Multiple sequence alignment - TraesCS4A01G243800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G243800 chr4A 100.000 3235 0 0 1 3235 554557280 554560514 0.000000e+00 5975
1 TraesCS4A01G243800 chr4A 96.234 1195 34 8 877 2065 554542522 554543711 0.000000e+00 1947
2 TraesCS4A01G243800 chr4A 93.789 1288 62 8 799 2069 554629559 554630845 0.000000e+00 1919
3 TraesCS4A01G243800 chr4A 93.401 788 43 6 34 817 554622514 554623296 0.000000e+00 1158
4 TraesCS4A01G243800 chr4A 89.620 684 42 13 2178 2849 554543861 554544527 0.000000e+00 843
5 TraesCS4A01G243800 chr4A 86.478 673 47 18 2206 2849 554631045 554631702 0.000000e+00 699
6 TraesCS4A01G243800 chr4A 89.251 307 15 9 544 843 554631885 554632180 5.100000e-98 368
7 TraesCS4A01G243800 chr4A 94.787 211 11 0 3025 3235 300435150 300435360 2.410000e-86 329
8 TraesCS4A01G243800 chr4B 92.683 1189 79 4 885 2066 65165200 65164013 0.000000e+00 1707
9 TraesCS4A01G243800 chr4B 91.894 1209 79 7 878 2069 65543217 65542011 0.000000e+00 1672
10 TraesCS4A01G243800 chr4B 92.105 1178 75 9 877 2042 65645198 65644027 0.000000e+00 1644
11 TraesCS4A01G243800 chr4B 92.072 1173 78 7 911 2069 65115911 65114740 0.000000e+00 1637
12 TraesCS4A01G243800 chr4B 92.301 1143 77 5 909 2042 64808849 64807709 0.000000e+00 1613
13 TraesCS4A01G243800 chr4B 92.844 1104 75 2 885 1985 64827630 64826528 0.000000e+00 1598
14 TraesCS4A01G243800 chr4B 85.556 810 73 24 2068 2857 64826398 64825613 0.000000e+00 808
15 TraesCS4A01G243800 chr4B 85.450 811 73 23 2068 2857 65163940 65163154 0.000000e+00 802
16 TraesCS4A01G243800 chr4B 85.430 803 77 20 2068 2848 65114661 65113877 0.000000e+00 798
17 TraesCS4A01G243800 chr4B 85.430 803 76 20 2068 2848 65541932 65541149 0.000000e+00 797
18 TraesCS4A01G243800 chr4B 87.276 558 48 14 2068 2613 64807595 64807049 1.650000e-172 616
19 TraesCS4A01G243800 chr4B 91.362 301 15 7 544 843 64825464 64825174 5.030000e-108 401
20 TraesCS4A01G243800 chr4B 91.060 302 15 8 544 843 65113720 65113429 6.500000e-107 398
21 TraesCS4A01G243800 chr4B 91.060 302 15 8 544 843 65540992 65540701 6.500000e-107 398
22 TraesCS4A01G243800 chr4B 91.030 301 16 7 544 843 65163005 65162715 2.340000e-106 396
23 TraesCS4A01G243800 chr4B 83.146 445 31 23 2068 2471 65093643 65093202 1.830000e-97 366
24 TraesCS4A01G243800 chr4B 83.146 445 31 23 2068 2471 65522251 65521810 1.830000e-97 366
25 TraesCS4A01G243800 chr4B 89.683 252 19 3 544 795 64806567 64806323 6.740000e-82 315
26 TraesCS4A01G243800 chr4B 79.310 377 31 23 2136 2472 65597862 65597493 1.510000e-53 220
27 TraesCS4A01G243800 chr4B 85.890 163 16 4 2518 2673 65619542 65619380 2.000000e-37 167
28 TraesCS4A01G243800 chr4B 96.104 77 3 0 2068 2144 65598098 65598022 3.390000e-25 126
29 TraesCS4A01G243800 chr4D 91.632 1219 71 16 877 2069 44986457 44985244 0.000000e+00 1657
30 TraesCS4A01G243800 chr4D 84.375 704 62 20 2178 2849 44985072 44984385 0.000000e+00 647
31 TraesCS4A01G243800 chr4D 87.667 300 23 5 544 843 44984202 44983917 1.440000e-88 337
32 TraesCS4A01G243800 chrUn 90.051 392 29 4 911 1293 416652374 416651984 1.730000e-137 499
33 TraesCS4A01G243800 chrUn 91.060 302 15 8 544 843 309938375 309938084 6.500000e-107 398
34 TraesCS4A01G243800 chr2B 90.437 366 32 3 1 365 636002306 636002669 2.260000e-131 479
35 TraesCS4A01G243800 chr2B 91.803 183 14 1 366 548 636002701 636002882 1.490000e-63 254
36 TraesCS4A01G243800 chr2B 79.023 348 49 17 29 364 476404617 476404952 1.950000e-52 217
37 TraesCS4A01G243800 chr2B 89.344 122 13 0 366 487 476404985 476405106 1.550000e-33 154
38 TraesCS4A01G243800 chr2A 79.354 557 74 19 29 547 659158241 659157688 1.430000e-93 353
39 TraesCS4A01G243800 chr7A 95.775 213 9 0 3023 3235 90233586 90233798 8.590000e-91 344
40 TraesCS4A01G243800 chr7A 94.836 213 11 0 3023 3235 178317659 178317871 1.860000e-87 333
41 TraesCS4A01G243800 chr7A 94.787 211 11 0 3025 3235 357032405 357032195 2.410000e-86 329
42 TraesCS4A01G243800 chr1A 95.261 211 10 0 3025 3235 243544050 243544260 5.170000e-88 335
43 TraesCS4A01G243800 chr1A 93.897 213 13 0 3023 3235 502955372 502955160 4.030000e-84 322
44 TraesCS4A01G243800 chr6A 94.860 214 10 1 3022 3235 550345301 550345089 1.860000e-87 333
45 TraesCS4A01G243800 chr6A 93.243 222 15 0 3014 3235 485173329 485173550 8.650000e-86 327
46 TraesCS4A01G243800 chr5A 94.811 212 9 2 3025 3235 662141258 662141468 2.410000e-86 329
47 TraesCS4A01G243800 chr6B 81.818 121 18 3 2864 2981 155553742 155553623 7.390000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G243800 chr4A 554557280 554560514 3234 False 5975.000000 5975 100.000000 1 3235 1 chr4A.!!$F2 3234
1 TraesCS4A01G243800 chr4A 554542522 554544527 2005 False 1395.000000 1947 92.927000 877 2849 2 chr4A.!!$F4 1972
2 TraesCS4A01G243800 chr4A 554622514 554623296 782 False 1158.000000 1158 93.401000 34 817 1 chr4A.!!$F3 783
3 TraesCS4A01G243800 chr4A 554629559 554632180 2621 False 995.333333 1919 89.839333 544 2849 3 chr4A.!!$F5 2305
4 TraesCS4A01G243800 chr4B 65644027 65645198 1171 True 1644.000000 1644 92.105000 877 2042 1 chr4B.!!$R4 1165
5 TraesCS4A01G243800 chr4B 65162715 65165200 2485 True 968.333333 1707 89.721000 544 2857 3 chr4B.!!$R8 2313
6 TraesCS4A01G243800 chr4B 65540701 65543217 2516 True 955.666667 1672 89.461333 544 2848 3 chr4B.!!$R9 2304
7 TraesCS4A01G243800 chr4B 65113429 65115911 2482 True 944.333333 1637 89.520667 544 2848 3 chr4B.!!$R7 2304
8 TraesCS4A01G243800 chr4B 64825174 64827630 2456 True 935.666667 1598 89.920667 544 2857 3 chr4B.!!$R6 2313
9 TraesCS4A01G243800 chr4B 64806323 64808849 2526 True 848.000000 1613 89.753333 544 2613 3 chr4B.!!$R5 2069
10 TraesCS4A01G243800 chr4D 44983917 44986457 2540 True 880.333333 1657 87.891333 544 2849 3 chr4D.!!$R1 2305
11 TraesCS4A01G243800 chr2B 636002306 636002882 576 False 366.500000 479 91.120000 1 548 2 chr2B.!!$F2 547
12 TraesCS4A01G243800 chr2A 659157688 659158241 553 True 353.000000 353 79.354000 29 547 1 chr2A.!!$R1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 57 0.031585 CTCCGACGACAACAGGTTCA 59.968 55.0 0.00 0.0 0.00 3.18 F
466 515 0.110688 CACGTGTCGCATTTCTGGTG 60.111 55.0 7.58 0.0 0.00 4.17 F
485 534 0.174162 GGTTGCTTCATCACATGGGC 59.826 55.0 0.00 0.0 0.00 5.36 F
489 538 0.174162 GCTTCATCACATGGGCCAAC 59.826 55.0 11.89 0.0 0.00 3.77 F
2047 2129 0.108804 TCGTGCAAGGAAGACCGATC 60.109 55.0 0.00 0.0 41.83 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1901 1983 1.376424 CAGCCGCATGAAGACCTGT 60.376 57.895 0.00 0.00 0.0 4.00 R
2043 2125 1.934589 TACCATGGACGCAAAGATCG 58.065 50.000 21.47 0.00 0.0 3.69 R
2047 2129 2.811431 TCAAGTTACCATGGACGCAAAG 59.189 45.455 21.47 2.55 0.0 2.77 R
2066 2155 3.192844 CCGCTGGTTTAGTACTCTCTTCA 59.807 47.826 0.00 0.00 0.0 3.02 R
3054 3519 0.034059 CGCACAGTTCAGAACCCTCT 59.966 55.000 9.85 0.00 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.452474 TGGTCGTTTCCAGCAATTTTTG 58.548 40.909 0.00 0.00 33.19 2.44
56 57 0.031585 CTCCGACGACAACAGGTTCA 59.968 55.000 0.00 0.00 0.00 3.18
94 95 5.335583 CGGGTTTGCAATTCTGTTGATTCTA 60.336 40.000 0.00 0.00 0.00 2.10
129 130 0.681175 GTGGCAGGTTCCAGCATTTT 59.319 50.000 8.38 0.00 36.67 1.82
134 135 1.200020 CAGGTTCCAGCATTTTCGACC 59.800 52.381 0.00 0.00 0.00 4.79
402 451 2.650322 AGAGTTCCTTTGCGTGGAAAA 58.350 42.857 6.48 0.00 44.14 2.29
413 462 2.223479 TGCGTGGAAAAAGAAGAAGTGC 60.223 45.455 0.00 0.00 0.00 4.40
434 483 1.165907 TGCGGGTGTTCAGAGCAAAG 61.166 55.000 0.00 0.00 34.66 2.77
443 492 3.282885 GTTCAGAGCAAAGGGATAAGGG 58.717 50.000 0.00 0.00 0.00 3.95
444 493 2.845659 TCAGAGCAAAGGGATAAGGGA 58.154 47.619 0.00 0.00 0.00 4.20
445 494 2.774234 TCAGAGCAAAGGGATAAGGGAG 59.226 50.000 0.00 0.00 0.00 4.30
446 495 2.774234 CAGAGCAAAGGGATAAGGGAGA 59.226 50.000 0.00 0.00 0.00 3.71
447 496 2.774809 AGAGCAAAGGGATAAGGGAGAC 59.225 50.000 0.00 0.00 0.00 3.36
448 497 2.505819 GAGCAAAGGGATAAGGGAGACA 59.494 50.000 0.00 0.00 0.00 3.41
449 498 2.239907 AGCAAAGGGATAAGGGAGACAC 59.760 50.000 0.00 0.00 0.00 3.67
450 499 2.906354 CAAAGGGATAAGGGAGACACG 58.094 52.381 0.00 0.00 0.00 4.49
451 500 2.236395 CAAAGGGATAAGGGAGACACGT 59.764 50.000 0.00 0.00 0.00 4.49
452 501 1.486211 AGGGATAAGGGAGACACGTG 58.514 55.000 15.48 15.48 0.00 4.49
453 502 1.192428 GGGATAAGGGAGACACGTGT 58.808 55.000 23.64 23.64 0.00 4.49
454 503 1.136500 GGGATAAGGGAGACACGTGTC 59.864 57.143 35.83 35.83 45.08 3.67
463 512 3.639222 GACACGTGTCGCATTTCTG 57.361 52.632 31.03 0.00 35.12 3.02
464 513 0.163788 GACACGTGTCGCATTTCTGG 59.836 55.000 31.03 0.00 35.12 3.86
465 514 0.531974 ACACGTGTCGCATTTCTGGT 60.532 50.000 17.22 0.00 0.00 4.00
466 515 0.110688 CACGTGTCGCATTTCTGGTG 60.111 55.000 7.58 0.00 0.00 4.17
467 516 1.227999 ACGTGTCGCATTTCTGGTGG 61.228 55.000 0.00 0.00 0.00 4.61
468 517 1.227999 CGTGTCGCATTTCTGGTGGT 61.228 55.000 0.00 0.00 0.00 4.16
469 518 0.951558 GTGTCGCATTTCTGGTGGTT 59.048 50.000 0.00 0.00 0.00 3.67
470 519 0.950836 TGTCGCATTTCTGGTGGTTG 59.049 50.000 0.00 0.00 0.00 3.77
471 520 0.387239 GTCGCATTTCTGGTGGTTGC 60.387 55.000 0.00 0.00 0.00 4.17
472 521 0.537143 TCGCATTTCTGGTGGTTGCT 60.537 50.000 0.00 0.00 0.00 3.91
473 522 0.314935 CGCATTTCTGGTGGTTGCTT 59.685 50.000 0.00 0.00 0.00 3.91
474 523 1.666888 CGCATTTCTGGTGGTTGCTTC 60.667 52.381 0.00 0.00 0.00 3.86
475 524 1.340889 GCATTTCTGGTGGTTGCTTCA 59.659 47.619 0.00 0.00 0.00 3.02
476 525 2.028748 GCATTTCTGGTGGTTGCTTCAT 60.029 45.455 0.00 0.00 0.00 2.57
477 526 3.841643 CATTTCTGGTGGTTGCTTCATC 58.158 45.455 0.00 0.00 0.00 2.92
478 527 2.655090 TTCTGGTGGTTGCTTCATCA 57.345 45.000 0.00 0.00 0.00 3.07
479 528 1.896220 TCTGGTGGTTGCTTCATCAC 58.104 50.000 0.00 0.00 0.00 3.06
480 529 1.142667 TCTGGTGGTTGCTTCATCACA 59.857 47.619 0.00 0.00 32.29 3.58
481 530 2.165167 CTGGTGGTTGCTTCATCACAT 58.835 47.619 0.00 0.00 32.29 3.21
482 531 1.887854 TGGTGGTTGCTTCATCACATG 59.112 47.619 0.00 0.00 32.29 3.21
483 532 1.203052 GGTGGTTGCTTCATCACATGG 59.797 52.381 0.00 0.00 32.29 3.66
484 533 1.203052 GTGGTTGCTTCATCACATGGG 59.797 52.381 0.00 0.00 0.00 4.00
485 534 0.174162 GGTTGCTTCATCACATGGGC 59.826 55.000 0.00 0.00 0.00 5.36
486 535 0.174162 GTTGCTTCATCACATGGGCC 59.826 55.000 0.00 0.00 0.00 5.80
487 536 0.251698 TTGCTTCATCACATGGGCCA 60.252 50.000 9.61 9.61 0.00 5.36
488 537 0.251698 TGCTTCATCACATGGGCCAA 60.252 50.000 11.89 0.00 0.00 4.52
489 538 0.174162 GCTTCATCACATGGGCCAAC 59.826 55.000 11.89 0.00 0.00 3.77
490 539 0.452987 CTTCATCACATGGGCCAACG 59.547 55.000 11.89 7.68 0.00 4.10
491 540 0.251121 TTCATCACATGGGCCAACGT 60.251 50.000 11.89 8.47 0.00 3.99
492 541 0.959867 TCATCACATGGGCCAACGTG 60.960 55.000 25.69 25.69 0.00 4.49
493 542 2.342650 ATCACATGGGCCAACGTGC 61.343 57.895 26.42 0.00 0.00 5.34
494 543 4.403137 CACATGGGCCAACGTGCG 62.403 66.667 21.95 3.16 0.00 5.34
514 563 4.400961 AGGCTGCCGGCTGAAGAC 62.401 66.667 34.52 23.12 45.42 3.01
515 564 4.400961 GGCTGCCGGCTGAAGACT 62.401 66.667 34.52 0.00 41.46 3.24
516 565 2.817396 GCTGCCGGCTGAAGACTC 60.817 66.667 34.52 13.50 38.06 3.36
517 566 2.507992 CTGCCGGCTGAAGACTCG 60.508 66.667 29.70 0.57 0.00 4.18
518 567 4.742201 TGCCGGCTGAAGACTCGC 62.742 66.667 29.70 0.00 0.00 5.03
519 568 4.443266 GCCGGCTGAAGACTCGCT 62.443 66.667 22.15 0.00 0.00 4.93
520 569 2.202676 CCGGCTGAAGACTCGCTC 60.203 66.667 0.00 0.00 0.00 5.03
521 570 2.578178 CGGCTGAAGACTCGCTCG 60.578 66.667 0.00 0.00 0.00 5.03
522 571 2.569134 GGCTGAAGACTCGCTCGT 59.431 61.111 0.00 0.00 0.00 4.18
523 572 1.080434 GGCTGAAGACTCGCTCGTT 60.080 57.895 0.00 0.00 0.00 3.85
524 573 1.347817 GGCTGAAGACTCGCTCGTTG 61.348 60.000 0.00 0.00 0.00 4.10
525 574 0.664767 GCTGAAGACTCGCTCGTTGT 60.665 55.000 0.00 0.00 0.00 3.32
526 575 1.056103 CTGAAGACTCGCTCGTTGTG 58.944 55.000 0.00 0.00 0.00 3.33
527 576 0.939577 TGAAGACTCGCTCGTTGTGC 60.940 55.000 0.00 0.00 0.00 4.57
528 577 1.618640 GAAGACTCGCTCGTTGTGCC 61.619 60.000 0.00 0.00 0.00 5.01
529 578 3.470567 GACTCGCTCGTTGTGCCG 61.471 66.667 0.00 0.00 0.00 5.69
532 581 4.595538 TCGCTCGTTGTGCCGGTT 62.596 61.111 1.90 0.00 0.00 4.44
533 582 3.645975 CGCTCGTTGTGCCGGTTT 61.646 61.111 1.90 0.00 0.00 3.27
534 583 2.719354 GCTCGTTGTGCCGGTTTT 59.281 55.556 1.90 0.00 0.00 2.43
535 584 1.833434 CGCTCGTTGTGCCGGTTTTA 61.833 55.000 1.90 0.00 0.00 1.52
536 585 0.308376 GCTCGTTGTGCCGGTTTTAA 59.692 50.000 1.90 0.00 0.00 1.52
537 586 1.268640 GCTCGTTGTGCCGGTTTTAAA 60.269 47.619 1.90 0.00 0.00 1.52
538 587 2.377880 CTCGTTGTGCCGGTTTTAAAC 58.622 47.619 1.90 0.00 0.00 2.01
539 588 1.114047 CGTTGTGCCGGTTTTAAACG 58.886 50.000 1.90 9.30 35.10 3.60
540 589 1.531470 CGTTGTGCCGGTTTTAAACGT 60.531 47.619 1.90 0.00 36.54 3.99
541 590 2.528125 GTTGTGCCGGTTTTAAACGTT 58.472 42.857 1.90 0.00 0.00 3.99
542 591 2.922387 GTTGTGCCGGTTTTAAACGTTT 59.078 40.909 18.90 18.90 0.00 3.60
543 592 3.227810 TGTGCCGGTTTTAAACGTTTT 57.772 38.095 20.19 3.53 0.00 2.43
544 593 3.177487 TGTGCCGGTTTTAAACGTTTTC 58.823 40.909 20.19 7.62 0.00 2.29
545 594 2.535166 GTGCCGGTTTTAAACGTTTTCC 59.465 45.455 20.19 14.69 0.00 3.13
546 595 2.426381 TGCCGGTTTTAAACGTTTTCCT 59.574 40.909 20.19 0.00 0.00 3.36
547 596 3.629398 TGCCGGTTTTAAACGTTTTCCTA 59.371 39.130 20.19 0.00 0.00 2.94
548 597 4.096984 TGCCGGTTTTAAACGTTTTCCTAA 59.903 37.500 20.19 4.23 0.00 2.69
549 598 5.039984 GCCGGTTTTAAACGTTTTCCTAAA 58.960 37.500 20.19 10.56 0.00 1.85
550 599 5.518128 GCCGGTTTTAAACGTTTTCCTAAAA 59.482 36.000 20.19 15.81 0.00 1.52
551 600 6.200665 GCCGGTTTTAAACGTTTTCCTAAAAT 59.799 34.615 20.19 0.00 32.22 1.82
552 601 7.380870 GCCGGTTTTAAACGTTTTCCTAAAATA 59.619 33.333 20.19 0.00 32.22 1.40
553 602 9.409312 CCGGTTTTAAACGTTTTCCTAAAATAT 57.591 29.630 20.19 0.00 32.22 1.28
588 637 8.986477 AATTCAAAATCCATAAAGAGAAACGG 57.014 30.769 0.00 0.00 0.00 4.44
589 638 7.753309 TTCAAAATCCATAAAGAGAAACGGA 57.247 32.000 0.00 0.00 0.00 4.69
590 639 7.753309 TCAAAATCCATAAAGAGAAACGGAA 57.247 32.000 0.00 0.00 0.00 4.30
591 640 8.172352 TCAAAATCCATAAAGAGAAACGGAAA 57.828 30.769 0.00 0.00 0.00 3.13
592 641 8.296713 TCAAAATCCATAAAGAGAAACGGAAAG 58.703 33.333 0.00 0.00 0.00 2.62
593 642 7.996098 AAATCCATAAAGAGAAACGGAAAGA 57.004 32.000 0.00 0.00 0.00 2.52
594 643 6.986904 ATCCATAAAGAGAAACGGAAAGAC 57.013 37.500 0.00 0.00 0.00 3.01
595 644 5.860611 TCCATAAAGAGAAACGGAAAGACA 58.139 37.500 0.00 0.00 0.00 3.41
596 645 6.292923 TCCATAAAGAGAAACGGAAAGACAA 58.707 36.000 0.00 0.00 0.00 3.18
597 646 6.768861 TCCATAAAGAGAAACGGAAAGACAAA 59.231 34.615 0.00 0.00 0.00 2.83
598 647 7.447238 TCCATAAAGAGAAACGGAAAGACAAAT 59.553 33.333 0.00 0.00 0.00 2.32
599 648 7.750903 CCATAAAGAGAAACGGAAAGACAAATC 59.249 37.037 0.00 0.00 0.00 2.17
600 649 5.690997 AAGAGAAACGGAAAGACAAATCC 57.309 39.130 0.00 0.00 0.00 3.01
606 655 2.566952 GGAAAGACAAATCCGGCATG 57.433 50.000 0.00 0.00 0.00 4.06
607 656 1.134946 GGAAAGACAAATCCGGCATGG 59.865 52.381 0.00 0.00 40.09 3.66
608 657 1.818674 GAAAGACAAATCCGGCATGGT 59.181 47.619 0.00 0.00 39.52 3.55
609 658 2.799126 AAGACAAATCCGGCATGGTA 57.201 45.000 0.00 0.00 39.52 3.25
610 659 3.297134 AAGACAAATCCGGCATGGTAT 57.703 42.857 0.00 0.00 39.52 2.73
611 660 3.297134 AGACAAATCCGGCATGGTATT 57.703 42.857 0.00 0.00 39.52 1.89
612 661 2.951642 AGACAAATCCGGCATGGTATTG 59.048 45.455 0.00 10.72 39.05 1.90
613 662 2.031120 ACAAATCCGGCATGGTATTGG 58.969 47.619 0.00 0.00 38.13 3.16
614 663 2.031120 CAAATCCGGCATGGTATTGGT 58.969 47.619 0.00 0.00 39.52 3.67
615 664 2.430332 CAAATCCGGCATGGTATTGGTT 59.570 45.455 0.00 0.00 39.52 3.67
616 665 3.586470 AATCCGGCATGGTATTGGTTA 57.414 42.857 0.00 0.00 39.52 2.85
617 666 2.631160 TCCGGCATGGTATTGGTTAG 57.369 50.000 0.00 0.00 39.52 2.34
618 667 1.841277 TCCGGCATGGTATTGGTTAGT 59.159 47.619 0.00 0.00 39.52 2.24
619 668 1.946768 CCGGCATGGTATTGGTTAGTG 59.053 52.381 0.00 0.00 0.00 2.74
620 669 2.639065 CGGCATGGTATTGGTTAGTGT 58.361 47.619 0.00 0.00 0.00 3.55
621 670 2.612212 CGGCATGGTATTGGTTAGTGTC 59.388 50.000 0.00 0.00 0.00 3.67
622 671 3.681594 CGGCATGGTATTGGTTAGTGTCT 60.682 47.826 0.00 0.00 0.00 3.41
623 672 3.627577 GGCATGGTATTGGTTAGTGTCTG 59.372 47.826 0.00 0.00 0.00 3.51
624 673 4.513442 GCATGGTATTGGTTAGTGTCTGA 58.487 43.478 0.00 0.00 0.00 3.27
625 674 4.572389 GCATGGTATTGGTTAGTGTCTGAG 59.428 45.833 0.00 0.00 0.00 3.35
626 675 5.734720 CATGGTATTGGTTAGTGTCTGAGT 58.265 41.667 0.00 0.00 0.00 3.41
627 676 5.818678 TGGTATTGGTTAGTGTCTGAGTT 57.181 39.130 0.00 0.00 0.00 3.01
628 677 6.182507 TGGTATTGGTTAGTGTCTGAGTTT 57.817 37.500 0.00 0.00 0.00 2.66
629 678 6.597562 TGGTATTGGTTAGTGTCTGAGTTTT 58.402 36.000 0.00 0.00 0.00 2.43
630 679 7.057894 TGGTATTGGTTAGTGTCTGAGTTTTT 58.942 34.615 0.00 0.00 0.00 1.94
631 680 8.212312 TGGTATTGGTTAGTGTCTGAGTTTTTA 58.788 33.333 0.00 0.00 0.00 1.52
632 681 9.227777 GGTATTGGTTAGTGTCTGAGTTTTTAT 57.772 33.333 0.00 0.00 0.00 1.40
637 686 9.796120 TGGTTAGTGTCTGAGTTTTTATTTTTG 57.204 29.630 0.00 0.00 0.00 2.44
638 687 9.797556 GGTTAGTGTCTGAGTTTTTATTTTTGT 57.202 29.630 0.00 0.00 0.00 2.83
641 690 8.293699 AGTGTCTGAGTTTTTATTTTTGTCCT 57.706 30.769 0.00 0.00 0.00 3.85
642 691 8.749354 AGTGTCTGAGTTTTTATTTTTGTCCTT 58.251 29.630 0.00 0.00 0.00 3.36
643 692 9.366216 GTGTCTGAGTTTTTATTTTTGTCCTTT 57.634 29.630 0.00 0.00 0.00 3.11
644 693 9.581099 TGTCTGAGTTTTTATTTTTGTCCTTTC 57.419 29.630 0.00 0.00 0.00 2.62
645 694 9.803315 GTCTGAGTTTTTATTTTTGTCCTTTCT 57.197 29.630 0.00 0.00 0.00 2.52
646 695 9.801873 TCTGAGTTTTTATTTTTGTCCTTTCTG 57.198 29.630 0.00 0.00 0.00 3.02
647 696 9.586435 CTGAGTTTTTATTTTTGTCCTTTCTGT 57.414 29.630 0.00 0.00 0.00 3.41
658 707 9.883142 TTTTTGTCCTTTCTGTATTTCAAATGT 57.117 25.926 0.00 0.00 0.00 2.71
659 708 9.883142 TTTTGTCCTTTCTGTATTTCAAATGTT 57.117 25.926 0.00 0.00 0.00 2.71
660 709 8.870160 TTGTCCTTTCTGTATTTCAAATGTTG 57.130 30.769 0.00 0.00 0.00 3.33
661 710 7.432869 TGTCCTTTCTGTATTTCAAATGTTGG 58.567 34.615 0.00 0.00 0.00 3.77
662 711 7.286546 TGTCCTTTCTGTATTTCAAATGTTGGA 59.713 33.333 0.00 0.00 0.00 3.53
663 712 8.306761 GTCCTTTCTGTATTTCAAATGTTGGAT 58.693 33.333 0.00 0.00 0.00 3.41
664 713 8.869109 TCCTTTCTGTATTTCAAATGTTGGATT 58.131 29.630 0.00 0.00 0.00 3.01
665 714 9.492973 CCTTTCTGTATTTCAAATGTTGGATTT 57.507 29.630 0.00 0.00 0.00 2.17
670 719 9.787532 CTGTATTTCAAATGTTGGATTTATCGT 57.212 29.630 0.00 0.00 0.00 3.73
676 725 8.879342 TCAAATGTTGGATTTATCGTTTTTGT 57.121 26.923 0.00 0.00 0.00 2.83
677 726 9.967346 TCAAATGTTGGATTTATCGTTTTTGTA 57.033 25.926 0.00 0.00 0.00 2.41
682 731 9.226606 TGTTGGATTTATCGTTTTTGTATCTCT 57.773 29.630 0.00 0.00 0.00 3.10
694 743 9.250986 CGTTTTTGTATCTCTTTCTGTATTTCG 57.749 33.333 0.00 0.00 0.00 3.46
709 758 9.825972 TTCTGTATTTCGAATTTTGATCTGAAC 57.174 29.630 0.00 0.00 0.00 3.18
710 759 9.219603 TCTGTATTTCGAATTTTGATCTGAACT 57.780 29.630 0.00 0.00 0.00 3.01
711 760 9.831737 CTGTATTTCGAATTTTGATCTGAACTT 57.168 29.630 0.00 0.00 0.00 2.66
731 780 9.787435 TGAACTTTTTATAGGTTGTAGACATGT 57.213 29.630 0.00 0.00 0.00 3.21
736 785 9.787435 TTTTTATAGGTTGTAGACATGTCTTGT 57.213 29.630 32.14 14.46 42.79 3.16
740 789 8.773404 ATAGGTTGTAGACATGTCTTGTAAAC 57.227 34.615 32.14 25.78 39.18 2.01
741 790 6.588204 AGGTTGTAGACATGTCTTGTAAACA 58.412 36.000 32.14 25.17 39.18 2.83
742 791 7.224297 AGGTTGTAGACATGTCTTGTAAACAT 58.776 34.615 32.14 22.83 39.18 2.71
743 792 7.387948 AGGTTGTAGACATGTCTTGTAAACATC 59.612 37.037 32.14 24.44 39.18 3.06
744 793 7.360946 GGTTGTAGACATGTCTTGTAAACATCC 60.361 40.741 32.14 28.13 39.18 3.51
745 794 6.764379 TGTAGACATGTCTTGTAAACATCCA 58.236 36.000 32.14 8.03 39.18 3.41
746 795 6.649141 TGTAGACATGTCTTGTAAACATCCAC 59.351 38.462 32.14 19.21 39.18 4.02
747 796 5.620206 AGACATGTCTTGTAAACATCCACA 58.380 37.500 22.89 0.00 39.18 4.17
748 797 5.470098 AGACATGTCTTGTAAACATCCACAC 59.530 40.000 22.89 0.00 39.18 3.82
749 798 5.129634 ACATGTCTTGTAAACATCCACACA 58.870 37.500 0.00 0.00 36.57 3.72
750 799 5.592282 ACATGTCTTGTAAACATCCACACAA 59.408 36.000 0.00 0.00 36.57 3.33
751 800 6.096141 ACATGTCTTGTAAACATCCACACAAA 59.904 34.615 0.00 0.00 36.57 2.83
752 801 6.516739 TGTCTTGTAAACATCCACACAAAA 57.483 33.333 0.00 0.00 31.00 2.44
753 802 6.925211 TGTCTTGTAAACATCCACACAAAAA 58.075 32.000 0.00 0.00 31.00 1.94
777 826 9.956720 AAAATCAGATCTTTTTGACACACTTAG 57.043 29.630 4.65 0.00 0.00 2.18
778 827 8.908786 AATCAGATCTTTTTGACACACTTAGA 57.091 30.769 0.00 0.00 0.00 2.10
779 828 9.512588 AATCAGATCTTTTTGACACACTTAGAT 57.487 29.630 0.00 0.00 0.00 1.98
780 829 8.908786 TCAGATCTTTTTGACACACTTAGATT 57.091 30.769 0.00 0.00 0.00 2.40
781 830 9.342308 TCAGATCTTTTTGACACACTTAGATTT 57.658 29.630 0.00 0.00 0.00 2.17
782 831 9.956720 CAGATCTTTTTGACACACTTAGATTTT 57.043 29.630 0.00 0.00 0.00 1.82
820 869 3.325870 TCAAAGTCGGAGCATGTTAGTG 58.674 45.455 0.00 0.00 0.00 2.74
872 921 2.576648 AGTTCTTATGACCCACTTCCCC 59.423 50.000 0.00 0.00 0.00 4.81
966 1023 0.249911 ACCGCAATATCCTTCCTCGC 60.250 55.000 0.00 0.00 0.00 5.03
1001 1059 0.787084 ACTCCACTCCCTCTCCTTCA 59.213 55.000 0.00 0.00 0.00 3.02
2043 2125 0.603975 AAGCTCGTGCAAGGAAGACC 60.604 55.000 12.58 0.00 42.74 3.85
2047 2129 0.108804 TCGTGCAAGGAAGACCGATC 60.109 55.000 0.00 0.00 41.83 3.69
2066 2155 3.134574 TCTTTGCGTCCATGGTAACTT 57.865 42.857 12.58 0.00 37.61 2.66
2213 2505 6.567769 TGAAAATTTTCGTTTCAGTGAAGC 57.432 33.333 22.51 9.50 39.46 3.86
2318 2660 1.714794 CACTTCGTGGATCTGACACC 58.285 55.000 0.00 0.00 35.46 4.16
2319 2661 1.000843 CACTTCGTGGATCTGACACCA 59.999 52.381 0.00 1.99 35.46 4.17
2320 2662 1.691976 ACTTCGTGGATCTGACACCAA 59.308 47.619 6.93 0.00 37.94 3.67
2648 3104 6.312918 ACTGTTATGCAATTTTCTCGTCGTAT 59.687 34.615 0.00 0.00 0.00 3.06
2652 3108 8.846607 GTTATGCAATTTTCTCGTCGTATTTTT 58.153 29.630 0.00 0.00 0.00 1.94
2693 3156 3.195661 CCAGGTAGCCGAATCAAGTTAC 58.804 50.000 0.00 0.00 0.00 2.50
2694 3157 3.118738 CCAGGTAGCCGAATCAAGTTACT 60.119 47.826 0.00 0.00 0.00 2.24
2743 3208 2.046892 CACGCTAGCTGCACCCTT 60.047 61.111 13.93 0.00 43.06 3.95
2744 3209 2.103042 CACGCTAGCTGCACCCTTC 61.103 63.158 13.93 0.00 43.06 3.46
2745 3210 2.286523 ACGCTAGCTGCACCCTTCT 61.287 57.895 13.93 0.00 43.06 2.85
2746 3211 0.970937 ACGCTAGCTGCACCCTTCTA 60.971 55.000 13.93 0.00 43.06 2.10
2747 3212 0.528684 CGCTAGCTGCACCCTTCTAC 60.529 60.000 13.93 0.00 43.06 2.59
2748 3213 0.827368 GCTAGCTGCACCCTTCTACT 59.173 55.000 7.70 0.00 42.31 2.57
2749 3214 1.472376 GCTAGCTGCACCCTTCTACTG 60.472 57.143 7.70 0.00 42.31 2.74
2750 3215 1.827969 CTAGCTGCACCCTTCTACTGT 59.172 52.381 1.02 0.00 0.00 3.55
2757 3222 3.838317 TGCACCCTTCTACTGTTCTACAT 59.162 43.478 0.00 0.00 0.00 2.29
2775 3240 8.447053 GTTCTACATGAGAGAGGAAAATGAAAC 58.553 37.037 0.00 0.00 34.93 2.78
2798 3263 6.349300 ACATCATTGCTAATTACTTCCTCGT 58.651 36.000 0.00 0.00 0.00 4.18
2818 3283 7.041644 TCCTCGTTTCTCAATTAATCAACGTTT 60.042 33.333 0.00 0.00 38.47 3.60
2849 3314 1.003545 CTCAATTAACCGAGGCATGCG 60.004 52.381 12.44 0.00 0.00 4.73
2851 3316 1.029408 AATTAACCGAGGCATGCGCA 61.029 50.000 14.96 14.96 41.24 6.09
2852 3317 1.714899 ATTAACCGAGGCATGCGCAC 61.715 55.000 14.90 0.00 41.24 5.34
2853 3318 3.597675 TAACCGAGGCATGCGCACA 62.598 57.895 14.90 0.00 41.24 4.57
2856 3321 3.120385 CGAGGCATGCGCACAAGA 61.120 61.111 14.90 0.00 41.24 3.02
2857 3322 2.466982 CGAGGCATGCGCACAAGAT 61.467 57.895 14.90 0.00 41.24 2.40
2858 3323 1.354506 GAGGCATGCGCACAAGATC 59.645 57.895 14.90 3.69 41.24 2.75
2859 3324 2.056481 GAGGCATGCGCACAAGATCC 62.056 60.000 14.90 7.80 41.24 3.36
2860 3325 2.023741 GCATGCGCACAAGATCCG 59.976 61.111 14.90 0.00 38.36 4.18
2862 3327 1.349627 CATGCGCACAAGATCCGAC 59.650 57.895 14.90 0.00 0.00 4.79
2863 3328 1.815421 ATGCGCACAAGATCCGACC 60.815 57.895 14.90 0.00 0.00 4.79
2864 3329 3.554692 GCGCACAAGATCCGACCG 61.555 66.667 0.30 0.00 0.00 4.79
2865 3330 2.885644 CGCACAAGATCCGACCGG 60.886 66.667 0.00 0.00 0.00 5.28
2866 3331 3.195698 GCACAAGATCCGACCGGC 61.196 66.667 0.00 0.00 34.68 6.13
2867 3332 2.579201 CACAAGATCCGACCGGCT 59.421 61.111 0.00 0.00 34.68 5.52
2868 3333 1.811266 CACAAGATCCGACCGGCTG 60.811 63.158 0.00 0.00 34.68 4.85
2870 3335 4.162690 AAGATCCGACCGGCTGGC 62.163 66.667 12.89 3.44 39.70 4.85
2882 3347 4.120331 GCTGGCGGCGCTTGATTT 62.120 61.111 32.30 0.00 0.00 2.17
2883 3348 2.100991 CTGGCGGCGCTTGATTTC 59.899 61.111 32.30 13.58 0.00 2.17
2884 3349 3.723364 CTGGCGGCGCTTGATTTCG 62.723 63.158 32.30 0.56 0.00 3.46
2890 3355 2.020016 CGCTTGATTTCGCGGACG 59.980 61.111 6.13 0.00 45.17 4.79
2891 3356 2.399611 GCTTGATTTCGCGGACGG 59.600 61.111 6.13 0.00 40.63 4.79
2892 3357 2.399611 CTTGATTTCGCGGACGGC 59.600 61.111 6.13 0.00 40.63 5.68
2893 3358 2.047655 TTGATTTCGCGGACGGCT 60.048 55.556 6.13 0.00 40.44 5.52
2894 3359 2.296692 CTTGATTTCGCGGACGGCTG 62.297 60.000 6.13 0.00 40.44 4.85
2895 3360 3.564027 GATTTCGCGGACGGCTGG 61.564 66.667 6.13 0.00 40.44 4.85
2907 3372 3.885521 GGCTGGCAGCGCTTGATC 61.886 66.667 31.22 13.30 43.62 2.92
2908 3373 3.885521 GCTGGCAGCGCTTGATCC 61.886 66.667 25.47 7.55 0.00 3.36
2909 3374 3.570638 CTGGCAGCGCTTGATCCG 61.571 66.667 7.50 0.00 0.00 4.18
2910 3375 4.081185 TGGCAGCGCTTGATCCGA 62.081 61.111 7.50 0.00 0.00 4.55
2911 3376 3.267860 GGCAGCGCTTGATCCGAG 61.268 66.667 7.50 0.00 0.00 4.63
2912 3377 3.934684 GCAGCGCTTGATCCGAGC 61.935 66.667 7.50 0.55 37.51 5.03
2918 3383 4.207281 CTTGATCCGAGCGGCCGA 62.207 66.667 33.48 7.91 34.68 5.54
2919 3384 4.508128 TTGATCCGAGCGGCCGAC 62.508 66.667 33.48 20.78 34.68 4.79
2921 3386 4.508128 GATCCGAGCGGCCGACAA 62.508 66.667 33.48 12.87 34.68 3.18
2922 3387 4.814294 ATCCGAGCGGCCGACAAC 62.814 66.667 33.48 11.55 34.68 3.32
2929 3394 2.104331 CGGCCGACAACGCTAGAT 59.896 61.111 24.07 0.00 38.29 1.98
2930 3395 1.518572 CGGCCGACAACGCTAGATT 60.519 57.895 24.07 0.00 38.29 2.40
2931 3396 1.082117 CGGCCGACAACGCTAGATTT 61.082 55.000 24.07 0.00 38.29 2.17
2932 3397 1.084289 GGCCGACAACGCTAGATTTT 58.916 50.000 0.00 0.00 38.29 1.82
2933 3398 1.202031 GGCCGACAACGCTAGATTTTG 60.202 52.381 0.00 0.00 38.29 2.44
2934 3399 1.202031 GCCGACAACGCTAGATTTTGG 60.202 52.381 0.00 0.00 38.29 3.28
2935 3400 1.396996 CCGACAACGCTAGATTTTGGG 59.603 52.381 0.00 0.00 38.29 4.12
2936 3401 1.396996 CGACAACGCTAGATTTTGGGG 59.603 52.381 0.00 0.00 0.00 4.96
2937 3402 2.706890 GACAACGCTAGATTTTGGGGA 58.293 47.619 0.00 0.00 0.00 4.81
2938 3403 2.418976 GACAACGCTAGATTTTGGGGAC 59.581 50.000 0.00 0.00 0.00 4.46
2957 3422 3.747976 GCCGGTGGCGCTTGATTT 61.748 61.111 7.64 0.00 39.62 2.17
2958 3423 2.485122 CCGGTGGCGCTTGATTTC 59.515 61.111 7.64 0.00 0.00 2.17
2959 3424 2.098298 CGGTGGCGCTTGATTTCG 59.902 61.111 7.64 0.00 0.00 3.46
2960 3425 2.485122 GGTGGCGCTTGATTTCGG 59.515 61.111 7.64 0.00 0.00 4.30
2961 3426 2.485122 GTGGCGCTTGATTTCGGG 59.515 61.111 7.64 0.00 0.00 5.14
2963 3428 2.437716 GGCGCTTGATTTCGGGGA 60.438 61.111 7.64 0.00 0.00 4.81
2964 3429 1.823899 GGCGCTTGATTTCGGGGAT 60.824 57.895 7.64 0.00 0.00 3.85
2965 3430 1.356624 GCGCTTGATTTCGGGGATG 59.643 57.895 0.00 0.00 0.00 3.51
2966 3431 2.024918 CGCTTGATTTCGGGGATGG 58.975 57.895 0.00 0.00 0.00 3.51
2967 3432 1.735973 GCTTGATTTCGGGGATGGC 59.264 57.895 0.00 0.00 0.00 4.40
2968 3433 2.024918 CTTGATTTCGGGGATGGCG 58.975 57.895 0.00 0.00 0.00 5.69
2969 3434 1.447317 CTTGATTTCGGGGATGGCGG 61.447 60.000 0.00 0.00 0.00 6.13
2970 3435 2.594592 GATTTCGGGGATGGCGGG 60.595 66.667 0.00 0.00 0.00 6.13
2971 3436 4.894896 ATTTCGGGGATGGCGGGC 62.895 66.667 0.00 0.00 0.00 6.13
2977 3442 4.875713 GGGATGGCGGGCGATGTT 62.876 66.667 0.00 0.00 0.00 2.71
2979 3444 2.408835 GATGGCGGGCGATGTTTG 59.591 61.111 0.00 0.00 0.00 2.93
2981 3446 1.447317 GATGGCGGGCGATGTTTGAT 61.447 55.000 0.00 0.00 0.00 2.57
2982 3447 1.727511 ATGGCGGGCGATGTTTGATG 61.728 55.000 0.00 0.00 0.00 3.07
2983 3448 2.278142 GCGGGCGATGTTTGATGC 60.278 61.111 0.00 0.00 0.00 3.91
2985 3450 2.460275 CGGGCGATGTTTGATGCGA 61.460 57.895 0.00 0.00 0.00 5.10
2987 3452 1.369091 GGGCGATGTTTGATGCGAGT 61.369 55.000 0.00 0.00 0.00 4.18
2988 3453 0.247814 GGCGATGTTTGATGCGAGTG 60.248 55.000 0.00 0.00 0.00 3.51
2989 3454 0.247814 GCGATGTTTGATGCGAGTGG 60.248 55.000 0.00 0.00 0.00 4.00
2991 3456 0.099436 GATGTTTGATGCGAGTGGCC 59.901 55.000 0.00 0.00 42.61 5.36
2992 3457 1.647545 ATGTTTGATGCGAGTGGCCG 61.648 55.000 0.00 0.00 42.61 6.13
2995 3460 4.758251 TGATGCGAGTGGCCGTGG 62.758 66.667 0.00 0.00 42.61 4.94
3005 3470 3.747976 GGCCGTGGCGCTTGATTT 61.748 61.111 7.64 0.00 43.06 2.17
3006 3471 2.258286 GCCGTGGCGCTTGATTTT 59.742 55.556 7.64 0.00 0.00 1.82
3007 3472 1.372872 GCCGTGGCGCTTGATTTTT 60.373 52.632 7.64 0.00 0.00 1.94
3008 3473 1.344226 GCCGTGGCGCTTGATTTTTC 61.344 55.000 7.64 0.00 0.00 2.29
3010 3475 1.330306 CGTGGCGCTTGATTTTTCAG 58.670 50.000 7.64 0.00 0.00 3.02
3011 3476 1.701704 GTGGCGCTTGATTTTTCAGG 58.298 50.000 7.64 0.00 0.00 3.86
3012 3477 0.602562 TGGCGCTTGATTTTTCAGGG 59.397 50.000 7.64 0.00 0.00 4.45
3015 3480 2.533266 GCGCTTGATTTTTCAGGGATG 58.467 47.619 0.00 0.00 0.00 3.51
3016 3481 2.736400 GCGCTTGATTTTTCAGGGATGG 60.736 50.000 0.00 0.00 0.00 3.51
3017 3482 2.736400 CGCTTGATTTTTCAGGGATGGC 60.736 50.000 0.00 0.00 0.00 4.40
3018 3483 2.419159 GCTTGATTTTTCAGGGATGGCC 60.419 50.000 0.00 0.00 0.00 5.36
3019 3484 1.473258 TGATTTTTCAGGGATGGCCG 58.527 50.000 0.00 0.00 33.83 6.13
3021 3486 1.405463 GATTTTTCAGGGATGGCCGTC 59.595 52.381 17.28 17.28 33.83 4.79
3022 3487 0.958382 TTTTTCAGGGATGGCCGTCG 60.958 55.000 18.79 5.45 33.83 5.12
3023 3488 3.969250 TTTCAGGGATGGCCGTCGC 62.969 63.158 29.74 29.74 33.83 5.19
3028 3493 4.451150 GGATGGCCGTCGCTGTCA 62.451 66.667 18.79 0.00 34.44 3.58
3031 3496 3.939837 ATGGCCGTCGCTGTCAGTG 62.940 63.158 7.09 7.09 34.44 3.66
3032 3497 4.664677 GGCCGTCGCTGTCAGTGT 62.665 66.667 13.00 0.00 34.44 3.55
3033 3498 3.106407 GCCGTCGCTGTCAGTGTC 61.106 66.667 13.00 6.91 0.00 3.67
3038 3503 1.332028 CGTCGCTGTCAGTGTCAAAAC 60.332 52.381 13.00 3.09 0.00 2.43
3039 3504 1.003866 GTCGCTGTCAGTGTCAAAACC 60.004 52.381 13.00 0.00 0.00 3.27
3040 3505 0.042188 CGCTGTCAGTGTCAAAACCG 60.042 55.000 5.17 0.00 0.00 4.44
3041 3506 1.295792 GCTGTCAGTGTCAAAACCGA 58.704 50.000 0.93 0.00 0.00 4.69
3042 3507 1.003866 GCTGTCAGTGTCAAAACCGAC 60.004 52.381 0.93 0.00 36.40 4.79
3043 3508 1.257936 CTGTCAGTGTCAAAACCGACG 59.742 52.381 0.00 0.00 38.84 5.12
3044 3509 0.580104 GTCAGTGTCAAAACCGACGG 59.420 55.000 13.61 13.61 38.84 4.79
3047 3512 1.459592 CAGTGTCAAAACCGACGGATC 59.540 52.381 23.38 0.00 38.84 3.36
3048 3513 1.343465 AGTGTCAAAACCGACGGATCT 59.657 47.619 23.38 0.95 38.84 2.75
3049 3514 1.725164 GTGTCAAAACCGACGGATCTC 59.275 52.381 23.38 6.28 38.84 2.75
3050 3515 0.989890 GTCAAAACCGACGGATCTCG 59.010 55.000 23.38 4.82 45.88 4.04
3059 3524 0.890090 GACGGATCTCGGGTAGAGGG 60.890 65.000 8.20 0.00 46.82 4.30
3060 3525 1.150992 CGGATCTCGGGTAGAGGGT 59.849 63.158 0.00 0.00 46.82 4.34
3061 3526 0.467659 CGGATCTCGGGTAGAGGGTT 60.468 60.000 0.00 0.00 46.82 4.11
3062 3527 1.330234 GGATCTCGGGTAGAGGGTTC 58.670 60.000 0.00 0.00 46.82 3.62
3063 3528 1.133419 GGATCTCGGGTAGAGGGTTCT 60.133 57.143 0.00 0.00 46.82 3.01
3064 3529 1.957877 GATCTCGGGTAGAGGGTTCTG 59.042 57.143 0.00 0.00 46.82 3.02
3066 3531 1.356738 TCTCGGGTAGAGGGTTCTGAA 59.643 52.381 0.00 0.00 46.82 3.02
3067 3532 1.477295 CTCGGGTAGAGGGTTCTGAAC 59.523 57.143 12.05 12.05 43.20 3.18
3068 3533 1.076677 TCGGGTAGAGGGTTCTGAACT 59.923 52.381 19.05 1.23 34.79 3.01
3069 3534 1.204941 CGGGTAGAGGGTTCTGAACTG 59.795 57.143 19.05 0.00 34.79 3.16
3072 3537 2.613223 GGTAGAGGGTTCTGAACTGTGC 60.613 54.545 19.05 3.91 34.79 4.57
3073 3538 0.034059 AGAGGGTTCTGAACTGTGCG 59.966 55.000 19.05 0.00 30.72 5.34
3075 3540 0.180406 AGGGTTCTGAACTGTGCGTT 59.820 50.000 19.05 0.00 38.91 4.84
3078 3543 2.614983 GGGTTCTGAACTGTGCGTTTAA 59.385 45.455 19.05 0.00 35.56 1.52
3079 3544 3.303791 GGGTTCTGAACTGTGCGTTTAAG 60.304 47.826 19.05 0.00 35.56 1.85
3080 3545 3.303791 GGTTCTGAACTGTGCGTTTAAGG 60.304 47.826 19.05 0.00 35.56 2.69
3081 3546 3.188159 TCTGAACTGTGCGTTTAAGGT 57.812 42.857 0.00 0.00 35.56 3.50
3082 3547 3.537580 TCTGAACTGTGCGTTTAAGGTT 58.462 40.909 0.00 0.00 35.56 3.50
3083 3548 3.311322 TCTGAACTGTGCGTTTAAGGTTG 59.689 43.478 0.00 0.00 35.56 3.77
3085 3550 3.880490 TGAACTGTGCGTTTAAGGTTGAT 59.120 39.130 0.00 0.00 35.56 2.57
3086 3551 3.896648 ACTGTGCGTTTAAGGTTGATG 57.103 42.857 0.00 0.00 0.00 3.07
3087 3552 2.552315 ACTGTGCGTTTAAGGTTGATGG 59.448 45.455 0.00 0.00 0.00 3.51
3088 3553 2.552315 CTGTGCGTTTAAGGTTGATGGT 59.448 45.455 0.00 0.00 0.00 3.55
3091 3556 4.023878 TGTGCGTTTAAGGTTGATGGTAAC 60.024 41.667 0.00 0.00 0.00 2.50
3103 3568 3.082619 TGGTAACAGGAGACAGGGG 57.917 57.895 0.00 0.00 46.17 4.79
3105 3570 0.903236 GGTAACAGGAGACAGGGGAC 59.097 60.000 0.00 0.00 0.00 4.46
3106 3571 1.640917 GTAACAGGAGACAGGGGACA 58.359 55.000 0.00 0.00 0.00 4.02
3107 3572 1.275573 GTAACAGGAGACAGGGGACAC 59.724 57.143 0.00 0.00 0.00 3.67
3108 3573 1.472662 AACAGGAGACAGGGGACACG 61.473 60.000 0.00 0.00 0.00 4.49
3110 3575 0.972983 CAGGAGACAGGGGACACGAT 60.973 60.000 0.00 0.00 0.00 3.73
3111 3576 0.972983 AGGAGACAGGGGACACGATG 60.973 60.000 0.00 0.00 0.00 3.84
3112 3577 1.258445 GGAGACAGGGGACACGATGT 61.258 60.000 0.00 0.00 0.00 3.06
3114 3579 1.002087 GAGACAGGGGACACGATGTTT 59.998 52.381 0.00 0.00 0.00 2.83
3115 3580 1.420138 AGACAGGGGACACGATGTTTT 59.580 47.619 0.00 0.00 0.00 2.43
3117 3582 2.740447 GACAGGGGACACGATGTTTTAC 59.260 50.000 0.00 0.00 0.00 2.01
3118 3583 2.081462 CAGGGGACACGATGTTTTACC 58.919 52.381 0.00 0.00 0.00 2.85
3119 3584 1.003928 AGGGGACACGATGTTTTACCC 59.996 52.381 0.00 0.00 31.78 3.69
3122 3587 2.081462 GGACACGATGTTTTACCCAGG 58.919 52.381 0.00 0.00 0.00 4.45
3123 3588 2.551504 GGACACGATGTTTTACCCAGGT 60.552 50.000 0.00 0.00 0.00 4.00
3124 3589 3.143728 GACACGATGTTTTACCCAGGTT 58.856 45.455 0.00 0.00 0.00 3.50
3125 3590 3.143728 ACACGATGTTTTACCCAGGTTC 58.856 45.455 0.00 0.00 0.00 3.62
3126 3591 2.158841 CACGATGTTTTACCCAGGTTCG 59.841 50.000 0.00 0.00 0.00 3.95
3127 3592 1.735571 CGATGTTTTACCCAGGTTCGG 59.264 52.381 0.00 0.00 0.00 4.30
3135 3600 3.330720 CCAGGTTCGGGCCCTCTT 61.331 66.667 22.43 3.59 0.00 2.85
3136 3601 2.045926 CAGGTTCGGGCCCTCTTG 60.046 66.667 22.43 12.77 0.00 3.02
3138 3603 1.616628 AGGTTCGGGCCCTCTTGAT 60.617 57.895 22.43 0.00 0.00 2.57
3139 3604 1.452108 GGTTCGGGCCCTCTTGATG 60.452 63.158 22.43 1.43 0.00 3.07
3140 3605 1.452108 GTTCGGGCCCTCTTGATGG 60.452 63.158 22.43 0.54 0.00 3.51
3141 3606 1.615124 TTCGGGCCCTCTTGATGGA 60.615 57.895 22.43 3.53 0.00 3.41
3151 3616 4.625607 CCTCTTGATGGAGGTAATACCC 57.374 50.000 5.71 0.00 45.65 3.69
3153 3618 5.403512 CCTCTTGATGGAGGTAATACCCTA 58.596 45.833 5.71 0.00 45.65 3.53
3154 3619 5.246429 CCTCTTGATGGAGGTAATACCCTAC 59.754 48.000 5.71 0.00 45.65 3.18
3155 3620 4.831155 TCTTGATGGAGGTAATACCCTACG 59.169 45.833 5.71 0.00 38.41 3.51
3157 3622 4.780275 GATGGAGGTAATACCCTACGTC 57.220 50.000 5.71 4.23 42.79 4.34
3158 3623 4.994099 TGATGGAGGTAATACCCTACGTCC 60.994 50.000 5.71 13.14 46.94 4.79
3161 3626 2.295629 GAGGTAATACCCTACGTCCTGC 59.704 54.545 5.71 0.00 39.75 4.85
3162 3627 2.091444 AGGTAATACCCTACGTCCTGCT 60.091 50.000 5.71 0.00 39.75 4.24
3165 3630 1.120530 ATACCCTACGTCCTGCTTGG 58.879 55.000 0.00 0.00 37.10 3.61
3166 3631 0.251922 TACCCTACGTCCTGCTTGGT 60.252 55.000 0.00 0.00 37.07 3.67
3169 3634 1.276989 CCCTACGTCCTGCTTGGTTTA 59.723 52.381 0.00 0.00 37.07 2.01
3171 3636 3.133362 CCCTACGTCCTGCTTGGTTTATA 59.867 47.826 0.00 0.00 37.07 0.98
3172 3637 4.202326 CCCTACGTCCTGCTTGGTTTATAT 60.202 45.833 0.00 0.00 37.07 0.86
3174 3639 5.236478 CCTACGTCCTGCTTGGTTTATATTG 59.764 44.000 0.00 0.00 37.07 1.90
3175 3640 4.839121 ACGTCCTGCTTGGTTTATATTGA 58.161 39.130 0.00 0.00 37.07 2.57
3177 3642 5.296780 ACGTCCTGCTTGGTTTATATTGATG 59.703 40.000 0.00 0.00 37.07 3.07
3178 3643 5.527214 CGTCCTGCTTGGTTTATATTGATGA 59.473 40.000 0.00 0.00 37.07 2.92
3179 3644 6.038161 CGTCCTGCTTGGTTTATATTGATGAA 59.962 38.462 0.00 0.00 37.07 2.57
3181 3646 9.066892 GTCCTGCTTGGTTTATATTGATGAATA 57.933 33.333 0.00 0.00 37.07 1.75
3183 3648 8.017373 CCTGCTTGGTTTATATTGATGAATACG 58.983 37.037 0.00 0.00 0.00 3.06
3184 3649 8.669946 TGCTTGGTTTATATTGATGAATACGA 57.330 30.769 0.00 0.00 0.00 3.43
3206 3719 7.705214 ACGAGTATTACAAGAGTTGATCTACC 58.295 38.462 3.54 0.00 37.23 3.18
3208 3721 7.644551 CGAGTATTACAAGAGTTGATCTACCAC 59.355 40.741 3.54 0.00 37.23 4.16
3209 3722 7.481642 AGTATTACAAGAGTTGATCTACCACG 58.518 38.462 3.54 0.00 37.23 4.94
3210 3723 5.970317 TTACAAGAGTTGATCTACCACGA 57.030 39.130 3.54 0.00 37.23 4.35
3211 3724 4.442375 ACAAGAGTTGATCTACCACGAG 57.558 45.455 3.54 1.07 37.23 4.18
3212 3725 4.079970 ACAAGAGTTGATCTACCACGAGA 58.920 43.478 3.54 0.00 37.23 4.04
3213 3726 4.707448 ACAAGAGTTGATCTACCACGAGAT 59.293 41.667 3.54 0.00 37.23 2.75
3229 3742 3.057734 CGAGATCGTAATGGCTAAACCC 58.942 50.000 0.00 0.00 33.83 4.11
3230 3743 3.243771 CGAGATCGTAATGGCTAAACCCT 60.244 47.826 0.00 0.00 33.83 4.34
3231 3744 4.022589 CGAGATCGTAATGGCTAAACCCTA 60.023 45.833 0.00 0.00 33.83 3.53
3233 3746 5.145564 AGATCGTAATGGCTAAACCCTAGA 58.854 41.667 0.00 0.00 37.83 2.43
3234 3747 5.601313 AGATCGTAATGGCTAAACCCTAGAA 59.399 40.000 0.00 0.00 37.83 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.436115 GGAGCTGTAACCGGCCAC 60.436 66.667 0.00 0.00 44.53 5.01
80 81 5.809001 TGCTGGAACTAGAATCAACAGAAT 58.191 37.500 0.00 0.00 0.00 2.40
81 82 5.227569 TGCTGGAACTAGAATCAACAGAA 57.772 39.130 0.00 0.00 0.00 3.02
94 95 2.040278 TGCCACTAGAATTGCTGGAACT 59.960 45.455 0.00 0.00 0.00 3.01
204 205 1.669211 GCCGTCGAAAGAGCTACAACT 60.669 52.381 0.00 0.00 43.49 3.16
402 451 4.386413 CCGCAGGCACTTCTTCTT 57.614 55.556 0.00 0.00 46.14 2.52
434 483 1.136500 GACACGTGTCTCCCTTATCCC 59.864 57.143 35.51 10.35 41.65 3.85
443 492 1.125021 CAGAAATGCGACACGTGTCTC 59.875 52.381 37.63 32.73 42.66 3.36
444 493 1.139989 CAGAAATGCGACACGTGTCT 58.860 50.000 37.63 23.86 42.66 3.41
445 494 0.163788 CCAGAAATGCGACACGTGTC 59.836 55.000 33.76 33.76 41.47 3.67
446 495 0.531974 ACCAGAAATGCGACACGTGT 60.532 50.000 23.64 23.64 0.00 4.49
447 496 0.110688 CACCAGAAATGCGACACGTG 60.111 55.000 15.48 15.48 0.00 4.49
448 497 1.227999 CCACCAGAAATGCGACACGT 61.228 55.000 0.00 0.00 0.00 4.49
449 498 1.227999 ACCACCAGAAATGCGACACG 61.228 55.000 0.00 0.00 0.00 4.49
450 499 0.951558 AACCACCAGAAATGCGACAC 59.048 50.000 0.00 0.00 0.00 3.67
451 500 0.950836 CAACCACCAGAAATGCGACA 59.049 50.000 0.00 0.00 0.00 4.35
452 501 0.387239 GCAACCACCAGAAATGCGAC 60.387 55.000 0.00 0.00 0.00 5.19
453 502 0.537143 AGCAACCACCAGAAATGCGA 60.537 50.000 0.00 0.00 41.72 5.10
454 503 0.314935 AAGCAACCACCAGAAATGCG 59.685 50.000 0.00 0.00 41.72 4.73
455 504 1.340889 TGAAGCAACCACCAGAAATGC 59.659 47.619 0.00 0.00 37.28 3.56
456 505 3.256383 TGATGAAGCAACCACCAGAAATG 59.744 43.478 0.00 0.00 0.00 2.32
457 506 3.256631 GTGATGAAGCAACCACCAGAAAT 59.743 43.478 0.00 0.00 0.00 2.17
458 507 2.622942 GTGATGAAGCAACCACCAGAAA 59.377 45.455 0.00 0.00 0.00 2.52
459 508 2.229792 GTGATGAAGCAACCACCAGAA 58.770 47.619 0.00 0.00 0.00 3.02
460 509 1.142667 TGTGATGAAGCAACCACCAGA 59.857 47.619 0.00 0.00 0.00 3.86
461 510 1.608055 TGTGATGAAGCAACCACCAG 58.392 50.000 0.00 0.00 0.00 4.00
462 511 1.887854 CATGTGATGAAGCAACCACCA 59.112 47.619 0.00 0.00 0.00 4.17
463 512 1.203052 CCATGTGATGAAGCAACCACC 59.797 52.381 0.00 0.00 0.00 4.61
464 513 1.203052 CCCATGTGATGAAGCAACCAC 59.797 52.381 0.00 0.00 0.00 4.16
465 514 1.548081 CCCATGTGATGAAGCAACCA 58.452 50.000 0.00 0.00 0.00 3.67
466 515 0.174162 GCCCATGTGATGAAGCAACC 59.826 55.000 0.00 0.00 32.02 3.77
467 516 0.174162 GGCCCATGTGATGAAGCAAC 59.826 55.000 0.00 0.00 32.95 4.17
468 517 0.251698 TGGCCCATGTGATGAAGCAA 60.252 50.000 0.00 0.00 32.95 3.91
469 518 0.251698 TTGGCCCATGTGATGAAGCA 60.252 50.000 0.00 0.00 32.95 3.91
470 519 0.174162 GTTGGCCCATGTGATGAAGC 59.826 55.000 0.00 0.00 0.00 3.86
471 520 0.452987 CGTTGGCCCATGTGATGAAG 59.547 55.000 0.00 0.00 0.00 3.02
472 521 0.251121 ACGTTGGCCCATGTGATGAA 60.251 50.000 0.00 0.00 0.00 2.57
473 522 0.959867 CACGTTGGCCCATGTGATGA 60.960 55.000 21.85 0.00 34.29 2.92
474 523 1.507630 CACGTTGGCCCATGTGATG 59.492 57.895 21.85 0.00 34.29 3.07
475 524 2.342650 GCACGTTGGCCCATGTGAT 61.343 57.895 28.61 0.00 34.29 3.06
476 525 2.983030 GCACGTTGGCCCATGTGA 60.983 61.111 28.61 0.00 34.29 3.58
477 526 4.403137 CGCACGTTGGCCCATGTG 62.403 66.667 22.00 22.00 35.48 3.21
496 545 4.087892 TCTTCAGCCGGCAGCCTC 62.088 66.667 31.54 0.63 45.47 4.70
497 546 4.400961 GTCTTCAGCCGGCAGCCT 62.401 66.667 31.54 4.11 45.47 4.58
498 547 4.400961 AGTCTTCAGCCGGCAGCC 62.401 66.667 31.54 7.29 45.47 4.85
499 548 2.817396 GAGTCTTCAGCCGGCAGC 60.817 66.667 31.54 13.20 44.25 5.25
500 549 2.507992 CGAGTCTTCAGCCGGCAG 60.508 66.667 31.54 22.82 0.00 4.85
501 550 4.742201 GCGAGTCTTCAGCCGGCA 62.742 66.667 31.54 5.56 0.00 5.69
502 551 4.443266 AGCGAGTCTTCAGCCGGC 62.443 66.667 21.89 21.89 0.00 6.13
503 552 2.202676 GAGCGAGTCTTCAGCCGG 60.203 66.667 0.00 0.00 0.00 6.13
504 553 2.578178 CGAGCGAGTCTTCAGCCG 60.578 66.667 0.00 0.00 0.00 5.52
505 554 1.080434 AACGAGCGAGTCTTCAGCC 60.080 57.895 0.00 0.00 0.00 4.85
506 555 0.664767 ACAACGAGCGAGTCTTCAGC 60.665 55.000 0.00 0.00 0.00 4.26
507 556 1.056103 CACAACGAGCGAGTCTTCAG 58.944 55.000 0.00 0.00 0.00 3.02
508 557 0.939577 GCACAACGAGCGAGTCTTCA 60.940 55.000 0.00 0.00 0.00 3.02
509 558 1.618640 GGCACAACGAGCGAGTCTTC 61.619 60.000 0.00 0.00 0.00 2.87
510 559 1.664965 GGCACAACGAGCGAGTCTT 60.665 57.895 0.00 0.00 0.00 3.01
511 560 2.049063 GGCACAACGAGCGAGTCT 60.049 61.111 0.00 0.00 0.00 3.24
512 561 3.470567 CGGCACAACGAGCGAGTC 61.471 66.667 0.00 0.00 35.47 3.36
515 564 4.595538 AACCGGCACAACGAGCGA 62.596 61.111 0.00 0.00 35.47 4.93
516 565 1.833434 TAAAACCGGCACAACGAGCG 61.833 55.000 0.00 0.00 35.47 5.03
517 566 0.308376 TTAAAACCGGCACAACGAGC 59.692 50.000 0.00 0.00 35.47 5.03
518 567 2.377880 GTTTAAAACCGGCACAACGAG 58.622 47.619 0.00 0.00 35.47 4.18
519 568 1.267932 CGTTTAAAACCGGCACAACGA 60.268 47.619 15.88 0.00 39.43 3.85
520 569 1.114047 CGTTTAAAACCGGCACAACG 58.886 50.000 0.00 5.96 0.00 4.10
521 570 2.191815 ACGTTTAAAACCGGCACAAC 57.808 45.000 0.00 0.00 0.00 3.32
522 571 2.935481 AACGTTTAAAACCGGCACAA 57.065 40.000 0.00 0.00 0.00 3.33
523 572 2.935481 AAACGTTTAAAACCGGCACA 57.065 40.000 12.83 0.00 0.00 4.57
524 573 2.535166 GGAAAACGTTTAAAACCGGCAC 59.465 45.455 15.03 0.00 0.00 5.01
525 574 2.426381 AGGAAAACGTTTAAAACCGGCA 59.574 40.909 15.03 0.00 0.00 5.69
526 575 3.082698 AGGAAAACGTTTAAAACCGGC 57.917 42.857 15.03 0.00 0.00 6.13
527 576 7.697352 ATTTTAGGAAAACGTTTAAAACCGG 57.303 32.000 15.03 0.00 32.37 5.28
562 611 9.423061 CCGTTTCTCTTTATGGATTTTGAATTT 57.577 29.630 0.00 0.00 0.00 1.82
563 612 8.802267 TCCGTTTCTCTTTATGGATTTTGAATT 58.198 29.630 0.00 0.00 0.00 2.17
564 613 8.348285 TCCGTTTCTCTTTATGGATTTTGAAT 57.652 30.769 0.00 0.00 0.00 2.57
565 614 7.753309 TCCGTTTCTCTTTATGGATTTTGAA 57.247 32.000 0.00 0.00 0.00 2.69
566 615 7.753309 TTCCGTTTCTCTTTATGGATTTTGA 57.247 32.000 0.00 0.00 29.89 2.69
567 616 8.296713 TCTTTCCGTTTCTCTTTATGGATTTTG 58.703 33.333 0.00 0.00 29.89 2.44
568 617 8.297426 GTCTTTCCGTTTCTCTTTATGGATTTT 58.703 33.333 0.00 0.00 29.89 1.82
569 618 7.447238 TGTCTTTCCGTTTCTCTTTATGGATTT 59.553 33.333 0.00 0.00 29.89 2.17
570 619 6.940298 TGTCTTTCCGTTTCTCTTTATGGATT 59.060 34.615 0.00 0.00 29.89 3.01
571 620 6.472887 TGTCTTTCCGTTTCTCTTTATGGAT 58.527 36.000 0.00 0.00 29.89 3.41
572 621 5.860611 TGTCTTTCCGTTTCTCTTTATGGA 58.139 37.500 0.00 0.00 0.00 3.41
573 622 6.554334 TTGTCTTTCCGTTTCTCTTTATGG 57.446 37.500 0.00 0.00 0.00 2.74
574 623 7.750903 GGATTTGTCTTTCCGTTTCTCTTTATG 59.249 37.037 0.00 0.00 0.00 1.90
575 624 7.817641 GGATTTGTCTTTCCGTTTCTCTTTAT 58.182 34.615 0.00 0.00 0.00 1.40
576 625 7.198306 GGATTTGTCTTTCCGTTTCTCTTTA 57.802 36.000 0.00 0.00 0.00 1.85
577 626 6.073327 GGATTTGTCTTTCCGTTTCTCTTT 57.927 37.500 0.00 0.00 0.00 2.52
578 627 5.690997 GGATTTGTCTTTCCGTTTCTCTT 57.309 39.130 0.00 0.00 0.00 2.85
587 636 1.134946 CCATGCCGGATTTGTCTTTCC 59.865 52.381 5.05 0.00 36.56 3.13
588 637 1.818674 ACCATGCCGGATTTGTCTTTC 59.181 47.619 5.05 0.00 38.63 2.62
589 638 1.923356 ACCATGCCGGATTTGTCTTT 58.077 45.000 5.05 0.00 38.63 2.52
590 639 2.799126 TACCATGCCGGATTTGTCTT 57.201 45.000 5.05 0.00 38.63 3.01
591 640 2.951642 CAATACCATGCCGGATTTGTCT 59.048 45.455 5.05 0.00 38.63 3.41
592 641 2.034558 CCAATACCATGCCGGATTTGTC 59.965 50.000 5.05 0.00 38.63 3.18
593 642 2.031120 CCAATACCATGCCGGATTTGT 58.969 47.619 5.05 0.00 38.63 2.83
594 643 2.031120 ACCAATACCATGCCGGATTTG 58.969 47.619 5.05 0.00 38.63 2.32
595 644 2.452600 ACCAATACCATGCCGGATTT 57.547 45.000 5.05 0.00 38.63 2.17
596 645 2.452600 AACCAATACCATGCCGGATT 57.547 45.000 5.05 0.00 38.63 3.01
597 646 2.441750 ACTAACCAATACCATGCCGGAT 59.558 45.455 5.05 0.00 38.63 4.18
598 647 1.841277 ACTAACCAATACCATGCCGGA 59.159 47.619 5.05 0.00 38.63 5.14
599 648 1.946768 CACTAACCAATACCATGCCGG 59.053 52.381 0.00 0.00 42.50 6.13
600 649 2.612212 GACACTAACCAATACCATGCCG 59.388 50.000 0.00 0.00 0.00 5.69
601 650 3.627577 CAGACACTAACCAATACCATGCC 59.372 47.826 0.00 0.00 0.00 4.40
602 651 4.513442 TCAGACACTAACCAATACCATGC 58.487 43.478 0.00 0.00 0.00 4.06
603 652 5.734720 ACTCAGACACTAACCAATACCATG 58.265 41.667 0.00 0.00 0.00 3.66
604 653 6.374417 AACTCAGACACTAACCAATACCAT 57.626 37.500 0.00 0.00 0.00 3.55
605 654 5.818678 AACTCAGACACTAACCAATACCA 57.181 39.130 0.00 0.00 0.00 3.25
606 655 7.506328 AAAAACTCAGACACTAACCAATACC 57.494 36.000 0.00 0.00 0.00 2.73
611 660 9.796120 CAAAAATAAAAACTCAGACACTAACCA 57.204 29.630 0.00 0.00 0.00 3.67
612 661 9.797556 ACAAAAATAAAAACTCAGACACTAACC 57.202 29.630 0.00 0.00 0.00 2.85
615 664 9.403583 AGGACAAAAATAAAAACTCAGACACTA 57.596 29.630 0.00 0.00 0.00 2.74
616 665 8.293699 AGGACAAAAATAAAAACTCAGACACT 57.706 30.769 0.00 0.00 0.00 3.55
617 666 8.926715 AAGGACAAAAATAAAAACTCAGACAC 57.073 30.769 0.00 0.00 0.00 3.67
618 667 9.581099 GAAAGGACAAAAATAAAAACTCAGACA 57.419 29.630 0.00 0.00 0.00 3.41
619 668 9.803315 AGAAAGGACAAAAATAAAAACTCAGAC 57.197 29.630 0.00 0.00 0.00 3.51
620 669 9.801873 CAGAAAGGACAAAAATAAAAACTCAGA 57.198 29.630 0.00 0.00 0.00 3.27
621 670 9.586435 ACAGAAAGGACAAAAATAAAAACTCAG 57.414 29.630 0.00 0.00 0.00 3.35
632 681 9.883142 ACATTTGAAATACAGAAAGGACAAAAA 57.117 25.926 0.00 0.00 31.61 1.94
633 682 9.883142 AACATTTGAAATACAGAAAGGACAAAA 57.117 25.926 0.00 0.00 31.61 2.44
634 683 9.311916 CAACATTTGAAATACAGAAAGGACAAA 57.688 29.630 0.00 0.00 0.00 2.83
635 684 7.925483 CCAACATTTGAAATACAGAAAGGACAA 59.075 33.333 0.00 0.00 0.00 3.18
636 685 7.286546 TCCAACATTTGAAATACAGAAAGGACA 59.713 33.333 0.00 0.00 0.00 4.02
637 686 7.657336 TCCAACATTTGAAATACAGAAAGGAC 58.343 34.615 0.00 0.00 0.00 3.85
638 687 7.831691 TCCAACATTTGAAATACAGAAAGGA 57.168 32.000 0.00 0.00 0.00 3.36
639 688 9.492973 AAATCCAACATTTGAAATACAGAAAGG 57.507 29.630 0.00 0.00 0.00 3.11
644 693 9.787532 ACGATAAATCCAACATTTGAAATACAG 57.212 29.630 0.00 0.00 0.00 2.74
650 699 9.319143 ACAAAAACGATAAATCCAACATTTGAA 57.681 25.926 0.00 0.00 0.00 2.69
651 700 8.879342 ACAAAAACGATAAATCCAACATTTGA 57.121 26.923 0.00 0.00 0.00 2.69
656 705 9.226606 AGAGATACAAAAACGATAAATCCAACA 57.773 29.630 0.00 0.00 0.00 3.33
668 717 9.250986 CGAAATACAGAAAGAGATACAAAAACG 57.749 33.333 0.00 0.00 0.00 3.60
683 732 9.825972 GTTCAGATCAAAATTCGAAATACAGAA 57.174 29.630 0.00 0.00 0.00 3.02
684 733 9.219603 AGTTCAGATCAAAATTCGAAATACAGA 57.780 29.630 0.00 0.00 0.00 3.41
685 734 9.831737 AAGTTCAGATCAAAATTCGAAATACAG 57.168 29.630 0.00 0.00 0.00 2.74
705 754 9.787435 ACATGTCTACAACCTATAAAAAGTTCA 57.213 29.630 0.00 0.00 0.00 3.18
710 759 9.787435 ACAAGACATGTCTACAACCTATAAAAA 57.213 29.630 28.10 0.00 37.96 1.94
714 763 9.865321 GTTTACAAGACATGTCTACAACCTATA 57.135 33.333 28.10 2.82 42.70 1.31
715 764 8.372459 TGTTTACAAGACATGTCTACAACCTAT 58.628 33.333 28.10 7.69 42.70 2.57
716 765 7.728148 TGTTTACAAGACATGTCTACAACCTA 58.272 34.615 28.10 10.80 42.70 3.08
717 766 6.588204 TGTTTACAAGACATGTCTACAACCT 58.412 36.000 28.10 9.23 42.70 3.50
718 767 6.854496 TGTTTACAAGACATGTCTACAACC 57.146 37.500 28.10 14.69 42.70 3.77
719 768 7.172532 TGGATGTTTACAAGACATGTCTACAAC 59.827 37.037 28.10 23.09 42.70 3.32
720 769 7.172532 GTGGATGTTTACAAGACATGTCTACAA 59.827 37.037 28.10 18.20 42.70 2.41
721 770 6.649141 GTGGATGTTTACAAGACATGTCTACA 59.351 38.462 28.10 25.58 42.70 2.74
722 771 6.649141 TGTGGATGTTTACAAGACATGTCTAC 59.351 38.462 28.10 21.15 42.70 2.59
723 772 6.649141 GTGTGGATGTTTACAAGACATGTCTA 59.351 38.462 28.10 10.78 42.70 2.59
724 773 5.470098 GTGTGGATGTTTACAAGACATGTCT 59.530 40.000 22.89 22.89 42.70 3.41
725 774 5.238432 TGTGTGGATGTTTACAAGACATGTC 59.762 40.000 18.47 18.47 42.70 3.06
726 775 5.129634 TGTGTGGATGTTTACAAGACATGT 58.870 37.500 0.00 0.00 46.36 3.21
727 776 5.687770 TGTGTGGATGTTTACAAGACATG 57.312 39.130 0.00 0.00 37.83 3.21
728 777 6.707440 TTTGTGTGGATGTTTACAAGACAT 57.293 33.333 0.00 0.00 40.27 3.06
729 778 6.516739 TTTTGTGTGGATGTTTACAAGACA 57.483 33.333 0.00 0.00 34.86 3.41
751 800 9.956720 CTAAGTGTGTCAAAAAGATCTGATTTT 57.043 29.630 0.00 0.00 0.00 1.82
752 801 9.342308 TCTAAGTGTGTCAAAAAGATCTGATTT 57.658 29.630 0.00 0.00 0.00 2.17
753 802 8.908786 TCTAAGTGTGTCAAAAAGATCTGATT 57.091 30.769 0.00 0.00 0.00 2.57
754 803 9.512588 AATCTAAGTGTGTCAAAAAGATCTGAT 57.487 29.630 0.00 0.00 0.00 2.90
755 804 8.908786 AATCTAAGTGTGTCAAAAAGATCTGA 57.091 30.769 0.00 0.00 0.00 3.27
756 805 9.956720 AAAATCTAAGTGTGTCAAAAAGATCTG 57.043 29.630 0.00 0.00 0.00 2.90
786 835 9.751542 TGCTCCGACTTTGAAAATAAAAATAAA 57.248 25.926 0.00 0.00 0.00 1.40
787 836 9.921637 ATGCTCCGACTTTGAAAATAAAAATAA 57.078 25.926 0.00 0.00 0.00 1.40
788 837 9.352784 CATGCTCCGACTTTGAAAATAAAAATA 57.647 29.630 0.00 0.00 0.00 1.40
789 838 7.872483 ACATGCTCCGACTTTGAAAATAAAAAT 59.128 29.630 0.00 0.00 0.00 1.82
790 839 7.206687 ACATGCTCCGACTTTGAAAATAAAAA 58.793 30.769 0.00 0.00 0.00 1.94
791 840 6.744112 ACATGCTCCGACTTTGAAAATAAAA 58.256 32.000 0.00 0.00 0.00 1.52
792 841 6.325919 ACATGCTCCGACTTTGAAAATAAA 57.674 33.333 0.00 0.00 0.00 1.40
793 842 5.957842 ACATGCTCCGACTTTGAAAATAA 57.042 34.783 0.00 0.00 0.00 1.40
794 843 5.957842 AACATGCTCCGACTTTGAAAATA 57.042 34.783 0.00 0.00 0.00 1.40
795 844 4.853924 AACATGCTCCGACTTTGAAAAT 57.146 36.364 0.00 0.00 0.00 1.82
796 845 4.819630 ACTAACATGCTCCGACTTTGAAAA 59.180 37.500 0.00 0.00 0.00 2.29
797 846 4.213270 CACTAACATGCTCCGACTTTGAAA 59.787 41.667 0.00 0.00 0.00 2.69
798 847 3.745975 CACTAACATGCTCCGACTTTGAA 59.254 43.478 0.00 0.00 0.00 2.69
799 848 3.244078 ACACTAACATGCTCCGACTTTGA 60.244 43.478 0.00 0.00 0.00 2.69
800 849 3.067106 ACACTAACATGCTCCGACTTTG 58.933 45.455 0.00 0.00 0.00 2.77
801 850 3.402628 ACACTAACATGCTCCGACTTT 57.597 42.857 0.00 0.00 0.00 2.66
802 851 3.067106 CAACACTAACATGCTCCGACTT 58.933 45.455 0.00 0.00 0.00 3.01
803 852 2.688507 CAACACTAACATGCTCCGACT 58.311 47.619 0.00 0.00 0.00 4.18
804 853 1.128692 GCAACACTAACATGCTCCGAC 59.871 52.381 0.00 0.00 37.12 4.79
805 854 1.270571 TGCAACACTAACATGCTCCGA 60.271 47.619 0.00 0.00 40.66 4.55
820 869 2.945668 GGGAAGTATCAGGTGATGCAAC 59.054 50.000 10.23 0.00 39.23 4.17
966 1023 0.926846 GAGTCGTAGTCGTAGTCGGG 59.073 60.000 0.00 0.00 38.33 5.14
1001 1059 4.097286 GGGTGGTGTGTTTCGCATTATAAT 59.903 41.667 0.00 0.00 0.00 1.28
1121 1197 3.494254 TGGTGGAAAGGTGGCGGT 61.494 61.111 0.00 0.00 0.00 5.68
1232 1308 3.191162 CCGATTCATGCTTGAAGTTGGAA 59.809 43.478 18.58 0.00 44.75 3.53
1901 1983 1.376424 CAGCCGCATGAAGACCTGT 60.376 57.895 0.00 0.00 0.00 4.00
2043 2125 1.934589 TACCATGGACGCAAAGATCG 58.065 50.000 21.47 0.00 0.00 3.69
2047 2129 2.811431 TCAAGTTACCATGGACGCAAAG 59.189 45.455 21.47 2.55 0.00 2.77
2066 2155 3.192844 CCGCTGGTTTAGTACTCTCTTCA 59.807 47.826 0.00 0.00 0.00 3.02
2157 2440 9.120538 ACTGAAATCTAGTGCTTGAACTTTAAA 57.879 29.630 0.00 0.00 0.00 1.52
2158 2441 8.677148 ACTGAAATCTAGTGCTTGAACTTTAA 57.323 30.769 0.00 0.00 0.00 1.52
2159 2442 9.772973 TTACTGAAATCTAGTGCTTGAACTTTA 57.227 29.630 0.00 0.00 0.00 1.85
2199 2491 4.883083 ACTATGAAGCTTCACTGAAACGA 58.117 39.130 30.66 5.52 40.49 3.85
2310 2652 4.586884 AGTATCGACTAGTTGGTGTCAGA 58.413 43.478 10.33 0.00 32.65 3.27
2311 2653 4.966965 AGTATCGACTAGTTGGTGTCAG 57.033 45.455 10.33 0.00 32.65 3.51
2312 2654 5.242171 TCAAAGTATCGACTAGTTGGTGTCA 59.758 40.000 10.33 0.00 33.58 3.58
2313 2655 5.706916 TCAAAGTATCGACTAGTTGGTGTC 58.293 41.667 10.33 1.83 33.58 3.67
2315 2657 6.157211 ACTTCAAAGTATCGACTAGTTGGTG 58.843 40.000 10.33 0.64 37.52 4.17
2316 2658 6.342338 ACTTCAAAGTATCGACTAGTTGGT 57.658 37.500 10.33 5.64 37.52 3.67
2317 2659 6.033619 CGAACTTCAAAGTATCGACTAGTTGG 59.966 42.308 10.33 0.00 39.55 3.77
2318 2660 6.581542 ACGAACTTCAAAGTATCGACTAGTTG 59.418 38.462 22.33 3.44 39.55 3.16
2319 2661 6.581542 CACGAACTTCAAAGTATCGACTAGTT 59.418 38.462 22.33 0.00 39.55 2.24
2320 2662 6.084925 CACGAACTTCAAAGTATCGACTAGT 58.915 40.000 22.33 0.00 39.55 2.57
2460 2808 7.689299 TGGGCAACATTACTATGAAGCTATAT 58.311 34.615 0.00 0.00 36.26 0.86
2624 3080 4.957971 ACGACGAGAAAATTGCATAACAG 58.042 39.130 0.00 0.00 0.00 3.16
2710 3173 2.993899 AGCGTGACGTATCTTGGAAAAG 59.006 45.455 6.91 0.00 0.00 2.27
2743 3208 6.314899 TCCTCTCTCATGTAGAACAGTAGA 57.685 41.667 0.00 0.00 32.46 2.59
2744 3209 7.397892 TTTCCTCTCTCATGTAGAACAGTAG 57.602 40.000 0.00 0.00 32.46 2.57
2745 3210 7.776618 TTTTCCTCTCTCATGTAGAACAGTA 57.223 36.000 0.00 0.00 32.46 2.74
2746 3211 6.672266 TTTTCCTCTCTCATGTAGAACAGT 57.328 37.500 0.00 0.00 32.46 3.55
2747 3212 7.326454 TCATTTTCCTCTCTCATGTAGAACAG 58.674 38.462 0.00 0.00 32.46 3.16
2748 3213 7.244886 TCATTTTCCTCTCTCATGTAGAACA 57.755 36.000 0.00 0.00 32.46 3.18
2749 3214 8.447053 GTTTCATTTTCCTCTCTCATGTAGAAC 58.553 37.037 0.00 0.00 32.46 3.01
2750 3215 8.156820 TGTTTCATTTTCCTCTCTCATGTAGAA 58.843 33.333 0.00 0.00 32.46 2.10
2775 3240 6.851222 ACGAGGAAGTAATTAGCAATGATG 57.149 37.500 0.00 0.00 0.00 3.07
2798 3263 8.934507 AACCAAAACGTTGATTAATTGAGAAA 57.065 26.923 0.00 0.00 36.83 2.52
2818 3283 7.227910 GCCTCGGTTAATTGAGAATATAACCAA 59.772 37.037 12.50 0.00 44.82 3.67
2842 3307 2.410469 GGATCTTGTGCGCATGCC 59.590 61.111 15.91 0.09 41.78 4.40
2849 3314 3.195698 GCCGGTCGGATCTTGTGC 61.196 66.667 14.15 0.00 37.50 4.57
2851 3316 2.579201 CAGCCGGTCGGATCTTGT 59.421 61.111 14.15 0.00 37.50 3.16
2852 3317 2.202932 CCAGCCGGTCGGATCTTG 60.203 66.667 14.15 5.33 37.50 3.02
2853 3318 4.162690 GCCAGCCGGTCGGATCTT 62.163 66.667 14.15 0.00 37.50 2.40
2865 3330 4.120331 AAATCAAGCGCCGCCAGC 62.120 61.111 4.98 0.00 38.52 4.85
2866 3331 2.100991 GAAATCAAGCGCCGCCAG 59.899 61.111 4.98 0.00 0.00 4.85
2867 3332 3.798650 CGAAATCAAGCGCCGCCA 61.799 61.111 4.98 0.00 0.00 5.69
2874 3339 2.399611 CCGTCCGCGAAATCAAGC 59.600 61.111 8.23 0.00 41.33 4.01
2876 3341 2.047655 AGCCGTCCGCGAAATCAA 60.048 55.556 8.23 0.00 44.76 2.57
2877 3342 2.813474 CAGCCGTCCGCGAAATCA 60.813 61.111 8.23 0.00 44.76 2.57
2878 3343 3.564027 CCAGCCGTCCGCGAAATC 61.564 66.667 8.23 0.00 44.76 2.17
2890 3355 3.885521 GATCAAGCGCTGCCAGCC 61.886 66.667 12.58 4.00 38.18 4.85
2891 3356 3.885521 GGATCAAGCGCTGCCAGC 61.886 66.667 12.58 6.63 38.02 4.85
2892 3357 3.570638 CGGATCAAGCGCTGCCAG 61.571 66.667 12.58 1.19 0.00 4.85
2893 3358 4.081185 TCGGATCAAGCGCTGCCA 62.081 61.111 12.58 0.00 0.00 4.92
2894 3359 3.267860 CTCGGATCAAGCGCTGCC 61.268 66.667 12.58 9.85 0.00 4.85
2895 3360 3.934684 GCTCGGATCAAGCGCTGC 61.935 66.667 12.58 2.83 0.00 5.25
2901 3366 4.207281 TCGGCCGCTCGGATCAAG 62.207 66.667 23.51 0.00 37.50 3.02
2902 3367 4.508128 GTCGGCCGCTCGGATCAA 62.508 66.667 23.51 0.00 37.50 2.57
2904 3369 4.508128 TTGTCGGCCGCTCGGATC 62.508 66.667 23.51 4.98 37.50 3.36
2905 3370 4.814294 GTTGTCGGCCGCTCGGAT 62.814 66.667 23.51 0.00 37.50 4.18
2912 3377 1.082117 AAATCTAGCGTTGTCGGCCG 61.082 55.000 22.12 22.12 37.56 6.13
2913 3378 1.084289 AAAATCTAGCGTTGTCGGCC 58.916 50.000 0.00 0.00 37.56 6.13
2914 3379 1.202031 CCAAAATCTAGCGTTGTCGGC 60.202 52.381 0.00 0.00 37.56 5.54
2915 3380 1.396996 CCCAAAATCTAGCGTTGTCGG 59.603 52.381 0.00 0.00 37.56 4.79
2916 3381 1.396996 CCCCAAAATCTAGCGTTGTCG 59.603 52.381 0.00 0.00 40.37 4.35
2917 3382 2.418976 GTCCCCAAAATCTAGCGTTGTC 59.581 50.000 0.00 0.00 0.00 3.18
2918 3383 2.433436 GTCCCCAAAATCTAGCGTTGT 58.567 47.619 0.00 0.00 0.00 3.32
2919 3384 1.743394 GGTCCCCAAAATCTAGCGTTG 59.257 52.381 0.00 0.00 0.00 4.10
2920 3385 1.677820 CGGTCCCCAAAATCTAGCGTT 60.678 52.381 0.00 0.00 0.00 4.84
2921 3386 0.107848 CGGTCCCCAAAATCTAGCGT 60.108 55.000 0.00 0.00 0.00 5.07
2922 3387 1.436983 GCGGTCCCCAAAATCTAGCG 61.437 60.000 0.00 0.00 0.00 4.26
2923 3388 1.101635 GGCGGTCCCCAAAATCTAGC 61.102 60.000 0.00 0.00 0.00 3.42
2924 3389 0.814010 CGGCGGTCCCCAAAATCTAG 60.814 60.000 0.00 0.00 0.00 2.43
2925 3390 1.222387 CGGCGGTCCCCAAAATCTA 59.778 57.895 0.00 0.00 0.00 1.98
2926 3391 2.045340 CGGCGGTCCCCAAAATCT 60.045 61.111 0.00 0.00 0.00 2.40
2927 3392 3.138128 CCGGCGGTCCCCAAAATC 61.138 66.667 19.97 0.00 0.00 2.17
2928 3393 3.974293 ACCGGCGGTCCCCAAAAT 61.974 61.111 28.83 0.00 0.00 1.82
2929 3394 4.958897 CACCGGCGGTCCCCAAAA 62.959 66.667 31.82 0.00 31.02 2.44
2940 3405 3.683587 GAAATCAAGCGCCACCGGC 62.684 63.158 2.29 0.00 46.75 6.13
2941 3406 2.485122 GAAATCAAGCGCCACCGG 59.515 61.111 2.29 0.00 34.32 5.28
2942 3407 2.098298 CGAAATCAAGCGCCACCG 59.902 61.111 2.29 0.00 37.57 4.94
2949 3414 1.735973 GCCATCCCCGAAATCAAGC 59.264 57.895 0.00 0.00 0.00 4.01
2960 3425 4.875713 AACATCGCCCGCCATCCC 62.876 66.667 0.00 0.00 0.00 3.85
2961 3426 2.828549 AAACATCGCCCGCCATCC 60.829 61.111 0.00 0.00 0.00 3.51
2963 3428 1.453745 ATCAAACATCGCCCGCCAT 60.454 52.632 0.00 0.00 0.00 4.40
2964 3429 2.045438 ATCAAACATCGCCCGCCA 60.045 55.556 0.00 0.00 0.00 5.69
2965 3430 2.408835 CATCAAACATCGCCCGCC 59.591 61.111 0.00 0.00 0.00 6.13
2966 3431 2.278142 GCATCAAACATCGCCCGC 60.278 61.111 0.00 0.00 0.00 6.13
2967 3432 2.023181 CGCATCAAACATCGCCCG 59.977 61.111 0.00 0.00 0.00 6.13
2968 3433 1.353103 CTCGCATCAAACATCGCCC 59.647 57.895 0.00 0.00 0.00 6.13
2969 3434 0.247814 CACTCGCATCAAACATCGCC 60.248 55.000 0.00 0.00 0.00 5.54
2970 3435 0.247814 CCACTCGCATCAAACATCGC 60.248 55.000 0.00 0.00 0.00 4.58
2971 3436 0.247814 GCCACTCGCATCAAACATCG 60.248 55.000 0.00 0.00 37.47 3.84
2972 3437 0.099436 GGCCACTCGCATCAAACATC 59.901 55.000 0.00 0.00 40.31 3.06
2973 3438 1.647545 CGGCCACTCGCATCAAACAT 61.648 55.000 2.24 0.00 40.31 2.71
2974 3439 2.324330 CGGCCACTCGCATCAAACA 61.324 57.895 2.24 0.00 40.31 2.83
2977 3442 2.741985 CACGGCCACTCGCATCAA 60.742 61.111 2.24 0.00 40.31 2.57
2988 3453 2.763627 AAAAATCAAGCGCCACGGCC 62.764 55.000 2.29 0.00 37.98 6.13
2989 3454 1.344226 GAAAAATCAAGCGCCACGGC 61.344 55.000 2.29 0.00 37.85 5.68
2991 3456 1.330306 CTGAAAAATCAAGCGCCACG 58.670 50.000 2.29 0.00 0.00 4.94
2992 3457 1.669795 CCCTGAAAAATCAAGCGCCAC 60.670 52.381 2.29 0.00 0.00 5.01
2995 3460 2.533266 CATCCCTGAAAAATCAAGCGC 58.467 47.619 0.00 0.00 0.00 5.92
2996 3461 2.736400 GCCATCCCTGAAAAATCAAGCG 60.736 50.000 0.00 0.00 0.00 4.68
2997 3462 2.419159 GGCCATCCCTGAAAAATCAAGC 60.419 50.000 0.00 0.00 0.00 4.01
2999 3464 1.824230 CGGCCATCCCTGAAAAATCAA 59.176 47.619 2.24 0.00 0.00 2.57
3000 3465 1.272425 ACGGCCATCCCTGAAAAATCA 60.272 47.619 2.24 0.00 0.00 2.57
3001 3466 1.405463 GACGGCCATCCCTGAAAAATC 59.595 52.381 2.24 0.00 0.00 2.17
3002 3467 1.474330 GACGGCCATCCCTGAAAAAT 58.526 50.000 2.24 0.00 0.00 1.82
3004 3469 1.376683 CGACGGCCATCCCTGAAAA 60.377 57.895 2.24 0.00 0.00 2.29
3005 3470 2.267642 CGACGGCCATCCCTGAAA 59.732 61.111 2.24 0.00 0.00 2.69
3006 3471 4.467084 GCGACGGCCATCCCTGAA 62.467 66.667 2.24 0.00 0.00 3.02
3011 3476 4.451150 TGACAGCGACGGCCATCC 62.451 66.667 2.24 0.00 41.24 3.51
3012 3477 2.887568 CTGACAGCGACGGCCATC 60.888 66.667 2.24 0.00 41.24 3.51
3015 3480 4.664677 ACACTGACAGCGACGGCC 62.665 66.667 1.25 0.00 41.24 6.13
3016 3481 3.106407 GACACTGACAGCGACGGC 61.106 66.667 1.25 0.00 40.37 5.68
3017 3482 0.874175 TTTGACACTGACAGCGACGG 60.874 55.000 1.25 0.00 0.00 4.79
3018 3483 0.927537 TTTTGACACTGACAGCGACG 59.072 50.000 1.25 0.00 0.00 5.12
3019 3484 1.003866 GGTTTTGACACTGACAGCGAC 60.004 52.381 1.25 0.00 0.00 5.19
3021 3486 0.042188 CGGTTTTGACACTGACAGCG 60.042 55.000 1.25 0.00 0.00 5.18
3022 3487 1.295792 TCGGTTTTGACACTGACAGC 58.704 50.000 1.25 0.00 0.00 4.40
3025 3490 0.580104 CCGTCGGTTTTGACACTGAC 59.420 55.000 2.08 3.14 45.98 3.51
3027 3492 1.459592 GATCCGTCGGTTTTGACACTG 59.540 52.381 11.88 0.00 38.84 3.66
3028 3493 1.343465 AGATCCGTCGGTTTTGACACT 59.657 47.619 11.88 0.00 38.84 3.55
3031 3496 0.989890 CGAGATCCGTCGGTTTTGAC 59.010 55.000 11.88 0.00 36.26 3.18
3032 3497 3.411808 CGAGATCCGTCGGTTTTGA 57.588 52.632 11.88 0.00 36.26 2.69
3039 3504 1.229315 CCTCTACCCGAGATCCGTCG 61.229 65.000 0.00 0.00 42.62 5.12
3040 3505 0.890090 CCCTCTACCCGAGATCCGTC 60.890 65.000 0.00 0.00 42.62 4.79
3041 3506 1.150992 CCCTCTACCCGAGATCCGT 59.849 63.158 0.00 0.00 42.62 4.69
3042 3507 0.467659 AACCCTCTACCCGAGATCCG 60.468 60.000 0.00 0.00 42.62 4.18
3043 3508 1.133419 AGAACCCTCTACCCGAGATCC 60.133 57.143 0.00 0.00 42.62 3.36
3044 3509 1.957877 CAGAACCCTCTACCCGAGATC 59.042 57.143 0.00 0.00 42.62 2.75
3047 3512 1.477295 GTTCAGAACCCTCTACCCGAG 59.523 57.143 1.29 0.00 39.57 4.63
3048 3513 1.076677 AGTTCAGAACCCTCTACCCGA 59.923 52.381 9.85 0.00 0.00 5.14
3049 3514 1.204941 CAGTTCAGAACCCTCTACCCG 59.795 57.143 9.85 0.00 0.00 5.28
3050 3515 2.028020 CACAGTTCAGAACCCTCTACCC 60.028 54.545 9.85 0.00 0.00 3.69
3051 3516 2.613223 GCACAGTTCAGAACCCTCTACC 60.613 54.545 9.85 0.00 0.00 3.18
3054 3519 0.034059 CGCACAGTTCAGAACCCTCT 59.966 55.000 9.85 0.00 0.00 3.69
3057 3522 1.021968 AAACGCACAGTTCAGAACCC 58.978 50.000 9.85 0.00 43.37 4.11
3059 3524 3.311596 ACCTTAAACGCACAGTTCAGAAC 59.688 43.478 5.00 5.00 43.37 3.01
3060 3525 3.537580 ACCTTAAACGCACAGTTCAGAA 58.462 40.909 0.00 0.00 43.37 3.02
3061 3526 3.188159 ACCTTAAACGCACAGTTCAGA 57.812 42.857 0.00 0.00 43.37 3.27
3062 3527 3.311322 TCAACCTTAAACGCACAGTTCAG 59.689 43.478 0.00 0.00 43.37 3.02
3063 3528 3.271729 TCAACCTTAAACGCACAGTTCA 58.728 40.909 0.00 0.00 43.37 3.18
3064 3529 3.955771 TCAACCTTAAACGCACAGTTC 57.044 42.857 0.00 0.00 43.37 3.01
3066 3531 2.552315 CCATCAACCTTAAACGCACAGT 59.448 45.455 0.00 0.00 0.00 3.55
3067 3532 2.552315 ACCATCAACCTTAAACGCACAG 59.448 45.455 0.00 0.00 0.00 3.66
3068 3533 2.577700 ACCATCAACCTTAAACGCACA 58.422 42.857 0.00 0.00 0.00 4.57
3069 3534 4.023878 TGTTACCATCAACCTTAAACGCAC 60.024 41.667 0.00 0.00 0.00 5.34
3072 3537 4.998672 TCCTGTTACCATCAACCTTAAACG 59.001 41.667 0.00 0.00 0.00 3.60
3073 3538 6.148976 GTCTCCTGTTACCATCAACCTTAAAC 59.851 42.308 0.00 0.00 0.00 2.01
3075 3540 5.308497 TGTCTCCTGTTACCATCAACCTTAA 59.692 40.000 0.00 0.00 0.00 1.85
3078 3543 3.248024 TGTCTCCTGTTACCATCAACCT 58.752 45.455 0.00 0.00 0.00 3.50
3079 3544 3.600388 CTGTCTCCTGTTACCATCAACC 58.400 50.000 0.00 0.00 0.00 3.77
3080 3545 3.600388 CCTGTCTCCTGTTACCATCAAC 58.400 50.000 0.00 0.00 0.00 3.18
3081 3546 2.571653 CCCTGTCTCCTGTTACCATCAA 59.428 50.000 0.00 0.00 0.00 2.57
3082 3547 2.187958 CCCTGTCTCCTGTTACCATCA 58.812 52.381 0.00 0.00 0.00 3.07
3083 3548 1.486726 CCCCTGTCTCCTGTTACCATC 59.513 57.143 0.00 0.00 0.00 3.51
3085 3550 0.490017 TCCCCTGTCTCCTGTTACCA 59.510 55.000 0.00 0.00 0.00 3.25
3086 3551 0.903236 GTCCCCTGTCTCCTGTTACC 59.097 60.000 0.00 0.00 0.00 2.85
3087 3552 1.275573 GTGTCCCCTGTCTCCTGTTAC 59.724 57.143 0.00 0.00 0.00 2.50
3088 3553 1.640917 GTGTCCCCTGTCTCCTGTTA 58.359 55.000 0.00 0.00 0.00 2.41
3091 3556 0.972983 ATCGTGTCCCCTGTCTCCTG 60.973 60.000 0.00 0.00 0.00 3.86
3093 3558 1.258445 ACATCGTGTCCCCTGTCTCC 61.258 60.000 0.00 0.00 0.00 3.71
3094 3559 0.608640 AACATCGTGTCCCCTGTCTC 59.391 55.000 0.00 0.00 0.00 3.36
3095 3560 1.056660 AAACATCGTGTCCCCTGTCT 58.943 50.000 0.00 0.00 0.00 3.41
3096 3561 1.892209 AAAACATCGTGTCCCCTGTC 58.108 50.000 0.00 0.00 0.00 3.51
3098 3563 2.081462 GGTAAAACATCGTGTCCCCTG 58.919 52.381 0.00 0.00 0.00 4.45
3099 3564 1.003928 GGGTAAAACATCGTGTCCCCT 59.996 52.381 0.00 0.00 0.00 4.79
3100 3565 1.271488 TGGGTAAAACATCGTGTCCCC 60.271 52.381 8.90 0.00 33.19 4.81
3101 3566 2.081462 CTGGGTAAAACATCGTGTCCC 58.919 52.381 0.00 0.00 0.00 4.46
3102 3567 2.081462 CCTGGGTAAAACATCGTGTCC 58.919 52.381 0.00 0.00 0.00 4.02
3103 3568 2.774687 ACCTGGGTAAAACATCGTGTC 58.225 47.619 0.00 0.00 0.00 3.67
3105 3570 2.158841 CGAACCTGGGTAAAACATCGTG 59.841 50.000 0.00 0.00 0.00 4.35
3106 3571 2.419667 CGAACCTGGGTAAAACATCGT 58.580 47.619 0.00 0.00 0.00 3.73
3107 3572 1.735571 CCGAACCTGGGTAAAACATCG 59.264 52.381 0.00 0.00 0.00 3.84
3108 3573 2.089201 CCCGAACCTGGGTAAAACATC 58.911 52.381 0.00 0.00 44.76 3.06
3110 3575 3.729726 CCCGAACCTGGGTAAAACA 57.270 52.632 0.00 0.00 44.76 2.83
3118 3583 3.330720 AAGAGGGCCCGAACCTGG 61.331 66.667 18.44 0.00 38.79 4.45
3119 3584 1.915078 ATCAAGAGGGCCCGAACCTG 61.915 60.000 18.44 12.14 38.79 4.00
3122 3587 1.452108 CCATCAAGAGGGCCCGAAC 60.452 63.158 18.44 12.45 0.00 3.95
3123 3588 1.615124 TCCATCAAGAGGGCCCGAA 60.615 57.895 18.44 1.01 31.15 4.30
3124 3589 2.040442 TCCATCAAGAGGGCCCGA 59.960 61.111 18.44 8.04 31.15 5.14
3125 3590 2.507944 CTCCATCAAGAGGGCCCG 59.492 66.667 18.44 1.05 31.15 6.13
3131 3596 5.047943 CGTAGGGTATTACCTCCATCAAGAG 60.048 48.000 12.54 0.00 42.09 2.85
3132 3597 4.831155 CGTAGGGTATTACCTCCATCAAGA 59.169 45.833 12.54 0.00 42.09 3.02
3133 3598 4.587684 ACGTAGGGTATTACCTCCATCAAG 59.412 45.833 12.54 0.49 42.09 3.02
3134 3599 4.549668 ACGTAGGGTATTACCTCCATCAA 58.450 43.478 12.54 0.00 42.09 2.57
3135 3600 4.147321 GACGTAGGGTATTACCTCCATCA 58.853 47.826 12.54 0.00 42.09 3.07
3136 3601 3.509184 GGACGTAGGGTATTACCTCCATC 59.491 52.174 12.54 4.90 42.09 3.51
3138 3603 2.515429 AGGACGTAGGGTATTACCTCCA 59.485 50.000 16.39 0.80 42.09 3.86
3139 3604 2.889678 CAGGACGTAGGGTATTACCTCC 59.110 54.545 12.54 10.66 42.09 4.30
3140 3605 2.295629 GCAGGACGTAGGGTATTACCTC 59.704 54.545 12.54 2.11 42.09 3.85
3141 3606 2.091444 AGCAGGACGTAGGGTATTACCT 60.091 50.000 12.54 2.07 44.75 3.08
3144 3609 2.696707 CCAAGCAGGACGTAGGGTATTA 59.303 50.000 0.00 0.00 41.22 0.98
3146 3611 1.120530 CCAAGCAGGACGTAGGGTAT 58.879 55.000 0.00 0.00 41.22 2.73
3147 3612 0.251922 ACCAAGCAGGACGTAGGGTA 60.252 55.000 1.83 0.00 41.22 3.69
3148 3613 1.125711 AACCAAGCAGGACGTAGGGT 61.126 55.000 1.83 0.00 41.22 4.34
3149 3614 0.036306 AAACCAAGCAGGACGTAGGG 59.964 55.000 1.83 0.00 41.22 3.53
3150 3615 2.754946 TAAACCAAGCAGGACGTAGG 57.245 50.000 1.83 0.00 41.22 3.18
3151 3616 6.046593 TCAATATAAACCAAGCAGGACGTAG 58.953 40.000 1.83 0.00 41.22 3.51
3153 3618 4.839121 TCAATATAAACCAAGCAGGACGT 58.161 39.130 1.83 0.00 41.22 4.34
3154 3619 5.527214 TCATCAATATAAACCAAGCAGGACG 59.473 40.000 1.83 0.00 41.22 4.79
3155 3620 6.942532 TCATCAATATAAACCAAGCAGGAC 57.057 37.500 1.83 0.00 41.22 3.85
3157 3622 8.017373 CGTATTCATCAATATAAACCAAGCAGG 58.983 37.037 0.00 0.00 45.67 4.85
3158 3623 8.773645 TCGTATTCATCAATATAAACCAAGCAG 58.226 33.333 0.00 0.00 0.00 4.24
3174 3639 9.731819 TCAACTCTTGTAATACTCGTATTCATC 57.268 33.333 5.64 0.83 37.07 2.92
3177 3642 9.953697 AGATCAACTCTTGTAATACTCGTATTC 57.046 33.333 5.64 0.60 37.07 1.75
3181 3646 7.338703 TGGTAGATCAACTCTTGTAATACTCGT 59.661 37.037 0.00 0.00 35.28 4.18
3183 3648 7.644551 CGTGGTAGATCAACTCTTGTAATACTC 59.355 40.741 0.00 0.00 35.28 2.59
3184 3649 7.338703 TCGTGGTAGATCAACTCTTGTAATACT 59.661 37.037 0.00 0.00 35.28 2.12
3190 3703 4.079970 TCTCGTGGTAGATCAACTCTTGT 58.920 43.478 0.00 0.00 35.28 3.16
3204 3717 7.908458 GGTTTAGCCATTACGATCTCGTGGT 62.908 48.000 15.08 6.61 44.51 4.16
3205 3718 5.554477 GGTTTAGCCATTACGATCTCGTGG 61.554 50.000 15.08 9.07 44.51 4.94
3206 3719 3.489785 GGTTTAGCCATTACGATCTCGTG 59.510 47.826 15.08 0.00 44.51 4.35
3208 3721 3.057734 GGGTTTAGCCATTACGATCTCG 58.942 50.000 0.00 0.00 41.74 4.04
3209 3722 4.338379 AGGGTTTAGCCATTACGATCTC 57.662 45.455 0.26 0.00 39.65 2.75
3210 3723 5.145564 TCTAGGGTTTAGCCATTACGATCT 58.854 41.667 0.26 0.00 39.65 2.75
3211 3724 5.464030 TCTAGGGTTTAGCCATTACGATC 57.536 43.478 0.26 0.00 39.65 3.69
3212 3725 5.881923 TTCTAGGGTTTAGCCATTACGAT 57.118 39.130 0.26 0.00 39.65 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.