Multiple sequence alignment - TraesCS4A01G245100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G245100 chr4A 100.000 3132 0 0 1 3132 555439212 555442343 0.000000e+00 5784.0
1 TraesCS4A01G245100 chr4D 88.597 2324 161 56 4 2279 44547178 44544911 0.000000e+00 2728.0
2 TraesCS4A01G245100 chr4D 90.591 372 21 5 1685 2048 44543073 44542708 6.080000e-132 481.0
3 TraesCS4A01G245100 chr4D 80.876 251 41 6 24 273 408812351 408812107 1.150000e-44 191.0
4 TraesCS4A01G245100 chr4D 81.148 122 21 2 24 144 481376505 481376625 2.570000e-16 97.1
5 TraesCS4A01G245100 chr4B 89.357 1851 114 40 359 2169 64612932 64611125 0.000000e+00 2250.0
6 TraesCS4A01G245100 chr3D 89.333 525 41 7 2622 3132 564274834 564274311 0.000000e+00 645.0
7 TraesCS4A01G245100 chr3D 88.654 520 44 7 2626 3132 566923737 566923220 1.230000e-173 619.0
8 TraesCS4A01G245100 chr3D 88.136 531 47 8 2617 3132 562772467 562771938 4.440000e-173 617.0
9 TraesCS4A01G245100 chr6D 89.060 521 43 6 2626 3132 264947158 264947678 4.410000e-178 634.0
10 TraesCS4A01G245100 chr6D 90.909 44 3 1 2371 2414 385706586 385706628 1.210000e-04 58.4
11 TraesCS4A01G245100 chr5A 90.985 477 34 5 2623 3090 216557273 216557749 4.410000e-178 634.0
12 TraesCS4A01G245100 chr5A 80.368 163 27 3 26 183 331893229 331893391 5.490000e-23 119.0
13 TraesCS4A01G245100 chr5D 88.346 532 45 9 2615 3132 19503278 19502750 9.540000e-175 623.0
14 TraesCS4A01G245100 chr5D 83.010 206 30 4 2418 2619 104389305 104389509 6.900000e-42 182.0
15 TraesCS4A01G245100 chr1A 88.654 520 45 9 2626 3132 360172679 360172161 3.430000e-174 621.0
16 TraesCS4A01G245100 chr1A 92.308 39 3 0 2282 2320 135713338 135713300 4.360000e-04 56.5
17 TraesCS4A01G245100 chr7D 88.484 521 44 9 2626 3132 592300960 592300442 1.600000e-172 616.0
18 TraesCS4A01G245100 chr7D 89.535 86 4 4 166 251 529945580 529945500 1.540000e-18 104.0
19 TraesCS4A01G245100 chrUn 87.947 531 48 8 2617 3132 190473907 190473378 2.060000e-171 612.0
20 TraesCS4A01G245100 chr5B 79.798 297 46 6 24 318 378805712 378805996 1.470000e-48 204.0
21 TraesCS4A01G245100 chr6B 77.746 346 65 10 24 364 34197627 34197965 5.300000e-48 202.0
22 TraesCS4A01G245100 chr2A 81.008 258 40 7 24 278 670666971 670666720 2.460000e-46 196.0
23 TraesCS4A01G245100 chr7B 78.927 261 43 7 24 281 95325445 95325696 1.930000e-37 167.0
24 TraesCS4A01G245100 chr7A 80.417 240 29 10 24 260 138666555 138666331 1.930000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G245100 chr4A 555439212 555442343 3131 False 5784.0 5784 100.000 1 3132 1 chr4A.!!$F1 3131
1 TraesCS4A01G245100 chr4D 44542708 44547178 4470 True 1604.5 2728 89.594 4 2279 2 chr4D.!!$R2 2275
2 TraesCS4A01G245100 chr4B 64611125 64612932 1807 True 2250.0 2250 89.357 359 2169 1 chr4B.!!$R1 1810
3 TraesCS4A01G245100 chr3D 564274311 564274834 523 True 645.0 645 89.333 2622 3132 1 chr3D.!!$R2 510
4 TraesCS4A01G245100 chr3D 566923220 566923737 517 True 619.0 619 88.654 2626 3132 1 chr3D.!!$R3 506
5 TraesCS4A01G245100 chr3D 562771938 562772467 529 True 617.0 617 88.136 2617 3132 1 chr3D.!!$R1 515
6 TraesCS4A01G245100 chr6D 264947158 264947678 520 False 634.0 634 89.060 2626 3132 1 chr6D.!!$F1 506
7 TraesCS4A01G245100 chr5D 19502750 19503278 528 True 623.0 623 88.346 2615 3132 1 chr5D.!!$R1 517
8 TraesCS4A01G245100 chr1A 360172161 360172679 518 True 621.0 621 88.654 2626 3132 1 chr1A.!!$R2 506
9 TraesCS4A01G245100 chr7D 592300442 592300960 518 True 616.0 616 88.484 2626 3132 1 chr7D.!!$R2 506
10 TraesCS4A01G245100 chrUn 190473378 190473907 529 True 612.0 612 87.947 2617 3132 1 chrUn.!!$R1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 311 0.034089 AGCTTTAAATGGCCGGCTCT 60.034 50.0 28.56 11.31 0.00 4.09 F
822 852 0.175760 GCTAACCTCATCGCCACTGA 59.824 55.0 0.00 0.00 0.00 3.41 F
1791 1852 0.031178 GCAGGGTGCTCAACAACTTG 59.969 55.0 0.00 0.00 45.59 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1772 1833 0.031178 CAAGTTGTTGAGCACCCTGC 59.969 55.0 0.0 0.0 45.46 4.85 R
2001 2065 0.102300 CACACCACACACACGAGAGA 59.898 55.0 0.0 0.0 0.00 3.10 R
2600 2675 0.322322 TGGTAGTGCGTTGGTAAGGG 59.678 55.0 0.0 0.0 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.518068 GGCGGAAAATGAGGCGGG 61.518 66.667 0.00 0.00 0.00 6.13
43 44 0.967380 AGGCGGGGCTTCATTTTCTG 60.967 55.000 0.00 0.00 0.00 3.02
44 45 1.512694 GCGGGGCTTCATTTTCTGG 59.487 57.895 0.00 0.00 0.00 3.86
80 82 0.179045 GAGATGGGAATGGTCACCGG 60.179 60.000 0.00 0.00 0.00 5.28
81 83 1.823899 GATGGGAATGGTCACCGGC 60.824 63.158 0.00 0.00 0.00 6.13
105 107 5.278561 CGGTCATTTTAGGCTAGGTCTAGAG 60.279 48.000 9.03 0.00 35.21 2.43
118 120 6.428771 GCTAGGTCTAGAGTATGGTCTAGTTG 59.571 46.154 9.03 0.00 44.50 3.16
159 162 9.511144 GTAATGATTTTACTCCGTTTAAATGGG 57.489 33.333 23.35 16.79 35.72 4.00
167 170 5.434408 ACTCCGTTTAAATGGGAAGTATCC 58.566 41.667 23.35 0.00 45.77 2.59
216 219 6.097915 AGTATGAATGAATATCGTCCGGTT 57.902 37.500 0.00 0.00 0.00 4.44
236 239 6.201806 CCGGTTTATTTGAGTTTGCATCAAAA 59.798 34.615 15.77 5.46 46.52 2.44
243 246 7.606858 TTTGAGTTTGCATCAAAATTGTTCA 57.393 28.000 10.73 0.00 42.18 3.18
244 247 6.831727 TGAGTTTGCATCAAAATTGTTCAG 57.168 33.333 0.00 0.00 35.03 3.02
249 252 8.177013 AGTTTGCATCAAAATTGTTCAGTTTTC 58.823 29.630 3.67 0.00 35.03 2.29
250 253 6.271396 TGCATCAAAATTGTTCAGTTTTCG 57.729 33.333 3.67 1.88 0.00 3.46
260 263 9.894439 AAATTGTTCAGTTTTCGTTAAAATTCG 57.106 25.926 0.00 0.00 36.96 3.34
263 266 8.450385 TGTTCAGTTTTCGTTAAAATTCGTTT 57.550 26.923 0.00 0.00 36.96 3.60
270 273 9.678247 GTTTTCGTTAAAATTCGTTTGAAATGT 57.322 25.926 0.00 0.00 36.96 2.71
274 277 8.956014 TCGTTAAAATTCGTTTGAAATGTAACC 58.044 29.630 0.00 0.00 37.71 2.85
284 287 6.199393 GTTTGAAATGTAACCGGATAGATGC 58.801 40.000 9.46 1.69 0.00 3.91
285 288 5.029807 TGAAATGTAACCGGATAGATGCA 57.970 39.130 9.46 4.52 0.00 3.96
286 289 5.620206 TGAAATGTAACCGGATAGATGCAT 58.380 37.500 9.46 0.00 0.00 3.96
295 298 6.791867 ACCGGATAGATGCATATAGCTTTA 57.208 37.500 15.50 0.00 45.94 1.85
296 299 7.182817 ACCGGATAGATGCATATAGCTTTAA 57.817 36.000 15.50 0.00 45.94 1.52
305 308 3.673323 GCATATAGCTTTAAATGGCCGGC 60.673 47.826 21.18 21.18 41.15 6.13
307 310 1.675552 TAGCTTTAAATGGCCGGCTC 58.324 50.000 28.56 17.27 0.00 4.70
308 311 0.034089 AGCTTTAAATGGCCGGCTCT 60.034 50.000 28.56 11.31 0.00 4.09
312 315 1.173043 TTAAATGGCCGGCTCTTGTG 58.827 50.000 28.56 0.00 0.00 3.33
314 317 1.244019 AAATGGCCGGCTCTTGTGTC 61.244 55.000 28.56 7.32 0.00 3.67
319 328 2.738521 CGGCTCTTGTGTCCGTGG 60.739 66.667 0.00 0.00 38.47 4.94
341 350 0.179040 TCGTCCCCCAGTTTGTGAAC 60.179 55.000 0.00 0.00 35.97 3.18
345 354 1.170290 CCCCCAGTTTGTGAACGGAC 61.170 60.000 0.00 0.00 40.75 4.79
347 356 0.661020 CCCAGTTTGTGAACGGACAC 59.339 55.000 7.18 7.18 40.75 3.67
351 360 0.810823 GTTTGTGAACGGACACGGGA 60.811 55.000 0.00 0.00 46.48 5.14
353 362 1.393487 TTGTGAACGGACACGGGAGA 61.393 55.000 0.00 0.00 46.48 3.71
354 363 1.183030 TGTGAACGGACACGGGAGAT 61.183 55.000 0.00 0.00 46.48 2.75
357 366 2.104967 TGAACGGACACGGGAGATAAT 58.895 47.619 0.00 0.00 46.48 1.28
371 394 5.991606 CGGGAGATAATTTGAAGATGCACTA 59.008 40.000 0.00 0.00 0.00 2.74
379 402 2.826428 TGAAGATGCACTAATCCGCTC 58.174 47.619 0.00 0.00 0.00 5.03
387 410 0.178068 ACTAATCCGCTCGGTTGCAT 59.822 50.000 8.28 0.00 36.47 3.96
476 499 5.353956 TCACATTCCAGATGGTTTTCATACG 59.646 40.000 0.00 0.00 35.97 3.06
487 510 4.513692 TGGTTTTCATACGAAGACACAAGG 59.486 41.667 0.00 0.00 37.85 3.61
488 511 4.464112 GTTTTCATACGAAGACACAAGGC 58.536 43.478 0.00 0.00 36.49 4.35
534 558 5.623824 GCCGTAGTTAAACTCTGGATCTCAA 60.624 44.000 0.00 0.00 0.00 3.02
593 619 5.525378 GTGATCTGTCCATTCTCATTACACC 59.475 44.000 0.00 0.00 0.00 4.16
675 703 6.049790 AGTCAGGTTTAGATATTTTCGCTCC 58.950 40.000 0.00 0.00 0.00 4.70
687 716 9.167311 AGATATTTTCGCTCCATATAATCCAAC 57.833 33.333 0.00 0.00 0.00 3.77
705 734 4.767255 CGAGCAGTGGGGCCAGTC 62.767 72.222 4.39 0.00 0.00 3.51
740 769 2.551270 GCACGACTGTCCAAAGCG 59.449 61.111 1.55 0.00 0.00 4.68
768 798 3.181455 CGTCATCCAATCTTATCACCCCA 60.181 47.826 0.00 0.00 0.00 4.96
813 843 3.502211 CGGTCAAAACAAGCTAACCTCAT 59.498 43.478 0.00 0.00 0.00 2.90
816 846 3.188460 TCAAAACAAGCTAACCTCATCGC 59.812 43.478 0.00 0.00 0.00 4.58
820 850 0.905357 AAGCTAACCTCATCGCCACT 59.095 50.000 0.00 0.00 0.00 4.00
822 852 0.175760 GCTAACCTCATCGCCACTGA 59.824 55.000 0.00 0.00 0.00 3.41
823 853 1.927895 CTAACCTCATCGCCACTGAC 58.072 55.000 0.00 0.00 0.00 3.51
862 893 3.912907 CCCCGGTCCGATCCTTCG 61.913 72.222 14.39 0.00 45.08 3.79
961 992 4.832608 GTGACCGCATCCCCGTCC 62.833 72.222 0.00 0.00 0.00 4.79
1030 1061 2.236146 TGCACTTGATCTTATCGGTGGT 59.764 45.455 11.80 0.00 36.67 4.16
1034 1065 5.043903 CACTTGATCTTATCGGTGGTAGTG 58.956 45.833 0.00 0.00 34.37 2.74
1052 1084 0.673985 TGCTACAAGCGAGTGACACT 59.326 50.000 8.12 8.12 46.26 3.55
1084 1116 2.419159 CCGATCAGATCCAACTTCTGCA 60.419 50.000 4.73 0.00 40.35 4.41
1087 1119 3.049708 TCAGATCCAACTTCTGCACAG 57.950 47.619 0.00 0.00 40.35 3.66
1215 1247 8.960591 ACACAGGTACAGTTTATATACGTTAGT 58.039 33.333 0.00 0.00 0.00 2.24
1216 1248 9.443283 CACAGGTACAGTTTATATACGTTAGTC 57.557 37.037 0.00 0.00 0.00 2.59
1269 1313 4.474113 AGAAGAACGTAAGAACTAGCACG 58.526 43.478 0.00 0.00 43.62 5.34
1273 1317 4.692625 AGAACGTAAGAACTAGCACGAGTA 59.307 41.667 0.00 0.00 43.62 2.59
1322 1366 3.560636 CGGAGGATCTGTTGGGTTTAT 57.439 47.619 0.00 0.00 36.51 1.40
1323 1367 3.886123 CGGAGGATCTGTTGGGTTTATT 58.114 45.455 0.00 0.00 36.51 1.40
1338 1382 7.209471 TGGGTTTATTATTGTGTGAACTGAC 57.791 36.000 0.00 0.00 0.00 3.51
1510 1554 2.203538 AGCAACCTGGCCACCAAG 60.204 61.111 0.00 0.00 30.80 3.61
1575 1619 0.320771 ACCGTCTACGACTGGTACGT 60.321 55.000 3.65 0.00 45.75 3.57
1576 1620 1.067142 ACCGTCTACGACTGGTACGTA 60.067 52.381 3.65 0.00 43.62 3.57
1577 1621 1.324736 CCGTCTACGACTGGTACGTAC 59.675 57.143 17.56 17.56 43.62 3.67
1578 1622 1.007011 CGTCTACGACTGGTACGTACG 60.007 57.143 18.98 15.01 43.62 3.67
1595 1639 5.176592 ACGTACGCTAGCTCATGATCTATA 58.823 41.667 16.72 0.00 0.00 1.31
1596 1640 5.818336 ACGTACGCTAGCTCATGATCTATAT 59.182 40.000 16.72 0.00 0.00 0.86
1597 1641 6.985059 ACGTACGCTAGCTCATGATCTATATA 59.015 38.462 16.72 0.00 0.00 0.86
1598 1642 7.658167 ACGTACGCTAGCTCATGATCTATATAT 59.342 37.037 16.72 0.00 0.00 0.86
1599 1643 8.166066 CGTACGCTAGCTCATGATCTATATATC 58.834 40.741 13.93 0.00 0.00 1.63
1604 1648 8.229811 GCTAGCTCATGATCTATATATCTCACG 58.770 40.741 7.70 0.00 0.00 4.35
1605 1649 7.509141 AGCTCATGATCTATATATCTCACGG 57.491 40.000 0.00 0.00 0.00 4.94
1608 1652 8.286800 GCTCATGATCTATATATCTCACGGTAC 58.713 40.741 0.00 0.00 0.00 3.34
1622 1666 7.416154 TCTCACGGTACAAAATCAGTTTTAG 57.584 36.000 0.00 0.00 35.83 1.85
1645 1689 4.618920 AACACGATCTACTGGGAACTTT 57.381 40.909 0.00 0.00 0.00 2.66
1667 1711 0.602562 ACGGGTGAACATGGCAAATG 59.397 50.000 0.00 0.00 0.00 2.32
1719 1780 1.981668 GCTTTACAGCGACGAGACG 59.018 57.895 0.00 0.00 35.91 4.18
1725 1786 2.358369 AGCGACGAGACGAGGACA 60.358 61.111 0.00 0.00 35.09 4.02
1772 1833 0.390472 GTCGGCCAGAGAACTGAAGG 60.390 60.000 2.24 0.00 46.03 3.46
1791 1852 0.031178 GCAGGGTGCTCAACAACTTG 59.969 55.000 0.00 0.00 45.59 3.16
1837 1898 5.277538 GCTCTTTTGGTTATCTAATCCTGCG 60.278 44.000 0.00 0.00 0.00 5.18
1878 1939 1.336240 GGCTGCATGTGGTTTGTCTTC 60.336 52.381 0.50 0.00 0.00 2.87
1915 1977 8.174733 ACTGTCTACTAGTGCTTGTAACTTTA 57.825 34.615 5.39 0.00 0.00 1.85
1924 1986 9.612620 CTAGTGCTTGTAACTTTATTTTCTTGG 57.387 33.333 0.00 0.00 0.00 3.61
1931 1993 6.935771 TGTAACTTTATTTTCTTGGCTCGGTA 59.064 34.615 0.00 0.00 0.00 4.02
1974 2038 2.009774 GATGGGTGTATGTGTGTGCTC 58.990 52.381 0.00 0.00 0.00 4.26
1981 2045 4.055360 GTGTATGTGTGTGCTCTGTGTAA 58.945 43.478 0.00 0.00 0.00 2.41
1990 2054 1.012841 GCTCTGTGTAAGCTCCATGC 58.987 55.000 0.00 0.00 43.29 4.06
2001 2065 2.919666 GCTCCATGCGTGTGTAAATT 57.080 45.000 4.96 0.00 0.00 1.82
2002 2066 2.785679 GCTCCATGCGTGTGTAAATTC 58.214 47.619 4.96 0.00 0.00 2.17
2023 2089 1.151777 CTCGTGTGTGTGGTGTGGTC 61.152 60.000 0.00 0.00 0.00 4.02
2045 2117 6.884836 GGTCTTCTCAATGTTTAACCACCTAT 59.115 38.462 0.00 0.00 0.00 2.57
2046 2118 7.148239 GGTCTTCTCAATGTTTAACCACCTATG 60.148 40.741 0.00 0.00 0.00 2.23
2079 2153 2.225467 ACAGCCTCAGAGCAAGTTTTC 58.775 47.619 0.00 0.00 34.23 2.29
2081 2155 1.423161 AGCCTCAGAGCAAGTTTTCCT 59.577 47.619 0.00 0.00 34.23 3.36
2173 2247 9.498176 AATAGGTAGTACAATGAACGAAAAACT 57.502 29.630 2.06 0.00 0.00 2.66
2176 2250 7.496591 AGGTAGTACAATGAACGAAAAACTGAA 59.503 33.333 2.06 0.00 0.00 3.02
2177 2251 7.585210 GGTAGTACAATGAACGAAAAACTGAAC 59.415 37.037 2.06 0.00 0.00 3.18
2178 2252 7.316544 AGTACAATGAACGAAAAACTGAACT 57.683 32.000 0.00 0.00 0.00 3.01
2179 2253 8.428186 AGTACAATGAACGAAAAACTGAACTA 57.572 30.769 0.00 0.00 0.00 2.24
2180 2254 8.548721 AGTACAATGAACGAAAAACTGAACTAG 58.451 33.333 0.00 0.00 0.00 2.57
2181 2255 7.548196 ACAATGAACGAAAAACTGAACTAGA 57.452 32.000 0.00 0.00 0.00 2.43
2182 2256 7.407337 ACAATGAACGAAAAACTGAACTAGAC 58.593 34.615 0.00 0.00 0.00 2.59
2183 2257 5.630896 TGAACGAAAAACTGAACTAGACG 57.369 39.130 0.00 0.00 0.00 4.18
2201 2275 1.504359 CGCAGAACGGTTAACAAGGA 58.496 50.000 8.10 0.00 38.44 3.36
2206 2281 5.334260 CGCAGAACGGTTAACAAGGATAAAA 60.334 40.000 8.10 0.00 38.44 1.52
2207 2282 6.440436 GCAGAACGGTTAACAAGGATAAAAA 58.560 36.000 8.10 0.00 0.00 1.94
2246 2321 3.722728 AGCCTTGTTCTTTTTCTGCTG 57.277 42.857 0.00 0.00 0.00 4.41
2263 2338 3.071479 TGCTGTCCGTTGGAGATTAAAC 58.929 45.455 0.00 0.00 29.39 2.01
2270 2345 6.882140 TGTCCGTTGGAGATTAAACATTACAT 59.118 34.615 0.00 0.00 29.39 2.29
2272 2347 7.696453 GTCCGTTGGAGATTAAACATTACATTG 59.304 37.037 0.00 0.00 29.39 2.82
2374 2449 9.474313 AGGCATTTATAGAAAACTGAAATACCA 57.526 29.630 0.00 0.00 28.99 3.25
2414 2489 9.530129 GACAAAAATCAATTACAAGAGACTACG 57.470 33.333 0.00 0.00 0.00 3.51
2415 2490 9.268268 ACAAAAATCAATTACAAGAGACTACGA 57.732 29.630 0.00 0.00 0.00 3.43
2416 2491 9.530129 CAAAAATCAATTACAAGAGACTACGAC 57.470 33.333 0.00 0.00 0.00 4.34
2417 2492 9.490379 AAAAATCAATTACAAGAGACTACGACT 57.510 29.630 0.00 0.00 0.00 4.18
2418 2493 9.490379 AAAATCAATTACAAGAGACTACGACTT 57.510 29.630 0.00 0.00 0.00 3.01
2419 2494 9.490379 AAATCAATTACAAGAGACTACGACTTT 57.510 29.630 0.00 0.00 0.00 2.66
2420 2495 9.490379 AATCAATTACAAGAGACTACGACTTTT 57.510 29.630 0.00 0.00 0.00 2.27
2428 2503 8.460428 ACAAGAGACTACGACTTTTATAGAAGG 58.540 37.037 7.83 0.00 0.00 3.46
2429 2504 7.030075 AGAGACTACGACTTTTATAGAAGGC 57.970 40.000 7.83 3.49 0.00 4.35
2430 2505 6.602406 AGAGACTACGACTTTTATAGAAGGCA 59.398 38.462 9.39 0.00 34.17 4.75
2431 2506 7.285858 AGAGACTACGACTTTTATAGAAGGCAT 59.714 37.037 9.39 0.00 34.17 4.40
2432 2507 8.461249 AGACTACGACTTTTATAGAAGGCATA 57.539 34.615 9.39 0.00 34.17 3.14
2433 2508 8.910944 AGACTACGACTTTTATAGAAGGCATAA 58.089 33.333 9.39 0.00 34.17 1.90
2434 2509 9.525409 GACTACGACTTTTATAGAAGGCATAAA 57.475 33.333 9.39 0.00 34.17 1.40
2437 2512 8.958119 ACGACTTTTATAGAAGGCATAAATCA 57.042 30.769 9.39 0.00 34.17 2.57
2438 2513 9.391006 ACGACTTTTATAGAAGGCATAAATCAA 57.609 29.630 9.39 0.00 34.17 2.57
2448 2523 8.814038 AGAAGGCATAAATCAATTACAAGACT 57.186 30.769 0.00 0.00 0.00 3.24
2449 2524 9.247861 AGAAGGCATAAATCAATTACAAGACTT 57.752 29.630 0.00 0.00 29.17 3.01
2450 2525 9.508567 GAAGGCATAAATCAATTACAAGACTTC 57.491 33.333 0.00 0.00 34.16 3.01
2451 2526 8.579850 AGGCATAAATCAATTACAAGACTTCA 57.420 30.769 0.00 0.00 0.00 3.02
2452 2527 9.023962 AGGCATAAATCAATTACAAGACTTCAA 57.976 29.630 0.00 0.00 0.00 2.69
2453 2528 9.076596 GGCATAAATCAATTACAAGACTTCAAC 57.923 33.333 0.00 0.00 0.00 3.18
2454 2529 9.846248 GCATAAATCAATTACAAGACTTCAACT 57.154 29.630 0.00 0.00 0.00 3.16
2457 2532 8.579682 AAATCAATTACAAGACTTCAACTTGC 57.420 30.769 0.00 0.00 45.66 4.01
2458 2533 6.942532 TCAATTACAAGACTTCAACTTGCT 57.057 33.333 0.00 0.00 45.66 3.91
2459 2534 6.728200 TCAATTACAAGACTTCAACTTGCTG 58.272 36.000 0.00 0.00 45.66 4.41
2460 2535 4.552166 TTACAAGACTTCAACTTGCTGC 57.448 40.909 0.00 0.00 45.66 5.25
2461 2536 2.368439 ACAAGACTTCAACTTGCTGCA 58.632 42.857 0.00 0.00 45.66 4.41
2462 2537 2.754552 ACAAGACTTCAACTTGCTGCAA 59.245 40.909 15.16 15.16 45.66 4.08
2463 2538 3.193267 ACAAGACTTCAACTTGCTGCAAA 59.807 39.130 16.74 0.00 45.66 3.68
2464 2539 3.427161 AGACTTCAACTTGCTGCAAAC 57.573 42.857 16.74 1.49 0.00 2.93
2465 2540 2.754552 AGACTTCAACTTGCTGCAAACA 59.245 40.909 16.74 0.00 0.00 2.83
2466 2541 3.193267 AGACTTCAACTTGCTGCAAACAA 59.807 39.130 16.74 5.79 0.00 2.83
2467 2542 3.253230 ACTTCAACTTGCTGCAAACAAC 58.747 40.909 16.74 0.00 0.00 3.32
2468 2543 3.252400 CTTCAACTTGCTGCAAACAACA 58.748 40.909 16.74 0.22 0.00 3.33
2469 2544 3.309961 TCAACTTGCTGCAAACAACAA 57.690 38.095 16.74 0.00 31.32 2.83
2473 2548 2.609350 CTTGCTGCAAACAACAAGTGT 58.391 42.857 16.74 0.00 42.49 3.55
2474 2549 3.768406 CTTGCTGCAAACAACAAGTGTA 58.232 40.909 16.74 0.00 42.49 2.90
2475 2550 3.419264 TGCTGCAAACAACAAGTGTAG 57.581 42.857 0.00 0.00 40.60 2.74
2476 2551 2.752354 TGCTGCAAACAACAAGTGTAGT 59.248 40.909 0.00 0.00 40.60 2.73
2477 2552 3.192422 TGCTGCAAACAACAAGTGTAGTT 59.808 39.130 0.00 0.00 40.60 2.24
2488 2563 4.630894 CAAGTGTAGTTGAAACTTGGCA 57.369 40.909 0.21 0.00 44.50 4.92
2489 2564 5.186996 CAAGTGTAGTTGAAACTTGGCAT 57.813 39.130 0.21 0.00 44.50 4.40
2490 2565 5.591099 CAAGTGTAGTTGAAACTTGGCATT 58.409 37.500 0.21 0.00 44.50 3.56
2491 2566 5.438761 AGTGTAGTTGAAACTTGGCATTC 57.561 39.130 0.21 0.00 40.37 2.67
2492 2567 4.278419 AGTGTAGTTGAAACTTGGCATTCC 59.722 41.667 0.21 0.00 40.37 3.01
2493 2568 4.037446 GTGTAGTTGAAACTTGGCATTCCA 59.963 41.667 0.21 0.00 40.37 3.53
2494 2569 4.832266 TGTAGTTGAAACTTGGCATTCCAT 59.168 37.500 0.21 0.00 43.05 3.41
2495 2570 4.525912 AGTTGAAACTTGGCATTCCATC 57.474 40.909 0.00 0.00 43.05 3.51
2496 2571 3.057315 AGTTGAAACTTGGCATTCCATCG 60.057 43.478 0.00 0.00 43.05 3.84
2497 2572 1.202114 TGAAACTTGGCATTCCATCGC 59.798 47.619 0.00 0.00 43.05 4.58
2498 2573 1.202114 GAAACTTGGCATTCCATCGCA 59.798 47.619 0.00 0.00 43.05 5.10
2499 2574 1.255882 AACTTGGCATTCCATCGCAA 58.744 45.000 0.00 0.00 43.05 4.85
2500 2575 1.477553 ACTTGGCATTCCATCGCAAT 58.522 45.000 0.00 0.00 43.05 3.56
2501 2576 2.653726 ACTTGGCATTCCATCGCAATA 58.346 42.857 0.00 0.00 43.05 1.90
2502 2577 3.023119 ACTTGGCATTCCATCGCAATAA 58.977 40.909 0.00 0.00 43.05 1.40
2503 2578 3.638160 ACTTGGCATTCCATCGCAATAAT 59.362 39.130 0.00 0.00 43.05 1.28
2504 2579 4.099881 ACTTGGCATTCCATCGCAATAATT 59.900 37.500 0.00 0.00 43.05 1.40
2505 2580 5.301551 ACTTGGCATTCCATCGCAATAATTA 59.698 36.000 0.00 0.00 43.05 1.40
2506 2581 5.119931 TGGCATTCCATCGCAATAATTAC 57.880 39.130 0.00 0.00 37.47 1.89
2507 2582 4.582240 TGGCATTCCATCGCAATAATTACA 59.418 37.500 0.00 0.00 37.47 2.41
2508 2583 5.068329 TGGCATTCCATCGCAATAATTACAA 59.932 36.000 0.00 0.00 37.47 2.41
2509 2584 5.982516 GGCATTCCATCGCAATAATTACAAA 59.017 36.000 0.00 0.00 0.00 2.83
2510 2585 6.074356 GGCATTCCATCGCAATAATTACAAAC 60.074 38.462 0.00 0.00 0.00 2.93
2511 2586 6.475076 GCATTCCATCGCAATAATTACAAACA 59.525 34.615 0.00 0.00 0.00 2.83
2512 2587 7.009999 GCATTCCATCGCAATAATTACAAACAA 59.990 33.333 0.00 0.00 0.00 2.83
2513 2588 8.867935 CATTCCATCGCAATAATTACAAACAAA 58.132 29.630 0.00 0.00 0.00 2.83
2514 2589 7.804614 TCCATCGCAATAATTACAAACAAAC 57.195 32.000 0.00 0.00 0.00 2.93
2515 2590 6.524933 TCCATCGCAATAATTACAAACAAACG 59.475 34.615 0.00 0.00 0.00 3.60
2516 2591 6.524933 CCATCGCAATAATTACAAACAAACGA 59.475 34.615 0.00 0.00 0.00 3.85
2517 2592 7.061210 CCATCGCAATAATTACAAACAAACGAA 59.939 33.333 0.00 0.00 0.00 3.85
2518 2593 7.909777 TCGCAATAATTACAAACAAACGAAA 57.090 28.000 0.00 0.00 0.00 3.46
2519 2594 8.336498 TCGCAATAATTACAAACAAACGAAAA 57.664 26.923 0.00 0.00 0.00 2.29
2520 2595 8.804743 TCGCAATAATTACAAACAAACGAAAAA 58.195 25.926 0.00 0.00 0.00 1.94
2521 2596 9.076420 CGCAATAATTACAAACAAACGAAAAAG 57.924 29.630 0.00 0.00 0.00 2.27
2522 2597 9.364110 GCAATAATTACAAACAAACGAAAAAGG 57.636 29.630 0.00 0.00 0.00 3.11
2525 2600 7.528481 AATTACAAACAAACGAAAAAGGTCC 57.472 32.000 0.00 0.00 0.00 4.46
2526 2601 4.794278 ACAAACAAACGAAAAAGGTCCT 57.206 36.364 0.00 0.00 0.00 3.85
2527 2602 4.490743 ACAAACAAACGAAAAAGGTCCTG 58.509 39.130 0.00 0.00 0.00 3.86
2528 2603 2.863401 ACAAACGAAAAAGGTCCTGC 57.137 45.000 0.00 0.00 0.00 4.85
2529 2604 1.407618 ACAAACGAAAAAGGTCCTGCC 59.592 47.619 0.00 0.00 37.58 4.85
2541 2616 3.492102 GGTCCTGCCTTATGCTAATCA 57.508 47.619 0.00 0.00 42.00 2.57
2542 2617 4.026356 GGTCCTGCCTTATGCTAATCAT 57.974 45.455 0.00 0.00 42.00 2.45
2543 2618 4.006319 GGTCCTGCCTTATGCTAATCATC 58.994 47.826 0.00 0.00 42.00 2.92
2544 2619 4.263243 GGTCCTGCCTTATGCTAATCATCT 60.263 45.833 0.00 0.00 42.00 2.90
2545 2620 5.046304 GGTCCTGCCTTATGCTAATCATCTA 60.046 44.000 0.00 0.00 42.00 1.98
2546 2621 6.105333 GTCCTGCCTTATGCTAATCATCTAG 58.895 44.000 0.00 0.00 42.00 2.43
2547 2622 4.874966 CCTGCCTTATGCTAATCATCTAGC 59.125 45.833 0.00 0.00 43.90 3.42
2548 2623 5.338219 CCTGCCTTATGCTAATCATCTAGCT 60.338 44.000 4.41 0.00 43.96 3.32
2549 2624 5.485620 TGCCTTATGCTAATCATCTAGCTG 58.514 41.667 0.00 0.00 43.96 4.24
2550 2625 4.332268 GCCTTATGCTAATCATCTAGCTGC 59.668 45.833 0.00 0.00 43.96 5.25
2551 2626 4.565962 CCTTATGCTAATCATCTAGCTGCG 59.434 45.833 0.00 0.00 43.96 5.18
2552 2627 3.674528 ATGCTAATCATCTAGCTGCGT 57.325 42.857 0.00 0.00 43.96 5.24
2553 2628 3.018598 TGCTAATCATCTAGCTGCGTC 57.981 47.619 0.00 0.00 43.96 5.19
2554 2629 2.362077 TGCTAATCATCTAGCTGCGTCA 59.638 45.455 0.00 0.00 43.96 4.35
2555 2630 2.728839 GCTAATCATCTAGCTGCGTCAC 59.271 50.000 0.00 0.00 41.01 3.67
2556 2631 2.967599 AATCATCTAGCTGCGTCACA 57.032 45.000 0.00 0.00 0.00 3.58
2557 2632 2.967599 ATCATCTAGCTGCGTCACAA 57.032 45.000 0.00 0.00 0.00 3.33
2558 2633 1.996292 TCATCTAGCTGCGTCACAAC 58.004 50.000 0.00 0.00 0.00 3.32
2559 2634 1.272212 TCATCTAGCTGCGTCACAACA 59.728 47.619 0.00 0.00 0.00 3.33
2560 2635 2.068519 CATCTAGCTGCGTCACAACAA 58.931 47.619 0.00 0.00 0.00 2.83
2561 2636 2.232756 TCTAGCTGCGTCACAACAAA 57.767 45.000 0.00 0.00 0.00 2.83
2562 2637 2.556257 TCTAGCTGCGTCACAACAAAA 58.444 42.857 0.00 0.00 0.00 2.44
2563 2638 2.543848 TCTAGCTGCGTCACAACAAAAG 59.456 45.455 0.00 0.00 0.00 2.27
2564 2639 1.094785 AGCTGCGTCACAACAAAAGT 58.905 45.000 0.00 0.00 0.00 2.66
2565 2640 2.285083 AGCTGCGTCACAACAAAAGTA 58.715 42.857 0.00 0.00 0.00 2.24
2566 2641 2.287915 AGCTGCGTCACAACAAAAGTAG 59.712 45.455 0.00 0.00 0.00 2.57
2567 2642 2.602217 GCTGCGTCACAACAAAAGTAGG 60.602 50.000 0.00 0.00 0.00 3.18
2568 2643 2.612212 CTGCGTCACAACAAAAGTAGGT 59.388 45.455 0.00 0.00 0.00 3.08
2569 2644 2.610374 TGCGTCACAACAAAAGTAGGTC 59.390 45.455 0.00 0.00 0.00 3.85
2570 2645 2.348218 GCGTCACAACAAAAGTAGGTCG 60.348 50.000 0.00 0.00 0.00 4.79
2571 2646 2.348218 CGTCACAACAAAAGTAGGTCGC 60.348 50.000 0.00 0.00 0.00 5.19
2572 2647 2.032290 GTCACAACAAAAGTAGGTCGCC 60.032 50.000 0.00 0.00 0.00 5.54
2573 2648 2.158871 TCACAACAAAAGTAGGTCGCCT 60.159 45.455 3.87 3.87 37.71 5.52
2574 2649 2.223377 CACAACAAAAGTAGGTCGCCTC 59.777 50.000 1.46 0.00 34.61 4.70
2575 2650 1.459592 CAACAAAAGTAGGTCGCCTCG 59.540 52.381 1.46 0.00 34.61 4.63
2576 2651 0.963962 ACAAAAGTAGGTCGCCTCGA 59.036 50.000 1.46 0.00 34.61 4.04
2577 2652 1.342174 ACAAAAGTAGGTCGCCTCGAA 59.658 47.619 1.46 0.00 37.72 3.71
2578 2653 1.993370 CAAAAGTAGGTCGCCTCGAAG 59.007 52.381 1.46 0.00 37.72 3.79
2579 2654 1.542492 AAAGTAGGTCGCCTCGAAGA 58.458 50.000 1.46 0.00 37.72 2.87
2594 2669 3.541632 TCGAAGAGCAATAAATCCACCC 58.458 45.455 0.00 0.00 0.00 4.61
2595 2670 3.054728 TCGAAGAGCAATAAATCCACCCA 60.055 43.478 0.00 0.00 0.00 4.51
2596 2671 3.694072 CGAAGAGCAATAAATCCACCCAA 59.306 43.478 0.00 0.00 0.00 4.12
2597 2672 4.157656 CGAAGAGCAATAAATCCACCCAAA 59.842 41.667 0.00 0.00 0.00 3.28
2598 2673 5.336372 CGAAGAGCAATAAATCCACCCAAAA 60.336 40.000 0.00 0.00 0.00 2.44
2599 2674 6.625532 AAGAGCAATAAATCCACCCAAAAT 57.374 33.333 0.00 0.00 0.00 1.82
2600 2675 6.225981 AGAGCAATAAATCCACCCAAAATC 57.774 37.500 0.00 0.00 0.00 2.17
2601 2676 5.129320 AGAGCAATAAATCCACCCAAAATCC 59.871 40.000 0.00 0.00 0.00 3.01
2602 2677 4.164030 AGCAATAAATCCACCCAAAATCCC 59.836 41.667 0.00 0.00 0.00 3.85
2603 2678 4.164030 GCAATAAATCCACCCAAAATCCCT 59.836 41.667 0.00 0.00 0.00 4.20
2604 2679 5.339118 GCAATAAATCCACCCAAAATCCCTT 60.339 40.000 0.00 0.00 0.00 3.95
2605 2680 6.126911 GCAATAAATCCACCCAAAATCCCTTA 60.127 38.462 0.00 0.00 0.00 2.69
2606 2681 7.272244 CAATAAATCCACCCAAAATCCCTTAC 58.728 38.462 0.00 0.00 0.00 2.34
2607 2682 2.911552 TCCACCCAAAATCCCTTACC 57.088 50.000 0.00 0.00 0.00 2.85
2608 2683 2.074579 TCCACCCAAAATCCCTTACCA 58.925 47.619 0.00 0.00 0.00 3.25
2609 2684 2.451273 TCCACCCAAAATCCCTTACCAA 59.549 45.455 0.00 0.00 0.00 3.67
2610 2685 2.565391 CCACCCAAAATCCCTTACCAAC 59.435 50.000 0.00 0.00 0.00 3.77
2611 2686 2.230266 CACCCAAAATCCCTTACCAACG 59.770 50.000 0.00 0.00 0.00 4.10
2612 2687 1.203758 CCCAAAATCCCTTACCAACGC 59.796 52.381 0.00 0.00 0.00 4.84
2613 2688 1.889829 CCAAAATCCCTTACCAACGCA 59.110 47.619 0.00 0.00 0.00 5.24
2614 2689 2.352323 CCAAAATCCCTTACCAACGCAC 60.352 50.000 0.00 0.00 0.00 5.34
2615 2690 2.556622 CAAAATCCCTTACCAACGCACT 59.443 45.455 0.00 0.00 0.00 4.40
2616 2691 3.706600 AAATCCCTTACCAACGCACTA 57.293 42.857 0.00 0.00 0.00 2.74
2617 2692 2.685850 ATCCCTTACCAACGCACTAC 57.314 50.000 0.00 0.00 0.00 2.73
2618 2693 0.609662 TCCCTTACCAACGCACTACC 59.390 55.000 0.00 0.00 0.00 3.18
2619 2694 0.322322 CCCTTACCAACGCACTACCA 59.678 55.000 0.00 0.00 0.00 3.25
2620 2695 1.435577 CCTTACCAACGCACTACCAC 58.564 55.000 0.00 0.00 0.00 4.16
2621 2696 1.001633 CCTTACCAACGCACTACCACT 59.998 52.381 0.00 0.00 0.00 4.00
2622 2697 2.231964 CCTTACCAACGCACTACCACTA 59.768 50.000 0.00 0.00 0.00 2.74
2732 2816 8.445493 GTTTGTTATAAAACACGCTACTGGTAT 58.555 33.333 0.00 0.00 45.18 2.73
2751 2842 8.036575 ACTGGTATAACATAGTAGCGTTTTTGA 58.963 33.333 0.00 0.00 0.00 2.69
2759 2850 0.955905 TAGCGTTTTTGAAGGCCACC 59.044 50.000 5.01 0.00 34.37 4.61
2785 2876 3.027412 TGGTAAGTTTGCCACAACACAT 58.973 40.909 0.00 0.00 38.05 3.21
2788 2879 4.261994 GGTAAGTTTGCCACAACACATCAT 60.262 41.667 0.00 0.00 32.69 2.45
2789 2880 4.405116 AAGTTTGCCACAACACATCATT 57.595 36.364 0.00 0.00 0.00 2.57
2794 2885 1.535028 GCCACAACACATCATTCGACA 59.465 47.619 0.00 0.00 0.00 4.35
2797 2888 4.221342 CCACAACACATCATTCGACAAAG 58.779 43.478 0.00 0.00 0.00 2.77
2828 2919 4.522022 AGTAGCGTTTGTAGTCTAACCAGT 59.478 41.667 0.00 0.00 0.00 4.00
2886 2977 2.295253 AGACGCGCTACTGCTATTTT 57.705 45.000 5.73 0.00 36.97 1.82
2937 3029 7.807907 GCATTGTTTTTGTACAAGTGCTATAGT 59.192 33.333 8.56 0.00 40.99 2.12
3070 4357 2.556766 CCCTTTCTTCTTCCTCTCCCT 58.443 52.381 0.00 0.00 0.00 4.20
3084 4371 1.725182 TCTCCCTCTTCCTTTCTCCCT 59.275 52.381 0.00 0.00 0.00 4.20
3088 4380 2.916269 CCCTCTTCCTTTCTCCCTCTTT 59.084 50.000 0.00 0.00 0.00 2.52
3091 4383 4.227073 CCTCTTCCTTTCTCCCTCTTTCAT 59.773 45.833 0.00 0.00 0.00 2.57
3115 4877 3.225104 TGCTTGTTCCTTTCAATGCTCT 58.775 40.909 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.876198 CCGCCTCATTTTCCGCCG 61.876 66.667 0.00 0.00 0.00 6.46
30 31 0.820226 GAGCCCCAGAAAATGAAGCC 59.180 55.000 0.00 0.00 0.00 4.35
61 62 0.179045 CCGGTGACCATTCCCATCTC 60.179 60.000 1.11 0.00 0.00 2.75
80 82 2.158943 AGACCTAGCCTAAAATGACCGC 60.159 50.000 0.00 0.00 0.00 5.68
81 83 3.821421 AGACCTAGCCTAAAATGACCG 57.179 47.619 0.00 0.00 0.00 4.79
133 135 9.511144 CCCATTTAAACGGAGTAAAATCATTAC 57.489 33.333 0.86 0.00 45.00 1.89
140 142 8.866970 ATACTTCCCATTTAAACGGAGTAAAA 57.133 30.769 0.86 0.00 45.00 1.52
158 161 8.672823 ATTTTTACATAGAACCGGATACTTCC 57.327 34.615 9.46 0.00 38.81 3.46
209 212 4.231718 TGCAAACTCAAATAAACCGGAC 57.768 40.909 9.46 0.00 0.00 4.79
210 213 4.520874 TGATGCAAACTCAAATAAACCGGA 59.479 37.500 9.46 0.00 0.00 5.14
236 239 8.623310 ACGAATTTTAACGAAAACTGAACAAT 57.377 26.923 0.00 0.00 37.37 2.71
242 245 9.894439 ATTTCAAACGAATTTTAACGAAAACTG 57.106 25.926 0.00 0.00 37.37 3.16
243 246 9.894439 CATTTCAAACGAATTTTAACGAAAACT 57.106 25.926 0.00 0.00 37.37 2.66
244 247 9.678247 ACATTTCAAACGAATTTTAACGAAAAC 57.322 25.926 0.00 0.00 37.37 2.43
249 252 7.935211 CGGTTACATTTCAAACGAATTTTAACG 59.065 33.333 0.00 0.00 38.35 3.18
250 253 8.209214 CCGGTTACATTTCAAACGAATTTTAAC 58.791 33.333 0.00 0.00 38.35 2.01
260 263 6.183360 TGCATCTATCCGGTTACATTTCAAAC 60.183 38.462 0.00 0.00 0.00 2.93
263 266 5.029807 TGCATCTATCCGGTTACATTTCA 57.970 39.130 0.00 0.00 0.00 2.69
270 273 6.791867 AAGCTATATGCATCTATCCGGTTA 57.208 37.500 0.19 0.00 45.94 2.85
274 277 8.554528 CCATTTAAAGCTATATGCATCTATCCG 58.445 37.037 0.19 0.00 45.94 4.18
284 287 3.758554 AGCCGGCCATTTAAAGCTATATG 59.241 43.478 26.15 0.00 0.00 1.78
285 288 4.010349 GAGCCGGCCATTTAAAGCTATAT 58.990 43.478 26.15 0.00 0.00 0.86
286 289 3.072476 AGAGCCGGCCATTTAAAGCTATA 59.928 43.478 26.15 0.00 0.00 1.31
295 298 1.228552 ACACAAGAGCCGGCCATTT 60.229 52.632 26.15 12.65 0.00 2.32
296 299 1.675641 GACACAAGAGCCGGCCATT 60.676 57.895 26.15 16.07 0.00 3.16
305 308 0.387367 CGAGTCCACGGACACAAGAG 60.387 60.000 18.21 0.00 46.76 2.85
307 310 0.663568 GACGAGTCCACGGACACAAG 60.664 60.000 18.21 8.46 46.76 3.16
308 311 1.361271 GACGAGTCCACGGACACAA 59.639 57.895 18.21 0.00 46.76 3.33
327 336 0.464735 TGTCCGTTCACAAACTGGGG 60.465 55.000 0.00 0.00 33.00 4.96
331 340 0.812412 CCCGTGTCCGTTCACAAACT 60.812 55.000 7.72 0.00 38.12 2.66
341 350 3.173668 TCAAATTATCTCCCGTGTCCG 57.826 47.619 0.00 0.00 0.00 4.79
345 354 4.576053 TGCATCTTCAAATTATCTCCCGTG 59.424 41.667 0.00 0.00 0.00 4.94
347 356 4.818546 AGTGCATCTTCAAATTATCTCCCG 59.181 41.667 0.00 0.00 0.00 5.14
351 360 7.308229 GCGGATTAGTGCATCTTCAAATTATCT 60.308 37.037 0.00 0.00 0.00 1.98
353 362 6.488006 AGCGGATTAGTGCATCTTCAAATTAT 59.512 34.615 0.00 0.00 0.00 1.28
354 363 5.822519 AGCGGATTAGTGCATCTTCAAATTA 59.177 36.000 0.00 0.00 0.00 1.40
357 366 3.609853 AGCGGATTAGTGCATCTTCAAA 58.390 40.909 0.00 0.00 0.00 2.69
371 394 1.603802 CATTATGCAACCGAGCGGATT 59.396 47.619 16.83 3.55 38.96 3.01
387 410 8.588472 AGTGACAGCTTATCATATACTGCATTA 58.412 33.333 0.85 0.00 31.46 1.90
402 425 3.813166 GTGTGGCTAAAAGTGACAGCTTA 59.187 43.478 0.00 0.00 35.60 3.09
476 499 2.617274 GCACCGGCCTTGTGTCTTC 61.617 63.158 19.70 3.77 36.11 2.87
487 510 3.264897 CGCTGTAGATGCACCGGC 61.265 66.667 0.00 0.00 41.68 6.13
488 511 1.878522 GTCGCTGTAGATGCACCGG 60.879 63.158 0.00 0.00 0.00 5.28
675 703 3.748048 CCACTGCTCGGTTGGATTATATG 59.252 47.826 0.00 0.00 0.00 1.78
705 734 1.669115 CCGGATAAGGATGCAGCGG 60.669 63.158 0.00 0.00 0.00 5.52
740 769 0.181350 AAGATTGGATGACGAGCCCC 59.819 55.000 0.00 0.00 0.00 5.80
768 798 4.314440 TGAGCCGAACCAGCGCTT 62.314 61.111 7.50 0.00 34.64 4.68
786 816 1.164041 AGCTTGTTTTGACCGGACGG 61.164 55.000 9.46 9.56 42.03 4.79
813 843 2.166459 CCTCTAGAAATGTCAGTGGCGA 59.834 50.000 0.00 0.00 0.00 5.54
816 846 2.237143 TGGCCTCTAGAAATGTCAGTGG 59.763 50.000 3.32 0.00 0.00 4.00
820 850 1.405526 GCGTGGCCTCTAGAAATGTCA 60.406 52.381 3.32 0.00 0.00 3.58
822 852 0.107654 GGCGTGGCCTCTAGAAATGT 60.108 55.000 3.32 0.00 46.69 2.71
823 853 2.695314 GGCGTGGCCTCTAGAAATG 58.305 57.895 3.32 0.00 46.69 2.32
862 893 4.025145 GTCCAACACAGTGTACTAGCAAAC 60.025 45.833 6.63 0.00 0.00 2.93
908 939 0.248661 CGCTCTAGATCACACACGGG 60.249 60.000 0.00 0.00 0.00 5.28
961 992 2.689983 GGGGACACTTAAATCATGCAGG 59.310 50.000 0.00 0.00 0.00 4.85
1030 1061 1.883926 TGTCACTCGCTTGTAGCACTA 59.116 47.619 0.00 0.00 42.58 2.74
1034 1065 2.095161 ACTAGTGTCACTCGCTTGTAGC 60.095 50.000 9.26 0.00 39.84 3.58
1052 1084 3.181475 GGATCTGATCGGTGCAAGAACTA 60.181 47.826 11.28 0.00 0.00 2.24
1215 1247 1.327690 GCCATGTCGGTACCTCTGGA 61.328 60.000 17.98 3.59 36.97 3.86
1216 1248 1.144057 GCCATGTCGGTACCTCTGG 59.856 63.158 10.90 11.71 36.97 3.86
1273 1317 7.521871 AGCATCAAATCTTCTTCTGAAAACT 57.478 32.000 0.00 0.00 0.00 2.66
1312 1356 7.593644 GTCAGTTCACACAATAATAAACCCAAC 59.406 37.037 0.00 0.00 0.00 3.77
1321 1365 2.415168 CGCCGTCAGTTCACACAATAAT 59.585 45.455 0.00 0.00 0.00 1.28
1322 1366 1.795872 CGCCGTCAGTTCACACAATAA 59.204 47.619 0.00 0.00 0.00 1.40
1323 1367 1.424403 CGCCGTCAGTTCACACAATA 58.576 50.000 0.00 0.00 0.00 1.90
1338 1382 1.091537 AACATCCATGTAAACCGCCG 58.908 50.000 0.00 0.00 40.80 6.46
1575 1619 9.430623 GAGATATATAGATCATGAGCTAGCGTA 57.569 37.037 23.78 16.24 32.35 4.42
1576 1620 7.936301 TGAGATATATAGATCATGAGCTAGCGT 59.064 37.037 23.78 14.84 32.35 5.07
1577 1621 8.229811 GTGAGATATATAGATCATGAGCTAGCG 58.770 40.741 23.78 0.00 32.35 4.26
1578 1622 8.229811 CGTGAGATATATAGATCATGAGCTAGC 58.770 40.741 23.78 6.62 32.35 3.42
1595 1639 8.561738 AAAACTGATTTTGTACCGTGAGATAT 57.438 30.769 0.00 0.00 36.64 1.63
1596 1640 7.972832 AAAACTGATTTTGTACCGTGAGATA 57.027 32.000 0.00 0.00 36.64 1.98
1597 1641 6.877611 AAAACTGATTTTGTACCGTGAGAT 57.122 33.333 0.00 0.00 36.64 2.75
1598 1642 6.987992 ACTAAAACTGATTTTGTACCGTGAGA 59.012 34.615 0.00 0.00 38.50 3.27
1599 1643 7.186021 ACTAAAACTGATTTTGTACCGTGAG 57.814 36.000 0.00 0.00 38.50 3.51
1604 1648 8.550376 TCGTGTTACTAAAACTGATTTTGTACC 58.450 33.333 4.71 0.25 38.41 3.34
1618 1662 6.435277 AGTTCCCAGTAGATCGTGTTACTAAA 59.565 38.462 0.00 0.00 0.00 1.85
1622 1666 4.715527 AGTTCCCAGTAGATCGTGTTAC 57.284 45.455 0.00 0.00 0.00 2.50
1645 1689 1.982660 TTGCCATGTTCACCCGTTTA 58.017 45.000 0.00 0.00 0.00 2.01
1667 1711 2.152489 CGTACGTGGCAGCGTTATTATC 59.848 50.000 17.48 4.89 43.04 1.75
1719 1780 0.606673 GGTGGTTGCTCCTTGTCCTC 60.607 60.000 0.80 0.00 37.07 3.71
1725 1786 0.109723 TTTAGCGGTGGTTGCTCCTT 59.890 50.000 0.00 0.00 42.85 3.36
1766 1827 1.073722 TTGAGCACCCTGCCTTCAG 59.926 57.895 0.00 0.00 46.52 3.02
1772 1833 0.031178 CAAGTTGTTGAGCACCCTGC 59.969 55.000 0.00 0.00 45.46 4.85
1837 1898 1.400990 CGGACAGCAACGTACGCTAC 61.401 60.000 16.72 4.41 36.22 3.58
1878 1939 5.811613 ACTAGTAGACAGTAGTACGAAGCTG 59.188 44.000 3.59 7.23 38.83 4.24
1915 1977 2.945668 GAGCATACCGAGCCAAGAAAAT 59.054 45.455 0.00 0.00 0.00 1.82
1924 1986 3.333969 GCAGCGAGCATACCGAGC 61.334 66.667 0.00 0.00 44.79 5.03
1974 2038 0.723414 CACGCATGGAGCTTACACAG 59.277 55.000 0.00 0.00 42.61 3.66
1981 2045 2.113860 ATTTACACACGCATGGAGCT 57.886 45.000 0.00 0.00 42.61 4.09
1990 2054 3.734231 ACACACGAGAGAATTTACACACG 59.266 43.478 0.00 0.00 0.00 4.49
1993 2057 4.084537 CCACACACACGAGAGAATTTACAC 60.085 45.833 0.00 0.00 0.00 2.90
1994 2058 4.055360 CCACACACACGAGAGAATTTACA 58.945 43.478 0.00 0.00 0.00 2.41
1995 2059 4.056050 ACCACACACACGAGAGAATTTAC 58.944 43.478 0.00 0.00 0.00 2.01
1997 2061 2.872245 CACCACACACACGAGAGAATTT 59.128 45.455 0.00 0.00 0.00 1.82
1998 2062 2.158957 ACACCACACACACGAGAGAATT 60.159 45.455 0.00 0.00 0.00 2.17
1999 2063 1.412710 ACACCACACACACGAGAGAAT 59.587 47.619 0.00 0.00 0.00 2.40
2000 2064 0.821517 ACACCACACACACGAGAGAA 59.178 50.000 0.00 0.00 0.00 2.87
2001 2065 0.102300 CACACCACACACACGAGAGA 59.898 55.000 0.00 0.00 0.00 3.10
2002 2066 0.875908 CCACACCACACACACGAGAG 60.876 60.000 0.00 0.00 0.00 3.20
2023 2089 7.088589 CCATAGGTGGTTAAACATTGAGAAG 57.911 40.000 0.00 0.00 40.83 2.85
2045 2117 5.012664 TCTGAGGCTGTTATTGTCTTTACCA 59.987 40.000 0.00 0.00 0.00 3.25
2046 2118 5.488341 TCTGAGGCTGTTATTGTCTTTACC 58.512 41.667 0.00 0.00 0.00 2.85
2047 2119 5.064071 GCTCTGAGGCTGTTATTGTCTTTAC 59.936 44.000 6.83 0.00 0.00 2.01
2049 2121 4.006319 GCTCTGAGGCTGTTATTGTCTTT 58.994 43.478 6.83 0.00 0.00 2.52
2153 2227 8.428186 AGTTCAGTTTTTCGTTCATTGTACTA 57.572 30.769 0.00 0.00 0.00 1.82
2173 2247 0.956633 ACCGTTCTGCGTCTAGTTCA 59.043 50.000 0.00 0.00 39.32 3.18
2176 2250 2.294233 TGTTAACCGTTCTGCGTCTAGT 59.706 45.455 2.48 0.00 39.32 2.57
2177 2251 2.937591 TGTTAACCGTTCTGCGTCTAG 58.062 47.619 2.48 0.00 39.32 2.43
2178 2252 3.311106 CTTGTTAACCGTTCTGCGTCTA 58.689 45.455 2.48 0.00 39.32 2.59
2179 2253 2.132762 CTTGTTAACCGTTCTGCGTCT 58.867 47.619 2.48 0.00 39.32 4.18
2180 2254 1.193874 CCTTGTTAACCGTTCTGCGTC 59.806 52.381 2.48 0.00 39.32 5.19
2181 2255 1.202557 TCCTTGTTAACCGTTCTGCGT 60.203 47.619 2.48 0.00 39.32 5.24
2182 2256 1.504359 TCCTTGTTAACCGTTCTGCG 58.496 50.000 2.48 0.00 40.95 5.18
2183 2257 5.616488 TTTATCCTTGTTAACCGTTCTGC 57.384 39.130 2.48 0.00 0.00 4.26
2220 2295 7.334421 CAGCAGAAAAAGAACAAGGCTAGTATA 59.666 37.037 0.00 0.00 0.00 1.47
2231 2306 2.639065 ACGGACAGCAGAAAAAGAACA 58.361 42.857 0.00 0.00 0.00 3.18
2238 2313 0.756294 TCTCCAACGGACAGCAGAAA 59.244 50.000 0.00 0.00 0.00 2.52
2242 2317 3.071479 GTTTAATCTCCAACGGACAGCA 58.929 45.455 0.00 0.00 0.00 4.41
2246 2321 6.730960 TGTAATGTTTAATCTCCAACGGAC 57.269 37.500 0.00 0.00 0.00 4.79
2348 2423 9.474313 TGGTATTTCAGTTTTCTATAAATGCCT 57.526 29.630 12.34 0.00 41.73 4.75
2388 2463 9.530129 CGTAGTCTCTTGTAATTGATTTTTGTC 57.470 33.333 0.00 0.00 0.00 3.18
2389 2464 9.268268 TCGTAGTCTCTTGTAATTGATTTTTGT 57.732 29.630 0.00 0.00 0.00 2.83
2390 2465 9.530129 GTCGTAGTCTCTTGTAATTGATTTTTG 57.470 33.333 0.00 0.00 0.00 2.44
2391 2466 9.490379 AGTCGTAGTCTCTTGTAATTGATTTTT 57.510 29.630 0.00 0.00 0.00 1.94
2392 2467 9.490379 AAGTCGTAGTCTCTTGTAATTGATTTT 57.510 29.630 0.00 0.00 0.00 1.82
2393 2468 9.490379 AAAGTCGTAGTCTCTTGTAATTGATTT 57.510 29.630 0.00 0.00 0.00 2.17
2394 2469 9.490379 AAAAGTCGTAGTCTCTTGTAATTGATT 57.510 29.630 0.00 0.00 0.00 2.57
2402 2477 8.460428 CCTTCTATAAAAGTCGTAGTCTCTTGT 58.540 37.037 0.00 0.00 0.00 3.16
2403 2478 7.432838 GCCTTCTATAAAAGTCGTAGTCTCTTG 59.567 40.741 0.00 0.00 0.00 3.02
2404 2479 7.122353 TGCCTTCTATAAAAGTCGTAGTCTCTT 59.878 37.037 0.00 0.00 0.00 2.85
2405 2480 6.602406 TGCCTTCTATAAAAGTCGTAGTCTCT 59.398 38.462 0.00 0.00 0.00 3.10
2406 2481 6.793349 TGCCTTCTATAAAAGTCGTAGTCTC 58.207 40.000 0.00 0.00 0.00 3.36
2407 2482 6.770746 TGCCTTCTATAAAAGTCGTAGTCT 57.229 37.500 0.00 0.00 0.00 3.24
2408 2483 9.525409 TTTATGCCTTCTATAAAAGTCGTAGTC 57.475 33.333 0.00 0.00 29.65 2.59
2412 2487 8.958119 TGATTTATGCCTTCTATAAAAGTCGT 57.042 30.769 0.00 0.00 34.67 4.34
2422 2497 9.905713 AGTCTTGTAATTGATTTATGCCTTCTA 57.094 29.630 0.00 0.00 0.00 2.10
2423 2498 8.814038 AGTCTTGTAATTGATTTATGCCTTCT 57.186 30.769 0.00 0.00 0.00 2.85
2424 2499 9.508567 GAAGTCTTGTAATTGATTTATGCCTTC 57.491 33.333 0.00 0.00 0.00 3.46
2425 2500 9.023962 TGAAGTCTTGTAATTGATTTATGCCTT 57.976 29.630 0.00 0.00 0.00 4.35
2426 2501 8.579850 TGAAGTCTTGTAATTGATTTATGCCT 57.420 30.769 0.00 0.00 0.00 4.75
2427 2502 9.076596 GTTGAAGTCTTGTAATTGATTTATGCC 57.923 33.333 0.00 0.00 0.00 4.40
2428 2503 9.846248 AGTTGAAGTCTTGTAATTGATTTATGC 57.154 29.630 0.00 0.00 0.00 3.14
2431 2506 9.677567 GCAAGTTGAAGTCTTGTAATTGATTTA 57.322 29.630 7.16 0.00 42.67 1.40
2432 2507 8.416329 AGCAAGTTGAAGTCTTGTAATTGATTT 58.584 29.630 7.16 0.00 42.67 2.17
2433 2508 7.864379 CAGCAAGTTGAAGTCTTGTAATTGATT 59.136 33.333 7.16 0.00 42.67 2.57
2434 2509 7.365741 CAGCAAGTTGAAGTCTTGTAATTGAT 58.634 34.615 7.16 0.35 42.67 2.57
2435 2510 6.728200 CAGCAAGTTGAAGTCTTGTAATTGA 58.272 36.000 7.16 0.00 42.67 2.57
2436 2511 5.400485 GCAGCAAGTTGAAGTCTTGTAATTG 59.600 40.000 7.16 0.00 42.67 2.32
2437 2512 5.067674 TGCAGCAAGTTGAAGTCTTGTAATT 59.932 36.000 7.16 0.00 42.67 1.40
2438 2513 4.580167 TGCAGCAAGTTGAAGTCTTGTAAT 59.420 37.500 7.16 0.00 42.67 1.89
2439 2514 3.944650 TGCAGCAAGTTGAAGTCTTGTAA 59.055 39.130 7.16 0.00 42.67 2.41
2440 2515 3.540617 TGCAGCAAGTTGAAGTCTTGTA 58.459 40.909 7.16 0.00 42.67 2.41
2441 2516 2.368439 TGCAGCAAGTTGAAGTCTTGT 58.632 42.857 7.16 0.00 42.67 3.16
2442 2517 3.425577 TTGCAGCAAGTTGAAGTCTTG 57.574 42.857 7.16 0.00 43.31 3.02
2443 2518 3.193267 TGTTTGCAGCAAGTTGAAGTCTT 59.807 39.130 8.12 0.00 0.00 3.01
2444 2519 2.754552 TGTTTGCAGCAAGTTGAAGTCT 59.245 40.909 8.12 0.00 0.00 3.24
2445 2520 3.149436 TGTTTGCAGCAAGTTGAAGTC 57.851 42.857 8.12 0.00 0.00 3.01
2446 2521 3.253230 GTTGTTTGCAGCAAGTTGAAGT 58.747 40.909 8.12 0.00 0.00 3.01
2447 2522 3.252400 TGTTGTTTGCAGCAAGTTGAAG 58.748 40.909 8.12 0.00 32.91 3.02
2448 2523 3.309961 TGTTGTTTGCAGCAAGTTGAA 57.690 38.095 8.12 0.00 32.91 2.69
2449 2524 3.309961 TTGTTGTTTGCAGCAAGTTGA 57.690 38.095 8.12 0.00 40.14 3.18
2454 2529 2.739885 ACACTTGTTGTTTGCAGCAA 57.260 40.000 2.83 2.83 42.19 3.91
2455 2530 2.752354 ACTACACTTGTTGTTTGCAGCA 59.248 40.909 0.00 0.00 39.91 4.41
2456 2531 3.420839 ACTACACTTGTTGTTTGCAGC 57.579 42.857 0.00 0.00 39.91 5.25
2457 2532 4.980590 TCAACTACACTTGTTGTTTGCAG 58.019 39.130 6.48 0.00 40.84 4.41
2458 2533 5.378292 TTCAACTACACTTGTTGTTTGCA 57.622 34.783 6.48 0.00 40.84 4.08
2459 2534 5.861787 AGTTTCAACTACACTTGTTGTTTGC 59.138 36.000 6.48 0.00 40.84 3.68
2460 2535 7.148820 CCAAGTTTCAACTACACTTGTTGTTTG 60.149 37.037 6.48 2.78 43.98 2.93
2461 2536 6.866248 CCAAGTTTCAACTACACTTGTTGTTT 59.134 34.615 6.48 0.00 43.98 2.83
2462 2537 6.386654 CCAAGTTTCAACTACACTTGTTGTT 58.613 36.000 9.72 3.72 43.98 2.83
2463 2538 5.621329 GCCAAGTTTCAACTACACTTGTTGT 60.621 40.000 9.72 0.00 43.98 3.32
2464 2539 4.798387 GCCAAGTTTCAACTACACTTGTTG 59.202 41.667 9.72 0.00 43.98 3.33
2465 2540 4.461081 TGCCAAGTTTCAACTACACTTGTT 59.539 37.500 9.72 0.00 43.98 2.83
2466 2541 4.013728 TGCCAAGTTTCAACTACACTTGT 58.986 39.130 9.72 0.00 43.98 3.16
2467 2542 4.630894 TGCCAAGTTTCAACTACACTTG 57.369 40.909 4.59 4.59 44.73 3.16
2468 2543 5.221244 GGAATGCCAAGTTTCAACTACACTT 60.221 40.000 0.00 0.00 38.57 3.16
2469 2544 4.278419 GGAATGCCAAGTTTCAACTACACT 59.722 41.667 0.00 0.00 38.57 3.55
2470 2545 4.037446 TGGAATGCCAAGTTTCAACTACAC 59.963 41.667 0.00 0.00 42.49 2.90
2471 2546 4.211125 TGGAATGCCAAGTTTCAACTACA 58.789 39.130 0.00 0.00 42.49 2.74
2472 2547 4.846779 TGGAATGCCAAGTTTCAACTAC 57.153 40.909 0.00 0.00 42.49 2.73
2485 2560 5.119931 TGTAATTATTGCGATGGAATGCC 57.880 39.130 0.00 0.00 0.00 4.40
2486 2561 6.475076 TGTTTGTAATTATTGCGATGGAATGC 59.525 34.615 0.00 0.00 0.00 3.56
2487 2562 7.984002 TGTTTGTAATTATTGCGATGGAATG 57.016 32.000 0.00 0.00 0.00 2.67
2488 2563 8.868916 GTTTGTTTGTAATTATTGCGATGGAAT 58.131 29.630 0.00 0.00 0.00 3.01
2489 2564 7.061210 CGTTTGTTTGTAATTATTGCGATGGAA 59.939 33.333 0.00 0.00 0.00 3.53
2490 2565 6.524933 CGTTTGTTTGTAATTATTGCGATGGA 59.475 34.615 0.00 0.00 0.00 3.41
2491 2566 6.524933 TCGTTTGTTTGTAATTATTGCGATGG 59.475 34.615 0.00 0.00 0.00 3.51
2492 2567 7.485825 TCGTTTGTTTGTAATTATTGCGATG 57.514 32.000 0.00 0.00 0.00 3.84
2493 2568 8.508800 TTTCGTTTGTTTGTAATTATTGCGAT 57.491 26.923 0.00 0.00 0.00 4.58
2494 2569 7.909777 TTTCGTTTGTTTGTAATTATTGCGA 57.090 28.000 0.00 0.00 0.00 5.10
2495 2570 8.958229 TTTTTCGTTTGTTTGTAATTATTGCG 57.042 26.923 0.00 0.00 0.00 4.85
2496 2571 9.364110 CCTTTTTCGTTTGTTTGTAATTATTGC 57.636 29.630 0.00 0.00 0.00 3.56
2499 2574 9.251792 GGACCTTTTTCGTTTGTTTGTAATTAT 57.748 29.630 0.00 0.00 0.00 1.28
2500 2575 8.468399 AGGACCTTTTTCGTTTGTTTGTAATTA 58.532 29.630 0.00 0.00 0.00 1.40
2501 2576 7.276878 CAGGACCTTTTTCGTTTGTTTGTAATT 59.723 33.333 0.00 0.00 0.00 1.40
2502 2577 6.754675 CAGGACCTTTTTCGTTTGTTTGTAAT 59.245 34.615 0.00 0.00 0.00 1.89
2503 2578 6.094061 CAGGACCTTTTTCGTTTGTTTGTAA 58.906 36.000 0.00 0.00 0.00 2.41
2504 2579 5.642686 CAGGACCTTTTTCGTTTGTTTGTA 58.357 37.500 0.00 0.00 0.00 2.41
2505 2580 4.490743 CAGGACCTTTTTCGTTTGTTTGT 58.509 39.130 0.00 0.00 0.00 2.83
2506 2581 3.305897 GCAGGACCTTTTTCGTTTGTTTG 59.694 43.478 0.00 0.00 0.00 2.93
2507 2582 3.517602 GCAGGACCTTTTTCGTTTGTTT 58.482 40.909 0.00 0.00 0.00 2.83
2508 2583 2.159156 GGCAGGACCTTTTTCGTTTGTT 60.159 45.455 0.00 0.00 34.51 2.83
2509 2584 1.407618 GGCAGGACCTTTTTCGTTTGT 59.592 47.619 0.00 0.00 34.51 2.83
2510 2585 2.134201 GGCAGGACCTTTTTCGTTTG 57.866 50.000 0.00 0.00 34.51 2.93
2520 2595 4.263243 GATGATTAGCATAAGGCAGGACCT 60.263 45.833 0.00 0.00 44.83 3.85
2522 2597 9.414163 AGCTAGATGATTAGCATAAGGCAGGAC 62.414 44.444 7.66 0.00 46.69 3.85
2523 2598 7.487659 AGCTAGATGATTAGCATAAGGCAGGA 61.488 42.308 7.66 0.00 46.69 3.86
2524 2599 5.338219 AGCTAGATGATTAGCATAAGGCAGG 60.338 44.000 7.66 0.00 46.69 4.85
2525 2600 5.581479 CAGCTAGATGATTAGCATAAGGCAG 59.419 44.000 0.40 0.00 46.69 4.85
2526 2601 5.485620 CAGCTAGATGATTAGCATAAGGCA 58.514 41.667 0.40 0.00 46.69 4.75
2527 2602 4.332268 GCAGCTAGATGATTAGCATAAGGC 59.668 45.833 13.26 0.00 46.69 4.35
2528 2603 4.565962 CGCAGCTAGATGATTAGCATAAGG 59.434 45.833 13.26 0.00 46.69 2.69
2529 2604 5.167121 ACGCAGCTAGATGATTAGCATAAG 58.833 41.667 13.26 0.00 46.69 1.73
2530 2605 5.139435 ACGCAGCTAGATGATTAGCATAA 57.861 39.130 13.26 0.00 46.69 1.90
2531 2606 4.218417 TGACGCAGCTAGATGATTAGCATA 59.782 41.667 13.26 0.00 46.69 3.14
2532 2607 3.006217 TGACGCAGCTAGATGATTAGCAT 59.994 43.478 13.26 0.00 46.69 3.79
2533 2608 2.362077 TGACGCAGCTAGATGATTAGCA 59.638 45.455 13.26 0.00 46.69 3.49
2534 2609 2.728839 GTGACGCAGCTAGATGATTAGC 59.271 50.000 13.26 0.00 45.05 3.09
2535 2610 3.969899 TGTGACGCAGCTAGATGATTAG 58.030 45.455 13.26 1.99 0.00 1.73
2536 2611 4.112634 GTTGTGACGCAGCTAGATGATTA 58.887 43.478 13.26 0.00 0.00 1.75
2537 2612 2.932614 GTTGTGACGCAGCTAGATGATT 59.067 45.455 13.26 0.00 0.00 2.57
2538 2613 2.094026 TGTTGTGACGCAGCTAGATGAT 60.094 45.455 13.26 0.00 0.00 2.45
2539 2614 1.272212 TGTTGTGACGCAGCTAGATGA 59.728 47.619 13.26 0.00 0.00 2.92
2540 2615 1.713597 TGTTGTGACGCAGCTAGATG 58.286 50.000 2.90 2.90 0.00 2.90
2541 2616 2.455674 TTGTTGTGACGCAGCTAGAT 57.544 45.000 4.44 0.00 0.00 1.98
2542 2617 2.232756 TTTGTTGTGACGCAGCTAGA 57.767 45.000 4.44 0.00 0.00 2.43
2543 2618 2.287915 ACTTTTGTTGTGACGCAGCTAG 59.712 45.455 4.44 2.47 0.00 3.42
2544 2619 2.285083 ACTTTTGTTGTGACGCAGCTA 58.715 42.857 4.44 0.00 0.00 3.32
2545 2620 1.094785 ACTTTTGTTGTGACGCAGCT 58.905 45.000 4.44 0.00 0.00 4.24
2546 2621 2.602217 CCTACTTTTGTTGTGACGCAGC 60.602 50.000 0.00 0.00 0.00 5.25
2547 2622 2.612212 ACCTACTTTTGTTGTGACGCAG 59.388 45.455 0.00 0.00 0.00 5.18
2548 2623 2.610374 GACCTACTTTTGTTGTGACGCA 59.390 45.455 0.00 0.00 0.00 5.24
2549 2624 2.348218 CGACCTACTTTTGTTGTGACGC 60.348 50.000 0.00 0.00 0.00 5.19
2550 2625 2.348218 GCGACCTACTTTTGTTGTGACG 60.348 50.000 0.00 0.00 0.00 4.35
2551 2626 2.032290 GGCGACCTACTTTTGTTGTGAC 60.032 50.000 0.00 0.00 0.00 3.67
2552 2627 2.158871 AGGCGACCTACTTTTGTTGTGA 60.159 45.455 0.00 0.00 28.47 3.58
2553 2628 2.218603 AGGCGACCTACTTTTGTTGTG 58.781 47.619 0.00 0.00 28.47 3.33
2554 2629 2.490991 GAGGCGACCTACTTTTGTTGT 58.509 47.619 0.00 0.00 31.76 3.32
2555 2630 1.459592 CGAGGCGACCTACTTTTGTTG 59.540 52.381 0.00 0.00 31.76 3.33
2556 2631 1.342174 TCGAGGCGACCTACTTTTGTT 59.658 47.619 0.00 0.00 31.76 2.83
2557 2632 0.963962 TCGAGGCGACCTACTTTTGT 59.036 50.000 0.00 0.00 31.76 2.83
2558 2633 1.993370 CTTCGAGGCGACCTACTTTTG 59.007 52.381 0.00 0.00 34.89 2.44
2559 2634 1.891150 TCTTCGAGGCGACCTACTTTT 59.109 47.619 0.00 0.00 34.89 2.27
2560 2635 1.473278 CTCTTCGAGGCGACCTACTTT 59.527 52.381 0.00 0.00 34.89 2.66
2561 2636 1.096416 CTCTTCGAGGCGACCTACTT 58.904 55.000 0.00 0.00 34.89 2.24
2562 2637 1.378124 GCTCTTCGAGGCGACCTACT 61.378 60.000 0.00 0.00 34.89 2.57
2563 2638 1.064458 GCTCTTCGAGGCGACCTAC 59.936 63.158 0.00 0.00 34.89 3.18
2564 2639 0.963856 TTGCTCTTCGAGGCGACCTA 60.964 55.000 0.00 0.00 34.89 3.08
2565 2640 1.608717 ATTGCTCTTCGAGGCGACCT 61.609 55.000 0.00 0.00 34.89 3.85
2566 2641 0.102481 TATTGCTCTTCGAGGCGACC 59.898 55.000 0.00 0.00 34.89 4.79
2567 2642 1.922570 TTATTGCTCTTCGAGGCGAC 58.077 50.000 0.00 0.00 34.89 5.19
2568 2643 2.665649 TTTATTGCTCTTCGAGGCGA 57.334 45.000 0.00 0.00 0.00 5.54
2569 2644 2.221981 GGATTTATTGCTCTTCGAGGCG 59.778 50.000 0.00 0.00 0.00 5.52
2570 2645 3.002759 GTGGATTTATTGCTCTTCGAGGC 59.997 47.826 0.00 0.00 0.00 4.70
2571 2646 3.561725 GGTGGATTTATTGCTCTTCGAGG 59.438 47.826 0.00 0.00 0.00 4.63
2572 2647 3.561725 GGGTGGATTTATTGCTCTTCGAG 59.438 47.826 0.00 0.00 0.00 4.04
2573 2648 3.054728 TGGGTGGATTTATTGCTCTTCGA 60.055 43.478 0.00 0.00 0.00 3.71
2574 2649 3.278574 TGGGTGGATTTATTGCTCTTCG 58.721 45.455 0.00 0.00 0.00 3.79
2575 2650 5.659440 TTTGGGTGGATTTATTGCTCTTC 57.341 39.130 0.00 0.00 0.00 2.87
2576 2651 6.352137 GGATTTTGGGTGGATTTATTGCTCTT 60.352 38.462 0.00 0.00 0.00 2.85
2577 2652 5.129320 GGATTTTGGGTGGATTTATTGCTCT 59.871 40.000 0.00 0.00 0.00 4.09
2578 2653 5.359756 GGATTTTGGGTGGATTTATTGCTC 58.640 41.667 0.00 0.00 0.00 4.26
2579 2654 4.164030 GGGATTTTGGGTGGATTTATTGCT 59.836 41.667 0.00 0.00 0.00 3.91
2580 2655 4.164030 AGGGATTTTGGGTGGATTTATTGC 59.836 41.667 0.00 0.00 0.00 3.56
2581 2656 5.955961 AGGGATTTTGGGTGGATTTATTG 57.044 39.130 0.00 0.00 0.00 1.90
2582 2657 6.385759 GGTAAGGGATTTTGGGTGGATTTATT 59.614 38.462 0.00 0.00 0.00 1.40
2583 2658 5.903010 GGTAAGGGATTTTGGGTGGATTTAT 59.097 40.000 0.00 0.00 0.00 1.40
2584 2659 5.222568 TGGTAAGGGATTTTGGGTGGATTTA 60.223 40.000 0.00 0.00 0.00 1.40
2585 2660 4.101114 GGTAAGGGATTTTGGGTGGATTT 58.899 43.478 0.00 0.00 0.00 2.17
2586 2661 3.078305 TGGTAAGGGATTTTGGGTGGATT 59.922 43.478 0.00 0.00 0.00 3.01
2587 2662 2.657459 TGGTAAGGGATTTTGGGTGGAT 59.343 45.455 0.00 0.00 0.00 3.41
2588 2663 2.074579 TGGTAAGGGATTTTGGGTGGA 58.925 47.619 0.00 0.00 0.00 4.02
2589 2664 2.565391 GTTGGTAAGGGATTTTGGGTGG 59.435 50.000 0.00 0.00 0.00 4.61
2590 2665 2.230266 CGTTGGTAAGGGATTTTGGGTG 59.770 50.000 0.00 0.00 0.00 4.61
2591 2666 2.521126 CGTTGGTAAGGGATTTTGGGT 58.479 47.619 0.00 0.00 0.00 4.51
2592 2667 1.203758 GCGTTGGTAAGGGATTTTGGG 59.796 52.381 0.00 0.00 0.00 4.12
2593 2668 1.889829 TGCGTTGGTAAGGGATTTTGG 59.110 47.619 0.00 0.00 0.00 3.28
2594 2669 2.556622 AGTGCGTTGGTAAGGGATTTTG 59.443 45.455 0.00 0.00 0.00 2.44
2595 2670 2.871453 AGTGCGTTGGTAAGGGATTTT 58.129 42.857 0.00 0.00 0.00 1.82
2596 2671 2.579410 AGTGCGTTGGTAAGGGATTT 57.421 45.000 0.00 0.00 0.00 2.17
2597 2672 2.355412 GGTAGTGCGTTGGTAAGGGATT 60.355 50.000 0.00 0.00 0.00 3.01
2598 2673 1.208776 GGTAGTGCGTTGGTAAGGGAT 59.791 52.381 0.00 0.00 0.00 3.85
2599 2674 0.609662 GGTAGTGCGTTGGTAAGGGA 59.390 55.000 0.00 0.00 0.00 4.20
2600 2675 0.322322 TGGTAGTGCGTTGGTAAGGG 59.678 55.000 0.00 0.00 0.00 3.95
2601 2676 1.001633 AGTGGTAGTGCGTTGGTAAGG 59.998 52.381 0.00 0.00 0.00 2.69
2602 2677 2.450609 AGTGGTAGTGCGTTGGTAAG 57.549 50.000 0.00 0.00 0.00 2.34
2603 2678 4.540359 AATAGTGGTAGTGCGTTGGTAA 57.460 40.909 0.00 0.00 0.00 2.85
2604 2679 4.706476 AGTAATAGTGGTAGTGCGTTGGTA 59.294 41.667 0.00 0.00 0.00 3.25
2605 2680 3.512724 AGTAATAGTGGTAGTGCGTTGGT 59.487 43.478 0.00 0.00 0.00 3.67
2606 2681 4.119442 AGTAATAGTGGTAGTGCGTTGG 57.881 45.455 0.00 0.00 0.00 3.77
2607 2682 5.888105 AGTAGTAATAGTGGTAGTGCGTTG 58.112 41.667 0.00 0.00 0.00 4.10
2608 2683 6.261826 CCTAGTAGTAATAGTGGTAGTGCGTT 59.738 42.308 4.09 0.00 0.00 4.84
2609 2684 5.762218 CCTAGTAGTAATAGTGGTAGTGCGT 59.238 44.000 4.09 0.00 0.00 5.24
2610 2685 5.994054 TCCTAGTAGTAATAGTGGTAGTGCG 59.006 44.000 4.09 0.00 0.00 5.34
2611 2686 7.814264 TTCCTAGTAGTAATAGTGGTAGTGC 57.186 40.000 4.09 0.00 0.00 4.40
2614 2689 9.694137 GCATTTTCCTAGTAGTAATAGTGGTAG 57.306 37.037 4.09 0.00 0.00 3.18
2615 2690 9.430399 AGCATTTTCCTAGTAGTAATAGTGGTA 57.570 33.333 4.09 0.00 0.00 3.25
2616 2691 8.320338 AGCATTTTCCTAGTAGTAATAGTGGT 57.680 34.615 4.09 0.00 0.00 4.16
2658 2742 5.781306 TGGGGTCTATAACAAACACTACTGA 59.219 40.000 0.00 0.00 0.00 3.41
2665 2749 4.986054 AGTGTGGGGTCTATAACAAACA 57.014 40.909 0.00 0.00 0.00 2.83
2675 2759 5.365895 GGTAATTATCAGTAGTGTGGGGTCT 59.634 44.000 0.00 0.00 0.00 3.85
2705 2789 6.260493 ACCAGTAGCGTGTTTTATAACAAACA 59.740 34.615 0.00 0.00 45.33 2.83
2718 2802 7.199541 CTACTATGTTATACCAGTAGCGTGT 57.800 40.000 0.00 0.00 35.48 4.49
2732 2816 5.122711 GGCCTTCAAAAACGCTACTATGTTA 59.877 40.000 0.00 0.00 0.00 2.41
2759 2850 3.134574 TGTGGCAAACTTACCAGTAGG 57.865 47.619 0.00 0.00 36.38 3.18
2785 2876 8.752254 CGCTACTAATATTTCTTTGTCGAATGA 58.248 33.333 0.00 0.00 0.00 2.57
2788 2879 8.470040 AACGCTACTAATATTTCTTTGTCGAA 57.530 30.769 0.00 0.00 0.00 3.71
2789 2880 8.377681 CAAACGCTACTAATATTTCTTTGTCGA 58.622 33.333 0.00 0.00 0.00 4.20
2807 2898 4.801891 CACTGGTTAGACTACAAACGCTA 58.198 43.478 0.00 0.00 0.00 4.26
2828 2919 7.597743 GCTACAACTACTTTCTTAACAGTAGCA 59.402 37.037 1.44 0.00 44.43 3.49
3002 3442 0.747255 CTGGCGACCATAGCAGTAGT 59.253 55.000 0.00 0.00 36.08 2.73
3070 4357 5.097234 AGATGAAAGAGGGAGAAAGGAAGA 58.903 41.667 0.00 0.00 0.00 2.87
3084 4371 5.593909 TGAAAGGAACAAGCAAGATGAAAGA 59.406 36.000 0.00 0.00 0.00 2.52
3088 4380 5.775686 CATTGAAAGGAACAAGCAAGATGA 58.224 37.500 0.00 0.00 0.00 2.92
3091 4383 3.638160 AGCATTGAAAGGAACAAGCAAGA 59.362 39.130 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.