Multiple sequence alignment - TraesCS4A01G243600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G243600 chr4A 100.000 2222 0 0 1 2222 553534056 553536277 0.000000e+00 4104
1 TraesCS4A01G243600 chr4A 94.337 1554 71 8 1 1539 603339050 603340601 0.000000e+00 2366
2 TraesCS4A01G243600 chr5B 95.686 1553 53 2 1 1539 492816948 492815396 0.000000e+00 2484
3 TraesCS4A01G243600 chr1A 94.137 1552 77 1 1 1538 22341205 22342756 0.000000e+00 2350
4 TraesCS4A01G243600 chr1A 93.238 1183 56 3 374 1540 446244146 446245320 0.000000e+00 1720
5 TraesCS4A01G243600 chr6A 94.700 1415 57 3 1 1398 224099777 224098364 0.000000e+00 2182
6 TraesCS4A01G243600 chr6A 94.073 1181 56 1 374 1540 531392130 531390950 0.000000e+00 1781
7 TraesCS4A01G243600 chr6A 97.354 378 10 0 1 378 472969181 472969558 0.000000e+00 643
8 TraesCS4A01G243600 chr6A 97.090 378 11 0 1 378 595511827 595511450 2.410000e-179 638
9 TraesCS4A01G243600 chr3A 94.496 1181 49 3 374 1538 11605560 11604380 0.000000e+00 1807
10 TraesCS4A01G243600 chr3A 94.327 1181 51 3 374 1538 11598672 11597492 0.000000e+00 1796
11 TraesCS4A01G243600 chr3A 94.162 1182 55 1 374 1541 459622888 459621707 0.000000e+00 1788
12 TraesCS4A01G243600 chr3A 93.390 1180 64 1 374 1539 27581332 27582511 0.000000e+00 1735
13 TraesCS4A01G243600 chr4B 94.242 1181 54 1 374 1540 604143343 604144523 0.000000e+00 1792
14 TraesCS4A01G243600 chr4B 94.172 1184 54 2 374 1542 85985854 85987037 0.000000e+00 1790
15 TraesCS4A01G243600 chr5A 94.063 1179 56 2 374 1539 601069262 601070439 0.000000e+00 1777
16 TraesCS4A01G243600 chr5A 93.349 842 42 1 374 1201 1241125 1241966 0.000000e+00 1232
17 TraesCS4A01G243600 chr7A 93.739 1182 59 8 374 1540 71221469 71222650 0.000000e+00 1759
18 TraesCS4A01G243600 chr7A 96.834 379 11 1 1 378 609346600 609346978 1.120000e-177 632
19 TraesCS4A01G243600 chr2B 93.390 1180 62 2 374 1539 721723515 721724692 0.000000e+00 1733
20 TraesCS4A01G243600 chr2A 93.426 578 22 2 1 564 38289405 38289980 0.000000e+00 843
21 TraesCS4A01G243600 chr2A 96.825 378 12 0 1 378 661123949 661123572 1.120000e-177 632


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G243600 chr4A 553534056 553536277 2221 False 4104 4104 100.000 1 2222 1 chr4A.!!$F1 2221
1 TraesCS4A01G243600 chr4A 603339050 603340601 1551 False 2366 2366 94.337 1 1539 1 chr4A.!!$F2 1538
2 TraesCS4A01G243600 chr5B 492815396 492816948 1552 True 2484 2484 95.686 1 1539 1 chr5B.!!$R1 1538
3 TraesCS4A01G243600 chr1A 22341205 22342756 1551 False 2350 2350 94.137 1 1538 1 chr1A.!!$F1 1537
4 TraesCS4A01G243600 chr1A 446244146 446245320 1174 False 1720 1720 93.238 374 1540 1 chr1A.!!$F2 1166
5 TraesCS4A01G243600 chr6A 224098364 224099777 1413 True 2182 2182 94.700 1 1398 1 chr6A.!!$R1 1397
6 TraesCS4A01G243600 chr6A 531390950 531392130 1180 True 1781 1781 94.073 374 1540 1 chr6A.!!$R2 1166
7 TraesCS4A01G243600 chr3A 11604380 11605560 1180 True 1807 1807 94.496 374 1538 1 chr3A.!!$R2 1164
8 TraesCS4A01G243600 chr3A 11597492 11598672 1180 True 1796 1796 94.327 374 1538 1 chr3A.!!$R1 1164
9 TraesCS4A01G243600 chr3A 459621707 459622888 1181 True 1788 1788 94.162 374 1541 1 chr3A.!!$R3 1167
10 TraesCS4A01G243600 chr3A 27581332 27582511 1179 False 1735 1735 93.390 374 1539 1 chr3A.!!$F1 1165
11 TraesCS4A01G243600 chr4B 604143343 604144523 1180 False 1792 1792 94.242 374 1540 1 chr4B.!!$F2 1166
12 TraesCS4A01G243600 chr4B 85985854 85987037 1183 False 1790 1790 94.172 374 1542 1 chr4B.!!$F1 1168
13 TraesCS4A01G243600 chr5A 601069262 601070439 1177 False 1777 1777 94.063 374 1539 1 chr5A.!!$F2 1165
14 TraesCS4A01G243600 chr5A 1241125 1241966 841 False 1232 1232 93.349 374 1201 1 chr5A.!!$F1 827
15 TraesCS4A01G243600 chr7A 71221469 71222650 1181 False 1759 1759 93.739 374 1540 1 chr7A.!!$F1 1166
16 TraesCS4A01G243600 chr2B 721723515 721724692 1177 False 1733 1733 93.390 374 1539 1 chr2B.!!$F1 1165
17 TraesCS4A01G243600 chr2A 38289405 38289980 575 False 843 843 93.426 1 564 1 chr2A.!!$F1 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
667 687 3.181469 GGATGGCGTTACCTCTTGATACA 60.181 47.826 0.0 0.0 40.22 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2141 2165 0.106918 TGTGGTTTTCTGCTCGGGTT 60.107 50.0 0.0 0.0 0.0 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
199 201 5.179742 CCAACAATTTGCAACATGCTACAAT 59.820 36.000 0.00 0.00 45.31 2.71
544 564 4.569676 TCCAACCTATCCCTGGAGATAA 57.430 45.455 0.00 0.00 34.26 1.75
547 567 4.846367 CCAACCTATCCCTGGAGATAATGA 59.154 45.833 0.00 0.00 31.38 2.57
609 629 7.094975 GCAACATCATAGGTAAAACACACACTA 60.095 37.037 0.00 0.00 0.00 2.74
667 687 3.181469 GGATGGCGTTACCTCTTGATACA 60.181 47.826 0.00 0.00 40.22 2.29
1092 1113 2.093658 GGCCTCCAAACAGAAGACGATA 60.094 50.000 0.00 0.00 0.00 2.92
1115 1136 2.735444 CGTCGATAGCATGTGTGTTCCT 60.735 50.000 0.00 0.00 0.00 3.36
1445 1469 8.570068 AAGGCTAACCGTTAGATTGATTTTAA 57.430 30.769 20.39 0.00 42.76 1.52
1543 1567 9.871238 ATTGTTTAATAGTAGTATAGATGGCGG 57.129 33.333 0.00 0.00 0.00 6.13
1544 1568 8.413309 TGTTTAATAGTAGTATAGATGGCGGT 57.587 34.615 0.00 0.00 0.00 5.68
1545 1569 8.301720 TGTTTAATAGTAGTATAGATGGCGGTG 58.698 37.037 0.00 0.00 0.00 4.94
1546 1570 8.302438 GTTTAATAGTAGTATAGATGGCGGTGT 58.698 37.037 0.00 0.00 0.00 4.16
1547 1571 6.912951 AATAGTAGTATAGATGGCGGTGTT 57.087 37.500 0.00 0.00 0.00 3.32
1548 1572 4.585955 AGTAGTATAGATGGCGGTGTTG 57.414 45.455 0.00 0.00 0.00 3.33
1549 1573 3.958798 AGTAGTATAGATGGCGGTGTTGT 59.041 43.478 0.00 0.00 0.00 3.32
1550 1574 3.454371 AGTATAGATGGCGGTGTTGTC 57.546 47.619 0.00 0.00 0.00 3.18
1551 1575 2.124903 GTATAGATGGCGGTGTTGTCG 58.875 52.381 0.00 0.00 0.00 4.35
1552 1576 0.821517 ATAGATGGCGGTGTTGTCGA 59.178 50.000 0.00 0.00 0.00 4.20
1553 1577 0.821517 TAGATGGCGGTGTTGTCGAT 59.178 50.000 0.00 0.00 0.00 3.59
1554 1578 0.740868 AGATGGCGGTGTTGTCGATG 60.741 55.000 0.00 0.00 0.00 3.84
1555 1579 0.739462 GATGGCGGTGTTGTCGATGA 60.739 55.000 0.00 0.00 0.00 2.92
1556 1580 0.321210 ATGGCGGTGTTGTCGATGAA 60.321 50.000 0.00 0.00 0.00 2.57
1557 1581 0.533085 TGGCGGTGTTGTCGATGAAA 60.533 50.000 0.00 0.00 0.00 2.69
1558 1582 0.165944 GGCGGTGTTGTCGATGAAAG 59.834 55.000 0.00 0.00 0.00 2.62
1559 1583 0.165944 GCGGTGTTGTCGATGAAAGG 59.834 55.000 0.00 0.00 0.00 3.11
1560 1584 1.790755 CGGTGTTGTCGATGAAAGGA 58.209 50.000 0.00 0.00 0.00 3.36
1561 1585 1.459592 CGGTGTTGTCGATGAAAGGAC 59.540 52.381 0.00 0.00 0.00 3.85
1562 1586 2.489971 GGTGTTGTCGATGAAAGGACA 58.510 47.619 0.00 0.00 41.13 4.02
1567 1591 3.762407 TGTCGATGAAAGGACAAAGGA 57.238 42.857 0.00 0.00 40.01 3.36
1568 1592 4.286297 TGTCGATGAAAGGACAAAGGAT 57.714 40.909 0.00 0.00 40.01 3.24
1569 1593 4.651778 TGTCGATGAAAGGACAAAGGATT 58.348 39.130 0.00 0.00 40.01 3.01
1570 1594 4.455533 TGTCGATGAAAGGACAAAGGATTG 59.544 41.667 0.00 0.00 40.01 2.67
1584 1608 6.956299 CAAAGGATTGTTATGCAAAGGAAG 57.044 37.500 0.00 0.00 40.91 3.46
1585 1609 4.725790 AGGATTGTTATGCAAAGGAAGC 57.274 40.909 0.00 0.00 40.91 3.86
1586 1610 4.347607 AGGATTGTTATGCAAAGGAAGCT 58.652 39.130 0.00 0.00 40.91 3.74
1587 1611 5.509498 AGGATTGTTATGCAAAGGAAGCTA 58.491 37.500 0.00 0.00 40.91 3.32
1588 1612 5.591877 AGGATTGTTATGCAAAGGAAGCTAG 59.408 40.000 0.00 0.00 40.91 3.42
1589 1613 5.590259 GGATTGTTATGCAAAGGAAGCTAGA 59.410 40.000 0.00 0.00 40.91 2.43
1590 1614 6.095440 GGATTGTTATGCAAAGGAAGCTAGAA 59.905 38.462 0.00 0.00 40.91 2.10
1591 1615 7.201857 GGATTGTTATGCAAAGGAAGCTAGAAT 60.202 37.037 0.00 0.00 40.91 2.40
1592 1616 6.441093 TGTTATGCAAAGGAAGCTAGAATG 57.559 37.500 0.00 0.00 0.00 2.67
1593 1617 5.945784 TGTTATGCAAAGGAAGCTAGAATGT 59.054 36.000 0.00 0.00 0.00 2.71
1594 1618 6.434028 TGTTATGCAAAGGAAGCTAGAATGTT 59.566 34.615 0.00 0.00 0.00 2.71
1595 1619 5.573337 ATGCAAAGGAAGCTAGAATGTTC 57.427 39.130 0.00 0.00 0.00 3.18
1596 1620 4.655963 TGCAAAGGAAGCTAGAATGTTCT 58.344 39.130 0.00 0.45 41.24 3.01
1597 1621 4.456911 TGCAAAGGAAGCTAGAATGTTCTG 59.543 41.667 5.55 0.00 38.19 3.02
1598 1622 4.457257 GCAAAGGAAGCTAGAATGTTCTGT 59.543 41.667 5.55 0.00 38.19 3.41
1599 1623 5.048434 GCAAAGGAAGCTAGAATGTTCTGTT 60.048 40.000 5.55 0.00 38.19 3.16
1600 1624 6.376978 CAAAGGAAGCTAGAATGTTCTGTTG 58.623 40.000 5.55 0.00 38.19 3.33
1601 1625 4.006319 AGGAAGCTAGAATGTTCTGTTGC 58.994 43.478 5.55 7.17 38.19 4.17
1602 1626 3.127721 GGAAGCTAGAATGTTCTGTTGCC 59.872 47.826 5.55 0.00 38.19 4.52
1603 1627 2.350522 AGCTAGAATGTTCTGTTGCCG 58.649 47.619 5.55 0.00 38.19 5.69
1604 1628 2.076863 GCTAGAATGTTCTGTTGCCGT 58.923 47.619 5.55 0.00 38.19 5.68
1605 1629 2.484264 GCTAGAATGTTCTGTTGCCGTT 59.516 45.455 5.55 0.00 38.19 4.44
1606 1630 3.058224 GCTAGAATGTTCTGTTGCCGTTT 60.058 43.478 5.55 0.00 38.19 3.60
1607 1631 3.354089 AGAATGTTCTGTTGCCGTTTG 57.646 42.857 0.00 0.00 35.89 2.93
1608 1632 2.034558 AGAATGTTCTGTTGCCGTTTGG 59.965 45.455 0.00 0.00 35.89 3.28
1609 1633 0.673437 ATGTTCTGTTGCCGTTTGGG 59.327 50.000 0.00 0.00 39.58 4.12
1610 1634 1.362355 GTTCTGTTGCCGTTTGGGG 59.638 57.895 0.00 0.00 35.78 4.96
1611 1635 1.830408 TTCTGTTGCCGTTTGGGGG 60.830 57.895 0.00 0.00 35.78 5.40
1612 1636 2.520741 CTGTTGCCGTTTGGGGGT 60.521 61.111 0.00 0.00 35.78 4.95
1613 1637 2.835431 TGTTGCCGTTTGGGGGTG 60.835 61.111 0.00 0.00 35.78 4.61
1614 1638 2.835895 GTTGCCGTTTGGGGGTGT 60.836 61.111 0.00 0.00 35.78 4.16
1615 1639 2.042843 TTGCCGTTTGGGGGTGTT 60.043 55.556 0.00 0.00 35.78 3.32
1616 1640 2.128507 TTGCCGTTTGGGGGTGTTC 61.129 57.895 0.00 0.00 35.78 3.18
1617 1641 3.299977 GCCGTTTGGGGGTGTTCC 61.300 66.667 0.00 0.00 35.78 3.62
1618 1642 2.196229 CCGTTTGGGGGTGTTCCA 59.804 61.111 0.00 0.00 37.22 3.53
1619 1643 1.228737 CCGTTTGGGGGTGTTCCAT 60.229 57.895 0.00 0.00 37.22 3.41
1620 1644 0.830023 CCGTTTGGGGGTGTTCCATT 60.830 55.000 0.00 0.00 37.22 3.16
1621 1645 0.601057 CGTTTGGGGGTGTTCCATTC 59.399 55.000 0.00 0.00 37.22 2.67
1622 1646 1.821666 CGTTTGGGGGTGTTCCATTCT 60.822 52.381 0.00 0.00 37.22 2.40
1623 1647 2.325484 GTTTGGGGGTGTTCCATTCTT 58.675 47.619 0.00 0.00 37.22 2.52
1624 1648 2.299013 GTTTGGGGGTGTTCCATTCTTC 59.701 50.000 0.00 0.00 37.22 2.87
1625 1649 0.037590 TGGGGGTGTTCCATTCTTCG 59.962 55.000 0.00 0.00 37.22 3.79
1626 1650 1.313091 GGGGGTGTTCCATTCTTCGC 61.313 60.000 0.00 0.00 37.22 4.70
1627 1651 1.313091 GGGGTGTTCCATTCTTCGCC 61.313 60.000 0.00 0.00 37.22 5.54
1628 1652 0.322546 GGGTGTTCCATTCTTCGCCT 60.323 55.000 0.00 0.00 35.00 5.52
1629 1653 1.087501 GGTGTTCCATTCTTCGCCTC 58.912 55.000 0.00 0.00 0.00 4.70
1630 1654 1.339151 GGTGTTCCATTCTTCGCCTCT 60.339 52.381 0.00 0.00 0.00 3.69
1631 1655 2.093658 GGTGTTCCATTCTTCGCCTCTA 60.094 50.000 0.00 0.00 0.00 2.43
1632 1656 3.190874 GTGTTCCATTCTTCGCCTCTAG 58.809 50.000 0.00 0.00 0.00 2.43
1633 1657 2.205911 GTTCCATTCTTCGCCTCTAGC 58.794 52.381 0.00 0.00 38.52 3.42
1634 1658 1.485124 TCCATTCTTCGCCTCTAGCA 58.515 50.000 0.00 0.00 44.04 3.49
1635 1659 2.042464 TCCATTCTTCGCCTCTAGCAT 58.958 47.619 0.00 0.00 44.04 3.79
1636 1660 2.435805 TCCATTCTTCGCCTCTAGCATT 59.564 45.455 0.00 0.00 44.04 3.56
1637 1661 3.118261 TCCATTCTTCGCCTCTAGCATTT 60.118 43.478 0.00 0.00 44.04 2.32
1638 1662 3.629398 CCATTCTTCGCCTCTAGCATTTT 59.371 43.478 0.00 0.00 44.04 1.82
1639 1663 4.260948 CCATTCTTCGCCTCTAGCATTTTC 60.261 45.833 0.00 0.00 44.04 2.29
1640 1664 3.895232 TCTTCGCCTCTAGCATTTTCT 57.105 42.857 0.00 0.00 44.04 2.52
1641 1665 4.207891 TCTTCGCCTCTAGCATTTTCTT 57.792 40.909 0.00 0.00 44.04 2.52
1642 1666 4.579869 TCTTCGCCTCTAGCATTTTCTTT 58.420 39.130 0.00 0.00 44.04 2.52
1643 1667 5.003804 TCTTCGCCTCTAGCATTTTCTTTT 58.996 37.500 0.00 0.00 44.04 2.27
1644 1668 4.685169 TCGCCTCTAGCATTTTCTTTTG 57.315 40.909 0.00 0.00 44.04 2.44
1645 1669 4.072131 TCGCCTCTAGCATTTTCTTTTGT 58.928 39.130 0.00 0.00 44.04 2.83
1646 1670 4.518970 TCGCCTCTAGCATTTTCTTTTGTT 59.481 37.500 0.00 0.00 44.04 2.83
1647 1671 5.009610 TCGCCTCTAGCATTTTCTTTTGTTT 59.990 36.000 0.00 0.00 44.04 2.83
1648 1672 5.117592 CGCCTCTAGCATTTTCTTTTGTTTG 59.882 40.000 0.00 0.00 44.04 2.93
1649 1673 5.406477 GCCTCTAGCATTTTCTTTTGTTTGG 59.594 40.000 0.00 0.00 42.97 3.28
1650 1674 6.515832 CCTCTAGCATTTTCTTTTGTTTGGT 58.484 36.000 0.00 0.00 0.00 3.67
1651 1675 6.986231 CCTCTAGCATTTTCTTTTGTTTGGTT 59.014 34.615 0.00 0.00 0.00 3.67
1652 1676 7.495606 CCTCTAGCATTTTCTTTTGTTTGGTTT 59.504 33.333 0.00 0.00 0.00 3.27
1653 1677 8.419076 TCTAGCATTTTCTTTTGTTTGGTTTC 57.581 30.769 0.00 0.00 0.00 2.78
1654 1678 8.037758 TCTAGCATTTTCTTTTGTTTGGTTTCA 58.962 29.630 0.00 0.00 0.00 2.69
1655 1679 7.628769 AGCATTTTCTTTTGTTTGGTTTCAT 57.371 28.000 0.00 0.00 0.00 2.57
1656 1680 8.054152 AGCATTTTCTTTTGTTTGGTTTCATT 57.946 26.923 0.00 0.00 0.00 2.57
1657 1681 8.183536 AGCATTTTCTTTTGTTTGGTTTCATTC 58.816 29.630 0.00 0.00 0.00 2.67
1658 1682 7.164008 GCATTTTCTTTTGTTTGGTTTCATTCG 59.836 33.333 0.00 0.00 0.00 3.34
1659 1683 6.654793 TTTCTTTTGTTTGGTTTCATTCGG 57.345 33.333 0.00 0.00 0.00 4.30
1660 1684 5.331876 TCTTTTGTTTGGTTTCATTCGGT 57.668 34.783 0.00 0.00 0.00 4.69
1661 1685 5.725362 TCTTTTGTTTGGTTTCATTCGGTT 58.275 33.333 0.00 0.00 0.00 4.44
1662 1686 6.166982 TCTTTTGTTTGGTTTCATTCGGTTT 58.833 32.000 0.00 0.00 0.00 3.27
1663 1687 5.786401 TTTGTTTGGTTTCATTCGGTTTG 57.214 34.783 0.00 0.00 0.00 2.93
1664 1688 4.457834 TGTTTGGTTTCATTCGGTTTGT 57.542 36.364 0.00 0.00 0.00 2.83
1665 1689 4.822026 TGTTTGGTTTCATTCGGTTTGTT 58.178 34.783 0.00 0.00 0.00 2.83
1666 1690 5.238583 TGTTTGGTTTCATTCGGTTTGTTT 58.761 33.333 0.00 0.00 0.00 2.83
1667 1691 5.348997 TGTTTGGTTTCATTCGGTTTGTTTC 59.651 36.000 0.00 0.00 0.00 2.78
1668 1692 3.696898 TGGTTTCATTCGGTTTGTTTCG 58.303 40.909 0.00 0.00 0.00 3.46
1669 1693 3.128938 TGGTTTCATTCGGTTTGTTTCGT 59.871 39.130 0.00 0.00 0.00 3.85
1670 1694 3.484285 GGTTTCATTCGGTTTGTTTCGTG 59.516 43.478 0.00 0.00 0.00 4.35
1671 1695 4.099824 GTTTCATTCGGTTTGTTTCGTGT 58.900 39.130 0.00 0.00 0.00 4.49
1672 1696 4.358494 TTCATTCGGTTTGTTTCGTGTT 57.642 36.364 0.00 0.00 0.00 3.32
1673 1697 4.358494 TCATTCGGTTTGTTTCGTGTTT 57.642 36.364 0.00 0.00 0.00 2.83
1674 1698 4.734917 TCATTCGGTTTGTTTCGTGTTTT 58.265 34.783 0.00 0.00 0.00 2.43
1675 1699 5.162075 TCATTCGGTTTGTTTCGTGTTTTT 58.838 33.333 0.00 0.00 0.00 1.94
1851 1875 8.859517 TTGGAACACTTTAAAATTTAGGAACG 57.140 30.769 0.00 0.00 39.29 3.95
1852 1876 7.998580 TGGAACACTTTAAAATTTAGGAACGT 58.001 30.769 0.00 0.00 0.00 3.99
1853 1877 8.468399 TGGAACACTTTAAAATTTAGGAACGTT 58.532 29.630 0.00 0.00 0.00 3.99
1854 1878 9.304731 GGAACACTTTAAAATTTAGGAACGTTT 57.695 29.630 0.46 0.00 0.00 3.60
1871 1895 7.977293 AGGAACGTTTTATAAATTTGGGTATGC 59.023 33.333 0.46 0.00 0.00 3.14
1872 1896 7.760340 GGAACGTTTTATAAATTTGGGTATGCA 59.240 33.333 0.46 0.00 0.00 3.96
1873 1897 8.468720 AACGTTTTATAAATTTGGGTATGCAC 57.531 30.769 0.00 0.00 0.00 4.57
1874 1898 7.832769 ACGTTTTATAAATTTGGGTATGCACT 58.167 30.769 0.00 0.00 0.00 4.40
1875 1899 8.308207 ACGTTTTATAAATTTGGGTATGCACTT 58.692 29.630 0.00 0.00 0.00 3.16
1876 1900 9.145865 CGTTTTATAAATTTGGGTATGCACTTT 57.854 29.630 0.00 0.00 0.00 2.66
1878 1902 9.660180 TTTTATAAATTTGGGTATGCACTTTCC 57.340 29.630 0.00 0.00 0.00 3.13
1879 1903 6.865834 ATAAATTTGGGTATGCACTTTCCA 57.134 33.333 0.00 0.00 0.00 3.53
1880 1904 5.760484 AAATTTGGGTATGCACTTTCCAT 57.240 34.783 0.00 0.00 0.00 3.41
1881 1905 6.865834 AAATTTGGGTATGCACTTTCCATA 57.134 33.333 0.00 0.00 0.00 2.74
1882 1906 6.865834 AATTTGGGTATGCACTTTCCATAA 57.134 33.333 0.00 0.00 0.00 1.90
1883 1907 6.865834 ATTTGGGTATGCACTTTCCATAAA 57.134 33.333 0.00 0.00 0.00 1.40
1884 1908 6.672266 TTTGGGTATGCACTTTCCATAAAA 57.328 33.333 0.00 0.00 0.00 1.52
1885 1909 6.865834 TTGGGTATGCACTTTCCATAAAAT 57.134 33.333 0.00 0.00 0.00 1.82
1886 1910 6.219417 TGGGTATGCACTTTCCATAAAATG 57.781 37.500 0.00 0.00 0.00 2.32
1887 1911 5.719085 TGGGTATGCACTTTCCATAAAATGT 59.281 36.000 0.00 0.00 0.00 2.71
1888 1912 6.127479 TGGGTATGCACTTTCCATAAAATGTC 60.127 38.462 0.00 0.00 0.00 3.06
1889 1913 6.273071 GGTATGCACTTTCCATAAAATGTCC 58.727 40.000 0.00 0.00 0.00 4.02
1890 1914 5.999205 ATGCACTTTCCATAAAATGTCCA 57.001 34.783 0.00 0.00 0.00 4.02
1891 1915 5.999205 TGCACTTTCCATAAAATGTCCAT 57.001 34.783 0.00 0.00 0.00 3.41
1892 1916 5.722263 TGCACTTTCCATAAAATGTCCATG 58.278 37.500 0.00 0.00 0.00 3.66
1893 1917 4.567959 GCACTTTCCATAAAATGTCCATGC 59.432 41.667 0.00 0.00 0.00 4.06
1894 1918 4.799949 CACTTTCCATAAAATGTCCATGCG 59.200 41.667 0.00 0.00 0.00 4.73
1895 1919 3.435105 TTCCATAAAATGTCCATGCGC 57.565 42.857 0.00 0.00 0.00 6.09
1896 1920 1.680735 TCCATAAAATGTCCATGCGCC 59.319 47.619 4.18 0.00 0.00 6.53
1897 1921 1.682854 CCATAAAATGTCCATGCGCCT 59.317 47.619 4.18 0.00 0.00 5.52
1898 1922 2.101249 CCATAAAATGTCCATGCGCCTT 59.899 45.455 4.18 0.00 0.00 4.35
1899 1923 3.430651 CCATAAAATGTCCATGCGCCTTT 60.431 43.478 4.18 0.00 0.00 3.11
1900 1924 2.837532 AAAATGTCCATGCGCCTTTT 57.162 40.000 4.18 0.00 0.00 2.27
1901 1925 3.951775 AAAATGTCCATGCGCCTTTTA 57.048 38.095 4.18 0.00 0.00 1.52
1902 1926 3.951775 AAATGTCCATGCGCCTTTTAA 57.048 38.095 4.18 0.00 0.00 1.52
1903 1927 3.951775 AATGTCCATGCGCCTTTTAAA 57.048 38.095 4.18 0.00 0.00 1.52
1904 1928 4.470334 AATGTCCATGCGCCTTTTAAAT 57.530 36.364 4.18 0.00 0.00 1.40
1905 1929 3.229276 TGTCCATGCGCCTTTTAAATG 57.771 42.857 4.18 0.00 0.00 2.32
1906 1930 2.560542 TGTCCATGCGCCTTTTAAATGT 59.439 40.909 4.18 0.00 0.00 2.71
1907 1931 3.006323 TGTCCATGCGCCTTTTAAATGTT 59.994 39.130 4.18 0.00 0.00 2.71
1908 1932 3.993736 GTCCATGCGCCTTTTAAATGTTT 59.006 39.130 4.18 0.00 0.00 2.83
1909 1933 4.450757 GTCCATGCGCCTTTTAAATGTTTT 59.549 37.500 4.18 0.00 0.00 2.43
1910 1934 4.688413 TCCATGCGCCTTTTAAATGTTTTC 59.312 37.500 4.18 0.00 0.00 2.29
1911 1935 4.142924 CCATGCGCCTTTTAAATGTTTTCC 60.143 41.667 4.18 0.00 0.00 3.13
1912 1936 4.060038 TGCGCCTTTTAAATGTTTTCCA 57.940 36.364 4.18 0.00 0.00 3.53
1913 1937 3.804873 TGCGCCTTTTAAATGTTTTCCAC 59.195 39.130 4.18 0.00 0.00 4.02
1914 1938 3.185594 GCGCCTTTTAAATGTTTTCCACC 59.814 43.478 0.00 0.00 0.00 4.61
1915 1939 3.743911 CGCCTTTTAAATGTTTTCCACCC 59.256 43.478 0.00 0.00 0.00 4.61
1916 1940 4.709250 GCCTTTTAAATGTTTTCCACCCA 58.291 39.130 0.00 0.00 0.00 4.51
1917 1941 5.126779 GCCTTTTAAATGTTTTCCACCCAA 58.873 37.500 0.00 0.00 0.00 4.12
1918 1942 5.767665 GCCTTTTAAATGTTTTCCACCCAAT 59.232 36.000 0.00 0.00 0.00 3.16
1919 1943 6.264292 GCCTTTTAAATGTTTTCCACCCAATT 59.736 34.615 0.00 0.00 0.00 2.32
1920 1944 7.521423 GCCTTTTAAATGTTTTCCACCCAATTC 60.521 37.037 0.00 0.00 0.00 2.17
1921 1945 7.040755 CCTTTTAAATGTTTTCCACCCAATTCC 60.041 37.037 0.00 0.00 0.00 3.01
1922 1946 6.500589 TTAAATGTTTTCCACCCAATTCCA 57.499 33.333 0.00 0.00 0.00 3.53
1923 1947 5.581350 AAATGTTTTCCACCCAATTCCAT 57.419 34.783 0.00 0.00 0.00 3.41
1924 1948 6.694445 AAATGTTTTCCACCCAATTCCATA 57.306 33.333 0.00 0.00 0.00 2.74
1925 1949 6.694445 AATGTTTTCCACCCAATTCCATAA 57.306 33.333 0.00 0.00 0.00 1.90
1926 1950 6.694445 ATGTTTTCCACCCAATTCCATAAA 57.306 33.333 0.00 0.00 0.00 1.40
1927 1951 6.694445 TGTTTTCCACCCAATTCCATAAAT 57.306 33.333 0.00 0.00 0.00 1.40
1928 1952 7.084268 TGTTTTCCACCCAATTCCATAAATT 57.916 32.000 0.00 0.00 38.11 1.82
1929 1953 7.521669 TGTTTTCCACCCAATTCCATAAATTT 58.478 30.769 0.00 0.00 35.32 1.82
1930 1954 7.663493 TGTTTTCCACCCAATTCCATAAATTTC 59.337 33.333 0.00 0.00 35.32 2.17
1931 1955 7.566658 TTTCCACCCAATTCCATAAATTTCT 57.433 32.000 0.00 0.00 35.32 2.52
1932 1956 7.566658 TTCCACCCAATTCCATAAATTTCTT 57.433 32.000 0.00 0.00 35.32 2.52
1933 1957 7.181569 TCCACCCAATTCCATAAATTTCTTC 57.818 36.000 0.00 0.00 35.32 2.87
1934 1958 6.728164 TCCACCCAATTCCATAAATTTCTTCA 59.272 34.615 0.00 0.00 35.32 3.02
1935 1959 6.818142 CCACCCAATTCCATAAATTTCTTCAC 59.182 38.462 0.00 0.00 35.32 3.18
1936 1960 7.385267 CACCCAATTCCATAAATTTCTTCACA 58.615 34.615 0.00 0.00 35.32 3.58
1937 1961 8.042515 CACCCAATTCCATAAATTTCTTCACAT 58.957 33.333 0.00 0.00 35.32 3.21
1938 1962 9.265862 ACCCAATTCCATAAATTTCTTCACATA 57.734 29.630 0.00 0.00 35.32 2.29
1973 1997 8.773404 ATCAGTTACACTTATTTAGAAAGCGT 57.227 30.769 0.00 0.00 0.00 5.07
1974 1998 8.597662 TCAGTTACACTTATTTAGAAAGCGTT 57.402 30.769 0.00 0.00 0.00 4.84
1975 1999 8.706035 TCAGTTACACTTATTTAGAAAGCGTTC 58.294 33.333 3.99 3.99 0.00 3.95
1976 2000 8.492748 CAGTTACACTTATTTAGAAAGCGTTCA 58.507 33.333 14.88 0.00 36.09 3.18
1977 2001 9.216117 AGTTACACTTATTTAGAAAGCGTTCAT 57.784 29.630 14.88 2.38 36.09 2.57
1980 2004 8.542497 ACACTTATTTAGAAAGCGTTCATACA 57.458 30.769 14.88 0.00 36.09 2.29
1981 2005 9.162764 ACACTTATTTAGAAAGCGTTCATACAT 57.837 29.630 14.88 5.72 36.09 2.29
1982 2006 9.988350 CACTTATTTAGAAAGCGTTCATACATT 57.012 29.630 14.88 0.00 36.09 2.71
1986 2010 8.895932 ATTTAGAAAGCGTTCATACATTTGTC 57.104 30.769 14.88 0.00 36.09 3.18
1987 2011 7.667043 TTAGAAAGCGTTCATACATTTGTCT 57.333 32.000 14.88 0.00 36.09 3.41
1988 2012 6.560253 AGAAAGCGTTCATACATTTGTCTT 57.440 33.333 14.88 0.00 36.09 3.01
1989 2013 6.970484 AGAAAGCGTTCATACATTTGTCTTT 58.030 32.000 14.88 0.00 36.09 2.52
1990 2014 7.078228 AGAAAGCGTTCATACATTTGTCTTTC 58.922 34.615 14.88 0.00 37.94 2.62
1991 2015 5.940192 AGCGTTCATACATTTGTCTTTCA 57.060 34.783 0.00 0.00 0.00 2.69
1992 2016 6.312399 AGCGTTCATACATTTGTCTTTCAA 57.688 33.333 0.00 0.00 0.00 2.69
2009 2033 9.026074 TGTCTTTCAAATTGTTCGTAATTTTCC 57.974 29.630 0.00 0.00 37.97 3.13
2010 2034 9.244799 GTCTTTCAAATTGTTCGTAATTTTCCT 57.755 29.630 0.00 0.00 37.97 3.36
2020 2044 9.887406 TTGTTCGTAATTTTCCTAGAAATGTTC 57.113 29.630 0.00 0.00 30.06 3.18
2021 2045 9.058174 TGTTCGTAATTTTCCTAGAAATGTTCA 57.942 29.630 0.00 0.00 30.06 3.18
2057 2081 7.811117 ATACAAACTACACTTTTGTAAGGCA 57.189 32.000 10.73 0.00 46.96 4.75
2058 2082 6.518208 ACAAACTACACTTTTGTAAGGCAA 57.482 33.333 0.00 0.00 43.72 4.52
2059 2083 6.327154 ACAAACTACACTTTTGTAAGGCAAC 58.673 36.000 0.00 0.00 43.72 4.17
2060 2084 6.071840 ACAAACTACACTTTTGTAAGGCAACA 60.072 34.615 0.00 0.00 43.72 3.33
2061 2085 6.709018 AACTACACTTTTGTAAGGCAACAT 57.291 33.333 0.00 0.00 37.77 2.71
2062 2086 6.709018 ACTACACTTTTGTAAGGCAACATT 57.291 33.333 0.00 0.00 37.77 2.71
2063 2087 6.735130 ACTACACTTTTGTAAGGCAACATTC 58.265 36.000 0.00 0.00 37.77 2.67
2064 2088 4.944048 ACACTTTTGTAAGGCAACATTCC 58.056 39.130 0.00 0.00 36.72 3.01
2065 2089 4.404073 ACACTTTTGTAAGGCAACATTCCA 59.596 37.500 0.00 0.00 36.72 3.53
2066 2090 5.070313 ACACTTTTGTAAGGCAACATTCCAT 59.930 36.000 0.00 0.00 36.72 3.41
2067 2091 5.406175 CACTTTTGTAAGGCAACATTCCATG 59.594 40.000 0.00 0.00 36.72 3.66
2068 2092 5.070313 ACTTTTGTAAGGCAACATTCCATGT 59.930 36.000 0.00 0.00 39.39 3.21
2069 2093 6.407979 ACTTTTGTAAGGCAACATTCCATGTT 60.408 34.615 0.00 0.00 43.57 2.71
2070 2094 7.850789 ACTTTTGTAAGGCAACATTCCATGTTT 60.851 33.333 0.00 0.00 42.25 2.83
2137 2161 8.871686 AAAACAGCAAACAGAAATAGTTTAGG 57.128 30.769 0.00 0.00 37.10 2.69
2138 2162 7.817418 AACAGCAAACAGAAATAGTTTAGGA 57.183 32.000 0.00 0.00 37.10 2.94
2139 2163 7.817418 ACAGCAAACAGAAATAGTTTAGGAA 57.183 32.000 0.00 0.00 37.10 3.36
2140 2164 8.232913 ACAGCAAACAGAAATAGTTTAGGAAA 57.767 30.769 0.00 0.00 37.10 3.13
2141 2165 8.691797 ACAGCAAACAGAAATAGTTTAGGAAAA 58.308 29.630 0.00 0.00 37.10 2.29
2142 2166 9.528018 CAGCAAACAGAAATAGTTTAGGAAAAA 57.472 29.630 0.00 0.00 37.10 1.94
2143 2167 9.529325 AGCAAACAGAAATAGTTTAGGAAAAAC 57.471 29.630 0.00 0.00 37.10 2.43
2144 2168 8.761497 GCAAACAGAAATAGTTTAGGAAAAACC 58.239 33.333 0.00 0.00 37.10 3.27
2145 2169 9.256477 CAAACAGAAATAGTTTAGGAAAAACCC 57.744 33.333 0.00 0.00 37.10 4.11
2146 2170 7.210718 ACAGAAATAGTTTAGGAAAAACCCG 57.789 36.000 0.00 0.00 40.05 5.28
2147 2171 6.999871 ACAGAAATAGTTTAGGAAAAACCCGA 59.000 34.615 0.00 0.00 40.05 5.14
2148 2172 7.174426 ACAGAAATAGTTTAGGAAAAACCCGAG 59.826 37.037 0.00 0.00 40.05 4.63
2149 2173 5.892160 AATAGTTTAGGAAAAACCCGAGC 57.108 39.130 0.00 0.00 40.05 5.03
2150 2174 3.217681 AGTTTAGGAAAAACCCGAGCA 57.782 42.857 0.00 0.00 40.05 4.26
2151 2175 3.146847 AGTTTAGGAAAAACCCGAGCAG 58.853 45.455 0.00 0.00 40.05 4.24
2152 2176 3.143728 GTTTAGGAAAAACCCGAGCAGA 58.856 45.455 0.00 0.00 40.05 4.26
2153 2177 3.495434 TTAGGAAAAACCCGAGCAGAA 57.505 42.857 0.00 0.00 40.05 3.02
2154 2178 2.358322 AGGAAAAACCCGAGCAGAAA 57.642 45.000 0.00 0.00 40.05 2.52
2155 2179 2.661718 AGGAAAAACCCGAGCAGAAAA 58.338 42.857 0.00 0.00 40.05 2.29
2156 2180 2.361119 AGGAAAAACCCGAGCAGAAAAC 59.639 45.455 0.00 0.00 40.05 2.43
2157 2181 2.545113 GGAAAAACCCGAGCAGAAAACC 60.545 50.000 0.00 0.00 0.00 3.27
2158 2182 1.770294 AAAACCCGAGCAGAAAACCA 58.230 45.000 0.00 0.00 0.00 3.67
2159 2183 1.029681 AAACCCGAGCAGAAAACCAC 58.970 50.000 0.00 0.00 0.00 4.16
2160 2184 0.106918 AACCCGAGCAGAAAACCACA 60.107 50.000 0.00 0.00 0.00 4.17
2161 2185 0.535102 ACCCGAGCAGAAAACCACAG 60.535 55.000 0.00 0.00 0.00 3.66
2162 2186 0.250295 CCCGAGCAGAAAACCACAGA 60.250 55.000 0.00 0.00 0.00 3.41
2163 2187 1.611673 CCCGAGCAGAAAACCACAGAT 60.612 52.381 0.00 0.00 0.00 2.90
2164 2188 1.734465 CCGAGCAGAAAACCACAGATC 59.266 52.381 0.00 0.00 0.00 2.75
2165 2189 2.416747 CGAGCAGAAAACCACAGATCA 58.583 47.619 0.00 0.00 0.00 2.92
2166 2190 2.807967 CGAGCAGAAAACCACAGATCAA 59.192 45.455 0.00 0.00 0.00 2.57
2167 2191 3.364366 CGAGCAGAAAACCACAGATCAAC 60.364 47.826 0.00 0.00 0.00 3.18
2168 2192 3.817647 GAGCAGAAAACCACAGATCAACT 59.182 43.478 0.00 0.00 0.00 3.16
2169 2193 3.817647 AGCAGAAAACCACAGATCAACTC 59.182 43.478 0.00 0.00 0.00 3.01
2170 2194 3.364366 GCAGAAAACCACAGATCAACTCG 60.364 47.826 0.00 0.00 0.00 4.18
2171 2195 3.809832 CAGAAAACCACAGATCAACTCGT 59.190 43.478 0.00 0.00 0.00 4.18
2172 2196 3.809832 AGAAAACCACAGATCAACTCGTG 59.190 43.478 0.00 0.00 0.00 4.35
2173 2197 1.512926 AACCACAGATCAACTCGTGC 58.487 50.000 0.00 0.00 0.00 5.34
2174 2198 0.667487 ACCACAGATCAACTCGTGCG 60.667 55.000 0.00 0.00 0.00 5.34
2175 2199 0.667487 CCACAGATCAACTCGTGCGT 60.667 55.000 0.00 0.00 0.00 5.24
2176 2200 1.139989 CACAGATCAACTCGTGCGTT 58.860 50.000 0.00 0.00 0.00 4.84
2177 2201 1.526887 CACAGATCAACTCGTGCGTTT 59.473 47.619 0.00 0.00 0.00 3.60
2178 2202 2.032894 CACAGATCAACTCGTGCGTTTT 60.033 45.455 0.00 0.00 0.00 2.43
2179 2203 2.032894 ACAGATCAACTCGTGCGTTTTG 60.033 45.455 0.00 0.00 0.00 2.44
2180 2204 2.220824 CAGATCAACTCGTGCGTTTTGA 59.779 45.455 10.95 10.95 32.71 2.69
2181 2205 2.221055 AGATCAACTCGTGCGTTTTGAC 59.779 45.455 10.84 7.20 30.99 3.18
2182 2206 0.299300 TCAACTCGTGCGTTTTGACG 59.701 50.000 0.00 0.00 36.91 4.35
2190 2214 3.870606 CGTTTTGACGCGGGAGAT 58.129 55.556 12.47 0.00 0.00 2.75
2191 2215 3.038946 CGTTTTGACGCGGGAGATA 57.961 52.632 12.47 0.00 0.00 1.98
2192 2216 1.567504 CGTTTTGACGCGGGAGATAT 58.432 50.000 12.47 0.00 0.00 1.63
2193 2217 1.521423 CGTTTTGACGCGGGAGATATC 59.479 52.381 12.47 0.00 0.00 1.63
2194 2218 1.865340 GTTTTGACGCGGGAGATATCC 59.135 52.381 12.47 0.00 0.00 2.59
2195 2219 1.116308 TTTGACGCGGGAGATATCCA 58.884 50.000 12.47 0.00 0.00 3.41
2196 2220 0.387929 TTGACGCGGGAGATATCCAC 59.612 55.000 12.47 0.00 0.00 4.02
2197 2221 1.289380 GACGCGGGAGATATCCACC 59.711 63.158 12.47 3.61 0.00 4.61
2198 2222 1.456892 ACGCGGGAGATATCCACCA 60.457 57.895 12.47 0.00 0.00 4.17
2199 2223 0.832135 ACGCGGGAGATATCCACCAT 60.832 55.000 12.47 0.00 0.00 3.55
2200 2224 0.108615 CGCGGGAGATATCCACCATC 60.109 60.000 8.98 7.58 0.00 3.51
2201 2225 0.250513 GCGGGAGATATCCACCATCC 59.749 60.000 8.98 8.61 0.00 3.51
2202 2226 1.944177 CGGGAGATATCCACCATCCT 58.056 55.000 8.98 0.00 0.00 3.24
2203 2227 2.260822 CGGGAGATATCCACCATCCTT 58.739 52.381 8.98 0.00 0.00 3.36
2204 2228 2.027745 CGGGAGATATCCACCATCCTTG 60.028 54.545 8.98 3.73 0.00 3.61
2205 2229 3.251484 GGGAGATATCCACCATCCTTGA 58.749 50.000 8.98 0.00 0.00 3.02
2206 2230 3.008485 GGGAGATATCCACCATCCTTGAC 59.992 52.174 8.98 0.00 0.00 3.18
2207 2231 3.306364 GGAGATATCCACCATCCTTGACG 60.306 52.174 0.18 0.00 0.00 4.35
2208 2232 3.309296 AGATATCCACCATCCTTGACGT 58.691 45.455 0.00 0.00 0.00 4.34
2209 2233 3.322254 AGATATCCACCATCCTTGACGTC 59.678 47.826 9.11 9.11 0.00 4.34
2210 2234 0.175760 ATCCACCATCCTTGACGTCG 59.824 55.000 11.62 0.00 0.00 5.12
2211 2235 2.100631 CCACCATCCTTGACGTCGC 61.101 63.158 11.62 0.00 0.00 5.19
2212 2236 2.100631 CACCATCCTTGACGTCGCC 61.101 63.158 11.62 0.00 0.00 5.54
2213 2237 2.283529 ACCATCCTTGACGTCGCCT 61.284 57.895 11.62 0.00 0.00 5.52
2214 2238 1.079127 CCATCCTTGACGTCGCCTT 60.079 57.895 11.62 0.00 0.00 4.35
2215 2239 1.084370 CCATCCTTGACGTCGCCTTC 61.084 60.000 11.62 0.00 0.00 3.46
2216 2240 0.108615 CATCCTTGACGTCGCCTTCT 60.109 55.000 11.62 0.00 0.00 2.85
2217 2241 0.608640 ATCCTTGACGTCGCCTTCTT 59.391 50.000 11.62 0.00 0.00 2.52
2218 2242 0.391597 TCCTTGACGTCGCCTTCTTT 59.608 50.000 11.62 0.00 0.00 2.52
2219 2243 0.790814 CCTTGACGTCGCCTTCTTTC 59.209 55.000 11.62 0.00 0.00 2.62
2220 2244 1.497991 CTTGACGTCGCCTTCTTTCA 58.502 50.000 11.62 0.00 0.00 2.69
2221 2245 1.864711 CTTGACGTCGCCTTCTTTCAA 59.135 47.619 11.62 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 8.276252 TGATAAGGTTAAGCTTGACAAATACC 57.724 34.615 26.20 10.91 0.00 2.73
199 201 6.946340 TGAATGCTTTCTATCTTCACCAGTA 58.054 36.000 12.96 0.00 32.78 2.74
516 536 4.482025 TCCAGGGATAGGTTGGAAATCATT 59.518 41.667 0.00 0.00 38.03 2.57
517 537 4.054369 TCCAGGGATAGGTTGGAAATCAT 58.946 43.478 0.00 0.00 38.03 2.45
544 564 0.035056 GGTTGCACCTGCCTAGTCAT 60.035 55.000 0.00 0.00 41.18 3.06
547 567 2.153401 TGGGTTGCACCTGCCTAGT 61.153 57.895 5.48 0.00 38.64 2.57
667 687 4.889409 CCACCATATGCATTAAACTGGACT 59.111 41.667 3.54 0.00 0.00 3.85
891 912 0.529378 GTGGGGCTTCAAGCAATCTG 59.471 55.000 12.53 0.00 44.75 2.90
933 954 1.498865 CTGTTCAGTGGGTGCACGTC 61.499 60.000 11.45 6.31 0.00 4.34
964 985 0.107897 TTCGTTCGCAGCACCCATAT 60.108 50.000 0.00 0.00 0.00 1.78
1092 1113 0.173481 ACACACATGCTATCGACGCT 59.827 50.000 9.59 0.00 0.00 5.07
1096 1117 2.418609 CCAGGAACACACATGCTATCGA 60.419 50.000 0.00 0.00 0.00 3.59
1115 1136 2.114616 GAGGAGCTTCATCTTCCTCCA 58.885 52.381 8.27 0.00 44.95 3.86
1445 1469 2.111043 CCGCACGATTAGGCCCAT 59.889 61.111 0.00 0.00 0.00 4.00
1541 1565 1.459592 GTCCTTTCATCGACAACACCG 59.540 52.381 0.00 0.00 0.00 4.94
1542 1566 2.489971 TGTCCTTTCATCGACAACACC 58.510 47.619 0.00 0.00 36.10 4.16
1543 1567 4.527564 CTTTGTCCTTTCATCGACAACAC 58.472 43.478 2.29 0.00 45.95 3.32
1544 1568 3.563808 CCTTTGTCCTTTCATCGACAACA 59.436 43.478 2.29 0.00 45.95 3.33
1545 1569 3.813166 TCCTTTGTCCTTTCATCGACAAC 59.187 43.478 2.29 0.00 45.95 3.32
1546 1570 4.079980 TCCTTTGTCCTTTCATCGACAA 57.920 40.909 0.00 0.00 44.94 3.18
1547 1571 3.762407 TCCTTTGTCCTTTCATCGACA 57.238 42.857 0.00 0.00 37.23 4.35
1548 1572 4.455877 ACAATCCTTTGTCCTTTCATCGAC 59.544 41.667 0.00 0.00 42.43 4.20
1549 1573 4.651778 ACAATCCTTTGTCCTTTCATCGA 58.348 39.130 0.00 0.00 42.43 3.59
1550 1574 5.376854 AACAATCCTTTGTCCTTTCATCG 57.623 39.130 0.00 0.00 45.30 3.84
1551 1575 6.753744 GCATAACAATCCTTTGTCCTTTCATC 59.246 38.462 0.00 0.00 45.30 2.92
1552 1576 6.211184 TGCATAACAATCCTTTGTCCTTTCAT 59.789 34.615 0.00 0.00 45.30 2.57
1553 1577 5.538053 TGCATAACAATCCTTTGTCCTTTCA 59.462 36.000 0.00 0.00 45.30 2.69
1554 1578 6.024552 TGCATAACAATCCTTTGTCCTTTC 57.975 37.500 0.00 0.00 45.30 2.62
1555 1579 6.418057 TTGCATAACAATCCTTTGTCCTTT 57.582 33.333 0.00 0.00 45.30 3.11
1556 1580 6.418057 TTTGCATAACAATCCTTTGTCCTT 57.582 33.333 0.00 0.00 45.30 3.36
1557 1581 5.047092 CCTTTGCATAACAATCCTTTGTCCT 60.047 40.000 0.00 0.00 45.30 3.85
1558 1582 5.047377 TCCTTTGCATAACAATCCTTTGTCC 60.047 40.000 0.00 0.00 45.30 4.02
1559 1583 6.024552 TCCTTTGCATAACAATCCTTTGTC 57.975 37.500 0.00 0.00 45.30 3.18
1561 1585 5.349543 GCTTCCTTTGCATAACAATCCTTTG 59.650 40.000 0.00 0.00 38.31 2.77
1562 1586 5.246883 AGCTTCCTTTGCATAACAATCCTTT 59.753 36.000 0.00 0.00 38.31 3.11
1563 1587 4.774200 AGCTTCCTTTGCATAACAATCCTT 59.226 37.500 0.00 0.00 38.31 3.36
1564 1588 4.347607 AGCTTCCTTTGCATAACAATCCT 58.652 39.130 0.00 0.00 38.31 3.24
1565 1589 4.725790 AGCTTCCTTTGCATAACAATCC 57.274 40.909 0.00 0.00 38.31 3.01
1566 1590 6.683974 TCTAGCTTCCTTTGCATAACAATC 57.316 37.500 0.00 0.00 38.31 2.67
1567 1591 7.123247 ACATTCTAGCTTCCTTTGCATAACAAT 59.877 33.333 0.00 0.00 38.31 2.71
1568 1592 6.434028 ACATTCTAGCTTCCTTTGCATAACAA 59.566 34.615 0.00 0.00 36.13 2.83
1569 1593 5.945784 ACATTCTAGCTTCCTTTGCATAACA 59.054 36.000 0.00 0.00 0.00 2.41
1570 1594 6.442513 ACATTCTAGCTTCCTTTGCATAAC 57.557 37.500 0.00 0.00 0.00 1.89
1571 1595 6.886459 AGAACATTCTAGCTTCCTTTGCATAA 59.114 34.615 0.00 0.00 35.34 1.90
1572 1596 6.317140 CAGAACATTCTAGCTTCCTTTGCATA 59.683 38.462 0.00 0.00 35.34 3.14
1573 1597 5.125097 CAGAACATTCTAGCTTCCTTTGCAT 59.875 40.000 0.00 0.00 35.34 3.96
1574 1598 4.456911 CAGAACATTCTAGCTTCCTTTGCA 59.543 41.667 0.00 0.00 35.34 4.08
1575 1599 4.457257 ACAGAACATTCTAGCTTCCTTTGC 59.543 41.667 0.00 0.00 35.34 3.68
1576 1600 6.376978 CAACAGAACATTCTAGCTTCCTTTG 58.623 40.000 0.00 0.00 35.34 2.77
1577 1601 5.048434 GCAACAGAACATTCTAGCTTCCTTT 60.048 40.000 0.00 0.00 35.34 3.11
1578 1602 4.457257 GCAACAGAACATTCTAGCTTCCTT 59.543 41.667 0.00 0.00 35.34 3.36
1579 1603 4.006319 GCAACAGAACATTCTAGCTTCCT 58.994 43.478 0.00 0.00 35.34 3.36
1580 1604 3.127721 GGCAACAGAACATTCTAGCTTCC 59.872 47.826 0.00 0.63 35.34 3.46
1581 1605 3.181516 CGGCAACAGAACATTCTAGCTTC 60.182 47.826 0.00 0.00 35.34 3.86
1582 1606 2.744202 CGGCAACAGAACATTCTAGCTT 59.256 45.455 0.00 0.00 35.34 3.74
1583 1607 2.289694 ACGGCAACAGAACATTCTAGCT 60.290 45.455 0.00 0.00 35.34 3.32
1584 1608 2.076863 ACGGCAACAGAACATTCTAGC 58.923 47.619 0.00 0.00 35.34 3.42
1585 1609 4.466828 CAAACGGCAACAGAACATTCTAG 58.533 43.478 0.00 0.00 35.34 2.43
1586 1610 3.252215 CCAAACGGCAACAGAACATTCTA 59.748 43.478 0.00 0.00 35.34 2.10
1587 1611 2.034558 CCAAACGGCAACAGAACATTCT 59.965 45.455 0.00 0.00 38.25 2.40
1588 1612 2.393764 CCAAACGGCAACAGAACATTC 58.606 47.619 0.00 0.00 0.00 2.67
1589 1613 1.068434 CCCAAACGGCAACAGAACATT 59.932 47.619 0.00 0.00 0.00 2.71
1590 1614 0.673437 CCCAAACGGCAACAGAACAT 59.327 50.000 0.00 0.00 0.00 2.71
1591 1615 1.388065 CCCCAAACGGCAACAGAACA 61.388 55.000 0.00 0.00 0.00 3.18
1592 1616 1.362355 CCCCAAACGGCAACAGAAC 59.638 57.895 0.00 0.00 0.00 3.01
1593 1617 1.830408 CCCCCAAACGGCAACAGAA 60.830 57.895 0.00 0.00 0.00 3.02
1594 1618 2.203422 CCCCCAAACGGCAACAGA 60.203 61.111 0.00 0.00 0.00 3.41
1595 1619 2.520741 ACCCCCAAACGGCAACAG 60.521 61.111 0.00 0.00 0.00 3.16
1596 1620 2.835431 CACCCCCAAACGGCAACA 60.835 61.111 0.00 0.00 0.00 3.33
1597 1621 2.358193 GAACACCCCCAAACGGCAAC 62.358 60.000 0.00 0.00 0.00 4.17
1598 1622 2.042843 AACACCCCCAAACGGCAA 60.043 55.556 0.00 0.00 0.00 4.52
1599 1623 2.519780 GAACACCCCCAAACGGCA 60.520 61.111 0.00 0.00 0.00 5.69
1600 1624 3.299977 GGAACACCCCCAAACGGC 61.300 66.667 0.00 0.00 0.00 5.68
1601 1625 2.196229 TGGAACACCCCCAAACGG 59.804 61.111 0.00 0.00 0.00 4.44
1611 1635 6.940252 TGCTAGAGGCGAAGAATGGAACAC 62.940 50.000 0.00 0.00 43.74 3.32
1612 1636 4.942457 TGCTAGAGGCGAAGAATGGAACA 61.942 47.826 0.00 0.00 44.82 3.18
1613 1637 2.205911 GCTAGAGGCGAAGAATGGAAC 58.794 52.381 0.00 0.00 0.00 3.62
1614 1638 1.831106 TGCTAGAGGCGAAGAATGGAA 59.169 47.619 0.00 0.00 45.43 3.53
1615 1639 1.485124 TGCTAGAGGCGAAGAATGGA 58.515 50.000 0.00 0.00 45.43 3.41
1616 1640 2.540265 ATGCTAGAGGCGAAGAATGG 57.460 50.000 0.00 0.00 45.43 3.16
1617 1641 4.574013 AGAAAATGCTAGAGGCGAAGAATG 59.426 41.667 0.00 0.00 45.43 2.67
1618 1642 4.775236 AGAAAATGCTAGAGGCGAAGAAT 58.225 39.130 0.00 0.00 45.43 2.40
1619 1643 4.207891 AGAAAATGCTAGAGGCGAAGAA 57.792 40.909 0.00 0.00 45.43 2.52
1620 1644 3.895232 AGAAAATGCTAGAGGCGAAGA 57.105 42.857 0.00 0.00 45.43 2.87
1621 1645 4.954092 AAAGAAAATGCTAGAGGCGAAG 57.046 40.909 0.00 0.00 45.43 3.79
1622 1646 4.518970 ACAAAAGAAAATGCTAGAGGCGAA 59.481 37.500 0.00 0.00 45.43 4.70
1623 1647 4.072131 ACAAAAGAAAATGCTAGAGGCGA 58.928 39.130 0.00 0.00 45.43 5.54
1624 1648 4.425577 ACAAAAGAAAATGCTAGAGGCG 57.574 40.909 0.00 0.00 45.43 5.52
1625 1649 5.406477 CCAAACAAAAGAAAATGCTAGAGGC 59.594 40.000 0.00 0.00 42.22 4.70
1626 1650 6.515832 ACCAAACAAAAGAAAATGCTAGAGG 58.484 36.000 0.00 0.00 0.00 3.69
1627 1651 8.424274 AAACCAAACAAAAGAAAATGCTAGAG 57.576 30.769 0.00 0.00 0.00 2.43
1628 1652 8.037758 TGAAACCAAACAAAAGAAAATGCTAGA 58.962 29.630 0.00 0.00 0.00 2.43
1629 1653 8.195617 TGAAACCAAACAAAAGAAAATGCTAG 57.804 30.769 0.00 0.00 0.00 3.42
1630 1654 8.729805 ATGAAACCAAACAAAAGAAAATGCTA 57.270 26.923 0.00 0.00 0.00 3.49
1631 1655 7.628769 ATGAAACCAAACAAAAGAAAATGCT 57.371 28.000 0.00 0.00 0.00 3.79
1632 1656 7.164008 CGAATGAAACCAAACAAAAGAAAATGC 59.836 33.333 0.00 0.00 0.00 3.56
1633 1657 7.639461 CCGAATGAAACCAAACAAAAGAAAATG 59.361 33.333 0.00 0.00 0.00 2.32
1634 1658 7.335673 ACCGAATGAAACCAAACAAAAGAAAAT 59.664 29.630 0.00 0.00 0.00 1.82
1635 1659 6.651225 ACCGAATGAAACCAAACAAAAGAAAA 59.349 30.769 0.00 0.00 0.00 2.29
1636 1660 6.166982 ACCGAATGAAACCAAACAAAAGAAA 58.833 32.000 0.00 0.00 0.00 2.52
1637 1661 5.725362 ACCGAATGAAACCAAACAAAAGAA 58.275 33.333 0.00 0.00 0.00 2.52
1638 1662 5.331876 ACCGAATGAAACCAAACAAAAGA 57.668 34.783 0.00 0.00 0.00 2.52
1639 1663 6.128418 ACAAACCGAATGAAACCAAACAAAAG 60.128 34.615 0.00 0.00 0.00 2.27
1640 1664 5.701290 ACAAACCGAATGAAACCAAACAAAA 59.299 32.000 0.00 0.00 0.00 2.44
1641 1665 5.238583 ACAAACCGAATGAAACCAAACAAA 58.761 33.333 0.00 0.00 0.00 2.83
1642 1666 4.822026 ACAAACCGAATGAAACCAAACAA 58.178 34.783 0.00 0.00 0.00 2.83
1643 1667 4.457834 ACAAACCGAATGAAACCAAACA 57.542 36.364 0.00 0.00 0.00 2.83
1644 1668 5.499493 CGAAACAAACCGAATGAAACCAAAC 60.499 40.000 0.00 0.00 0.00 2.93
1645 1669 4.563184 CGAAACAAACCGAATGAAACCAAA 59.437 37.500 0.00 0.00 0.00 3.28
1646 1670 4.106197 CGAAACAAACCGAATGAAACCAA 58.894 39.130 0.00 0.00 0.00 3.67
1647 1671 3.128938 ACGAAACAAACCGAATGAAACCA 59.871 39.130 0.00 0.00 0.00 3.67
1648 1672 3.484285 CACGAAACAAACCGAATGAAACC 59.516 43.478 0.00 0.00 0.00 3.27
1649 1673 4.099824 ACACGAAACAAACCGAATGAAAC 58.900 39.130 0.00 0.00 0.00 2.78
1650 1674 4.358494 ACACGAAACAAACCGAATGAAA 57.642 36.364 0.00 0.00 0.00 2.69
1651 1675 4.358494 AACACGAAACAAACCGAATGAA 57.642 36.364 0.00 0.00 0.00 2.57
1652 1676 4.358494 AAACACGAAACAAACCGAATGA 57.642 36.364 0.00 0.00 0.00 2.57
1653 1677 5.443142 AAAAACACGAAACAAACCGAATG 57.557 34.783 0.00 0.00 0.00 2.67
1825 1849 9.303537 CGTTCCTAAATTTTAAAGTGTTCCAAA 57.696 29.630 0.00 0.00 0.00 3.28
1826 1850 8.468399 ACGTTCCTAAATTTTAAAGTGTTCCAA 58.532 29.630 0.00 0.00 0.00 3.53
1827 1851 7.998580 ACGTTCCTAAATTTTAAAGTGTTCCA 58.001 30.769 0.00 0.00 0.00 3.53
1828 1852 8.861033 AACGTTCCTAAATTTTAAAGTGTTCC 57.139 30.769 0.00 0.00 0.00 3.62
1845 1869 7.977293 GCATACCCAAATTTATAAAACGTTCCT 59.023 33.333 0.00 0.00 0.00 3.36
1846 1870 7.760340 TGCATACCCAAATTTATAAAACGTTCC 59.240 33.333 0.00 0.00 0.00 3.62
1847 1871 8.588789 GTGCATACCCAAATTTATAAAACGTTC 58.411 33.333 0.00 0.00 0.00 3.95
1848 1872 8.308207 AGTGCATACCCAAATTTATAAAACGTT 58.692 29.630 1.21 0.00 0.00 3.99
1849 1873 7.832769 AGTGCATACCCAAATTTATAAAACGT 58.167 30.769 1.21 0.00 0.00 3.99
1850 1874 8.696410 AAGTGCATACCCAAATTTATAAAACG 57.304 30.769 1.21 0.00 0.00 3.60
1852 1876 9.660180 GGAAAGTGCATACCCAAATTTATAAAA 57.340 29.630 1.21 0.00 0.00 1.52
1853 1877 8.816894 TGGAAAGTGCATACCCAAATTTATAAA 58.183 29.630 0.00 0.00 0.00 1.40
1854 1878 8.367660 TGGAAAGTGCATACCCAAATTTATAA 57.632 30.769 0.00 0.00 0.00 0.98
1855 1879 7.962995 TGGAAAGTGCATACCCAAATTTATA 57.037 32.000 0.00 0.00 0.00 0.98
1856 1880 6.865834 TGGAAAGTGCATACCCAAATTTAT 57.134 33.333 0.00 0.00 0.00 1.40
1857 1881 6.865834 ATGGAAAGTGCATACCCAAATTTA 57.134 33.333 0.00 0.00 0.00 1.40
1858 1882 5.760484 ATGGAAAGTGCATACCCAAATTT 57.240 34.783 0.00 0.00 0.00 1.82
1859 1883 6.865834 TTATGGAAAGTGCATACCCAAATT 57.134 33.333 0.00 0.00 30.26 1.82
1860 1884 6.865834 TTTATGGAAAGTGCATACCCAAAT 57.134 33.333 0.00 0.00 30.26 2.32
1861 1885 6.672266 TTTTATGGAAAGTGCATACCCAAA 57.328 33.333 0.00 0.00 30.26 3.28
1862 1886 6.212388 ACATTTTATGGAAAGTGCATACCCAA 59.788 34.615 0.00 0.00 36.10 4.12
1863 1887 5.719085 ACATTTTATGGAAAGTGCATACCCA 59.281 36.000 0.00 0.00 36.10 4.51
1864 1888 6.220726 ACATTTTATGGAAAGTGCATACCC 57.779 37.500 0.00 0.00 36.10 3.69
1865 1889 6.127479 TGGACATTTTATGGAAAGTGCATACC 60.127 38.462 0.00 0.00 36.10 2.73
1866 1890 6.862209 TGGACATTTTATGGAAAGTGCATAC 58.138 36.000 0.00 0.00 36.10 2.39
1867 1891 7.490840 CATGGACATTTTATGGAAAGTGCATA 58.509 34.615 0.00 0.00 36.41 3.14
1868 1892 5.999205 TGGACATTTTATGGAAAGTGCAT 57.001 34.783 0.00 0.00 36.10 3.96
1869 1893 5.722263 CATGGACATTTTATGGAAAGTGCA 58.278 37.500 0.00 0.00 36.10 4.57
1870 1894 4.567959 GCATGGACATTTTATGGAAAGTGC 59.432 41.667 0.00 0.00 36.10 4.40
1871 1895 4.799949 CGCATGGACATTTTATGGAAAGTG 59.200 41.667 0.00 0.00 38.05 3.16
1872 1896 4.677779 GCGCATGGACATTTTATGGAAAGT 60.678 41.667 0.30 0.00 33.60 2.66
1873 1897 3.798337 GCGCATGGACATTTTATGGAAAG 59.202 43.478 0.30 0.00 33.60 2.62
1874 1898 3.430098 GGCGCATGGACATTTTATGGAAA 60.430 43.478 10.83 0.00 33.60 3.13
1875 1899 2.100584 GGCGCATGGACATTTTATGGAA 59.899 45.455 10.83 0.00 33.60 3.53
1876 1900 1.680735 GGCGCATGGACATTTTATGGA 59.319 47.619 10.83 0.00 33.60 3.41
1877 1901 1.682854 AGGCGCATGGACATTTTATGG 59.317 47.619 10.83 0.00 33.60 2.74
1878 1902 3.441496 AAGGCGCATGGACATTTTATG 57.559 42.857 10.83 0.00 0.00 1.90
1879 1903 4.470334 AAAAGGCGCATGGACATTTTAT 57.530 36.364 10.83 0.00 0.00 1.40
1880 1904 3.951775 AAAAGGCGCATGGACATTTTA 57.048 38.095 10.83 0.00 0.00 1.52
1881 1905 2.837532 AAAAGGCGCATGGACATTTT 57.162 40.000 10.83 0.00 0.00 1.82
1882 1906 3.951775 TTAAAAGGCGCATGGACATTT 57.048 38.095 10.83 1.19 0.00 2.32
1883 1907 3.951775 TTTAAAAGGCGCATGGACATT 57.048 38.095 10.83 0.00 0.00 2.71
1884 1908 3.195396 ACATTTAAAAGGCGCATGGACAT 59.805 39.130 10.83 0.00 0.00 3.06
1885 1909 2.560542 ACATTTAAAAGGCGCATGGACA 59.439 40.909 10.83 0.00 0.00 4.02
1886 1910 3.230743 ACATTTAAAAGGCGCATGGAC 57.769 42.857 10.83 0.00 0.00 4.02
1887 1911 3.951775 AACATTTAAAAGGCGCATGGA 57.048 38.095 10.83 0.00 0.00 3.41
1888 1912 4.142924 GGAAAACATTTAAAAGGCGCATGG 60.143 41.667 10.83 0.00 0.00 3.66
1889 1913 4.450419 TGGAAAACATTTAAAAGGCGCATG 59.550 37.500 10.83 4.74 0.00 4.06
1890 1914 4.450757 GTGGAAAACATTTAAAAGGCGCAT 59.549 37.500 10.83 0.00 0.00 4.73
1891 1915 3.804873 GTGGAAAACATTTAAAAGGCGCA 59.195 39.130 10.83 0.00 0.00 6.09
1892 1916 3.185594 GGTGGAAAACATTTAAAAGGCGC 59.814 43.478 0.00 0.00 0.00 6.53
1893 1917 3.743911 GGGTGGAAAACATTTAAAAGGCG 59.256 43.478 0.00 0.00 0.00 5.52
1894 1918 4.709250 TGGGTGGAAAACATTTAAAAGGC 58.291 39.130 0.00 0.00 0.00 4.35
1895 1919 7.040755 GGAATTGGGTGGAAAACATTTAAAAGG 60.041 37.037 0.00 0.00 0.00 3.11
1896 1920 7.500559 TGGAATTGGGTGGAAAACATTTAAAAG 59.499 33.333 0.00 0.00 0.00 2.27
1897 1921 7.346471 TGGAATTGGGTGGAAAACATTTAAAA 58.654 30.769 0.00 0.00 0.00 1.52
1898 1922 6.900194 TGGAATTGGGTGGAAAACATTTAAA 58.100 32.000 0.00 0.00 0.00 1.52
1899 1923 6.500589 TGGAATTGGGTGGAAAACATTTAA 57.499 33.333 0.00 0.00 0.00 1.52
1900 1924 6.694445 ATGGAATTGGGTGGAAAACATTTA 57.306 33.333 0.00 0.00 0.00 1.40
1901 1925 5.581350 ATGGAATTGGGTGGAAAACATTT 57.419 34.783 0.00 0.00 0.00 2.32
1902 1926 6.694445 TTATGGAATTGGGTGGAAAACATT 57.306 33.333 0.00 0.00 0.00 2.71
1903 1927 6.694445 TTTATGGAATTGGGTGGAAAACAT 57.306 33.333 0.00 0.00 0.00 2.71
1904 1928 6.694445 ATTTATGGAATTGGGTGGAAAACA 57.306 33.333 0.00 0.00 0.00 2.83
1905 1929 7.882791 AGAAATTTATGGAATTGGGTGGAAAAC 59.117 33.333 0.00 0.00 37.98 2.43
1906 1930 7.983363 AGAAATTTATGGAATTGGGTGGAAAA 58.017 30.769 0.00 0.00 37.98 2.29
1907 1931 7.566658 AGAAATTTATGGAATTGGGTGGAAA 57.433 32.000 0.00 0.00 37.98 3.13
1908 1932 7.236432 TGAAGAAATTTATGGAATTGGGTGGAA 59.764 33.333 0.00 0.00 37.98 3.53
1909 1933 6.728164 TGAAGAAATTTATGGAATTGGGTGGA 59.272 34.615 0.00 0.00 37.98 4.02
1910 1934 6.818142 GTGAAGAAATTTATGGAATTGGGTGG 59.182 38.462 0.00 0.00 37.98 4.61
1911 1935 7.385267 TGTGAAGAAATTTATGGAATTGGGTG 58.615 34.615 0.00 0.00 37.98 4.61
1912 1936 7.552050 TGTGAAGAAATTTATGGAATTGGGT 57.448 32.000 0.00 0.00 37.98 4.51
1950 1974 8.492748 TGAACGCTTTCTAAATAAGTGTAACTG 58.507 33.333 4.43 0.00 43.43 3.16
1951 1975 8.597662 TGAACGCTTTCTAAATAAGTGTAACT 57.402 30.769 4.43 0.00 43.43 2.24
1954 1978 9.642327 TGTATGAACGCTTTCTAAATAAGTGTA 57.358 29.630 4.43 0.00 43.43 2.90
1955 1979 8.542497 TGTATGAACGCTTTCTAAATAAGTGT 57.458 30.769 4.43 0.00 45.44 3.55
1956 1980 9.988350 AATGTATGAACGCTTTCTAAATAAGTG 57.012 29.630 4.43 0.00 38.68 3.16
1960 1984 9.982291 GACAAATGTATGAACGCTTTCTAAATA 57.018 29.630 4.43 0.00 32.36 1.40
1961 1985 8.730680 AGACAAATGTATGAACGCTTTCTAAAT 58.269 29.630 4.43 0.00 32.36 1.40
1962 1986 8.094798 AGACAAATGTATGAACGCTTTCTAAA 57.905 30.769 4.43 0.00 32.36 1.85
1963 1987 7.667043 AGACAAATGTATGAACGCTTTCTAA 57.333 32.000 4.43 0.00 32.36 2.10
1964 1988 7.667043 AAGACAAATGTATGAACGCTTTCTA 57.333 32.000 4.43 0.00 32.36 2.10
1965 1989 6.560253 AAGACAAATGTATGAACGCTTTCT 57.440 33.333 4.43 0.00 32.36 2.52
1966 1990 6.855914 TGAAAGACAAATGTATGAACGCTTTC 59.144 34.615 0.00 0.00 0.00 2.62
1967 1991 6.734137 TGAAAGACAAATGTATGAACGCTTT 58.266 32.000 0.00 0.00 0.00 3.51
1968 1992 6.312399 TGAAAGACAAATGTATGAACGCTT 57.688 33.333 0.00 0.00 0.00 4.68
1969 1993 5.940192 TGAAAGACAAATGTATGAACGCT 57.060 34.783 0.00 0.00 0.00 5.07
1970 1994 6.984740 TTTGAAAGACAAATGTATGAACGC 57.015 33.333 0.00 0.00 42.57 4.84
1983 2007 9.026074 GGAAAATTACGAACAATTTGAAAGACA 57.974 29.630 2.79 0.00 37.97 3.41
1984 2008 9.244799 AGGAAAATTACGAACAATTTGAAAGAC 57.755 29.630 2.79 0.00 37.97 3.01
1994 2018 9.887406 GAACATTTCTAGGAAAATTACGAACAA 57.113 29.630 0.00 0.00 0.00 2.83
1995 2019 9.058174 TGAACATTTCTAGGAAAATTACGAACA 57.942 29.630 0.00 0.00 0.00 3.18
2031 2055 9.509956 TGCCTTACAAAAGTGTAGTTTGTATAT 57.490 29.630 9.77 0.00 45.83 0.86
2032 2056 8.905660 TGCCTTACAAAAGTGTAGTTTGTATA 57.094 30.769 9.77 2.81 45.83 1.47
2033 2057 7.811117 TGCCTTACAAAAGTGTAGTTTGTAT 57.189 32.000 9.77 0.00 45.83 2.29
2034 2058 7.120873 TGTTGCCTTACAAAAGTGTAGTTTGTA 59.879 33.333 5.81 5.81 45.11 2.41
2036 2060 6.326375 TGTTGCCTTACAAAAGTGTAGTTTG 58.674 36.000 0.00 0.00 41.25 2.93
2037 2061 6.518208 TGTTGCCTTACAAAAGTGTAGTTT 57.482 33.333 0.00 0.00 41.25 2.66
2038 2062 6.709018 ATGTTGCCTTACAAAAGTGTAGTT 57.291 33.333 0.00 0.00 41.25 2.24
2039 2063 6.238925 GGAATGTTGCCTTACAAAAGTGTAGT 60.239 38.462 0.00 0.00 41.25 2.73
2040 2064 6.149633 GGAATGTTGCCTTACAAAAGTGTAG 58.850 40.000 0.00 0.00 41.25 2.74
2041 2065 5.594725 TGGAATGTTGCCTTACAAAAGTGTA 59.405 36.000 0.00 0.00 40.82 2.90
2042 2066 4.404073 TGGAATGTTGCCTTACAAAAGTGT 59.596 37.500 0.00 0.00 40.82 3.55
2043 2067 4.942852 TGGAATGTTGCCTTACAAAAGTG 58.057 39.130 0.00 0.00 40.82 3.16
2044 2068 5.540911 CATGGAATGTTGCCTTACAAAAGT 58.459 37.500 0.00 0.00 40.82 2.66
2111 2135 9.313118 CCTAAACTATTTCTGTTTGCTGTTTTT 57.687 29.630 0.00 0.00 38.02 1.94
2112 2136 8.691797 TCCTAAACTATTTCTGTTTGCTGTTTT 58.308 29.630 0.00 0.00 38.02 2.43
2113 2137 8.232913 TCCTAAACTATTTCTGTTTGCTGTTT 57.767 30.769 0.00 0.00 38.02 2.83
2114 2138 7.817418 TCCTAAACTATTTCTGTTTGCTGTT 57.183 32.000 0.00 0.00 38.02 3.16
2115 2139 7.817418 TTCCTAAACTATTTCTGTTTGCTGT 57.183 32.000 0.00 0.00 38.02 4.40
2116 2140 9.528018 TTTTTCCTAAACTATTTCTGTTTGCTG 57.472 29.630 0.00 0.00 38.02 4.41
2117 2141 9.529325 GTTTTTCCTAAACTATTTCTGTTTGCT 57.471 29.630 0.00 0.00 38.02 3.91
2118 2142 8.761497 GGTTTTTCCTAAACTATTTCTGTTTGC 58.239 33.333 0.00 0.00 38.02 3.68
2119 2143 9.256477 GGGTTTTTCCTAAACTATTTCTGTTTG 57.744 33.333 0.00 0.00 38.02 2.93
2120 2144 8.139350 CGGGTTTTTCCTAAACTATTTCTGTTT 58.861 33.333 0.00 0.00 40.27 2.83
2121 2145 7.503230 TCGGGTTTTTCCTAAACTATTTCTGTT 59.497 33.333 0.00 0.00 36.25 3.16
2122 2146 6.999871 TCGGGTTTTTCCTAAACTATTTCTGT 59.000 34.615 0.00 0.00 36.25 3.41
2123 2147 7.443259 TCGGGTTTTTCCTAAACTATTTCTG 57.557 36.000 0.00 0.00 36.25 3.02
2124 2148 6.150641 GCTCGGGTTTTTCCTAAACTATTTCT 59.849 38.462 0.00 0.00 36.25 2.52
2125 2149 6.072342 TGCTCGGGTTTTTCCTAAACTATTTC 60.072 38.462 0.00 0.00 36.25 2.17
2126 2150 5.771165 TGCTCGGGTTTTTCCTAAACTATTT 59.229 36.000 0.00 0.00 36.25 1.40
2127 2151 5.318630 TGCTCGGGTTTTTCCTAAACTATT 58.681 37.500 0.00 0.00 36.25 1.73
2128 2152 4.913784 TGCTCGGGTTTTTCCTAAACTAT 58.086 39.130 0.00 0.00 36.25 2.12
2129 2153 4.040706 TCTGCTCGGGTTTTTCCTAAACTA 59.959 41.667 0.00 0.00 36.25 2.24
2130 2154 3.146847 CTGCTCGGGTTTTTCCTAAACT 58.853 45.455 0.00 0.00 36.25 2.66
2131 2155 3.143728 TCTGCTCGGGTTTTTCCTAAAC 58.856 45.455 0.00 0.00 36.25 2.01
2132 2156 3.495434 TCTGCTCGGGTTTTTCCTAAA 57.505 42.857 0.00 0.00 36.25 1.85
2133 2157 3.495434 TTCTGCTCGGGTTTTTCCTAA 57.505 42.857 0.00 0.00 36.25 2.69
2134 2158 3.495434 TTTCTGCTCGGGTTTTTCCTA 57.505 42.857 0.00 0.00 36.25 2.94
2135 2159 2.358322 TTTCTGCTCGGGTTTTTCCT 57.642 45.000 0.00 0.00 36.25 3.36
2136 2160 2.545113 GGTTTTCTGCTCGGGTTTTTCC 60.545 50.000 0.00 0.00 0.00 3.13
2137 2161 2.100087 TGGTTTTCTGCTCGGGTTTTTC 59.900 45.455 0.00 0.00 0.00 2.29
2138 2162 2.104170 TGGTTTTCTGCTCGGGTTTTT 58.896 42.857 0.00 0.00 0.00 1.94
2139 2163 1.407618 GTGGTTTTCTGCTCGGGTTTT 59.592 47.619 0.00 0.00 0.00 2.43
2140 2164 1.029681 GTGGTTTTCTGCTCGGGTTT 58.970 50.000 0.00 0.00 0.00 3.27
2141 2165 0.106918 TGTGGTTTTCTGCTCGGGTT 60.107 50.000 0.00 0.00 0.00 4.11
2142 2166 0.535102 CTGTGGTTTTCTGCTCGGGT 60.535 55.000 0.00 0.00 0.00 5.28
2143 2167 0.250295 TCTGTGGTTTTCTGCTCGGG 60.250 55.000 0.00 0.00 0.00 5.14
2144 2168 1.734465 GATCTGTGGTTTTCTGCTCGG 59.266 52.381 0.00 0.00 0.00 4.63
2145 2169 2.416747 TGATCTGTGGTTTTCTGCTCG 58.583 47.619 0.00 0.00 0.00 5.03
2146 2170 3.817647 AGTTGATCTGTGGTTTTCTGCTC 59.182 43.478 0.00 0.00 0.00 4.26
2147 2171 3.817647 GAGTTGATCTGTGGTTTTCTGCT 59.182 43.478 0.00 0.00 0.00 4.24
2148 2172 3.364366 CGAGTTGATCTGTGGTTTTCTGC 60.364 47.826 0.00 0.00 0.00 4.26
2149 2173 3.809832 ACGAGTTGATCTGTGGTTTTCTG 59.190 43.478 0.00 0.00 0.00 3.02
2150 2174 3.809832 CACGAGTTGATCTGTGGTTTTCT 59.190 43.478 0.00 0.00 32.38 2.52
2151 2175 3.607078 GCACGAGTTGATCTGTGGTTTTC 60.607 47.826 0.00 0.00 34.83 2.29
2152 2176 2.290641 GCACGAGTTGATCTGTGGTTTT 59.709 45.455 0.00 0.00 34.83 2.43
2153 2177 1.873591 GCACGAGTTGATCTGTGGTTT 59.126 47.619 0.00 0.00 34.83 3.27
2154 2178 1.512926 GCACGAGTTGATCTGTGGTT 58.487 50.000 0.00 0.00 34.83 3.67
2155 2179 0.667487 CGCACGAGTTGATCTGTGGT 60.667 55.000 0.00 0.00 34.83 4.16
2156 2180 0.667487 ACGCACGAGTTGATCTGTGG 60.667 55.000 0.00 0.00 34.83 4.17
2157 2181 1.139989 AACGCACGAGTTGATCTGTG 58.860 50.000 0.00 0.00 36.30 3.66
2158 2182 1.865865 AAACGCACGAGTTGATCTGT 58.134 45.000 0.00 0.00 34.14 3.41
2159 2183 2.220824 TCAAAACGCACGAGTTGATCTG 59.779 45.455 0.00 0.00 34.14 2.90
2160 2184 2.221055 GTCAAAACGCACGAGTTGATCT 59.779 45.455 13.32 0.00 34.14 2.75
2161 2185 2.560896 GTCAAAACGCACGAGTTGATC 58.439 47.619 13.32 0.00 34.14 2.92
2162 2186 1.070843 CGTCAAAACGCACGAGTTGAT 60.071 47.619 13.32 0.00 42.82 2.57
2163 2187 0.299300 CGTCAAAACGCACGAGTTGA 59.701 50.000 0.00 3.21 42.82 3.18
2164 2188 2.753416 CGTCAAAACGCACGAGTTG 58.247 52.632 0.00 0.72 42.82 3.16
2173 2197 3.676515 GGATATCTCCCGCGTCAAAACG 61.677 54.545 4.92 0.00 42.77 3.60
2174 2198 1.865340 GGATATCTCCCGCGTCAAAAC 59.135 52.381 4.92 0.00 35.28 2.43
2175 2199 1.483004 TGGATATCTCCCGCGTCAAAA 59.517 47.619 4.92 0.00 41.29 2.44
2176 2200 1.116308 TGGATATCTCCCGCGTCAAA 58.884 50.000 4.92 0.00 41.29 2.69
2177 2201 0.387929 GTGGATATCTCCCGCGTCAA 59.612 55.000 4.92 0.00 41.29 3.18
2178 2202 1.461091 GGTGGATATCTCCCGCGTCA 61.461 60.000 4.92 0.00 41.29 4.35
2179 2203 1.289380 GGTGGATATCTCCCGCGTC 59.711 63.158 4.92 0.00 41.29 5.19
2180 2204 0.832135 ATGGTGGATATCTCCCGCGT 60.832 55.000 4.92 0.00 41.29 6.01
2181 2205 0.108615 GATGGTGGATATCTCCCGCG 60.109 60.000 0.00 0.00 41.29 6.46
2182 2206 0.250513 GGATGGTGGATATCTCCCGC 59.749 60.000 2.05 0.00 41.29 6.13
2183 2207 1.944177 AGGATGGTGGATATCTCCCG 58.056 55.000 2.05 0.00 41.29 5.14
2184 2208 3.008485 GTCAAGGATGGTGGATATCTCCC 59.992 52.174 2.05 3.65 41.29 4.30
2185 2209 3.306364 CGTCAAGGATGGTGGATATCTCC 60.306 52.174 2.05 6.61 42.45 3.71
2186 2210 3.322254 ACGTCAAGGATGGTGGATATCTC 59.678 47.826 2.05 0.00 0.00 2.75
2187 2211 3.309296 ACGTCAAGGATGGTGGATATCT 58.691 45.455 2.05 0.00 0.00 1.98
2188 2212 3.654414 GACGTCAAGGATGGTGGATATC 58.346 50.000 11.55 0.00 0.00 1.63
2189 2213 2.035961 CGACGTCAAGGATGGTGGATAT 59.964 50.000 17.16 0.00 0.00 1.63
2190 2214 1.407618 CGACGTCAAGGATGGTGGATA 59.592 52.381 17.16 0.00 0.00 2.59
2191 2215 0.175760 CGACGTCAAGGATGGTGGAT 59.824 55.000 17.16 0.00 0.00 3.41
2192 2216 1.589630 CGACGTCAAGGATGGTGGA 59.410 57.895 17.16 0.00 0.00 4.02
2193 2217 2.100631 GCGACGTCAAGGATGGTGG 61.101 63.158 17.16 0.00 0.00 4.61
2194 2218 2.100631 GGCGACGTCAAGGATGGTG 61.101 63.158 17.16 0.00 0.00 4.17
2195 2219 1.827399 AAGGCGACGTCAAGGATGGT 61.827 55.000 17.16 0.00 0.00 3.55
2196 2220 1.079127 AAGGCGACGTCAAGGATGG 60.079 57.895 17.16 0.00 0.00 3.51
2197 2221 0.108615 AGAAGGCGACGTCAAGGATG 60.109 55.000 17.16 0.00 41.72 3.51
2198 2222 0.608640 AAGAAGGCGACGTCAAGGAT 59.391 50.000 17.16 0.00 41.72 3.24
2199 2223 0.391597 AAAGAAGGCGACGTCAAGGA 59.608 50.000 17.16 0.00 41.72 3.36
2200 2224 0.790814 GAAAGAAGGCGACGTCAAGG 59.209 55.000 17.16 0.00 41.72 3.61
2201 2225 1.497991 TGAAAGAAGGCGACGTCAAG 58.502 50.000 17.16 0.67 41.72 3.02
2202 2226 1.942677 TTGAAAGAAGGCGACGTCAA 58.057 45.000 17.16 0.00 41.72 3.18
2203 2227 3.671262 TTGAAAGAAGGCGACGTCA 57.329 47.368 17.16 0.00 41.72 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.