Multiple sequence alignment - TraesCS4A01G245200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G245200 chr4A 100.000 6293 0 0 1 6293 555509132 555515424 0.000000e+00 11622.0
1 TraesCS4A01G245200 chr4A 88.889 81 9 0 4590 4670 34567761 34567681 4.010000e-17 100.0
2 TraesCS4A01G245200 chr4B 94.290 5412 185 52 1 5339 64112776 64107416 0.000000e+00 8168.0
3 TraesCS4A01G245200 chr4B 94.025 636 22 5 5193 5817 64107418 64106788 0.000000e+00 950.0
4 TraesCS4A01G245200 chr4B 95.758 165 7 0 6025 6189 64106241 64106077 3.740000e-67 267.0
5 TraesCS4A01G245200 chr4B 93.846 130 8 0 5816 5945 64106721 64106592 4.980000e-46 196.0
6 TraesCS4A01G245200 chr4D 94.831 3173 83 38 2499 5650 44442934 44439822 0.000000e+00 4876.0
7 TraesCS4A01G245200 chr4D 97.297 1036 19 6 1466 2497 44445261 44444231 0.000000e+00 1749.0
8 TraesCS4A01G245200 chr4D 92.483 1051 55 12 1 1043 44446863 44445829 0.000000e+00 1482.0
9 TraesCS4A01G245200 chr4D 92.174 575 16 15 1008 1554 44445827 44445254 0.000000e+00 785.0
10 TraesCS4A01G245200 chr4D 82.488 217 21 12 5977 6189 44425921 44425718 2.330000e-39 174.0
11 TraesCS4A01G245200 chr4D 97.561 41 1 0 6202 6242 34660035 34659995 3.150000e-08 71.3
12 TraesCS4A01G245200 chr7A 73.798 416 66 25 4782 5181 55205357 55204969 2.380000e-24 124.0
13 TraesCS4A01G245200 chr7A 97.500 40 1 0 6202 6241 138361740 138361701 1.130000e-07 69.4
14 TraesCS4A01G245200 chr7B 88.889 81 9 0 4590 4670 263740065 263740145 4.010000e-17 100.0
15 TraesCS4A01G245200 chr7B 87.654 81 10 0 4590 4670 168311561 168311641 1.870000e-15 95.3
16 TraesCS4A01G245200 chr3A 88.889 81 9 0 4590 4670 20222436 20222516 4.010000e-17 100.0
17 TraesCS4A01G245200 chr3A 87.654 81 10 0 4590 4670 492688181 492688101 1.870000e-15 95.3
18 TraesCS4A01G245200 chr1A 88.889 81 9 0 4590 4670 209404494 209404414 4.010000e-17 100.0
19 TraesCS4A01G245200 chr1A 76.303 211 29 13 1748 1956 548416878 548417069 6.720000e-15 93.5
20 TraesCS4A01G245200 chr2D 87.654 81 10 0 4590 4670 582551819 582551739 1.870000e-15 95.3
21 TraesCS4A01G245200 chr7D 89.831 59 4 1 6202 6258 579338593 579338535 2.430000e-09 75.0
22 TraesCS4A01G245200 chr1D 97.561 41 1 0 6202 6242 275135694 275135734 3.150000e-08 71.3
23 TraesCS4A01G245200 chr1D 93.023 43 2 1 6199 6240 293590685 293590643 1.890000e-05 62.1
24 TraesCS4A01G245200 chr2A 95.349 43 2 0 6198 6240 3624453 3624411 1.130000e-07 69.4
25 TraesCS4A01G245200 chr2A 97.436 39 1 0 6202 6240 745788456 745788418 4.070000e-07 67.6
26 TraesCS4A01G245200 chr2A 95.122 41 0 2 6201 6240 776932010 776931971 5.270000e-06 63.9
27 TraesCS4A01G245200 chr5A 95.122 41 2 0 6202 6242 350237382 350237342 1.460000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G245200 chr4A 555509132 555515424 6292 False 11622.00 11622 100.00000 1 6293 1 chr4A.!!$F1 6292
1 TraesCS4A01G245200 chr4B 64106077 64112776 6699 True 2395.25 8168 94.47975 1 6189 4 chr4B.!!$R1 6188
2 TraesCS4A01G245200 chr4D 44439822 44446863 7041 True 2223.00 4876 94.19625 1 5650 4 chr4D.!!$R3 5649

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 463 0.881796 CTGTTCCGGGGCTTCTTTTC 59.118 55.000 0.0 0.0 0.0 2.29 F
1040 1073 1.123077 CCTCCAAGGGATCGTCATCA 58.877 55.000 0.0 0.0 0.0 3.07 F
2598 4076 0.907486 TGCTCAGTCCAAGATCAGGG 59.093 55.000 0.0 0.0 0.0 4.45 F
3496 4978 1.477558 CCCTCAGTGCTTCAGGTGTTT 60.478 52.381 0.0 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1658 1836 0.560688 TGGCCTTTCCCTTCCTTTGT 59.439 50.000 3.32 0.00 0.0 2.83 R
2729 4207 1.143073 ACCCAAGTCTTTCCGAGCTTT 59.857 47.619 0.00 0.00 0.0 3.51 R
4542 6025 0.788391 CACACCGCCGAACTAGTTTC 59.212 55.000 10.02 2.52 0.0 2.78 R
5342 6965 1.770294 TTGAACCAAAAAGCCCTCGT 58.230 45.000 0.00 0.00 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 82 2.960384 GGAGTTAGTTAGAGGGGAGAGC 59.040 54.545 0.00 0.00 0.00 4.09
94 102 2.516460 TCGCTCGCCTCTACCTCC 60.516 66.667 0.00 0.00 0.00 4.30
156 176 4.200283 CACGCTCTCCTCGCCTCC 62.200 72.222 0.00 0.00 0.00 4.30
165 185 1.764054 CCTCGCCTCCTTCTCCCAT 60.764 63.158 0.00 0.00 0.00 4.00
181 201 1.521681 CATCCGTTTCGCCTCCCTC 60.522 63.158 0.00 0.00 0.00 4.30
189 209 2.042435 CGCCTCCCTCCTCTTCCT 60.042 66.667 0.00 0.00 0.00 3.36
304 329 3.664107 TCTTGCGGTTCATATAGCATCC 58.336 45.455 0.00 0.00 39.50 3.51
305 330 2.472695 TGCGGTTCATATAGCATCCC 57.527 50.000 0.00 0.00 34.39 3.85
306 331 1.696884 TGCGGTTCATATAGCATCCCA 59.303 47.619 0.00 0.00 34.39 4.37
307 332 2.076863 GCGGTTCATATAGCATCCCAC 58.923 52.381 0.00 0.00 0.00 4.61
356 381 1.699656 CTGCTGAATCCAAGGTCGCG 61.700 60.000 0.00 0.00 0.00 5.87
370 395 4.430765 CGCGGGCGTGTACCTCTT 62.431 66.667 4.64 0.00 34.35 2.85
389 414 3.077695 TCTTCTTCCCTGAGGTAAGAGGT 59.922 47.826 14.09 0.00 33.58 3.85
407 432 1.821136 GGTCATGGCTTTCCCTTTCTG 59.179 52.381 0.00 0.00 0.00 3.02
409 434 2.751806 GTCATGGCTTTCCCTTTCTGAG 59.248 50.000 0.00 0.00 0.00 3.35
438 463 0.881796 CTGTTCCGGGGCTTCTTTTC 59.118 55.000 0.00 0.00 0.00 2.29
498 524 3.938963 TCCACCAAAATATCTTGTCGAGC 59.061 43.478 0.00 0.00 0.00 5.03
573 600 4.154737 TGTTCCATTTCAAAGCAGATCTCG 59.845 41.667 0.00 0.00 0.00 4.04
589 616 1.208052 TCTCGCCTAATTGCTTGCTCT 59.792 47.619 0.00 0.00 0.00 4.09
598 625 5.877012 CCTAATTGCTTGCTCTAAGTTCTCA 59.123 40.000 0.00 0.00 38.70 3.27
615 642 7.678947 AGTTCTCAATAAATTCTGTGAGTGG 57.321 36.000 10.37 0.00 38.87 4.00
616 643 6.150140 AGTTCTCAATAAATTCTGTGAGTGGC 59.850 38.462 10.37 0.00 38.87 5.01
617 644 4.631377 TCTCAATAAATTCTGTGAGTGGCG 59.369 41.667 10.37 0.00 38.87 5.69
618 645 4.574892 TCAATAAATTCTGTGAGTGGCGA 58.425 39.130 0.00 0.00 0.00 5.54
619 646 5.000591 TCAATAAATTCTGTGAGTGGCGAA 58.999 37.500 0.00 0.00 0.00 4.70
620 647 4.946784 ATAAATTCTGTGAGTGGCGAAC 57.053 40.909 0.00 0.00 0.00 3.95
621 648 2.550830 AATTCTGTGAGTGGCGAACT 57.449 45.000 0.00 0.00 43.85 3.01
746 779 5.836821 GGGAAGTATGAAACAAGATTCCC 57.163 43.478 4.46 4.46 45.46 3.97
751 784 4.946157 AGTATGAAACAAGATTCCCAGCAG 59.054 41.667 0.00 0.00 0.00 4.24
788 821 6.875948 TCAGTAACATATGCACTGTTTGTT 57.124 33.333 25.74 12.30 40.44 2.83
797 830 4.150897 TGCACTGTTTGTTTCCTAGAGT 57.849 40.909 0.00 0.00 0.00 3.24
798 831 5.284861 TGCACTGTTTGTTTCCTAGAGTA 57.715 39.130 0.00 0.00 0.00 2.59
799 832 5.865085 TGCACTGTTTGTTTCCTAGAGTAT 58.135 37.500 0.00 0.00 0.00 2.12
830 863 6.013725 TGCCCACTATTGAAATCTATACGGAT 60.014 38.462 0.00 0.00 0.00 4.18
898 931 2.149973 ATCCAACTTCCTCCCAATGC 57.850 50.000 0.00 0.00 0.00 3.56
900 933 2.274542 TCCAACTTCCTCCCAATGCTA 58.725 47.619 0.00 0.00 0.00 3.49
915 948 5.063817 CCCAATGCTAGCTTTTAATGCAAAC 59.936 40.000 17.23 0.00 37.20 2.93
1040 1073 1.123077 CCTCCAAGGGATCGTCATCA 58.877 55.000 0.00 0.00 0.00 3.07
1043 1076 1.341209 TCCAAGGGATCGTCATCATCG 59.659 52.381 0.00 0.00 0.00 3.84
1125 1194 3.010584 AGAAATACATGGGTTGGCTGAGT 59.989 43.478 0.00 0.00 0.00 3.41
1404 1500 7.067372 TGACAAATCACATGGGATAAATCAGTC 59.933 37.037 11.76 12.67 0.00 3.51
1464 1561 4.398319 AGTGAGGGATCGAACAATTTGTT 58.602 39.130 14.42 14.42 44.37 2.83
1508 1686 8.143193 CACTGCATTTTTATATAAATCAGGGCA 58.857 33.333 19.74 17.18 32.76 5.36
1579 1757 3.572255 TCACTGTTGCTAATTTGGTTCCC 59.428 43.478 0.00 0.00 0.00 3.97
1594 1772 6.894735 TTGGTTCCCAATTATACTGTAGGA 57.105 37.500 0.00 0.00 38.75 2.94
1774 1952 8.410141 TGTGTCATTAAAGTTTCTTAGTTTGGG 58.590 33.333 0.00 0.00 31.84 4.12
2260 2440 8.114331 ACACATGCATATATATTTGGTTGAGG 57.886 34.615 0.00 0.00 0.00 3.86
2598 4076 0.907486 TGCTCAGTCCAAGATCAGGG 59.093 55.000 0.00 0.00 0.00 4.45
2678 4156 9.345517 CTGAAAAATCGTTCATGTAACAATGAT 57.654 29.630 0.00 0.00 36.92 2.45
2729 4207 4.897140 AGCGTATGGGTTGTAAAAGTGTA 58.103 39.130 0.00 0.00 0.00 2.90
2908 4386 6.262433 ATGTAAACATATGCGTTGTCCCGC 62.262 45.833 1.58 0.00 43.57 6.13
2997 4475 3.071602 AGACCTTTGACCATCCATATCCG 59.928 47.826 0.00 0.00 0.00 4.18
3203 4681 1.535028 TGCTGCCATTGTTAAGTCACG 59.465 47.619 0.00 0.00 0.00 4.35
3220 4698 2.035961 TCACGCTCTTATACCTGCCATC 59.964 50.000 0.00 0.00 0.00 3.51
3376 4857 7.639850 GGAGCTTCTTTGTTTTGCATTTTTAAC 59.360 33.333 0.00 0.00 0.00 2.01
3389 4870 6.876155 TGCATTTTTAACAGATATGGTGCAT 58.124 32.000 0.00 0.00 34.37 3.96
3396 4878 7.926674 TTAACAGATATGGTGCATCATATGG 57.073 36.000 32.18 24.98 39.60 2.74
3496 4978 1.477558 CCCTCAGTGCTTCAGGTGTTT 60.478 52.381 0.00 0.00 0.00 2.83
3627 5109 7.310664 CAAGTTTGCAGTACATGAAGATCATT 58.689 34.615 0.00 0.00 34.28 2.57
3915 5398 2.878406 AGTTGTGAACGAATGGAGGTTG 59.122 45.455 0.00 0.00 36.23 3.77
3956 5439 7.542130 CCAATCAGAAATTAACTGGCAGTTTAC 59.458 37.037 35.13 20.99 39.51 2.01
3962 5445 7.502561 AGAAATTAACTGGCAGTTTACTTCAGT 59.497 33.333 35.13 15.48 39.51 3.41
3963 5446 7.582667 AATTAACTGGCAGTTTACTTCAGTT 57.417 32.000 35.13 17.31 43.68 3.16
3964 5447 8.685838 AATTAACTGGCAGTTTACTTCAGTTA 57.314 30.769 35.13 20.22 42.52 2.24
3965 5448 7.486802 TTAACTGGCAGTTTACTTCAGTTAC 57.513 36.000 35.13 0.00 42.75 2.50
3966 5449 5.031066 ACTGGCAGTTTACTTCAGTTACA 57.969 39.130 15.88 0.00 35.65 2.41
3967 5450 5.057149 ACTGGCAGTTTACTTCAGTTACAG 58.943 41.667 15.88 0.00 35.65 2.74
3968 5451 4.385825 TGGCAGTTTACTTCAGTTACAGG 58.614 43.478 0.00 0.00 0.00 4.00
3969 5452 3.188667 GGCAGTTTACTTCAGTTACAGGC 59.811 47.826 0.00 0.00 0.00 4.85
4003 5486 7.644945 TGCTTCAATTCATAGTGCAAATATTCG 59.355 33.333 0.00 0.00 0.00 3.34
4016 5499 5.519566 TGCAAATATTCGCATTTGATTGGTC 59.480 36.000 16.32 3.66 44.96 4.02
4030 5513 7.579589 TTTGATTGGTCTAATGAATTTTGCG 57.420 32.000 0.00 0.00 0.00 4.85
4542 6025 3.668447 AGACATTTCTACAGCACCACAG 58.332 45.455 0.00 0.00 0.00 3.66
4581 6064 4.035558 TGTGAAGTGACTGCAATTCTTGTC 59.964 41.667 0.00 0.00 46.27 3.18
4717 6200 4.385825 AGAAGTCCTTTGTTGCGAATGTA 58.614 39.130 0.00 0.00 0.00 2.29
4804 6287 1.596603 TGATGCATGCATACCTTCGG 58.403 50.000 32.27 0.00 36.70 4.30
5098 6581 1.261619 CAACAGCGACACCTTCTTCAC 59.738 52.381 0.00 0.00 0.00 3.18
5108 6591 3.395941 ACACCTTCTTCACCATCTTCCTT 59.604 43.478 0.00 0.00 0.00 3.36
5181 6664 2.086054 AGCACCAGATCGAAACAGAC 57.914 50.000 0.00 0.00 0.00 3.51
5340 6963 2.355010 GCATGGGGCATATCCTATCC 57.645 55.000 0.00 0.00 43.97 2.59
5341 6964 1.849039 GCATGGGGCATATCCTATCCT 59.151 52.381 0.00 0.00 43.97 3.24
5342 6965 3.048600 GCATGGGGCATATCCTATCCTA 58.951 50.000 0.00 0.00 43.97 2.94
5343 6966 3.181450 GCATGGGGCATATCCTATCCTAC 60.181 52.174 0.00 0.00 43.97 3.18
5471 7110 8.677300 TCCTGTTGTGCTTTAGATATGAATTTC 58.323 33.333 0.00 0.00 0.00 2.17
5494 7133 4.891756 CCCAAGGTGATAAGCATGAGAAAT 59.108 41.667 0.00 0.00 0.00 2.17
5631 7274 5.865552 CAGTTCCATTTTTATGTCTTGCCTG 59.134 40.000 0.00 0.00 0.00 4.85
5656 7299 4.521130 TTTCGACATTAGTGACAGAGCT 57.479 40.909 0.00 0.00 0.00 4.09
5691 7334 6.638610 CATGTCAAGGGCCAATTGTAAAATA 58.361 36.000 16.89 0.55 0.00 1.40
5694 7337 6.212388 TGTCAAGGGCCAATTGTAAAATATGT 59.788 34.615 16.89 0.00 0.00 2.29
5757 7402 9.914834 ATTTACTAAAAGATACACCTGGCATTA 57.085 29.630 0.00 0.00 0.00 1.90
5791 7439 0.615827 AAAGAGGGAAATGGCTGGCC 60.616 55.000 4.43 4.43 0.00 5.36
5825 7541 0.183492 GATGCCCCTGCTCCACAATA 59.817 55.000 0.00 0.00 38.71 1.90
5868 7584 4.637534 GCTGTGACAACTCCACAATATGAT 59.362 41.667 0.00 0.00 43.07 2.45
5874 7590 5.188434 ACAACTCCACAATATGATCCTGTG 58.812 41.667 7.14 7.14 40.13 3.66
5880 7596 4.201657 CACAATATGATCCTGTGCCAAGA 58.798 43.478 0.00 0.00 34.55 3.02
5889 7605 2.747460 GTGCCAAGATCTGCCGCA 60.747 61.111 0.00 1.36 0.00 5.69
5911 7627 5.775686 CAGAATGTGTCATTGGAATTGTGT 58.224 37.500 0.00 0.00 0.00 3.72
5941 7657 0.109153 ACCATGAACAGTGCTGCTCA 59.891 50.000 7.61 7.61 39.62 4.26
5945 7661 2.259266 TGAACAGTGCTGCTCATTCA 57.741 45.000 13.81 13.81 31.49 2.57
5947 7663 3.151554 TGAACAGTGCTGCTCATTCAAT 58.848 40.909 14.85 0.00 31.49 2.57
5948 7664 4.325972 TGAACAGTGCTGCTCATTCAATA 58.674 39.130 14.85 0.00 31.49 1.90
5949 7665 4.393990 TGAACAGTGCTGCTCATTCAATAG 59.606 41.667 14.85 0.00 31.49 1.73
5950 7666 3.947868 ACAGTGCTGCTCATTCAATAGT 58.052 40.909 0.00 0.00 0.00 2.12
5951 7667 5.089970 ACAGTGCTGCTCATTCAATAGTA 57.910 39.130 0.00 0.00 0.00 1.82
5952 7668 5.491070 ACAGTGCTGCTCATTCAATAGTAA 58.509 37.500 0.00 0.00 0.00 2.24
5953 7669 6.118170 ACAGTGCTGCTCATTCAATAGTAAT 58.882 36.000 0.00 0.00 0.00 1.89
5954 7670 6.600822 ACAGTGCTGCTCATTCAATAGTAATT 59.399 34.615 0.00 0.00 0.00 1.40
5955 7671 7.121759 ACAGTGCTGCTCATTCAATAGTAATTT 59.878 33.333 0.00 0.00 0.00 1.82
5956 7672 8.615211 CAGTGCTGCTCATTCAATAGTAATTTA 58.385 33.333 0.00 0.00 0.00 1.40
5958 7674 9.787532 GTGCTGCTCATTCAATAGTAATTTAAA 57.212 29.630 0.00 0.00 0.00 1.52
6024 7740 9.747898 AAAGTATATGATGGGTTAACAAGAACA 57.252 29.630 8.10 1.51 0.00 3.18
6025 7741 9.747898 AAGTATATGATGGGTTAACAAGAACAA 57.252 29.630 8.10 0.00 0.00 2.83
6026 7742 9.747898 AGTATATGATGGGTTAACAAGAACAAA 57.252 29.630 8.10 0.00 0.00 2.83
6029 7745 9.927668 ATATGATGGGTTAACAAGAACAAAAAG 57.072 29.630 8.10 0.00 0.00 2.27
6201 8188 8.532186 TGTGCCTCATATTAACATTATTTGGT 57.468 30.769 0.00 0.00 0.00 3.67
6202 8189 9.634021 TGTGCCTCATATTAACATTATTTGGTA 57.366 29.630 0.00 0.00 0.00 3.25
6203 8190 9.893305 GTGCCTCATATTAACATTATTTGGTAC 57.107 33.333 0.00 0.00 0.00 3.34
6204 8191 9.860650 TGCCTCATATTAACATTATTTGGTACT 57.139 29.630 0.00 0.00 0.00 2.73
6211 8198 7.852971 TTAACATTATTTGGTACTCCTTCCG 57.147 36.000 0.00 0.00 34.23 4.30
6212 8199 5.431179 ACATTATTTGGTACTCCTTCCGT 57.569 39.130 0.00 0.00 34.23 4.69
6213 8200 5.812286 ACATTATTTGGTACTCCTTCCGTT 58.188 37.500 0.00 0.00 34.23 4.44
6214 8201 6.243148 ACATTATTTGGTACTCCTTCCGTTT 58.757 36.000 0.00 0.00 34.23 3.60
6215 8202 6.373495 ACATTATTTGGTACTCCTTCCGTTTC 59.627 38.462 0.00 0.00 34.23 2.78
6216 8203 3.842007 TTTGGTACTCCTTCCGTTTCA 57.158 42.857 0.00 0.00 34.23 2.69
6217 8204 3.842007 TTGGTACTCCTTCCGTTTCAA 57.158 42.857 0.00 0.00 34.23 2.69
6218 8205 3.842007 TGGTACTCCTTCCGTTTCAAA 57.158 42.857 0.00 0.00 34.23 2.69
6219 8206 4.360951 TGGTACTCCTTCCGTTTCAAAT 57.639 40.909 0.00 0.00 34.23 2.32
6220 8207 4.721132 TGGTACTCCTTCCGTTTCAAATT 58.279 39.130 0.00 0.00 34.23 1.82
6221 8208 5.867330 TGGTACTCCTTCCGTTTCAAATTA 58.133 37.500 0.00 0.00 34.23 1.40
6222 8209 5.702209 TGGTACTCCTTCCGTTTCAAATTAC 59.298 40.000 0.00 0.00 34.23 1.89
6223 8210 5.936372 GGTACTCCTTCCGTTTCAAATTACT 59.064 40.000 0.00 0.00 0.00 2.24
6224 8211 6.429078 GGTACTCCTTCCGTTTCAAATTACTT 59.571 38.462 0.00 0.00 0.00 2.24
6225 8212 6.313744 ACTCCTTCCGTTTCAAATTACTTG 57.686 37.500 0.00 0.00 36.25 3.16
6226 8213 5.826208 ACTCCTTCCGTTTCAAATTACTTGT 59.174 36.000 0.00 0.00 36.34 3.16
6227 8214 6.017357 ACTCCTTCCGTTTCAAATTACTTGTC 60.017 38.462 0.00 0.00 36.34 3.18
6228 8215 5.049954 TCCTTCCGTTTCAAATTACTTGTCG 60.050 40.000 0.00 0.00 36.34 4.35
6229 8216 5.277634 CCTTCCGTTTCAAATTACTTGTCGT 60.278 40.000 0.00 0.00 36.34 4.34
6230 8217 5.085636 TCCGTTTCAAATTACTTGTCGTG 57.914 39.130 0.00 0.00 36.34 4.35
6231 8218 4.024725 TCCGTTTCAAATTACTTGTCGTGG 60.025 41.667 0.00 0.00 36.34 4.94
6232 8219 4.260866 CCGTTTCAAATTACTTGTCGTGGT 60.261 41.667 0.00 0.00 36.34 4.16
6233 8220 5.267776 CGTTTCAAATTACTTGTCGTGGTT 58.732 37.500 0.00 0.00 36.34 3.67
6234 8221 5.740099 CGTTTCAAATTACTTGTCGTGGTTT 59.260 36.000 0.00 0.00 36.34 3.27
6235 8222 6.251801 CGTTTCAAATTACTTGTCGTGGTTTT 59.748 34.615 0.00 0.00 36.34 2.43
6236 8223 7.428761 CGTTTCAAATTACTTGTCGTGGTTTTA 59.571 33.333 0.00 0.00 36.34 1.52
6237 8224 8.739461 GTTTCAAATTACTTGTCGTGGTTTTAG 58.261 33.333 0.00 0.00 36.34 1.85
6238 8225 7.556733 TCAAATTACTTGTCGTGGTTTTAGT 57.443 32.000 0.00 0.00 36.34 2.24
6239 8226 7.987649 TCAAATTACTTGTCGTGGTTTTAGTT 58.012 30.769 0.00 0.00 36.34 2.24
6240 8227 8.124199 TCAAATTACTTGTCGTGGTTTTAGTTC 58.876 33.333 0.00 0.00 36.34 3.01
6241 8228 7.556733 AATTACTTGTCGTGGTTTTAGTTCA 57.443 32.000 0.00 0.00 0.00 3.18
6242 8229 7.739498 ATTACTTGTCGTGGTTTTAGTTCAT 57.261 32.000 0.00 0.00 0.00 2.57
6243 8230 5.418310 ACTTGTCGTGGTTTTAGTTCATG 57.582 39.130 0.00 0.00 0.00 3.07
6244 8231 4.274950 ACTTGTCGTGGTTTTAGTTCATGG 59.725 41.667 0.00 0.00 0.00 3.66
6245 8232 4.074627 TGTCGTGGTTTTAGTTCATGGA 57.925 40.909 0.00 0.00 0.00 3.41
6246 8233 4.452825 TGTCGTGGTTTTAGTTCATGGAA 58.547 39.130 0.00 0.00 0.00 3.53
6247 8234 4.273969 TGTCGTGGTTTTAGTTCATGGAAC 59.726 41.667 0.94 0.94 42.25 3.62
6248 8235 3.495377 TCGTGGTTTTAGTTCATGGAACG 59.505 43.478 3.69 0.00 45.96 3.95
6249 8236 3.364565 CGTGGTTTTAGTTCATGGAACGG 60.365 47.826 3.69 0.00 45.96 4.44
6250 8237 3.816523 GTGGTTTTAGTTCATGGAACGGA 59.183 43.478 3.69 0.00 45.96 4.69
6251 8238 4.069304 TGGTTTTAGTTCATGGAACGGAG 58.931 43.478 3.69 0.00 45.96 4.63
6252 8239 3.439129 GGTTTTAGTTCATGGAACGGAGG 59.561 47.826 3.69 0.00 45.96 4.30
6253 8240 3.343941 TTTAGTTCATGGAACGGAGGG 57.656 47.619 3.69 0.00 45.96 4.30
6254 8241 2.241281 TAGTTCATGGAACGGAGGGA 57.759 50.000 3.69 0.00 45.96 4.20
6255 8242 0.905357 AGTTCATGGAACGGAGGGAG 59.095 55.000 3.69 0.00 45.96 4.30
6256 8243 0.613777 GTTCATGGAACGGAGGGAGT 59.386 55.000 0.00 0.00 32.81 3.85
6257 8244 1.829222 GTTCATGGAACGGAGGGAGTA 59.171 52.381 0.00 0.00 32.81 2.59
6258 8245 1.481871 TCATGGAACGGAGGGAGTAC 58.518 55.000 0.00 0.00 0.00 2.73
6259 8246 1.191535 CATGGAACGGAGGGAGTACA 58.808 55.000 0.00 0.00 0.00 2.90
6260 8247 1.762957 CATGGAACGGAGGGAGTACAT 59.237 52.381 0.00 0.00 0.00 2.29
6261 8248 1.191535 TGGAACGGAGGGAGTACATG 58.808 55.000 0.00 0.00 0.00 3.21
6262 8249 1.192428 GGAACGGAGGGAGTACATGT 58.808 55.000 2.69 2.69 0.00 3.21
6263 8250 1.136500 GGAACGGAGGGAGTACATGTC 59.864 57.143 0.00 0.00 0.00 3.06
6264 8251 2.100989 GAACGGAGGGAGTACATGTCT 58.899 52.381 0.00 0.00 0.00 3.41
6265 8252 3.285484 GAACGGAGGGAGTACATGTCTA 58.715 50.000 0.00 0.00 0.00 2.59
6266 8253 2.933573 ACGGAGGGAGTACATGTCTAG 58.066 52.381 0.00 0.00 0.00 2.43
6267 8254 2.241685 ACGGAGGGAGTACATGTCTAGT 59.758 50.000 0.00 0.00 0.00 2.57
6268 8255 2.619177 CGGAGGGAGTACATGTCTAGTG 59.381 54.545 0.00 0.00 0.00 2.74
6269 8256 2.362717 GGAGGGAGTACATGTCTAGTGC 59.637 54.545 0.00 0.00 0.00 4.40
6270 8257 3.292460 GAGGGAGTACATGTCTAGTGCT 58.708 50.000 0.00 0.00 34.56 4.40
6271 8258 3.702045 GAGGGAGTACATGTCTAGTGCTT 59.298 47.826 0.00 0.00 31.94 3.91
6272 8259 3.449018 AGGGAGTACATGTCTAGTGCTTG 59.551 47.826 0.00 0.00 31.94 4.01
6273 8260 3.195825 GGGAGTACATGTCTAGTGCTTGT 59.804 47.826 0.00 11.10 31.94 3.16
6274 8261 4.401519 GGGAGTACATGTCTAGTGCTTGTA 59.598 45.833 0.00 9.75 31.94 2.41
6275 8262 5.069251 GGGAGTACATGTCTAGTGCTTGTAT 59.931 44.000 0.00 7.61 31.94 2.29
6276 8263 6.210078 GGAGTACATGTCTAGTGCTTGTATC 58.790 44.000 0.00 12.39 31.94 2.24
6277 8264 6.039941 GGAGTACATGTCTAGTGCTTGTATCT 59.960 42.308 0.00 12.82 31.94 1.98
6278 8265 7.411486 AGTACATGTCTAGTGCTTGTATCTT 57.589 36.000 0.00 5.99 32.01 2.40
6279 8266 8.521170 AGTACATGTCTAGTGCTTGTATCTTA 57.479 34.615 0.00 0.00 32.01 2.10
6280 8267 9.137459 AGTACATGTCTAGTGCTTGTATCTTAT 57.863 33.333 0.00 0.00 32.01 1.73
6281 8268 9.751542 GTACATGTCTAGTGCTTGTATCTTATT 57.248 33.333 0.00 0.00 32.01 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 82 4.253257 GGTAGAGGCGAGCGACGG 62.253 72.222 0.00 0.00 42.83 4.79
88 96 0.689745 CGAATCTGGGGGTGGAGGTA 60.690 60.000 0.00 0.00 0.00 3.08
94 102 1.185315 AAAATGCGAATCTGGGGGTG 58.815 50.000 0.00 0.00 0.00 4.61
156 176 1.090052 GGCGAAACGGATGGGAGAAG 61.090 60.000 0.00 0.00 0.00 2.85
165 185 3.387947 GGAGGGAGGCGAAACGGA 61.388 66.667 0.00 0.00 0.00 4.69
221 241 3.589654 CTGCTTGTCGGCCGGAGAA 62.590 63.158 27.83 14.56 0.00 2.87
270 291 1.576421 GCAAGAACTTCCAGCCACG 59.424 57.895 0.00 0.00 0.00 4.94
304 329 4.012895 GGAACTGCGCGTGTGTGG 62.013 66.667 8.43 0.00 0.00 4.17
305 330 3.227372 CTGGAACTGCGCGTGTGTG 62.227 63.158 8.43 0.00 0.00 3.82
306 331 2.967076 CTGGAACTGCGCGTGTGT 60.967 61.111 8.43 0.92 0.00 3.72
307 332 4.374702 GCTGGAACTGCGCGTGTG 62.375 66.667 8.43 0.19 44.58 3.82
356 381 0.108281 GGAAGAAGAGGTACACGCCC 60.108 60.000 0.00 0.00 0.00 6.13
361 386 2.821437 CCTCAGGGAAGAAGAGGTACA 58.179 52.381 0.00 0.00 43.11 2.90
370 395 2.382305 TGACCTCTTACCTCAGGGAAGA 59.618 50.000 18.27 18.27 33.57 2.87
389 414 2.291153 CCTCAGAAAGGGAAAGCCATGA 60.291 50.000 0.00 0.00 42.03 3.07
407 432 0.804989 CGGAACAGCATTGGAACCTC 59.195 55.000 0.00 0.00 0.00 3.85
409 434 1.595093 CCCGGAACAGCATTGGAACC 61.595 60.000 0.73 0.00 0.00 3.62
498 524 2.981784 TCATTATCCATCTGAGGGTGGG 59.018 50.000 8.37 0.00 36.15 4.61
573 600 4.637977 AGAACTTAGAGCAAGCAATTAGGC 59.362 41.667 0.00 0.00 37.83 3.93
589 616 9.219603 CCACTCACAGAATTTATTGAGAACTTA 57.780 33.333 14.63 0.00 38.19 2.24
598 625 5.003804 AGTTCGCCACTCACAGAATTTATT 58.996 37.500 0.00 0.00 0.00 1.40
614 641 0.459585 TAGACAATCGCCAGTTCGCC 60.460 55.000 0.00 0.00 0.00 5.54
615 642 0.924090 CTAGACAATCGCCAGTTCGC 59.076 55.000 0.00 0.00 0.00 4.70
616 643 1.134367 TCCTAGACAATCGCCAGTTCG 59.866 52.381 0.00 0.00 0.00 3.95
617 644 2.930682 GTTCCTAGACAATCGCCAGTTC 59.069 50.000 0.00 0.00 0.00 3.01
618 645 2.301870 TGTTCCTAGACAATCGCCAGTT 59.698 45.455 0.00 0.00 0.00 3.16
619 646 1.899814 TGTTCCTAGACAATCGCCAGT 59.100 47.619 0.00 0.00 0.00 4.00
620 647 2.672961 TGTTCCTAGACAATCGCCAG 57.327 50.000 0.00 0.00 0.00 4.85
621 648 2.419990 CCATGTTCCTAGACAATCGCCA 60.420 50.000 0.00 0.00 32.47 5.69
746 779 5.900425 ACTGAATATCTGTGACTACTGCTG 58.100 41.667 0.00 0.00 0.00 4.41
788 821 4.833380 GTGGGCACTGATATACTCTAGGAA 59.167 45.833 0.00 0.00 0.00 3.36
797 830 7.977818 AGATTTCAATAGTGGGCACTGATATA 58.022 34.615 0.00 0.00 42.52 0.86
798 831 6.845908 AGATTTCAATAGTGGGCACTGATAT 58.154 36.000 0.00 0.00 42.52 1.63
799 832 6.252599 AGATTTCAATAGTGGGCACTGATA 57.747 37.500 0.00 0.00 42.52 2.15
845 878 6.954102 TCTAGGCCTGCATCTCAATTAGTATA 59.046 38.462 17.99 0.00 0.00 1.47
854 887 2.131405 GCTCTAGGCCTGCATCTCA 58.869 57.895 17.99 0.00 34.27 3.27
879 912 1.642762 AGCATTGGGAGGAAGTTGGAT 59.357 47.619 0.00 0.00 0.00 3.41
881 914 2.648059 CTAGCATTGGGAGGAAGTTGG 58.352 52.381 0.00 0.00 0.00 3.77
898 931 8.579682 AGTTTCTTGTTTGCATTAAAAGCTAG 57.420 30.769 0.00 0.00 0.00 3.42
900 933 7.041107 TGAGTTTCTTGTTTGCATTAAAAGCT 58.959 30.769 0.00 0.00 0.00 3.74
915 948 1.534595 GACCTGCAGCTGAGTTTCTTG 59.465 52.381 20.43 1.19 0.00 3.02
1040 1073 9.994432 GATGAAAATCTATTTTGTTCAGTCGAT 57.006 29.630 5.44 0.00 39.86 3.59
1170 1239 2.549349 GCCTTCACTAAAGTTCCCGTCA 60.549 50.000 0.00 0.00 32.69 4.35
1315 1411 3.996150 AGGAAGCGCATGATAAAATGG 57.004 42.857 11.47 0.00 0.00 3.16
1364 1460 4.512944 TGATTTGTCACAGAGAAGAGCAAC 59.487 41.667 0.00 0.00 0.00 4.17
1404 1500 5.469479 AGCATTCAATTTAAACTTCCCACG 58.531 37.500 0.00 0.00 0.00 4.94
1464 1561 3.822735 CAGTGGCTCCTGAAAAATCAAGA 59.177 43.478 0.00 0.00 34.23 3.02
1468 1565 1.888512 TGCAGTGGCTCCTGAAAAATC 59.111 47.619 8.62 0.00 41.91 2.17
1508 1686 3.071479 GGAATCATGTACCACGTTGTGT 58.929 45.455 1.91 0.00 0.00 3.72
1579 1757 7.877612 TGGCATGTGTATCCTACAGTATAATTG 59.122 37.037 0.00 0.00 39.77 2.32
1594 1772 3.954200 TCATTGTCACTGGCATGTGTAT 58.046 40.909 14.00 6.62 38.90 2.29
1658 1836 0.560688 TGGCCTTTCCCTTCCTTTGT 59.439 50.000 3.32 0.00 0.00 2.83
1774 1952 6.516718 TGCTCATTAACCTAGAACTGCTATC 58.483 40.000 0.00 0.00 0.00 2.08
1971 2149 4.202070 GCTGGAGTACTATCTGAGTGAACC 60.202 50.000 0.00 0.00 39.39 3.62
2090 2268 5.476091 ACAAACTTTTCCAAGTCCACAAA 57.524 34.783 0.00 0.00 42.89 2.83
2598 4076 1.921869 ATCCCCGGTCCCAATCACAC 61.922 60.000 0.00 0.00 0.00 3.82
2729 4207 1.143073 ACCCAAGTCTTTCCGAGCTTT 59.857 47.619 0.00 0.00 0.00 3.51
3102 4580 6.690957 TGCAGTTAAATTTCGAAAAGACTGTG 59.309 34.615 27.66 18.73 36.53 3.66
3203 4681 4.342862 TTCAGATGGCAGGTATAAGAGC 57.657 45.455 0.00 0.00 0.00 4.09
3220 4698 4.321601 ACTCGAGGAGACAACTGATTTCAG 60.322 45.833 18.41 6.03 40.28 3.02
3273 4751 1.071699 TCTGAGAACCCAAGGTTTCCG 59.928 52.381 0.00 0.00 46.95 4.30
3376 4857 5.742063 AGTCCATATGATGCACCATATCTG 58.258 41.667 10.86 5.77 37.57 2.90
3389 4870 5.428457 ACAAACCCTACATGAGTCCATATGA 59.572 40.000 3.65 0.00 0.00 2.15
3396 4878 2.744202 CAGCACAAACCCTACATGAGTC 59.256 50.000 0.00 0.00 0.00 3.36
3496 4978 3.118298 TGATATTGGCTCACTGCAAGCTA 60.118 43.478 8.68 0.00 45.15 3.32
3969 5452 6.484540 CACTATGAATTGAAGCAGCTGTAAG 58.515 40.000 16.64 0.00 0.00 2.34
4003 5486 7.906527 GCAAAATTCATTAGACCAATCAAATGC 59.093 33.333 0.00 0.00 30.99 3.56
4016 5499 7.816945 AAATGGAAGACGCAAAATTCATTAG 57.183 32.000 0.00 0.00 0.00 1.73
4468 5951 6.073385 GGTCGTCTCGATATCTGTGTAATGTA 60.073 42.308 0.34 0.00 38.42 2.29
4469 5952 5.277876 GGTCGTCTCGATATCTGTGTAATGT 60.278 44.000 0.34 0.00 38.42 2.71
4472 5955 4.193865 TGGTCGTCTCGATATCTGTGTAA 58.806 43.478 0.34 0.00 38.42 2.41
4542 6025 0.788391 CACACCGCCGAACTAGTTTC 59.212 55.000 10.02 2.52 0.00 2.78
4581 6064 6.655078 ATTTACCTTGGCAAAGCATATAGG 57.345 37.500 0.00 0.00 31.51 2.57
4717 6200 6.817765 AATCAGTGGAAATCAAACATACGT 57.182 33.333 0.00 0.00 0.00 3.57
4804 6287 7.031975 AGACACGTACAATAGTACCTTTAAGC 58.968 38.462 0.00 0.00 46.25 3.09
5098 6581 3.259123 CCCTTTTTCACCAAGGAAGATGG 59.741 47.826 0.00 0.00 43.32 3.51
5108 6591 4.159506 CAGTCTTTTCACCCTTTTTCACCA 59.840 41.667 0.00 0.00 0.00 4.17
5111 6594 5.261216 AGTCAGTCTTTTCACCCTTTTTCA 58.739 37.500 0.00 0.00 0.00 2.69
5181 6664 4.384978 CCATCTCCATATATTGCAGAGGGG 60.385 50.000 7.64 0.00 32.50 4.79
5339 6962 1.810755 GAACCAAAAAGCCCTCGTAGG 59.189 52.381 0.00 0.00 34.30 3.18
5340 6963 2.500229 TGAACCAAAAAGCCCTCGTAG 58.500 47.619 0.00 0.00 0.00 3.51
5341 6964 2.642154 TGAACCAAAAAGCCCTCGTA 57.358 45.000 0.00 0.00 0.00 3.43
5342 6965 1.770294 TTGAACCAAAAAGCCCTCGT 58.230 45.000 0.00 0.00 0.00 4.18
5343 6966 2.100749 ACTTTGAACCAAAAAGCCCTCG 59.899 45.455 0.00 0.00 38.03 4.63
5442 7081 8.579850 TTCATATCTAAAGCACAACAGGAAAT 57.420 30.769 0.00 0.00 0.00 2.17
5446 7085 7.917505 GGAAATTCATATCTAAAGCACAACAGG 59.082 37.037 0.00 0.00 0.00 4.00
5471 7110 3.565764 TCTCATGCTTATCACCTTGGG 57.434 47.619 0.00 0.00 0.00 4.12
5494 7133 7.177216 ACAATCATAAAATGAGACTGCCAAAGA 59.823 33.333 0.00 0.00 43.53 2.52
5553 7196 9.897744 TTCAGACATCAAAATACATTCAACTTC 57.102 29.630 0.00 0.00 0.00 3.01
5631 7274 6.531948 AGCTCTGTCACTAATGTCGAAAATAC 59.468 38.462 0.00 0.00 0.00 1.89
5656 7299 4.159506 GGCCCTTGACATGCATTTAGTTTA 59.840 41.667 0.00 0.00 0.00 2.01
5691 7334 9.685276 TTCCTCATTCAATACTCAAACATACAT 57.315 29.630 0.00 0.00 0.00 2.29
5765 7410 4.081531 CAGCCATTTCCCTCTTTATGCAAA 60.082 41.667 0.00 0.00 0.00 3.68
5768 7413 2.363359 CCAGCCATTTCCCTCTTTATGC 59.637 50.000 0.00 0.00 0.00 3.14
5769 7414 2.363359 GCCAGCCATTTCCCTCTTTATG 59.637 50.000 0.00 0.00 0.00 1.90
5770 7415 2.670939 GCCAGCCATTTCCCTCTTTAT 58.329 47.619 0.00 0.00 0.00 1.40
5771 7416 1.341976 GGCCAGCCATTTCCCTCTTTA 60.342 52.381 3.12 0.00 35.81 1.85
5772 7417 0.615827 GGCCAGCCATTTCCCTCTTT 60.616 55.000 3.12 0.00 35.81 2.52
5774 7419 2.240918 TGGCCAGCCATTTCCCTCT 61.241 57.895 7.43 0.00 41.89 3.69
5775 7420 2.360191 TGGCCAGCCATTTCCCTC 59.640 61.111 7.43 0.00 41.89 4.30
5791 7439 2.480759 GGGCATCTGCTTGCTTTGTATG 60.481 50.000 1.70 0.00 42.38 2.39
5880 7596 0.036105 TGACACATTCTGCGGCAGAT 60.036 50.000 31.20 17.45 40.39 2.90
5889 7605 5.771666 AGACACAATTCCAATGACACATTCT 59.228 36.000 0.00 0.00 0.00 2.40
5911 7627 3.138304 CTGTTCATGGTCCGAAAACAGA 58.862 45.455 18.43 0.00 46.09 3.41
5923 7639 2.936928 TGAGCAGCACTGTTCATGG 58.063 52.632 12.47 0.00 44.05 3.66
5998 7714 9.747898 TGTTCTTGTTAACCCATCATATACTTT 57.252 29.630 2.48 0.00 0.00 2.66
5999 7715 9.747898 TTGTTCTTGTTAACCCATCATATACTT 57.252 29.630 2.48 0.00 0.00 2.24
6000 7716 9.747898 TTTGTTCTTGTTAACCCATCATATACT 57.252 29.630 2.48 0.00 0.00 2.12
6003 7719 9.927668 CTTTTTGTTCTTGTTAACCCATCATAT 57.072 29.630 2.48 0.00 0.00 1.78
6004 7720 8.364142 CCTTTTTGTTCTTGTTAACCCATCATA 58.636 33.333 2.48 0.00 0.00 2.15
6005 7721 7.147567 ACCTTTTTGTTCTTGTTAACCCATCAT 60.148 33.333 2.48 0.00 0.00 2.45
6006 7722 6.155393 ACCTTTTTGTTCTTGTTAACCCATCA 59.845 34.615 2.48 0.00 0.00 3.07
6007 7723 6.578944 ACCTTTTTGTTCTTGTTAACCCATC 58.421 36.000 2.48 0.00 0.00 3.51
6008 7724 6.553953 ACCTTTTTGTTCTTGTTAACCCAT 57.446 33.333 2.48 0.00 0.00 4.00
6009 7725 6.436532 TGTACCTTTTTGTTCTTGTTAACCCA 59.563 34.615 2.48 0.00 0.00 4.51
6010 7726 6.865411 TGTACCTTTTTGTTCTTGTTAACCC 58.135 36.000 2.48 0.00 0.00 4.11
6015 7731 9.855021 GCATATATGTACCTTTTTGTTCTTGTT 57.145 29.630 14.14 0.00 0.00 2.83
6016 7732 8.466798 GGCATATATGTACCTTTTTGTTCTTGT 58.533 33.333 14.14 0.00 0.00 3.16
6017 7733 7.920682 GGGCATATATGTACCTTTTTGTTCTTG 59.079 37.037 14.14 0.00 0.00 3.02
6018 7734 7.839200 AGGGCATATATGTACCTTTTTGTTCTT 59.161 33.333 19.37 1.58 34.97 2.52
6019 7735 7.285401 CAGGGCATATATGTACCTTTTTGTTCT 59.715 37.037 21.38 2.98 35.90 3.01
6020 7736 7.425606 CAGGGCATATATGTACCTTTTTGTTC 58.574 38.462 21.38 0.56 35.90 3.18
6021 7737 6.323739 CCAGGGCATATATGTACCTTTTTGTT 59.676 38.462 21.38 4.32 35.90 2.83
6022 7738 5.833131 CCAGGGCATATATGTACCTTTTTGT 59.167 40.000 21.38 4.85 35.90 2.83
6023 7739 5.833131 ACCAGGGCATATATGTACCTTTTTG 59.167 40.000 21.38 14.14 35.90 2.44
6024 7740 5.833131 CACCAGGGCATATATGTACCTTTTT 59.167 40.000 21.38 10.72 35.90 1.94
6025 7741 5.385198 CACCAGGGCATATATGTACCTTTT 58.615 41.667 21.38 12.50 35.90 2.27
6026 7742 4.202567 CCACCAGGGCATATATGTACCTTT 60.203 45.833 21.38 12.75 35.90 3.11
6027 7743 3.330701 CCACCAGGGCATATATGTACCTT 59.669 47.826 21.38 10.78 35.90 3.50
6028 7744 2.912956 CCACCAGGGCATATATGTACCT 59.087 50.000 19.37 19.37 37.63 3.08
6029 7745 2.910319 TCCACCAGGGCATATATGTACC 59.090 50.000 14.14 15.41 36.21 3.34
6185 8172 9.550406 CGGAAGGAGTACCAAATAATGTTAATA 57.450 33.333 0.00 0.00 38.94 0.98
6189 8176 5.812286 ACGGAAGGAGTACCAAATAATGTT 58.188 37.500 0.00 0.00 38.94 2.71
6190 8177 5.431179 ACGGAAGGAGTACCAAATAATGT 57.569 39.130 0.00 0.00 38.94 2.71
6191 8178 6.373216 TGAAACGGAAGGAGTACCAAATAATG 59.627 38.462 0.00 0.00 38.94 1.90
6192 8179 6.478129 TGAAACGGAAGGAGTACCAAATAAT 58.522 36.000 0.00 0.00 38.94 1.28
6193 8180 5.867330 TGAAACGGAAGGAGTACCAAATAA 58.133 37.500 0.00 0.00 38.94 1.40
6194 8181 5.486735 TGAAACGGAAGGAGTACCAAATA 57.513 39.130 0.00 0.00 38.94 1.40
6195 8182 4.360951 TGAAACGGAAGGAGTACCAAAT 57.639 40.909 0.00 0.00 38.94 2.32
6196 8183 3.842007 TGAAACGGAAGGAGTACCAAA 57.158 42.857 0.00 0.00 38.94 3.28
6197 8184 3.842007 TTGAAACGGAAGGAGTACCAA 57.158 42.857 0.00 0.00 38.94 3.67
6198 8185 3.842007 TTTGAAACGGAAGGAGTACCA 57.158 42.857 0.00 0.00 38.94 3.25
6199 8186 5.936372 AGTAATTTGAAACGGAAGGAGTACC 59.064 40.000 0.00 0.00 0.00 3.34
6200 8187 7.041576 ACAAGTAATTTGAAACGGAAGGAGTAC 60.042 37.037 0.00 0.00 39.21 2.73
6201 8188 6.993902 ACAAGTAATTTGAAACGGAAGGAGTA 59.006 34.615 0.00 0.00 39.21 2.59
6202 8189 5.826208 ACAAGTAATTTGAAACGGAAGGAGT 59.174 36.000 0.00 0.00 39.21 3.85
6203 8190 6.313744 ACAAGTAATTTGAAACGGAAGGAG 57.686 37.500 0.00 0.00 39.21 3.69
6204 8191 5.049954 CGACAAGTAATTTGAAACGGAAGGA 60.050 40.000 0.00 0.00 39.21 3.36
6205 8192 5.144359 CGACAAGTAATTTGAAACGGAAGG 58.856 41.667 0.00 0.00 39.21 3.46
6206 8193 5.619607 CACGACAAGTAATTTGAAACGGAAG 59.380 40.000 0.00 0.00 39.21 3.46
6207 8194 5.503498 CACGACAAGTAATTTGAAACGGAA 58.497 37.500 0.00 0.00 39.21 4.30
6208 8195 4.024725 CCACGACAAGTAATTTGAAACGGA 60.025 41.667 0.00 0.00 39.21 4.69
6209 8196 4.215965 CCACGACAAGTAATTTGAAACGG 58.784 43.478 0.00 0.00 39.21 4.44
6210 8197 4.839796 ACCACGACAAGTAATTTGAAACG 58.160 39.130 0.00 0.00 39.21 3.60
6211 8198 7.514573 AAAACCACGACAAGTAATTTGAAAC 57.485 32.000 0.00 0.00 39.21 2.78
6212 8199 8.460428 ACTAAAACCACGACAAGTAATTTGAAA 58.540 29.630 0.00 0.00 39.21 2.69
6213 8200 7.987649 ACTAAAACCACGACAAGTAATTTGAA 58.012 30.769 0.00 0.00 39.21 2.69
6214 8201 7.556733 ACTAAAACCACGACAAGTAATTTGA 57.443 32.000 0.00 0.00 39.21 2.69
6215 8202 7.911205 TGAACTAAAACCACGACAAGTAATTTG 59.089 33.333 0.00 0.00 42.68 2.32
6216 8203 7.987649 TGAACTAAAACCACGACAAGTAATTT 58.012 30.769 0.00 0.00 0.00 1.82
6217 8204 7.556733 TGAACTAAAACCACGACAAGTAATT 57.443 32.000 0.00 0.00 0.00 1.40
6218 8205 7.308348 CCATGAACTAAAACCACGACAAGTAAT 60.308 37.037 0.00 0.00 0.00 1.89
6219 8206 6.017770 CCATGAACTAAAACCACGACAAGTAA 60.018 38.462 0.00 0.00 0.00 2.24
6220 8207 5.467399 CCATGAACTAAAACCACGACAAGTA 59.533 40.000 0.00 0.00 0.00 2.24
6221 8208 4.274950 CCATGAACTAAAACCACGACAAGT 59.725 41.667 0.00 0.00 0.00 3.16
6222 8209 4.513692 TCCATGAACTAAAACCACGACAAG 59.486 41.667 0.00 0.00 0.00 3.16
6223 8210 4.452825 TCCATGAACTAAAACCACGACAA 58.547 39.130 0.00 0.00 0.00 3.18
6224 8211 4.074627 TCCATGAACTAAAACCACGACA 57.925 40.909 0.00 0.00 0.00 4.35
6225 8212 4.609783 CGTTCCATGAACTAAAACCACGAC 60.610 45.833 0.00 0.00 40.05 4.34
6226 8213 3.495377 CGTTCCATGAACTAAAACCACGA 59.505 43.478 0.00 0.00 40.05 4.35
6227 8214 3.364565 CCGTTCCATGAACTAAAACCACG 60.365 47.826 0.00 0.00 40.05 4.94
6228 8215 3.816523 TCCGTTCCATGAACTAAAACCAC 59.183 43.478 0.00 0.00 40.05 4.16
6229 8216 4.069304 CTCCGTTCCATGAACTAAAACCA 58.931 43.478 0.00 0.00 40.05 3.67
6230 8217 3.439129 CCTCCGTTCCATGAACTAAAACC 59.561 47.826 0.00 0.00 40.05 3.27
6231 8218 3.439129 CCCTCCGTTCCATGAACTAAAAC 59.561 47.826 0.00 0.00 40.05 2.43
6232 8219 3.328343 TCCCTCCGTTCCATGAACTAAAA 59.672 43.478 0.00 0.00 40.05 1.52
6233 8220 2.907696 TCCCTCCGTTCCATGAACTAAA 59.092 45.455 0.00 0.00 40.05 1.85
6234 8221 2.500098 CTCCCTCCGTTCCATGAACTAA 59.500 50.000 0.00 0.00 40.05 2.24
6235 8222 2.108168 CTCCCTCCGTTCCATGAACTA 58.892 52.381 0.00 0.00 40.05 2.24
6236 8223 0.905357 CTCCCTCCGTTCCATGAACT 59.095 55.000 0.00 0.00 40.05 3.01
6237 8224 0.613777 ACTCCCTCCGTTCCATGAAC 59.386 55.000 0.00 0.00 38.97 3.18
6238 8225 1.829222 GTACTCCCTCCGTTCCATGAA 59.171 52.381 0.00 0.00 0.00 2.57
6239 8226 1.272816 TGTACTCCCTCCGTTCCATGA 60.273 52.381 0.00 0.00 0.00 3.07
6240 8227 1.191535 TGTACTCCCTCCGTTCCATG 58.808 55.000 0.00 0.00 0.00 3.66
6241 8228 1.762957 CATGTACTCCCTCCGTTCCAT 59.237 52.381 0.00 0.00 0.00 3.41
6242 8229 1.191535 CATGTACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
6243 8230 1.136500 GACATGTACTCCCTCCGTTCC 59.864 57.143 0.00 0.00 0.00 3.62
6244 8231 2.100989 AGACATGTACTCCCTCCGTTC 58.899 52.381 0.00 0.00 0.00 3.95
6245 8232 2.233305 AGACATGTACTCCCTCCGTT 57.767 50.000 0.00 0.00 0.00 4.44
6246 8233 2.241685 ACTAGACATGTACTCCCTCCGT 59.758 50.000 0.00 0.00 0.00 4.69
6247 8234 2.619177 CACTAGACATGTACTCCCTCCG 59.381 54.545 0.00 0.00 0.00 4.63
6248 8235 2.362717 GCACTAGACATGTACTCCCTCC 59.637 54.545 0.00 0.00 0.00 4.30
6249 8236 3.292460 AGCACTAGACATGTACTCCCTC 58.708 50.000 0.00 0.00 0.00 4.30
6250 8237 3.390175 AGCACTAGACATGTACTCCCT 57.610 47.619 0.00 0.00 0.00 4.20
6251 8238 3.195825 ACAAGCACTAGACATGTACTCCC 59.804 47.826 0.00 0.00 0.00 4.30
6252 8239 4.457834 ACAAGCACTAGACATGTACTCC 57.542 45.455 0.00 0.00 0.00 3.85
6253 8240 7.033530 AGATACAAGCACTAGACATGTACTC 57.966 40.000 0.00 3.07 30.06 2.59
6254 8241 7.411486 AAGATACAAGCACTAGACATGTACT 57.589 36.000 0.00 0.37 30.06 2.73
6255 8242 9.751542 AATAAGATACAAGCACTAGACATGTAC 57.248 33.333 0.00 0.00 30.06 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.