTCTTA 60.505 40.000 0.00 0.00 36.71 2.10
2970 3070 5.473796 TGTTTCGTGAAGTGGTTTCTTAC 57.526 39.130 0.00 0.00 36.71 2.34
3109 3234 5.352569 GCTAAGCTTCATTTGCTACTTCTGA 59.647 40.000 0.00 0.00 40.22 3.27
3110 3235 6.128172 GCTAAGCTTCATTTGCTACTTCTGAA 60.128 38.462 0.00 0.00 40.22 3.02
3227 3352 5.192327 AGGCAAGTTCATTTTCTTCAGTG 57.808 39.130 0.00 0.00 0.00 3.66
3244 3369 4.644103 CAGTGATGAACAATGAATCCCC 57.356 45.455 0.00 0.00 45.82 4.81
3245 3370 3.382546 CAGTGATGAACAATGAATCCCCC 59.617 47.826 0.00 0.00 45.82 5.40
3502 3989 1.284785 CAAGGGAAGGAGGTATTGCCA 59.715 52.381 0.00 0.00 40.37 4.92
3511 3998 6.466470 GGAAGGAGGTATTGCCAGAGAAATAT 60.466 42.308 0.00 0.00 40.61 1.28
3553 4040 7.308229 GCATAGAGTGTTGAAGATGTTTGTTCT 60.308 37.037 0.00 0.00 0.00 3.01
3711 4198 6.240176 CCCATAACCATACTATTACTGGCCTT 60.240 42.308 3.32 0.00 33.12 4.35
3817 4306 5.068460 TGTGTAATTAATGCCCTAATGTGCC 59.932 40.000 0.00 0.00 0.00 5.01
3925 4414 8.865590 TTTTGTGGTTAGAATTTGCTAGAAAC 57.134 30.769 0.00 0.00 0.00 2.78
3935 4424 8.366359 AGAATTTGCTAGAAACATTTACCCAT 57.634 30.769 0.00 0.00 0.00 4.00
3966 4455 4.279671 GGACCTATGATACCTGTCAGTCAG 59.720 50.000 0.00 0.00 43.27 3.51
4066 4555 3.011818 TGTCTCATGCCAGCATTAAGTG 58.988 45.455 1.47 0.00 33.90 3.16
4067 4556 2.357009 GTCTCATGCCAGCATTAAGTGG 59.643 50.000 1.47 0.00 33.90 4.00
4077 4566 3.379372 CAGCATTAAGTGGCAGCTTGTAT 59.621 43.478 11.08 4.14 32.35 2.29
4107 4596 9.995003 TTACTTCAAATTGCTTTGTTGGAATAT 57.005 25.926 0.00 0.00 42.02 1.28
4112 4610 7.599621 TCAAATTGCTTTGTTGGAATATGAGTG 59.400 33.333 0.00 0.00 42.02 3.51
4120 4618 6.239217 TGTTGGAATATGAGTGCTGAGTAT 57.761 37.500 0.00 0.00 0.00 2.12
4298 4822 6.490381 GGTGAACCTCAAGAAAAAGGTAAGAT 59.510 38.462 0.00 0.00 45.21 2.40
4303 4827 9.945904 AACCTCAAGAAAAAGGTAAGATAGTAG 57.054 33.333 0.00 0.00 45.21 2.57
4444 4972 8.255111 TCAGAATATTATGTCATGTCAGGACT 57.745 34.615 17.77 6.94 36.26 3.85
4453 4981 6.154203 TGTCATGTCAGGACTCTTATCATC 57.846 41.667 17.77 0.00 36.26 2.92
4492 5020 4.583489 GTCTAGGGAATAGATGGTTCACGA 59.417 45.833 0.00 0.00 42.50 4.35
4540 5068 3.523606 ATTGCAGCAAACAAGAACACA 57.476 38.095 12.97 0.00 0.00 3.72
4592 5120 2.487986 GGAGGCATCAGGATGGGTAAAG 60.488 54.545 10.99 0.00 39.16 1.85
4593 5121 1.133668 AGGCATCAGGATGGGTAAAGC 60.134 52.381 10.99 0.00 39.16 3.51
4594 5122 1.410083 GGCATCAGGATGGGTAAAGCA 60.410 52.381 10.99 0.00 39.16 3.91
4595 5123 2.590821 GCATCAGGATGGGTAAAGCAT 58.409 47.619 10.99 0.00 39.16 3.79
4596 5124 2.295349 GCATCAGGATGGGTAAAGCATG 59.705 50.000 10.99 0.00 39.16 4.06
4597 5125 2.057137 TCAGGATGGGTAAAGCATGC 57.943 50.000 10.51 10.51 36.16 4.06
4598 5126 1.284491 TCAGGATGGGTAAAGCATGCA 59.716 47.619 21.98 0.00 36.16 3.96
4599 5127 1.406539 CAGGATGGGTAAAGCATGCAC 59.593 52.381 21.98 9.42 0.00 4.57
4613 5142 5.700722 AGCATGCACTCATATAATGGTTG 57.299 39.130 21.98 0.00 0.00 3.77
4617 5146 6.238842 GCATGCACTCATATAATGGTTGTTCT 60.239 38.462 14.21 0.00 0.00 3.01
4662 5191 3.504863 CAAAATCTGATTGCCTGTTCCG 58.495 45.455 3.22 0.00 0.00 4.30
4670 5199 1.522668 TTGCCTGTTCCGTGATCTTG 58.477 50.000 0.00 0.00 0.00 3.02
4671 5200 0.955428 TGCCTGTTCCGTGATCTTGC 60.955 55.000 0.00 0.00 0.00 4.01
4729 5258 2.626780 GGACTTCGCCAAGGTTGCC 61.627 63.158 0.00 0.00 33.37 4.52
4759 5288 0.250901 ATTCGGCAGTGAACTTGGCT 60.251 50.000 0.00 0.00 0.00 4.75
4796 5325 2.611292 GCAGCAGCAGGTATTAGAAGTG 59.389 50.000 0.00 0.00 41.58 3.16
4806 5335 9.422681 AGCAGGTATTAGAAGTGATAGAACTTA 57.577 33.333 0.00 0.00 40.48 2.24
4828 5359 8.443937 ACTTATTCGAACTATTTTCTGTTGCTC 58.556 33.333 0.00 0.00 0.00 4.26
4833 5364 5.163913 CGAACTATTTTCTGTTGCTCTCCAG 60.164 44.000 0.00 0.00 0.00 3.86
4835 5366 5.486526 ACTATTTTCTGTTGCTCTCCAGAG 58.513 41.667 0.00 0.00 44.75 3.35
4838 5369 1.261480 TCTGTTGCTCTCCAGAGTCC 58.739 55.000 5.49 0.00 43.85 3.85
4839 5370 0.972134 CTGTTGCTCTCCAGAGTCCA 59.028 55.000 5.49 0.00 43.85 4.02
4840 5371 0.972134 TGTTGCTCTCCAGAGTCCAG 59.028 55.000 5.49 0.00 43.85 3.86
4841 5372 1.261480 GTTGCTCTCCAGAGTCCAGA 58.739 55.000 5.49 0.00 43.85 3.86
4842 5373 1.620819 GTTGCTCTCCAGAGTCCAGAA 59.379 52.381 5.49 0.00 43.85 3.02
4843 5374 1.261480 TGCTCTCCAGAGTCCAGAAC 58.739 55.000 5.49 0.00 43.85 3.01
4845 5376 1.930251 CTCTCCAGAGTCCAGAACCA 58.070 55.000 0.00 0.00 37.40 3.67
4846 5377 1.548269 CTCTCCAGAGTCCAGAACCAC 59.452 57.143 0.00 0.00 37.40 4.16
4847 5378 1.133167 TCTCCAGAGTCCAGAACCACA 60.133 52.381 0.00 0.00 0.00 4.17
4848 5379 1.905215 CTCCAGAGTCCAGAACCACAT 59.095 52.381 0.00 0.00 0.00 3.21
4850 5381 2.303022 TCCAGAGTCCAGAACCACATTC 59.697 50.000 0.00 0.00 37.62 2.67
4851 5382 2.616510 CCAGAGTCCAGAACCACATTCC 60.617 54.545 0.00 0.00 38.16 3.01
4853 5384 2.982488 AGAGTCCAGAACCACATTCCTT 59.018 45.455 0.00 0.00 38.16 3.36
4854 5385 3.077359 GAGTCCAGAACCACATTCCTTG 58.923 50.000 0.00 0.00 38.16 3.61
4872 5403 3.433173 CCTTGTGTATGCCCTTACCTACC 60.433 52.174 0.00 0.00 0.00 3.18
4936 5469 4.353383 AGGTACCAAACTGAAGGACTTC 57.647 45.455 15.94 5.14 39.91 3.01
5116 5650 4.949856 TGCCCTCAGAAACAAATTATCTCC 59.050 41.667 0.00 0.00 0.00 3.71
5117 5651 5.196695 GCCCTCAGAAACAAATTATCTCCT 58.803 41.667 0.00 0.00 0.00 3.69
5118 5652 5.654209 GCCCTCAGAAACAAATTATCTCCTT 59.346 40.000 0.00 0.00 0.00 3.36
5189 5732 2.637165 AGGAATCCCCTTGACTGTCTT 58.363 47.619 9.51 0.00 44.85 3.01
5247 5790 1.825090 TGCACCAAGCTTACATCTGG 58.175 50.000 0.00 0.00 45.94 3.86
5285 5830 1.066143 CATCACCCGTACCTCTTTGCT 60.066 52.381 0.00 0.00 0.00 3.91
5344 5922 1.032014 GAAGCAACCAGGAAGCACAA 58.968 50.000 9.95 0.00 0.00 3.33
5350 5929 0.839946 ACCAGGAAGCACAACTGAGT 59.160 50.000 0.00 0.00 34.21 3.41
5374 5953 9.383519 AGTACAAGTCCATGTAAACAATAGATG 57.616 33.333 0.00 0.00 37.52 2.90
5439 6018 8.698973 TTTTACAGAATATGGGAACTTTGTCA 57.301 30.769 0.00 0.00 0.00 3.58
5548 6127 0.379669 CGCATTTCTCCATGTGCTCC 59.620 55.000 2.72 0.00 35.52 4.70
5550 6129 1.742761 CATTTCTCCATGTGCTCCGT 58.257 50.000 0.00 0.00 0.00 4.69
5551 6130 2.086869 CATTTCTCCATGTGCTCCGTT 58.913 47.619 0.00 0.00 0.00 4.44
5561 6140 1.070914 TGTGCTCCGTTGGATAACACA 59.929 47.619 10.59 10.59 37.48 3.72
5608 6187 1.471676 GGTTCGTGAGCTCATGTAGGG 60.472 57.143 30.22 12.21 34.59 3.53
5657 6236 1.314730 AATTGTGTCCCAACCACGAC 58.685 50.000 0.00 0.00 35.44 4.34
5660 6239 1.301479 GTGTCCCAACCACGACTCC 60.301 63.158 0.00 0.00 0.00 3.85
5661 6240 1.762858 TGTCCCAACCACGACTCCA 60.763 57.895 0.00 0.00 0.00 3.86
5672 6251 1.956170 CGACTCCACAAGCGCTGTT 60.956 57.895 12.58 0.00 35.47 3.16
5721 6300 0.996727 GTGTTCAATGCGCCGTTGAC 60.997 55.000 20.64 16.36 38.82 3.18
5730 6309 2.956987 GCCGTTGACAATGCAGCT 59.043 55.556 1.56 0.00 0.00 4.24
5734 6313 1.739466 CCGTTGACAATGCAGCTATGT 59.261 47.619 1.56 3.62 0.00 2.29
5735 6314 2.935849 CCGTTGACAATGCAGCTATGTA 59.064 45.455 1.56 0.00 0.00 2.29
5736 6315 3.373748 CCGTTGACAATGCAGCTATGTAA 59.626 43.478 1.56 0.00 0.00 2.41
5737 6316 4.035558 CCGTTGACAATGCAGCTATGTAAT 59.964 41.667 1.56 0.00 0.00 1.89
5738 6317 5.200454 CGTTGACAATGCAGCTATGTAATC 58.800 41.667 3.94 0.00 0.00 1.75
5739 6318 5.514279 GTTGACAATGCAGCTATGTAATCC 58.486 41.667 3.94 0.00 0.00 3.01
5740 6319 5.039920 TGACAATGCAGCTATGTAATCCT 57.960 39.130 3.94 0.00 0.00 3.24
5741 6320 6.173427 TGACAATGCAGCTATGTAATCCTA 57.827 37.500 3.94 0.00 0.00 2.94
5742 6321 6.226052 TGACAATGCAGCTATGTAATCCTAG 58.774 40.000 3.94 0.00 0.00 3.02
5743 6322 5.555017 ACAATGCAGCTATGTAATCCTAGG 58.445 41.667 0.82 0.82 0.00 3.02
5744 6323 5.072329 ACAATGCAGCTATGTAATCCTAGGT 59.928 40.000 9.08 0.00 0.00 3.08
5745 6324 4.607293 TGCAGCTATGTAATCCTAGGTG 57.393 45.455 9.08 4.80 43.16 4.00
5747 6326 3.579709 CAGCTATGTAATCCTAGGTGCG 58.420 50.000 9.08 0.00 36.86 5.34
5748 6327 3.005897 CAGCTATGTAATCCTAGGTGCGT 59.994 47.826 9.08 0.00 36.86 5.24
5749 6328 4.217767 CAGCTATGTAATCCTAGGTGCGTA 59.782 45.833 9.08 0.00 36.86 4.42
5750 6329 4.831155 AGCTATGTAATCCTAGGTGCGTAA 59.169 41.667 9.08 0.00 0.00 3.18
5751 6330 5.303589 AGCTATGTAATCCTAGGTGCGTAAA 59.696 40.000 9.08 0.00 0.00 2.01
5752 6331 5.987347 GCTATGTAATCCTAGGTGCGTAAAA 59.013 40.000 9.08 0.00 0.00 1.52
5753 6332 6.145696 GCTATGTAATCCTAGGTGCGTAAAAG 59.854 42.308 9.08 0.76 0.00 2.27
5754 6333 4.186159 TGTAATCCTAGGTGCGTAAAAGC 58.814 43.478 9.08 0.00 37.71 3.51
5755 6334 3.343941 AATCCTAGGTGCGTAAAAGCA 57.656 42.857 9.08 0.00 45.96 3.91
5765 6344 2.413796 TGCGTAAAAGCATCTACAACCG 59.586 45.455 0.00 0.00 42.92 4.44
5766 6345 2.222953 GCGTAAAAGCATCTACAACCGG 60.223 50.000 0.00 0.00 37.05 5.28
5767 6346 3.255725 CGTAAAAGCATCTACAACCGGA 58.744 45.455 9.46 0.00 0.00 5.14
5768 6347 3.061697 CGTAAAAGCATCTACAACCGGAC 59.938 47.826 9.46 0.00 0.00 4.79
5769 6348 2.109425 AAAGCATCTACAACCGGACC 57.891 50.000 9.46 0.00 0.00 4.46
5770 6349 1.276622 AAGCATCTACAACCGGACCT 58.723 50.000 9.46 0.00 0.00 3.85
5771 6350 0.824759 AGCATCTACAACCGGACCTC 59.175 55.000 9.46 0.00 0.00 3.85
5772 6351 0.824759 GCATCTACAACCGGACCTCT 59.175 55.000 9.46 0.00 0.00 3.69
5773 6352 1.202428 GCATCTACAACCGGACCTCTC 60.202 57.143 9.46 0.00 0.00 3.20
5774 6353 2.100197 CATCTACAACCGGACCTCTCA 58.900 52.381 9.46 0.00 0.00 3.27
5775 6354 2.297698 TCTACAACCGGACCTCTCAA 57.702 50.000 9.46 0.00 0.00 3.02
5776 6355 2.600790 TCTACAACCGGACCTCTCAAA 58.399 47.619 9.46 0.00 0.00 2.69
5777 6356 2.298163 TCTACAACCGGACCTCTCAAAC 59.702 50.000 9.46 0.00 0.00 2.93
5778 6357 0.108019 ACAACCGGACCTCTCAAACC 59.892 55.000 9.46 0.00 0.00 3.27
5779 6358 0.605589 CAACCGGACCTCTCAAACCC 60.606 60.000 9.46 0.00 0.00 4.11
5780 6359 2.108278 AACCGGACCTCTCAAACCCG 62.108 60.000 9.46 0.00 39.85 5.28
5781 6360 2.434359 CGGACCTCTCAAACCCGC 60.434 66.667 0.00 0.00 33.47 6.13
5782 6361 2.943978 CGGACCTCTCAAACCCGCT 61.944 63.158 0.00 0.00 33.47 5.52
5783 6362 1.375326 GGACCTCTCAAACCCGCTT 59.625 57.895 0.00 0.00 0.00 4.68
5784 6363 0.673956 GGACCTCTCAAACCCGCTTC 60.674 60.000 0.00 0.00 0.00 3.86
5785 6364 0.034896 GACCTCTCAAACCCGCTTCA 59.965 55.000 0.00 0.00 0.00 3.02
5786 6365 0.693049 ACCTCTCAAACCCGCTTCAT 59.307 50.000 0.00 0.00 0.00 2.57
5787 6366 1.906574 ACCTCTCAAACCCGCTTCATA 59.093 47.619 0.00 0.00 0.00 2.15
5788 6367 2.505819 ACCTCTCAAACCCGCTTCATAT 59.494 45.455 0.00 0.00 0.00 1.78
5789 6368 2.874701 CCTCTCAAACCCGCTTCATATG 59.125 50.000 0.00 0.00 0.00 1.78
5790 6369 2.288666 TCTCAAACCCGCTTCATATGC 58.711 47.619 0.00 0.00 0.00 3.14
5791 6370 1.334869 CTCAAACCCGCTTCATATGCC 59.665 52.381 0.00 0.00 0.00 4.40
5792 6371 0.029300 CAAACCCGCTTCATATGCCG 59.971 55.000 0.00 0.78 0.00 5.69
5793 6372 0.107410 AAACCCGCTTCATATGCCGA 60.107 50.000 0.00 0.00 0.00 5.54
5794 6373 0.814010 AACCCGCTTCATATGCCGAC 60.814 55.000 0.00 0.00 0.00 4.79
5795 6374 1.961277 CCCGCTTCATATGCCGACC 60.961 63.158 0.00 0.00 0.00 4.79
5796 6375 2.310233 CCGCTTCATATGCCGACCG 61.310 63.158 0.00 0.00 0.00 4.79
5797 6376 2.310233 CGCTTCATATGCCGACCGG 61.310 63.158 0.00 0.00 38.57 5.28
5798 6377 1.227556 GCTTCATATGCCGACCGGT 60.228 57.895 6.92 6.92 37.65 5.28
5799 6378 1.222115 GCTTCATATGCCGACCGGTC 61.222 60.000 25.28 25.28 37.65 4.79
5800 6379 0.104120 CTTCATATGCCGACCGGTCA 59.896 55.000 32.80 16.16 37.65 4.02
5801 6380 0.179094 TTCATATGCCGACCGGTCAC 60.179 55.000 32.80 24.04 37.65 3.67
5802 6381 1.040893 TCATATGCCGACCGGTCACT 61.041 55.000 32.80 16.38 37.65 3.41
5803 6382 0.875908 CATATGCCGACCGGTCACTG 60.876 60.000 32.80 21.12 37.65 3.66
5804 6383 2.644555 ATATGCCGACCGGTCACTGC 62.645 60.000 32.80 28.77 37.65 4.40
5812 6391 4.082523 CGGTCACTGCCCGGTCAT 62.083 66.667 0.00 0.00 41.78 3.06
5813 6392 2.436646 GGTCACTGCCCGGTCATG 60.437 66.667 0.00 0.00 0.00 3.07
5814 6393 2.662596 GTCACTGCCCGGTCATGA 59.337 61.111 0.00 0.00 0.00 3.07
5815 6394 1.221840 GTCACTGCCCGGTCATGAT 59.778 57.895 0.00 0.00 0.00 2.45
5816 6395 0.392998 GTCACTGCCCGGTCATGATT 60.393 55.000 0.00 0.00 0.00 2.57
5817 6396 0.107703 TCACTGCCCGGTCATGATTC 60.108 55.000 0.00 0.00 0.00 2.52
5818 6397 0.107508 CACTGCCCGGTCATGATTCT 60.108 55.000 0.00 0.00 0.00 2.40
5819 6398 0.620556 ACTGCCCGGTCATGATTCTT 59.379 50.000 0.00 0.00 0.00 2.52
5820 6399 1.004745 ACTGCCCGGTCATGATTCTTT 59.995 47.619 0.00 0.00 0.00 2.52
5821 6400 1.402968 CTGCCCGGTCATGATTCTTTG 59.597 52.381 0.00 0.00 0.00 2.77
5822 6401 1.004161 TGCCCGGTCATGATTCTTTGA 59.996 47.619 0.00 0.00 0.00 2.69
5823 6402 1.401905 GCCCGGTCATGATTCTTTGAC 59.598 52.381 0.00 10.19 41.19 3.18
5830 6409 5.957910 GTCATGATTCTTTGACCTAGACG 57.042 43.478 0.00 0.00 36.98 4.18
5831 6410 4.806247 GTCATGATTCTTTGACCTAGACGG 59.194 45.833 0.00 0.00 36.98 4.79
5832 6411 3.887621 TGATTCTTTGACCTAGACGGG 57.112 47.619 0.00 0.00 36.97 5.28
5833 6412 2.093658 TGATTCTTTGACCTAGACGGGC 60.094 50.000 0.00 0.00 43.30 6.13
5834 6413 0.611714 TTCTTTGACCTAGACGGGCC 59.388 55.000 0.00 0.00 41.74 5.80
5835 6414 0.252103 TCTTTGACCTAGACGGGCCT 60.252 55.000 0.84 0.00 41.74 5.19
5836 6415 0.175989 CTTTGACCTAGACGGGCCTC 59.824 60.000 0.84 0.00 41.74 4.70
5837 6416 0.252103 TTTGACCTAGACGGGCCTCT 60.252 55.000 0.84 6.35 41.74 3.69
5838 6417 0.683504 TTGACCTAGACGGGCCTCTC 60.684 60.000 0.84 0.00 41.74 3.20
5839 6418 1.076923 GACCTAGACGGGCCTCTCA 60.077 63.158 0.84 0.00 33.11 3.27
5840 6419 0.683504 GACCTAGACGGGCCTCTCAA 60.684 60.000 0.84 0.00 33.11 3.02
5841 6420 0.252103 ACCTAGACGGGCCTCTCAAA 60.252 55.000 0.84 0.00 36.97 2.69
5842 6421 0.175989 CCTAGACGGGCCTCTCAAAC 59.824 60.000 0.84 0.00 0.00 2.93
5843 6422 0.179134 CTAGACGGGCCTCTCAAACG 60.179 60.000 0.84 0.00 0.00 3.60
5844 6423 1.601419 TAGACGGGCCTCTCAAACGG 61.601 60.000 0.84 0.00 0.00 4.44
5845 6424 4.699522 ACGGGCCTCTCAAACGGC 62.700 66.667 0.84 0.00 45.55 5.68
5849 6428 2.436824 GCCTCTCAAACGGCCTCC 60.437 66.667 0.00 0.00 40.43 4.30
5850 6429 3.068881 CCTCTCAAACGGCCTCCA 58.931 61.111 0.00 0.00 0.00 3.86
5851 6430 1.374947 CCTCTCAAACGGCCTCCAA 59.625 57.895 0.00 0.00 0.00 3.53
5852 6431 0.250727 CCTCTCAAACGGCCTCCAAA 60.251 55.000 0.00 0.00 0.00 3.28
5853 6432 0.875059 CTCTCAAACGGCCTCCAAAC 59.125 55.000 0.00 0.00 0.00 2.93
5854 6433 0.882927 TCTCAAACGGCCTCCAAACG 60.883 55.000 0.00 0.00 0.00 3.60
5855 6434 2.050442 CAAACGGCCTCCAAACGC 60.050 61.111 0.00 0.00 0.00 4.84
5856 6435 3.292159 AAACGGCCTCCAAACGCC 61.292 61.111 0.00 0.00 42.05 5.68
5875 6454 4.660938 GGGCTGACCGGCACCTTT 62.661 66.667 0.00 0.00 40.61 3.11
5876 6455 3.056328 GGCTGACCGGCACCTTTC 61.056 66.667 0.00 0.00 38.25 2.62
5877 6456 2.281484 GCTGACCGGCACCTTTCA 60.281 61.111 0.00 0.00 0.00 2.69
5878 6457 1.675641 GCTGACCGGCACCTTTCAT 60.676 57.895 0.00 0.00 0.00 2.57
5879 6458 0.392461 GCTGACCGGCACCTTTCATA 60.392 55.000 0.00 0.00 0.00 2.15
5880 6459 1.747206 GCTGACCGGCACCTTTCATAT 60.747 52.381 0.00 0.00 0.00 1.78
5881 6460 2.213499 CTGACCGGCACCTTTCATATC 58.787 52.381 0.00 0.00 0.00 1.63
5882 6461 1.837439 TGACCGGCACCTTTCATATCT 59.163 47.619 0.00 0.00 0.00 1.98
5883 6462 3.035363 TGACCGGCACCTTTCATATCTA 58.965 45.455 0.00 0.00 0.00 1.98
5884 6463 3.452990 TGACCGGCACCTTTCATATCTAA 59.547 43.478 0.00 0.00 0.00 2.10
5885 6464 4.102524 TGACCGGCACCTTTCATATCTAAT 59.897 41.667 0.00 0.00 0.00 1.73
5886 6465 4.642429 ACCGGCACCTTTCATATCTAATC 58.358 43.478 0.00 0.00 0.00 1.75
5887 6466 4.003648 CCGGCACCTTTCATATCTAATCC 58.996 47.826 0.00 0.00 0.00 3.01
5888 6467 4.504864 CCGGCACCTTTCATATCTAATCCA 60.505 45.833 0.00 0.00 0.00 3.41
5889 6468 5.063204 CGGCACCTTTCATATCTAATCCAA 58.937 41.667 0.00 0.00 0.00 3.53
5890 6469 5.530915 CGGCACCTTTCATATCTAATCCAAA 59.469 40.000 0.00 0.00 0.00 3.28
5891 6470 6.207417 CGGCACCTTTCATATCTAATCCAAAT 59.793 38.462 0.00 0.00 0.00 2.32
5892 6471 7.390440 CGGCACCTTTCATATCTAATCCAAATA 59.610 37.037 0.00 0.00 0.00 1.40
5893 6472 9.247861 GGCACCTTTCATATCTAATCCAAATAT 57.752 33.333 0.00 0.00 0.00 1.28
6016 6595 3.792736 GGCGTGGCCCCACATAGA 61.793 66.667 16.94 0.00 46.47 1.98
6017 6596 2.270850 GCGTGGCCCCACATAGAA 59.729 61.111 16.94 0.00 46.47 2.10
6018 6597 1.377987 GCGTGGCCCCACATAGAAA 60.378 57.895 16.94 0.00 46.47 2.52
6019 6598 1.654023 GCGTGGCCCCACATAGAAAC 61.654 60.000 16.94 0.00 46.47 2.78
6020 6599 1.366111 CGTGGCCCCACATAGAAACG 61.366 60.000 16.94 0.00 46.47 3.60
6021 6600 0.322187 GTGGCCCCACATAGAAACGT 60.322 55.000 12.42 0.00 45.53 3.99
6022 6601 0.035820 TGGCCCCACATAGAAACGTC 60.036 55.000 0.00 0.00 0.00 4.34
6023 6602 0.746923 GGCCCCACATAGAAACGTCC 60.747 60.000 0.00 0.00 0.00 4.79
6024 6603 1.087771 GCCCCACATAGAAACGTCCG 61.088 60.000 0.00 0.00 0.00 4.79
6025 6604 0.533491 CCCCACATAGAAACGTCCGA 59.467 55.000 0.00 0.00 0.00 4.55
6026 6605 1.066716 CCCCACATAGAAACGTCCGAA 60.067 52.381 0.00 0.00 0.00 4.30
6027 6606 2.613474 CCCCACATAGAAACGTCCGAAA 60.613 50.000 0.00 0.00 0.00 3.46
6028 6607 3.068560 CCCACATAGAAACGTCCGAAAA 58.931 45.455 0.00 0.00 0.00 2.29
6029 6608 3.120442 CCCACATAGAAACGTCCGAAAAC 60.120 47.826 0.00 0.00 0.00 2.43
6030 6609 3.120442 CCACATAGAAACGTCCGAAAACC 60.120 47.826 0.00 0.00 0.00 3.27
6031 6610 3.069289 ACATAGAAACGTCCGAAAACCC 58.931 45.455 0.00 0.00 0.00 4.11
6032 6611 1.782044 TAGAAACGTCCGAAAACCCG 58.218 50.000 0.00 0.00 0.00 5.28
6049 6628 4.778143 GGCGGCCCGACTGATGTT 62.778 66.667 7.68 0.00 0.00 2.71
6050 6629 3.499737 GCGGCCCGACTGATGTTG 61.500 66.667 7.68 0.00 0.00 3.33
6051 6630 3.499737 CGGCCCGACTGATGTTGC 61.500 66.667 0.00 0.00 0.00 4.17
6052 6631 3.499737 GGCCCGACTGATGTTGCG 61.500 66.667 0.00 0.00 0.00 4.85
6053 6632 2.742372 GCCCGACTGATGTTGCGT 60.742 61.111 0.00 0.00 0.00 5.24
6054 6633 2.740714 GCCCGACTGATGTTGCGTC 61.741 63.158 0.00 0.00 0.00 5.19
6055 6634 2.100631 CCCGACTGATGTTGCGTCC 61.101 63.158 0.00 0.00 0.00 4.79
6056 6635 2.444624 CCGACTGATGTTGCGTCCG 61.445 63.158 0.00 0.00 0.00 4.79
6057 6636 1.733041 CGACTGATGTTGCGTCCGT 60.733 57.895 0.00 0.00 0.00 4.69
6058 6637 1.674611 CGACTGATGTTGCGTCCGTC 61.675 60.000 3.78 3.78 32.75 4.79
6059 6638 1.674611 GACTGATGTTGCGTCCGTCG 61.675 60.000 0.00 0.00 43.12 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.229137 GCCTATATACTAGATATTTACCGAGCG 58.771 40.741 0.00 0.00 0.00 5.03
102 103 2.552315 GCGACACCCAATTTCTTCTTCA 59.448 45.455 0.00 0.00 0.00 3.02
117 118 3.252458 ACCTAACAAATGGAAAGCGACAC 59.748 43.478 0.00 0.00 0.00 3.67
151 152 2.167075 GCAAAGGAAATAGCACCAGCAT 59.833 45.455 0.00 0.00 45.49 3.79
171 172 0.674895 AGAGCAGGACACCAAATCGC 60.675 55.000 0.00 0.00 0.00 4.58
189 190 4.128925 TGTGGCTAACTGCTAATCAGAG 57.871 45.455 0.00 0.00 45.72 3.35
205 206 5.247507 TGCACATATAAAAGTGATGTGGC 57.752 39.130 14.21 8.35 46.85 5.01
241 242 2.503356 ACCAAACAAAATCTTGTGCCCA 59.497 40.909 0.00 0.00 45.25 5.36
242 243 3.192541 ACCAAACAAAATCTTGTGCCC 57.807 42.857 0.00 0.00 45.25 5.36
270 271 6.492772 AGGCAAGATTCTTCACTGAGAAAATT 59.507 34.615 0.00 0.00 38.98 1.82
271 272 6.008960 AGGCAAGATTCTTCACTGAGAAAAT 58.991 36.000 0.00 0.00 38.98 1.82
277 278 2.039480 AGCAGGCAAGATTCTTCACTGA 59.961 45.455 22.01 0.00 0.00 3.41
279 280 2.224719 ACAGCAGGCAAGATTCTTCACT 60.225 45.455 0.00 0.00 0.00 3.41
289 290 1.829533 ACCAACCACAGCAGGCAAG 60.830 57.895 0.00 0.00 0.00 4.01
361 362 2.733956 GGGCATCCCTACAATTTCACA 58.266 47.619 0.00 0.00 41.34 3.58
390 392 0.384669 CGGACTAGGGACGTTGATCC 59.615 60.000 0.00 0.00 38.13 3.36
469 471 7.509659 ACGGAGGGAGTAGATTATAATTGAAGT 59.490 37.037 0.00 0.00 0.00 3.01
480 482 2.544844 TGGAACGGAGGGAGTAGATT 57.455 50.000 0.00 0.00 0.00 2.40
482 484 2.314071 TTTGGAACGGAGGGAGTAGA 57.686 50.000 0.00 0.00 0.00 2.59
483 485 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
484 486 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
485 487 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
486 488 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
488 490 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
489 491 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
490 492 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
491 493 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
492 494 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
493 495 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
535 537 9.880157 CCATTCCAAAATAGATGATTCAACTTT 57.120 29.630 1.47 0.00 0.00 2.66
536 538 9.258629 TCCATTCCAAAATAGATGATTCAACTT 57.741 29.630 1.47 0.00 0.00 2.66
537 539 8.827832 TCCATTCCAAAATAGATGATTCAACT 57.172 30.769 1.83 1.83 0.00 3.16
538 540 8.139989 CCTCCATTCCAAAATAGATGATTCAAC 58.860 37.037 0.00 0.00 0.00 3.18
539 541 7.288389 CCCTCCATTCCAAAATAGATGATTCAA 59.712 37.037 0.00 0.00 0.00 2.69
540 542 6.779049 CCCTCCATTCCAAAATAGATGATTCA 59.221 38.462 0.00 0.00 0.00 2.57
541 543 7.006509 TCCCTCCATTCCAAAATAGATGATTC 58.993 38.462 0.00 0.00 0.00 2.52
542 544 6.925934 TCCCTCCATTCCAAAATAGATGATT 58.074 36.000 0.00 0.00 0.00 2.57
543 545 6.103797 ACTCCCTCCATTCCAAAATAGATGAT 59.896 38.462 0.00 0.00 0.00 2.45
544 546 5.433051 ACTCCCTCCATTCCAAAATAGATGA 59.567 40.000 0.00 0.00 0.00 2.92
545 547 5.699143 ACTCCCTCCATTCCAAAATAGATG 58.301 41.667 0.00 0.00 0.00 2.90
546 548 6.466470 GCTACTCCCTCCATTCCAAAATAGAT 60.466 42.308 0.00 0.00 0.00 1.98
547 549 5.163195 GCTACTCCCTCCATTCCAAAATAGA 60.163 44.000 0.00 0.00 0.00 1.98
548 550 5.066593 GCTACTCCCTCCATTCCAAAATAG 58.933 45.833 0.00 0.00 0.00 1.73
549 551 4.476846 TGCTACTCCCTCCATTCCAAAATA 59.523 41.667 0.00 0.00 0.00 1.40
550 552 3.269381 TGCTACTCCCTCCATTCCAAAAT 59.731 43.478 0.00 0.00 0.00 1.82
551 553 2.647299 TGCTACTCCCTCCATTCCAAAA 59.353 45.455 0.00 0.00 0.00 2.44
552 554 2.274542 TGCTACTCCCTCCATTCCAAA 58.725 47.619 0.00 0.00 0.00 3.28
553 555 1.965414 TGCTACTCCCTCCATTCCAA 58.035 50.000 0.00 0.00 0.00 3.53
554 556 1.965414 TTGCTACTCCCTCCATTCCA 58.035 50.000 0.00 0.00 0.00 3.53
555 557 3.366052 TTTTGCTACTCCCTCCATTCC 57.634 47.619 0.00 0.00 0.00 3.01
556 558 3.696548 CCTTTTTGCTACTCCCTCCATTC 59.303 47.826 0.00 0.00 0.00 2.67
557 559 3.701664 CCTTTTTGCTACTCCCTCCATT 58.298 45.455 0.00 0.00 0.00 3.16
558 560 2.621668 GCCTTTTTGCTACTCCCTCCAT 60.622 50.000 0.00 0.00 0.00 3.41
559 561 1.271926 GCCTTTTTGCTACTCCCTCCA 60.272 52.381 0.00 0.00 0.00 3.86
560 562 1.271926 TGCCTTTTTGCTACTCCCTCC 60.272 52.381 0.00 0.00 0.00 4.30
561 563 2.200373 TGCCTTTTTGCTACTCCCTC 57.800 50.000 0.00 0.00 0.00 4.30
562 564 2.675658 TTGCCTTTTTGCTACTCCCT 57.324 45.000 0.00 0.00 0.00 4.20
563 565 3.390135 GTTTTGCCTTTTTGCTACTCCC 58.610 45.455 0.00 0.00 0.00 4.30
564 566 3.049912 CGTTTTGCCTTTTTGCTACTCC 58.950 45.455 0.00 0.00 0.00 3.85
565 567 2.471370 GCGTTTTGCCTTTTTGCTACTC 59.529 45.455 0.00 0.00 37.76 2.59
566 568 2.159170 TGCGTTTTGCCTTTTTGCTACT 60.159 40.909 0.00 0.00 45.60 2.57
567 569 2.197577 TGCGTTTTGCCTTTTTGCTAC 58.802 42.857 0.00 0.00 45.60 3.58
568 570 2.586258 TGCGTTTTGCCTTTTTGCTA 57.414 40.000 0.00 0.00 45.60 3.49
569 571 1.731720 TTGCGTTTTGCCTTTTTGCT 58.268 40.000 0.00 0.00 45.60 3.91
570 572 2.534231 TTTGCGTTTTGCCTTTTTGC 57.466 40.000 0.00 0.00 45.60 3.68
571 573 4.656041 TCATTTTGCGTTTTGCCTTTTTG 58.344 34.783 0.00 0.00 45.60 2.44
572 574 4.954092 TCATTTTGCGTTTTGCCTTTTT 57.046 31.818 0.00 0.00 45.60 1.94
573 575 4.633565 TCTTCATTTTGCGTTTTGCCTTTT 59.366 33.333 0.00 0.00 45.60 2.27
574 576 4.187694 TCTTCATTTTGCGTTTTGCCTTT 58.812 34.783 0.00 0.00 45.60 3.11
575 577 3.791245 TCTTCATTTTGCGTTTTGCCTT 58.209 36.364 0.00 0.00 45.60 4.35
576 578 3.383761 CTCTTCATTTTGCGTTTTGCCT 58.616 40.909 0.00 0.00 45.60 4.75
577 579 2.096762 GCTCTTCATTTTGCGTTTTGCC 60.097 45.455 0.00 0.00 45.60 4.52
578 580 2.539274 TGCTCTTCATTTTGCGTTTTGC 59.461 40.909 0.00 0.00 46.70 3.68
579 581 4.682860 AGATGCTCTTCATTTTGCGTTTTG 59.317 37.500 0.00 0.00 35.05 2.44
580 582 4.874970 AGATGCTCTTCATTTTGCGTTTT 58.125 34.783 0.00 0.00 35.05 2.43
581 583 4.510038 AGATGCTCTTCATTTTGCGTTT 57.490 36.364 0.00 0.00 35.05 3.60
582 584 4.232221 CAAGATGCTCTTCATTTTGCGTT 58.768 39.130 0.00 0.00 39.43 4.84
583 585 3.829948 CAAGATGCTCTTCATTTTGCGT 58.170 40.909 0.00 0.00 39.43 5.24
626 628 8.012241 GCAAGAGATTAATTTAGCTGGTTATCG 58.988 37.037 0.00 0.00 0.00 2.92
661 663 4.635699 ATCTGGTTACCTCGTTTTCCTT 57.364 40.909 2.07 0.00 0.00 3.36
662 664 5.750352 TTATCTGGTTACCTCGTTTTCCT 57.250 39.130 2.07 0.00 0.00 3.36
717 719 9.907229 TTTGGGGTTGTTAATTTATGAGTTTTT 57.093 25.926 0.00 0.00 0.00 1.94
718 720 9.907229 TTTTGGGGTTGTTAATTTATGAGTTTT 57.093 25.926 0.00 0.00 0.00 2.43
719 721 9.907229 TTTTTGGGGTTGTTAATTTATGAGTTT 57.093 25.926 0.00 0.00 0.00 2.66
759 762 8.579863 TCAGAAAAGAGAAAAATGGGAGATTTC 58.420 33.333 0.00 0.00 34.14 2.17
803 806 3.153130 TCAATCCAAACGCATTCCTTCA 58.847 40.909 0.00 0.00 0.00 3.02
804 807 3.428045 CCTCAATCCAAACGCATTCCTTC 60.428 47.826 0.00 0.00 0.00 3.46
807 810 1.134946 CCCTCAATCCAAACGCATTCC 59.865 52.381 0.00 0.00 0.00 3.01
808 811 1.134946 CCCCTCAATCCAAACGCATTC 59.865 52.381 0.00 0.00 0.00 2.67
839 849 2.528743 GCATCCACCAGACGCATCG 61.529 63.158 0.00 0.00 0.00 3.84
885 895 3.725010 CGAGCGTCCTTCATTTTAACTGC 60.725 47.826 0.00 0.00 0.00 4.40
896 906 2.892425 CATGGCCGAGCGTCCTTC 60.892 66.667 0.00 0.00 0.00 3.46
960 970 2.608988 CCTCCTGGTGGTGCTCCT 60.609 66.667 6.34 0.00 34.23 3.69
962 972 4.416738 GGCCTCCTGGTGGTGCTC 62.417 72.222 15.72 0.00 34.36 4.26
990 1009 2.946084 ATGGCCATGGTGGGTGGA 60.946 61.111 20.04 0.00 39.12 4.02
1167 1189 1.266718 GTGATTGTTTCGGCAAGAGCA 59.733 47.619 0.00 0.00 44.61 4.26
1174 1196 0.802494 ATGACCGTGATTGTTTCGGC 59.198 50.000 2.72 0.00 46.92 5.54
1310 1356 1.276415 CACGGGCAACAAACAAACAG 58.724 50.000 0.00 0.00 39.74 3.16
1512 1604 1.679139 CTGCAAACCACCAGACAGAA 58.321 50.000 0.00 0.00 0.00 3.02
1603 1695 0.763035 ACCCCTCGCTGTACTTGTTT 59.237 50.000 0.00 0.00 0.00 2.83
1657 1749 1.925972 GGAGGAAGGAACAGGGCCT 60.926 63.158 0.00 0.00 37.35 5.19
1659 1751 0.912006 AGAGGAGGAAGGAACAGGGC 60.912 60.000 0.00 0.00 0.00 5.19
1662 1754 1.974236 ACACAGAGGAGGAAGGAACAG 59.026 52.381 0.00 0.00 0.00 3.16
1674 1766 7.714377 AGCATTCTTCAGATATAAACACAGAGG 59.286 37.037 0.00 0.00 0.00 3.69
1681 1773 7.358830 GCTCCAAGCATTCTTCAGATATAAAC 58.641 38.462 0.00 0.00 41.89 2.01
1737 1831 2.116827 AAACGACCACACCAGTTCAA 57.883 45.000 0.00 0.00 0.00 2.69
1746 1840 2.010582 GCAAGGCCAAAACGACCACA 62.011 55.000 5.01 0.00 0.00 4.17
1747 1841 1.299850 GCAAGGCCAAAACGACCAC 60.300 57.895 5.01 0.00 0.00 4.16
1748 1842 1.040339 AAGCAAGGCCAAAACGACCA 61.040 50.000 5.01 0.00 0.00 4.02
1839 1933 3.523972 AGATTTTACCTCCCCACTTCTCC 59.476 47.826 0.00 0.00 0.00 3.71
1881 1975 6.814146 ACACGAGAGAACCTGATAAGAAAATC 59.186 38.462 0.00 0.00 0.00 2.17
1886 1980 3.695060 GGACACGAGAGAACCTGATAAGA 59.305 47.826 0.00 0.00 0.00 2.10
1929 2027 9.117183 ACCGTAGAATTTATAGAAAAACATCCC 57.883 33.333 0.00 0.00 0.00 3.85
1952 2050 5.479306 CCTATGTCCACATAAAGGATACCG 58.521 45.833 3.25 0.00 38.26 4.02
1953 2051 5.309806 ACCCTATGTCCACATAAAGGATACC 59.690 44.000 16.92 0.00 38.26 2.73
1954 2052 6.042781 TGACCCTATGTCCACATAAAGGATAC 59.957 42.308 16.92 10.69 43.78 2.24
1993 2091 2.819608 GCATCACCAAAAGCACTAGGAA 59.180 45.455 0.00 0.00 0.00 3.36
1995 2093 2.161855 TGCATCACCAAAAGCACTAGG 58.838 47.619 0.00 0.00 31.05 3.02
1999 2097 3.391965 TCATTTGCATCACCAAAAGCAC 58.608 40.909 0.00 0.00 38.12 4.40
2053 2151 5.645497 GGAGCATAATAAGATTGGCTCGAAT 59.355 40.000 15.46 0.00 46.45 3.34
2090 2188 8.584063 TTACCCTATTTCCCATCAAGTAAAAC 57.416 34.615 0.00 0.00 0.00 2.43
2221 2319 7.334171 GCTTTGGAATTAACCAGCATATTTTGT 59.666 33.333 0.00 0.00 41.19 2.83
2226 2324 6.796785 AAGCTTTGGAATTAACCAGCATAT 57.203 33.333 0.00 0.00 41.19 1.78
2231 2329 8.137437 CCATATGTAAGCTTTGGAATTAACCAG 58.863 37.037 3.20 0.00 41.19 4.00
2236 2334 9.116067 GTGTACCATATGTAAGCTTTGGAATTA 57.884 33.333 18.81 0.99 0.00 1.40
2317 2416 7.227512 GGACAATTATCACTCCAAGAACATAGG 59.772 40.741 0.00 0.00 0.00 2.57
2725 2824 7.063191 CCATAGAAGTTTCTCGAGCATCATATG 59.937 40.741 7.81 9.56 38.70 1.78
2734 2833 4.377839 TGAGCCATAGAAGTTTCTCGAG 57.622 45.455 5.93 5.93 38.70 4.04
2736 2835 4.272018 CCATTGAGCCATAGAAGTTTCTCG 59.728 45.833 0.00 0.00 38.70 4.04
2745 2844 5.819991 AGAAAAGAACCATTGAGCCATAGA 58.180 37.500 0.00 0.00 0.00 1.98
2747 2846 5.774690 ACAAGAAAAGAACCATTGAGCCATA 59.225 36.000 0.00 0.00 0.00 2.74
2920 3019 9.730420 GCATAAGTAATGTTAAAATTGATCGGT 57.270 29.630 0.78 0.00 37.93 4.69
2963 3063 9.131791 ACCATTTCTTTTAGCTGAAGTAAGAAA 57.868 29.630 15.07 15.07 44.28 2.52
2964 3064 8.691661 ACCATTTCTTTTAGCTGAAGTAAGAA 57.308 30.769 0.00 0.00 34.15 2.52
2965 3065 8.691661 AACCATTTCTTTTAGCTGAAGTAAGA 57.308 30.769 0.00 0.00 0.00 2.10
2966 3066 9.399403 GAAACCATTTCTTTTAGCTGAAGTAAG 57.601 33.333 0.00 0.00 36.73 2.34
3109 3234 1.676006 CGGCACTTTTCTCCAACTGTT 59.324 47.619 0.00 0.00 0.00 3.16
3110 3235 1.308998 CGGCACTTTTCTCCAACTGT 58.691 50.000 0.00 0.00 0.00 3.55
3248 3373 4.660771 AGTTAATCACTGATTAGGAGGGGG 59.339 45.833 10.67 0.00 36.15 5.40
3249 3374 5.896073 AGTTAATCACTGATTAGGAGGGG 57.104 43.478 10.67 0.00 36.15 4.79
3250 3375 6.889198 TGAAGTTAATCACTGATTAGGAGGG 58.111 40.000 10.67 0.00 36.15 4.30
3251 3376 8.970859 ATTGAAGTTAATCACTGATTAGGAGG 57.029 34.615 10.67 0.00 36.15 4.30
3261 3386 9.846248 GCACAATAGAAATTGAAGTTAATCACT 57.154 29.630 5.18 0.00 44.50 3.41
3262 3387 9.624697 TGCACAATAGAAATTGAAGTTAATCAC 57.375 29.630 5.18 0.00 44.50 3.06
3553 4040 3.165875 ACTGCAGGTTAAGCTCAGTAGA 58.834 45.455 25.11 2.49 36.37 2.59
3657 4144 1.835927 GCAGACCTGGGAAGACAGCT 61.836 60.000 0.00 0.00 37.16 4.24
3711 4198 2.965147 CTGCTTAAGCGCAACGGCA 61.965 57.895 21.97 13.75 45.83 5.69
3770 4259 8.181573 CACAGAACGGCAAACTGTATAAAATAT 58.818 33.333 0.00 0.00 41.93 1.28
3817 4306 6.664515 TGAGTAGTTGCCTGAAATTTAAACG 58.335 36.000 0.00 0.00 0.00 3.60
3925 4414 4.772100 AGGTCCAGTTTTCATGGGTAAATG 59.228 41.667 0.00 0.00 38.44 2.32
3935 4424 5.487488 ACAGGTATCATAGGTCCAGTTTTCA 59.513 40.000 0.00 0.00 0.00 2.69
4032 4521 6.350103 TGGCATGAGACAAAATATACGGTAA 58.650 36.000 0.00 0.00 0.00 2.85
4066 4555 6.737254 TTGAAGTAAGTTATACAAGCTGCC 57.263 37.500 0.00 0.00 0.00 4.85
4067 4556 9.065871 CAATTTGAAGTAAGTTATACAAGCTGC 57.934 33.333 0.00 0.00 0.00 5.25
4077 4566 8.470805 TCCAACAAAGCAATTTGAAGTAAGTTA 58.529 29.630 7.66 0.00 35.93 2.24
4107 4596 9.665719 TTAATTAATGTTGATACTCAGCACTCA 57.334 29.630 0.00 0.00 40.32 3.41
4112 4610 9.734620 TGCAATTAATTAATGTTGATACTCAGC 57.265 29.630 11.42 0.00 0.00 4.26
4120 4618 9.941325 ATCCTGTTTGCAATTAATTAATGTTGA 57.059 25.926 11.42 0.00 0.00 3.18
4303 4827 7.650104 TCCGGTCAAAAGAATCACAAAAATAAC 59.350 33.333 0.00 0.00 0.00 1.89
4420 4948 8.366401 AGAGTCCTGACATGACATAATATTCTG 58.634 37.037 12.61 0.00 35.15 3.02
4432 4960 4.590647 GGGATGATAAGAGTCCTGACATGA 59.409 45.833 0.00 0.00 32.55 3.07
4444 4972 9.258629 ACATGAAATTTGAAAGGGATGATAAGA 57.741 29.630 0.00 0.00 0.00 2.10
4453 4981 5.951747 TCCCTAGACATGAAATTTGAAAGGG 59.048 40.000 0.00 2.55 41.13 3.95
4492 5020 6.239036 GCACATTTTCTAAAACCTTCTCCACT 60.239 38.462 0.00 0.00 0.00 4.00
4540 5068 2.107204 AGCTGAAACATCACCAGGAACT 59.893 45.455 0.00 0.00 43.88 3.01
4592 5120 5.443185 ACAACCATTATATGAGTGCATGC 57.557 39.130 11.82 11.82 35.94 4.06
4593 5121 7.268199 AGAACAACCATTATATGAGTGCATG 57.732 36.000 0.00 0.00 35.94 4.06
4594 5122 7.886629 AAGAACAACCATTATATGAGTGCAT 57.113 32.000 0.00 0.00 38.54 3.96
4595 5123 8.800370 TTAAGAACAACCATTATATGAGTGCA 57.200 30.769 0.00 0.00 0.00 4.57
4630 5159 8.193438 AGGCAATCAGATTTTGCTAACTTAATC 58.807 33.333 8.35 0.00 46.74 1.75
4632 5161 7.039784 ACAGGCAATCAGATTTTGCTAACTTAA 60.040 33.333 8.35 0.00 46.74 1.85
4640 5169 3.256558 GGAACAGGCAATCAGATTTTGC 58.743 45.455 0.63 0.63 46.82 3.68
4646 5175 0.684535 TCACGGAACAGGCAATCAGA 59.315 50.000 0.00 0.00 0.00 3.27
4653 5182 0.955428 TGCAAGATCACGGAACAGGC 60.955 55.000 0.00 0.00 0.00 4.85
4662 5191 0.681243 GGGGGTTCCTGCAAGATCAC 60.681 60.000 0.00 0.00 34.07 3.06
4671 5200 4.090588 TAAGCGCGGGGGTTCCTG 62.091 66.667 12.91 0.00 42.40 3.86
4684 5213 6.404074 CCTCAACAAATCCTCTTGATGTAAGC 60.404 42.308 0.00 0.00 36.31 3.09
4759 5288 2.692557 TGCTGCAGCTTTAACCTTCAAA 59.307 40.909 36.61 11.32 42.66 2.69
4806 5335 6.092807 GGAGAGCAACAGAAAATAGTTCGAAT 59.907 38.462 0.00 0.00 0.00 3.34
4809 5338 4.690748 TGGAGAGCAACAGAAAATAGTTCG 59.309 41.667 0.00 0.00 0.00 3.95
4810 5339 5.934625 TCTGGAGAGCAACAGAAAATAGTTC 59.065 40.000 0.00 0.00 40.51 3.01
4813 5342 5.486526 ACTCTGGAGAGCAACAGAAAATAG 58.513 41.667 3.45 0.00 45.79 1.73
4814 5343 5.482908 GACTCTGGAGAGCAACAGAAAATA 58.517 41.667 3.45 0.00 45.79 1.40
4815 5344 4.322567 GACTCTGGAGAGCAACAGAAAAT 58.677 43.478 3.45 0.00 45.79 1.82
4828 5359 1.342074 TGTGGTTCTGGACTCTGGAG 58.658 55.000 0.00 0.00 0.00 3.86
4833 5364 3.077359 CAAGGAATGTGGTTCTGGACTC 58.923 50.000 0.00 0.00 37.01 3.36
4835 5366 2.863809 ACAAGGAATGTGGTTCTGGAC 58.136 47.619 0.00 0.00 41.93 4.02
4845 5376 3.456380 AAGGGCATACACAAGGAATGT 57.544 42.857 0.00 0.00 45.34 2.71
4846 5377 3.632145 GGTAAGGGCATACACAAGGAATG 59.368 47.826 2.71 0.00 0.00 2.67
4847 5378 3.527665 AGGTAAGGGCATACACAAGGAAT 59.472 43.478 2.71 0.00 0.00 3.01
4848 5379 2.916934 AGGTAAGGGCATACACAAGGAA 59.083 45.455 2.71 0.00 0.00 3.36
4850 5381 3.433173 GGTAGGTAAGGGCATACACAAGG 60.433 52.174 2.71 0.00 0.00 3.61
4851 5382 3.199071 TGGTAGGTAAGGGCATACACAAG 59.801 47.826 2.71 0.00 0.00 3.16
4853 5384 2.502538 GTGGTAGGTAAGGGCATACACA 59.497 50.000 0.00 0.00 0.00 3.72
4854 5385 2.502538 TGTGGTAGGTAAGGGCATACAC 59.497 50.000 2.71 0.00 0.00 2.90
4872 5403 9.730705 AACAGTATCAATAATATGATCCCTGTG 57.269 33.333 16.56 4.31 43.75 3.66
5041 5574 7.451877 TCTTAGTTCTTGTACTTCATGGTCTCT 59.548 37.037 0.00 0.00 0.00 3.10
5099 5633 7.609532 AGGACTGAAGGAGATAATTTGTTTCTG 59.390 37.037 0.00 0.00 0.00 3.02
5116 5650 6.866770 TCGTATGTGTTTCTTAAGGACTGAAG 59.133 38.462 1.85 0.00 0.00 3.02
5117 5651 6.751157 TCGTATGTGTTTCTTAAGGACTGAA 58.249 36.000 1.85 0.00 0.00 3.02
5118 5652 6.335471 TCGTATGTGTTTCTTAAGGACTGA 57.665 37.500 1.85 0.00 0.00 3.41
5148 5691 7.020827 TCCTTCTCCTGATAACAACTGAATT 57.979 36.000 0.00 0.00 0.00 2.17
5273 5818 5.932303 TGTCTGTGATTAAGCAAAGAGGTAC 59.068 40.000 13.88 3.93 32.95 3.34
5285 5830 5.931724 TCGAAAGCAGAATGTCTGTGATTAA 59.068 36.000 7.08 0.00 45.94 1.40
5332 5910 2.224281 TGTACTCAGTTGTGCTTCCTGG 60.224 50.000 0.00 0.00 0.00 4.45
5335 5913 3.467803 ACTTGTACTCAGTTGTGCTTCC 58.532 45.455 0.00 0.00 0.00 3.46
5344 5922 6.169557 TGTTTACATGGACTTGTACTCAGT 57.830 37.500 0.00 0.00 31.98 3.41
5350 5929 7.826744 TGCATCTATTGTTTACATGGACTTGTA 59.173 33.333 0.00 0.00 0.00 2.41
5374 5953 1.731433 ATGGTGGCGCTTCATCATGC 61.731 55.000 11.04 0.00 37.13 4.06
5439 6018 6.780457 ATGTGCCTGCAATAAGAAACTATT 57.220 33.333 0.00 0.00 0.00 1.73
5548 6127 5.614668 GCCGAATCATATGTGTTATCCAACG 60.615 44.000 1.90 0.00 37.48 4.10
5550 6129 5.620206 AGCCGAATCATATGTGTTATCCAA 58.380 37.500 1.90 0.00 0.00 3.53
5551 6130 5.227569 AGCCGAATCATATGTGTTATCCA 57.772 39.130 1.90 0.00 0.00 3.41
5561 6140 6.528321 TCAAGATCTCAAAGCCGAATCATAT 58.472 36.000 0.00 0.00 0.00 1.78
5608 6187 8.610896 CAGGAACTTCATCAGAAAGATAATGTC 58.389 37.037 0.00 0.00 34.60 3.06
5657 6236 2.328099 GGGAACAGCGCTTGTGGAG 61.328 63.158 7.50 0.00 40.74 3.86
5660 6239 2.949106 CAGGGAACAGCGCTTGTG 59.051 61.111 7.50 0.00 40.74 3.33
5661 6240 2.980233 GCAGGGAACAGCGCTTGT 60.980 61.111 7.50 6.97 43.45 3.16
5701 6280 1.729131 CAACGGCGCATTGAACACC 60.729 57.895 16.35 0.00 0.00 4.16
5721 6300 5.410746 CACCTAGGATTACATAGCTGCATTG 59.589 44.000 17.98 0.99 0.00 2.82
5730 6309 5.987347 GCTTTTACGCACCTAGGATTACATA 59.013 40.000 17.98 0.00 0.00 2.29
5734 6313 4.475051 TGCTTTTACGCACCTAGGATTA 57.525 40.909 17.98 0.00 34.44 1.75
5735 6314 3.343941 TGCTTTTACGCACCTAGGATT 57.656 42.857 17.98 0.00 34.44 3.01
5736 6315 3.134804 AGATGCTTTTACGCACCTAGGAT 59.865 43.478 17.98 0.00 43.61 3.24
5737 6316 2.500098 AGATGCTTTTACGCACCTAGGA 59.500 45.455 17.98 0.00 43.61 2.94
5738 6317 2.906354 AGATGCTTTTACGCACCTAGG 58.094 47.619 7.41 7.41 43.61 3.02
5739 6318 4.430007 TGTAGATGCTTTTACGCACCTAG 58.570 43.478 0.00 0.00 43.61 3.02
5740 6319 4.459390 TGTAGATGCTTTTACGCACCTA 57.541 40.909 0.00 0.00 43.61 3.08
5741 6320 3.328382 TGTAGATGCTTTTACGCACCT 57.672 42.857 0.00 0.00 43.61 4.00
5742 6321 3.425758 GGTTGTAGATGCTTTTACGCACC 60.426 47.826 6.01 6.01 43.61 5.01
5743 6322 3.723835 CGGTTGTAGATGCTTTTACGCAC 60.724 47.826 0.00 0.00 43.61 5.34
5744 6323 2.413796 CGGTTGTAGATGCTTTTACGCA 59.586 45.455 0.00 0.00 45.10 5.24
5745 6324 2.222953 CCGGTTGTAGATGCTTTTACGC 60.223 50.000 0.00 0.00 0.00 4.42
5746 6325 3.061697 GTCCGGTTGTAGATGCTTTTACG 59.938 47.826 0.00 0.00 0.00 3.18
5747 6326 3.373130 GGTCCGGTTGTAGATGCTTTTAC 59.627 47.826 0.00 0.00 0.00 2.01
5748 6327 3.262405 AGGTCCGGTTGTAGATGCTTTTA 59.738 43.478 0.00 0.00 0.00 1.52
5749 6328 2.039879 AGGTCCGGTTGTAGATGCTTTT 59.960 45.455 0.00 0.00 0.00 2.27
5750 6329 1.628846 AGGTCCGGTTGTAGATGCTTT 59.371 47.619 0.00 0.00 0.00 3.51
5751 6330 1.207329 GAGGTCCGGTTGTAGATGCTT 59.793 52.381 0.00 0.00 0.00 3.91
5752 6331 0.824759 GAGGTCCGGTTGTAGATGCT 59.175 55.000 0.00 0.00 0.00 3.79
5753 6332 0.824759 AGAGGTCCGGTTGTAGATGC 59.175 55.000 0.00 0.00 0.00 3.91
5754 6333 2.100197 TGAGAGGTCCGGTTGTAGATG 58.900 52.381 0.00 0.00 0.00 2.90
5755 6334 2.526888 TGAGAGGTCCGGTTGTAGAT 57.473 50.000 0.00 0.00 0.00 1.98
5756 6335 2.297698 TTGAGAGGTCCGGTTGTAGA 57.702 50.000 0.00 0.00 0.00 2.59
5757 6336 2.612221 GGTTTGAGAGGTCCGGTTGTAG 60.612 54.545 0.00 0.00 0.00 2.74
5758 6337 1.345415 GGTTTGAGAGGTCCGGTTGTA 59.655 52.381 0.00 0.00 0.00 2.41
5759 6338 0.108019 GGTTTGAGAGGTCCGGTTGT 59.892 55.000 0.00 0.00 0.00 3.32
5760 6339 0.605589 GGGTTTGAGAGGTCCGGTTG 60.606 60.000 0.00 0.00 0.00 3.77
5761 6340 1.759236 GGGTTTGAGAGGTCCGGTT 59.241 57.895 0.00 0.00 0.00 4.44
5762 6341 2.580601 CGGGTTTGAGAGGTCCGGT 61.581 63.158 0.00 0.00 37.35 5.28
5763 6342 2.264794 CGGGTTTGAGAGGTCCGG 59.735 66.667 0.00 0.00 37.35 5.14
5764 6343 2.434359 GCGGGTTTGAGAGGTCCG 60.434 66.667 0.00 0.00 43.13 4.79
5765 6344 0.673956 GAAGCGGGTTTGAGAGGTCC 60.674 60.000 0.00 0.00 0.00 4.46
5766 6345 0.034896 TGAAGCGGGTTTGAGAGGTC 59.965 55.000 0.00 0.00 0.00 3.85
5767 6346 0.693049 ATGAAGCGGGTTTGAGAGGT 59.307 50.000 0.00 0.00 0.00 3.85
5768 6347 2.691409 TATGAAGCGGGTTTGAGAGG 57.309 50.000 0.00 0.00 0.00 3.69
5769 6348 2.289002 GCATATGAAGCGGGTTTGAGAG 59.711 50.000 6.97 0.00 0.00 3.20
5770 6349 2.288666 GCATATGAAGCGGGTTTGAGA 58.711 47.619 6.97 0.00 0.00 3.27
5771 6350 1.334869 GGCATATGAAGCGGGTTTGAG 59.665 52.381 6.97 0.00 0.00 3.02
5772 6351 1.388547 GGCATATGAAGCGGGTTTGA 58.611 50.000 6.97 0.00 0.00 2.69
5773 6352 0.029300 CGGCATATGAAGCGGGTTTG 59.971 55.000 6.97 0.00 0.00 2.93
5774 6353 0.107410 TCGGCATATGAAGCGGGTTT 60.107 50.000 6.97 0.00 33.68 3.27
5775 6354 0.814010 GTCGGCATATGAAGCGGGTT 60.814 55.000 6.97 0.00 33.68 4.11
5776 6355 1.227556 GTCGGCATATGAAGCGGGT 60.228 57.895 6.97 0.00 33.68 5.28
5777 6356 1.961277 GGTCGGCATATGAAGCGGG 60.961 63.158 6.97 0.00 33.68 6.13
5778 6357 2.310233 CGGTCGGCATATGAAGCGG 61.310 63.158 6.97 0.00 0.00 5.52
5779 6358 2.310233 CCGGTCGGCATATGAAGCG 61.310 63.158 6.97 11.64 0.00 4.68
5780 6359 1.222115 GACCGGTCGGCATATGAAGC 61.222 60.000 20.85 0.00 39.32 3.86
5781 6360 0.104120 TGACCGGTCGGCATATGAAG 59.896 55.000 28.70 0.00 39.32 3.02
5782 6361 0.179094 GTGACCGGTCGGCATATGAA 60.179 55.000 28.70 5.71 39.32 2.57
5783 6362 1.040893 AGTGACCGGTCGGCATATGA 61.041 55.000 28.70 6.50 39.32 2.15
5784 6363 0.875908 CAGTGACCGGTCGGCATATG 60.876 60.000 28.70 16.13 39.32 1.78
5785 6364 1.441729 CAGTGACCGGTCGGCATAT 59.558 57.895 28.70 8.50 39.32 1.78
5786 6365 2.889617 CAGTGACCGGTCGGCATA 59.110 61.111 28.70 8.90 39.32 3.14
5787 6366 4.760047 GCAGTGACCGGTCGGCAT 62.760 66.667 29.59 15.39 39.32 4.40
5796 6375 2.257409 ATCATGACCGGGCAGTGACC 62.257 60.000 18.96 4.30 0.00 4.02
5797 6376 0.392998 AATCATGACCGGGCAGTGAC 60.393 55.000 18.96 0.00 0.00 3.67
5798 6377 0.107703 GAATCATGACCGGGCAGTGA 60.108 55.000 18.96 19.78 0.00 3.41
5799 6378 0.107508 AGAATCATGACCGGGCAGTG 60.108 55.000 18.96 14.75 0.00 3.66
5800 6379 0.620556 AAGAATCATGACCGGGCAGT 59.379 50.000 18.96 0.26 0.00 4.40
5801 6380 1.402968 CAAAGAATCATGACCGGGCAG 59.597 52.381 18.96 8.45 0.00 4.85
5802 6381 1.004161 TCAAAGAATCATGACCGGGCA 59.996 47.619 15.46 15.46 0.00 5.36
5803 6382 1.401905 GTCAAAGAATCATGACCGGGC 59.598 52.381 6.32 1.57 40.00 6.13
5808 6387 4.806247 CCGTCTAGGTCAAAGAATCATGAC 59.194 45.833 0.00 9.73 44.07 3.06
5809 6388 4.141937 CCCGTCTAGGTCAAAGAATCATGA 60.142 45.833 0.00 0.00 38.74 3.07
5810 6389 4.122776 CCCGTCTAGGTCAAAGAATCATG 58.877 47.826 0.00 0.00 38.74 3.07
5811 6390 3.432326 GCCCGTCTAGGTCAAAGAATCAT 60.432 47.826 0.00 0.00 38.74 2.45
5812 6391 2.093658 GCCCGTCTAGGTCAAAGAATCA 60.094 50.000 0.00 0.00 38.74 2.57
5813 6392 2.552031 GCCCGTCTAGGTCAAAGAATC 58.448 52.381 0.00 0.00 38.74 2.52
5814 6393 1.209747 GGCCCGTCTAGGTCAAAGAAT 59.790 52.381 0.00 0.00 38.74 2.40
5815 6394 0.611714 GGCCCGTCTAGGTCAAAGAA 59.388 55.000 0.00 0.00 38.74 2.52
5816 6395 0.252103 AGGCCCGTCTAGGTCAAAGA 60.252 55.000 0.00 0.00 38.74 2.52
5817 6396 0.175989 GAGGCCCGTCTAGGTCAAAG 59.824 60.000 0.00 0.00 38.74 2.77
5818 6397 0.252103 AGAGGCCCGTCTAGGTCAAA 60.252 55.000 0.00 0.00 38.74 2.69
5819 6398 0.683504 GAGAGGCCCGTCTAGGTCAA 60.684 60.000 0.00 0.00 38.74 3.18
5820 6399 1.076923 GAGAGGCCCGTCTAGGTCA 60.077 63.158 0.00 0.00 38.74 4.02
5821 6400 0.683504 TTGAGAGGCCCGTCTAGGTC 60.684 60.000 0.00 0.00 38.74 3.85
5822 6401 0.252103 TTTGAGAGGCCCGTCTAGGT 60.252 55.000 0.00 0.00 38.74 3.08
5823 6402 0.175989 GTTTGAGAGGCCCGTCTAGG 59.824 60.000 0.00 0.00 40.63 3.02
5824 6403 0.179134 CGTTTGAGAGGCCCGTCTAG 60.179 60.000 0.00 0.00 0.00 2.43
5825 6404 1.601419 CCGTTTGAGAGGCCCGTCTA 61.601 60.000 0.00 0.00 0.00 2.59
5826 6405 2.657237 CGTTTGAGAGGCCCGTCT 59.343 61.111 0.00 0.00 0.00 4.18
5827 6406 2.434359 CCGTTTGAGAGGCCCGTC 60.434 66.667 0.00 0.00 0.00 4.79
5833 6412 0.250727 TTTGGAGGCCGTTTGAGAGG 60.251 55.000 0.00 0.00 0.00 3.69
5834 6413 0.875059 GTTTGGAGGCCGTTTGAGAG 59.125 55.000 0.00 0.00 0.00 3.20
5835 6414 0.882927 CGTTTGGAGGCCGTTTGAGA 60.883 55.000 0.00 0.00 0.00 3.27
5836 6415 1.574428 CGTTTGGAGGCCGTTTGAG 59.426 57.895 0.00 0.00 0.00 3.02
5837 6416 2.548295 GCGTTTGGAGGCCGTTTGA 61.548 57.895 0.00 0.00 0.00 2.69
5838 6417 2.050442 GCGTTTGGAGGCCGTTTG 60.050 61.111 0.00 0.00 0.00 2.93
5839 6418 3.292159 GGCGTTTGGAGGCCGTTT 61.292 61.111 0.00 0.00 45.80 3.60
5858 6437 4.660938 AAAGGTGCCGGTCAGCCC 62.661 66.667 19.76 9.90 43.95 5.19
5859 6438 3.056328 GAAAGGTGCCGGTCAGCC 61.056 66.667 19.76 13.70 43.95 4.85
5860 6439 0.392461 TATGAAAGGTGCCGGTCAGC 60.392 55.000 16.93 16.93 43.25 4.26
5861 6440 2.158900 AGATATGAAAGGTGCCGGTCAG 60.159 50.000 1.90 0.00 0.00 3.51
5862 6441 1.837439 AGATATGAAAGGTGCCGGTCA 59.163 47.619 1.90 0.00 0.00 4.02
5863 6442 2.622064 AGATATGAAAGGTGCCGGTC 57.378 50.000 1.90 0.00 0.00 4.79
5864 6443 4.505039 GGATTAGATATGAAAGGTGCCGGT 60.505 45.833 1.90 0.00 0.00 5.28
5865 6444 4.003648 GGATTAGATATGAAAGGTGCCGG 58.996 47.826 0.00 0.00 0.00 6.13
5866 6445 4.641396 TGGATTAGATATGAAAGGTGCCG 58.359 43.478 0.00 0.00 0.00 5.69
5867 6446 6.959639 TTTGGATTAGATATGAAAGGTGCC 57.040 37.500 0.00 0.00 0.00 5.01
5870 6449 9.759473 CCCATATTTGGATTAGATATGAAAGGT 57.241 33.333 3.41 0.00 46.92 3.50
5871 6450 9.193806 CCCCATATTTGGATTAGATATGAAAGG 57.806 37.037 3.41 0.00 46.92 3.11
5872 6451 8.689972 GCCCCATATTTGGATTAGATATGAAAG 58.310 37.037 3.41 0.00 46.92 2.62
5873 6452 7.339212 CGCCCCATATTTGGATTAGATATGAAA 59.661 37.037 3.41 0.00 46.92 2.69
5874 6453 6.828273 CGCCCCATATTTGGATTAGATATGAA 59.172 38.462 3.41 0.00 46.92 2.57
5875 6454 6.356556 CGCCCCATATTTGGATTAGATATGA 58.643 40.000 3.41 0.00 46.92 2.15
5876 6455 5.009010 GCGCCCCATATTTGGATTAGATATG 59.991 44.000 3.41 0.00 46.92 1.78
5877 6456 5.133221 GCGCCCCATATTTGGATTAGATAT 58.867 41.667 3.41 0.00 46.92 1.63
5878 6457 4.523083 GCGCCCCATATTTGGATTAGATA 58.477 43.478 3.41 0.00 46.92 1.98
5879 6458 3.356290 GCGCCCCATATTTGGATTAGAT 58.644 45.455 3.41 0.00 46.92 1.98
5880 6459 2.554344 GGCGCCCCATATTTGGATTAGA 60.554 50.000 18.11 0.00 46.92 2.10
5881 6460 1.818674 GGCGCCCCATATTTGGATTAG 59.181 52.381 18.11 0.00 46.92 1.73
5882 6461 1.549037 GGGCGCCCCATATTTGGATTA 60.549 52.381 36.64 0.00 46.92 1.75
5883 6462 0.831711 GGGCGCCCCATATTTGGATT 60.832 55.000 36.64 0.00 46.92 3.01
5884 6463 1.228862 GGGCGCCCCATATTTGGAT 60.229 57.895 36.64 0.00 46.92 3.41
5885 6464 2.197324 GGGCGCCCCATATTTGGA 59.803 61.111 36.64 0.00 46.92 3.53
5886 6465 3.294493 CGGGCGCCCCATATTTGG 61.294 66.667 39.24 19.19 45.83 3.28
5887 6466 3.294493 CCGGGCGCCCCATATTTG 61.294 66.667 39.24 22.87 45.83 2.32
5888 6467 3.494254 TCCGGGCGCCCCATATTT 61.494 61.111 39.24 0.00 45.83 1.40
5889 6468 4.265056 GTCCGGGCGCCCCATATT 62.265 66.667 39.24 0.00 45.83 1.28
5938 6517 3.069946 AACATGGCGGGCATGTGG 61.070 61.111 39.60 21.34 41.85 4.17
5939 6518 2.182284 CAACATGGCGGGCATGTG 59.818 61.111 39.60 30.06 41.85 3.21
5940 6519 3.069946 CCAACATGGCGGGCATGT 61.070 61.111 35.77 35.77 44.25 3.21
5973 6552 3.069946 AACATGGCGGGCATGTGG 61.070 61.111 39.60 21.34 41.85 4.17
5974 6553 2.182284 CAACATGGCGGGCATGTG 59.818 61.111 39.60 30.06 41.85 3.21
5975 6554 3.069946 CCAACATGGCGGGCATGT 61.070 61.111 35.77 35.77 44.25 3.21
6002 6581 0.322187 ACGTTTCTATGTGGGGCCAC 60.322 55.000 4.39 0.00 46.33 5.01
6003 6582 0.035820 GACGTTTCTATGTGGGGCCA 60.036 55.000 4.39 0.00 0.00 5.36
6004 6583 0.746923 GGACGTTTCTATGTGGGGCC 60.747 60.000 0.00 0.00 0.00 5.80
6005 6584 1.087771 CGGACGTTTCTATGTGGGGC 61.088 60.000 0.00 0.00 0.00 5.80
6006 6585 0.533491 TCGGACGTTTCTATGTGGGG 59.467 55.000 0.00 0.00 0.00 4.96
6007 6586 2.373540 TTCGGACGTTTCTATGTGGG 57.626 50.000 0.00 0.00 0.00 4.61
6008 6587 3.120442 GGTTTTCGGACGTTTCTATGTGG 60.120 47.826 0.00 0.00 0.00 4.17
6009 6588 3.120442 GGGTTTTCGGACGTTTCTATGTG 60.120 47.826 0.00 0.00 0.00 3.21
6010 6589 3.069289 GGGTTTTCGGACGTTTCTATGT 58.931 45.455 0.00 0.00 0.00 2.29
6011 6590 2.093152 CGGGTTTTCGGACGTTTCTATG 59.907 50.000 0.00 0.00 0.00 2.23
6012 6591 2.340337 CGGGTTTTCGGACGTTTCTAT 58.660 47.619 0.00 0.00 0.00 1.98
6013 6592 1.782044 CGGGTTTTCGGACGTTTCTA 58.218 50.000 0.00 0.00 0.00 2.10
6014 6593 2.608640 CGGGTTTTCGGACGTTTCT 58.391 52.632 0.00 0.00 0.00 2.52
6032 6611 4.778143 AACATCAGTCGGGCCGCC 62.778 66.667 23.83 11.10 0.00 6.13
6033 6612 3.499737 CAACATCAGTCGGGCCGC 61.500 66.667 23.83 16.81 0.00 6.53
6034 6613 3.499737 GCAACATCAGTCGGGCCG 61.500 66.667 22.51 22.51 0.00 6.13
6035 6614 3.499737 CGCAACATCAGTCGGGCC 61.500 66.667 0.00 0.00 0.00 5.80
6036 6615 2.740714 GACGCAACATCAGTCGGGC 61.741 63.158 0.00 0.00 0.00 6.13
6037 6616 2.100631 GGACGCAACATCAGTCGGG 61.101 63.158 0.00 0.00 35.87 5.14
6038 6617 2.444624 CGGACGCAACATCAGTCGG 61.445 63.158 0.00 0.00 35.87 4.79
6039 6618 1.674611 GACGGACGCAACATCAGTCG 61.675 60.000 0.00 0.00 32.80 4.18
6040 6619 1.674611 CGACGGACGCAACATCAGTC 61.675 60.000 0.00 0.00 37.76 3.51
6041 6620 1.733041 CGACGGACGCAACATCAGT 60.733 57.895 0.00 0.00 34.51 3.41
6042 6621 3.072598 CGACGGACGCAACATCAG 58.927 61.111 0.00 0.00 34.51 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.