Multiple sequence alignment - TraesCS4A01G242700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G242700 chr4A 100.000 3632 0 0 1 3632 552697535 552701166 0.000000e+00 6708.0
1 TraesCS4A01G242700 chr4B 95.833 1536 52 10 1333 2866 67771628 67773153 0.000000e+00 2471.0
2 TraesCS4A01G242700 chr4B 90.455 1142 55 19 110 1216 67770510 67771632 0.000000e+00 1456.0
3 TraesCS4A01G242700 chr4B 86.667 225 29 1 2922 3146 67773153 67773376 7.790000e-62 248.0
4 TraesCS4A01G242700 chr4B 94.737 38 1 1 741 778 167958845 167958809 1.410000e-04 58.4
5 TraesCS4A01G242700 chr4D 93.030 1607 84 13 1547 3145 46292313 46290727 0.000000e+00 2322.0
6 TraesCS4A01G242700 chr4D 92.427 1228 50 14 1 1212 46294007 46292807 0.000000e+00 1712.0
7 TraesCS4A01G242700 chr4D 85.932 263 34 2 3147 3409 46290199 46289940 9.930000e-71 278.0
8 TraesCS4A01G242700 chr4D 92.353 170 8 4 1391 1556 46292783 46292615 1.690000e-58 237.0
9 TraesCS4A01G242700 chr3A 98.438 128 2 0 1212 1339 148651945 148651818 3.650000e-55 226.0
10 TraesCS4A01G242700 chr2B 97.692 130 3 0 1212 1341 58667110 58667239 1.310000e-54 224.0
11 TraesCS4A01G242700 chr2B 94.697 132 5 2 1214 1345 799758884 799759013 1.710000e-48 204.0
12 TraesCS4A01G242700 chr2B 77.181 149 30 4 1019 1165 85177903 85177757 2.320000e-12 84.2
13 TraesCS4A01G242700 chr5A 96.850 127 4 0 1212 1338 307440934 307440808 2.840000e-51 213.0
14 TraesCS4A01G242700 chr5A 96.094 128 4 1 1212 1338 86548589 86548462 1.320000e-49 207.0
15 TraesCS4A01G242700 chr5A 95.312 128 6 0 1214 1341 649376419 649376546 1.710000e-48 204.0
16 TraesCS4A01G242700 chr6A 96.094 128 5 0 1212 1339 570756476 570756603 3.670000e-50 209.0
17 TraesCS4A01G242700 chr1D 96.774 124 4 0 1214 1337 391969809 391969932 1.320000e-49 207.0
18 TraesCS4A01G242700 chr5B 95.349 129 5 1 1209 1336 45204895 45205023 1.710000e-48 204.0
19 TraesCS4A01G242700 chrUn 78.155 206 43 2 1772 1976 116282999 116283203 2.940000e-26 130.0
20 TraesCS4A01G242700 chr7B 78.155 206 43 2 1772 1976 339606246 339606450 2.940000e-26 130.0
21 TraesCS4A01G242700 chr7B 82.836 134 20 1 1022 1152 455272180 455272047 2.290000e-22 117.0
22 TraesCS4A01G242700 chr7B 77.108 166 31 7 997 1157 376430996 376431159 5.000000e-14 89.8
23 TraesCS4A01G242700 chr7D 77.670 206 44 2 1772 1976 296497294 296497498 1.370000e-24 124.0
24 TraesCS4A01G242700 chr7D 81.879 149 22 3 1003 1146 438368470 438368618 1.770000e-23 121.0
25 TraesCS4A01G242700 chr7D 76.506 166 32 7 997 1157 382255424 382255587 2.320000e-12 84.2
26 TraesCS4A01G242700 chr7A 83.212 137 20 1 1013 1146 489163067 489163203 4.920000e-24 122.0
27 TraesCS4A01G242700 chr7A 77.108 166 31 7 997 1157 430240153 430240316 5.000000e-14 89.8
28 TraesCS4A01G242700 chr2D 77.551 147 29 4 1019 1163 54487972 54487828 6.460000e-13 86.1
29 TraesCS4A01G242700 chr6B 85.000 80 12 0 1811 1890 710105908 710105829 8.360000e-12 82.4
30 TraesCS4A01G242700 chr2A 91.379 58 3 2 1013 1069 54882383 54882439 1.080000e-10 78.7
31 TraesCS4A01G242700 chr2A 94.118 51 1 2 1019 1068 54955471 54955422 3.890000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G242700 chr4A 552697535 552701166 3631 False 6708.000000 6708 100.0000 1 3632 1 chr4A.!!$F1 3631
1 TraesCS4A01G242700 chr4B 67770510 67773376 2866 False 1391.666667 2471 90.9850 110 3146 3 chr4B.!!$F1 3036
2 TraesCS4A01G242700 chr4D 46289940 46294007 4067 True 1137.250000 2322 90.9355 1 3409 4 chr4D.!!$R1 3408

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
628 666 0.386858 CACGAGACACCCACGTACAG 60.387 60.0 0.0 0.0 38.47 2.74 F
1287 1338 0.035176 GCAAGCCAAAATCCCTGCAA 59.965 50.0 0.0 0.0 0.00 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1940 2309 0.614979 AGCTGGTCTTCTCGCCCTTA 60.615 55.0 0.00 0.0 0.0 2.69 R
3282 4182 0.251386 TCTCTCTTCCCTCGTGCACT 60.251 55.0 16.19 0.0 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 75 9.672673 TCTTCAAAATGAAAGATAACTCCCTAG 57.327 33.333 0.00 0.00 35.73 3.02
74 77 9.449719 TTCAAAATGAAAGATAACTCCCTAGTC 57.550 33.333 0.00 0.00 32.71 2.59
75 78 8.047310 TCAAAATGAAAGATAACTCCCTAGTCC 58.953 37.037 0.00 0.00 33.75 3.85
76 79 6.502074 AATGAAAGATAACTCCCTAGTCCC 57.498 41.667 0.00 0.00 33.75 4.46
77 80 5.222278 TGAAAGATAACTCCCTAGTCCCT 57.778 43.478 0.00 0.00 33.75 4.20
78 81 6.351317 TGAAAGATAACTCCCTAGTCCCTA 57.649 41.667 0.00 0.00 33.75 3.53
79 82 6.374588 TGAAAGATAACTCCCTAGTCCCTAG 58.625 44.000 0.00 0.00 33.75 3.02
80 83 6.161705 TGAAAGATAACTCCCTAGTCCCTAGA 59.838 42.308 0.00 0.00 36.26 2.43
81 84 5.587760 AGATAACTCCCTAGTCCCTAGAC 57.412 47.826 0.00 0.00 43.89 2.59
82 85 4.354686 AGATAACTCCCTAGTCCCTAGACC 59.645 50.000 0.00 0.00 44.72 3.85
83 86 0.845337 ACTCCCTAGTCCCTAGACCG 59.155 60.000 0.00 0.00 44.72 4.79
87 90 0.885596 CCTAGTCCCTAGACCGCGAG 60.886 65.000 8.23 0.00 44.72 5.03
207 210 8.296799 TGTTGCATCTTTTGACATTGTTAATC 57.703 30.769 0.00 0.00 0.00 1.75
297 304 2.765705 ATTCCCCACGACCACCCTCT 62.766 60.000 0.00 0.00 0.00 3.69
334 361 9.053840 CCACCAATCTAGACGTACGATATATAT 57.946 37.037 24.41 6.72 0.00 0.86
353 380 5.845985 ATATAACGCATCTTGATTCACCG 57.154 39.130 0.00 0.00 0.00 4.94
377 404 0.874175 TCACTTTCACACGTGCGAGG 60.874 55.000 17.22 10.84 0.00 4.63
395 423 1.965930 GGTGCAAGCCGATCACACA 60.966 57.895 0.00 0.00 32.89 3.72
448 480 1.291184 TTGCGTGCCAATCGTCTCAG 61.291 55.000 0.00 0.00 0.00 3.35
455 487 1.941209 GCCAATCGTCTCAGCAACTCA 60.941 52.381 0.00 0.00 0.00 3.41
617 655 1.595929 GGCCGGAAAACACGAGACA 60.596 57.895 5.05 0.00 0.00 3.41
619 657 1.838568 GCCGGAAAACACGAGACACC 61.839 60.000 5.05 0.00 0.00 4.16
628 666 0.386858 CACGAGACACCCACGTACAG 60.387 60.000 0.00 0.00 38.47 2.74
629 667 0.535780 ACGAGACACCCACGTACAGA 60.536 55.000 0.00 0.00 38.47 3.41
701 739 4.819082 CGACCTTTTCGCCGGATA 57.181 55.556 5.05 0.00 41.87 2.59
736 774 0.682852 CGCCAATAATCCTCCCCGTA 59.317 55.000 0.00 0.00 0.00 4.02
847 886 2.452813 CGTACACATGTGCGCCCTC 61.453 63.158 25.68 8.71 45.94 4.30
869 908 6.033937 CCTCGTTGATGATGTATATAAGCACG 59.966 42.308 0.00 0.00 0.00 5.34
899 938 1.399440 CTTCTGCCATGGATCGTTGTG 59.601 52.381 18.40 0.00 0.00 3.33
998 1037 1.153168 CGCCGGAATCCAAGGTCAT 60.153 57.895 5.05 0.00 0.00 3.06
1174 1220 5.179555 CCAAGTAAGTGCTTAGTTCCAGTTC 59.820 44.000 8.58 0.00 36.77 3.01
1181 1227 3.326588 TGCTTAGTTCCAGTTCCAGCTAA 59.673 43.478 0.00 0.00 0.00 3.09
1208 1259 1.999735 CCGTTGCACATTCACTCGTAT 59.000 47.619 0.00 0.00 0.00 3.06
1214 1265 6.414079 GTTGCACATTCACTCGTATCATAAG 58.586 40.000 0.00 0.00 0.00 1.73
1215 1266 5.049828 TGCACATTCACTCGTATCATAAGG 58.950 41.667 0.00 0.00 0.00 2.69
1216 1267 4.449068 GCACATTCACTCGTATCATAAGGG 59.551 45.833 0.00 0.00 0.00 3.95
1217 1268 4.449068 CACATTCACTCGTATCATAAGGGC 59.551 45.833 0.00 0.00 0.00 5.19
1218 1269 4.345257 ACATTCACTCGTATCATAAGGGCT 59.655 41.667 0.00 0.00 0.00 5.19
1219 1270 5.163301 ACATTCACTCGTATCATAAGGGCTT 60.163 40.000 0.00 0.00 0.00 4.35
1220 1271 4.322080 TCACTCGTATCATAAGGGCTTG 57.678 45.455 0.00 0.00 0.00 4.01
1221 1272 3.704566 TCACTCGTATCATAAGGGCTTGT 59.295 43.478 0.00 0.00 0.00 3.16
1222 1273 4.161565 TCACTCGTATCATAAGGGCTTGTT 59.838 41.667 0.00 0.00 0.00 2.83
1223 1274 4.508124 CACTCGTATCATAAGGGCTTGTTC 59.492 45.833 0.00 0.00 0.00 3.18
1224 1275 3.713288 TCGTATCATAAGGGCTTGTTCG 58.287 45.455 0.00 0.00 0.00 3.95
1225 1276 2.800544 CGTATCATAAGGGCTTGTTCGG 59.199 50.000 0.00 0.00 0.00 4.30
1226 1277 3.740141 CGTATCATAAGGGCTTGTTCGGT 60.740 47.826 0.00 0.00 0.00 4.69
1227 1278 2.871096 TCATAAGGGCTTGTTCGGTT 57.129 45.000 0.00 0.00 0.00 4.44
1228 1279 2.432444 TCATAAGGGCTTGTTCGGTTG 58.568 47.619 0.00 0.00 0.00 3.77
1229 1280 2.039216 TCATAAGGGCTTGTTCGGTTGA 59.961 45.455 0.00 0.00 0.00 3.18
1230 1281 2.178912 TAAGGGCTTGTTCGGTTGAG 57.821 50.000 0.00 0.00 0.00 3.02
1231 1282 0.472471 AAGGGCTTGTTCGGTTGAGA 59.528 50.000 0.00 0.00 0.00 3.27
1232 1283 0.693049 AGGGCTTGTTCGGTTGAGAT 59.307 50.000 0.00 0.00 0.00 2.75
1233 1284 0.804989 GGGCTTGTTCGGTTGAGATG 59.195 55.000 0.00 0.00 0.00 2.90
1234 1285 0.804989 GGCTTGTTCGGTTGAGATGG 59.195 55.000 0.00 0.00 0.00 3.51
1235 1286 1.610624 GGCTTGTTCGGTTGAGATGGA 60.611 52.381 0.00 0.00 0.00 3.41
1236 1287 2.359900 GCTTGTTCGGTTGAGATGGAT 58.640 47.619 0.00 0.00 0.00 3.41
1237 1288 2.749621 GCTTGTTCGGTTGAGATGGATT 59.250 45.455 0.00 0.00 0.00 3.01
1238 1289 3.191371 GCTTGTTCGGTTGAGATGGATTT 59.809 43.478 0.00 0.00 0.00 2.17
1239 1290 4.726416 CTTGTTCGGTTGAGATGGATTTG 58.274 43.478 0.00 0.00 0.00 2.32
1240 1291 4.014569 TGTTCGGTTGAGATGGATTTGA 57.985 40.909 0.00 0.00 0.00 2.69
1241 1292 4.393834 TGTTCGGTTGAGATGGATTTGAA 58.606 39.130 0.00 0.00 0.00 2.69
1242 1293 4.455533 TGTTCGGTTGAGATGGATTTGAAG 59.544 41.667 0.00 0.00 0.00 3.02
1243 1294 3.609853 TCGGTTGAGATGGATTTGAAGG 58.390 45.455 0.00 0.00 0.00 3.46
1244 1295 2.684881 CGGTTGAGATGGATTTGAAGGG 59.315 50.000 0.00 0.00 0.00 3.95
1245 1296 3.026694 GGTTGAGATGGATTTGAAGGGG 58.973 50.000 0.00 0.00 0.00 4.79
1246 1297 3.309121 GGTTGAGATGGATTTGAAGGGGA 60.309 47.826 0.00 0.00 0.00 4.81
1247 1298 4.540715 GTTGAGATGGATTTGAAGGGGAT 58.459 43.478 0.00 0.00 0.00 3.85
1248 1299 4.886755 TGAGATGGATTTGAAGGGGATT 57.113 40.909 0.00 0.00 0.00 3.01
1249 1300 4.539726 TGAGATGGATTTGAAGGGGATTG 58.460 43.478 0.00 0.00 0.00 2.67
1250 1301 4.230272 TGAGATGGATTTGAAGGGGATTGA 59.770 41.667 0.00 0.00 0.00 2.57
1251 1302 4.801164 AGATGGATTTGAAGGGGATTGAG 58.199 43.478 0.00 0.00 0.00 3.02
1252 1303 3.386932 TGGATTTGAAGGGGATTGAGG 57.613 47.619 0.00 0.00 0.00 3.86
1253 1304 2.024080 TGGATTTGAAGGGGATTGAGGG 60.024 50.000 0.00 0.00 0.00 4.30
1254 1305 2.670939 GATTTGAAGGGGATTGAGGGG 58.329 52.381 0.00 0.00 0.00 4.79
1255 1306 0.709992 TTTGAAGGGGATTGAGGGGG 59.290 55.000 0.00 0.00 0.00 5.40
1256 1307 0.178816 TTGAAGGGGATTGAGGGGGA 60.179 55.000 0.00 0.00 0.00 4.81
1257 1308 0.178816 TGAAGGGGATTGAGGGGGAA 60.179 55.000 0.00 0.00 0.00 3.97
1258 1309 1.235756 GAAGGGGATTGAGGGGGAAT 58.764 55.000 0.00 0.00 0.00 3.01
1259 1310 1.575788 GAAGGGGATTGAGGGGGAATT 59.424 52.381 0.00 0.00 0.00 2.17
1260 1311 2.624846 AGGGGATTGAGGGGGAATTA 57.375 50.000 0.00 0.00 0.00 1.40
1261 1312 2.885119 AGGGGATTGAGGGGGAATTAA 58.115 47.619 0.00 0.00 0.00 1.40
1262 1313 3.426933 AGGGGATTGAGGGGGAATTAAT 58.573 45.455 0.00 0.00 0.00 1.40
1263 1314 3.402708 AGGGGATTGAGGGGGAATTAATC 59.597 47.826 0.00 0.00 0.00 1.75
1274 1325 1.688735 GGAATTAATCCCCTGCAAGCC 59.311 52.381 0.00 0.00 43.00 4.35
1275 1326 2.387757 GAATTAATCCCCTGCAAGCCA 58.612 47.619 0.00 0.00 0.00 4.75
1276 1327 2.548464 ATTAATCCCCTGCAAGCCAA 57.452 45.000 0.00 0.00 0.00 4.52
1277 1328 2.317371 TTAATCCCCTGCAAGCCAAA 57.683 45.000 0.00 0.00 0.00 3.28
1278 1329 2.317371 TAATCCCCTGCAAGCCAAAA 57.683 45.000 0.00 0.00 0.00 2.44
1279 1330 1.660242 AATCCCCTGCAAGCCAAAAT 58.340 45.000 0.00 0.00 0.00 1.82
1280 1331 1.197812 ATCCCCTGCAAGCCAAAATC 58.802 50.000 0.00 0.00 0.00 2.17
1281 1332 0.904394 TCCCCTGCAAGCCAAAATCC 60.904 55.000 0.00 0.00 0.00 3.01
1282 1333 1.598517 CCCTGCAAGCCAAAATCCC 59.401 57.895 0.00 0.00 0.00 3.85
1283 1334 0.906282 CCCTGCAAGCCAAAATCCCT 60.906 55.000 0.00 0.00 0.00 4.20
1284 1335 0.248289 CCTGCAAGCCAAAATCCCTG 59.752 55.000 0.00 0.00 0.00 4.45
1285 1336 0.390735 CTGCAAGCCAAAATCCCTGC 60.391 55.000 0.00 0.00 0.00 4.85
1286 1337 1.120184 TGCAAGCCAAAATCCCTGCA 61.120 50.000 0.00 0.00 0.00 4.41
1287 1338 0.035176 GCAAGCCAAAATCCCTGCAA 59.965 50.000 0.00 0.00 0.00 4.08
1288 1339 1.542987 GCAAGCCAAAATCCCTGCAAA 60.543 47.619 0.00 0.00 0.00 3.68
1289 1340 2.876892 GCAAGCCAAAATCCCTGCAAAT 60.877 45.455 0.00 0.00 0.00 2.32
1290 1341 3.004862 CAAGCCAAAATCCCTGCAAATC 58.995 45.455 0.00 0.00 0.00 2.17
1291 1342 2.543635 AGCCAAAATCCCTGCAAATCT 58.456 42.857 0.00 0.00 0.00 2.40
1292 1343 2.498885 AGCCAAAATCCCTGCAAATCTC 59.501 45.455 0.00 0.00 0.00 2.75
1293 1344 2.419159 GCCAAAATCCCTGCAAATCTCC 60.419 50.000 0.00 0.00 0.00 3.71
1294 1345 3.102204 CCAAAATCCCTGCAAATCTCCT 58.898 45.455 0.00 0.00 0.00 3.69
1295 1346 3.516700 CCAAAATCCCTGCAAATCTCCTT 59.483 43.478 0.00 0.00 0.00 3.36
1296 1347 4.382362 CCAAAATCCCTGCAAATCTCCTTC 60.382 45.833 0.00 0.00 0.00 3.46
1297 1348 3.744940 AATCCCTGCAAATCTCCTTCA 57.255 42.857 0.00 0.00 0.00 3.02
1298 1349 3.744940 ATCCCTGCAAATCTCCTTCAA 57.255 42.857 0.00 0.00 0.00 2.69
1299 1350 3.744940 TCCCTGCAAATCTCCTTCAAT 57.255 42.857 0.00 0.00 0.00 2.57
1300 1351 3.624777 TCCCTGCAAATCTCCTTCAATC 58.375 45.455 0.00 0.00 0.00 2.67
1301 1352 2.692041 CCCTGCAAATCTCCTTCAATCC 59.308 50.000 0.00 0.00 0.00 3.01
1302 1353 3.359033 CCTGCAAATCTCCTTCAATCCA 58.641 45.455 0.00 0.00 0.00 3.41
1303 1354 3.129988 CCTGCAAATCTCCTTCAATCCAC 59.870 47.826 0.00 0.00 0.00 4.02
1304 1355 3.091545 TGCAAATCTCCTTCAATCCACC 58.908 45.455 0.00 0.00 0.00 4.61
1305 1356 3.245371 TGCAAATCTCCTTCAATCCACCT 60.245 43.478 0.00 0.00 0.00 4.00
1306 1357 3.129988 GCAAATCTCCTTCAATCCACCTG 59.870 47.826 0.00 0.00 0.00 4.00
1307 1358 3.659183 AATCTCCTTCAATCCACCTGG 57.341 47.619 0.00 0.00 0.00 4.45
1308 1359 1.289160 TCTCCTTCAATCCACCTGGG 58.711 55.000 0.00 0.00 35.41 4.45
1309 1360 0.257039 CTCCTTCAATCCACCTGGGG 59.743 60.000 0.00 0.00 37.22 4.96
1310 1361 0.477597 TCCTTCAATCCACCTGGGGT 60.478 55.000 0.00 0.00 37.22 4.95
1311 1362 0.409484 CCTTCAATCCACCTGGGGTT 59.591 55.000 0.00 0.00 42.20 4.11
1314 1365 3.190349 AATCCACCTGGGGTTGGG 58.810 61.111 0.00 0.00 39.05 4.12
1315 1366 1.467190 AATCCACCTGGGGTTGGGA 60.467 57.895 0.00 0.00 39.05 4.37
1316 1367 0.855400 AATCCACCTGGGGTTGGGAT 60.855 55.000 0.00 3.60 39.05 3.85
1317 1368 0.855400 ATCCACCTGGGGTTGGGATT 60.855 55.000 0.00 0.00 35.72 3.01
1318 1369 0.178828 TCCACCTGGGGTTGGGATTA 60.179 55.000 0.00 0.00 37.22 1.75
1319 1370 0.707616 CCACCTGGGGTTGGGATTAA 59.292 55.000 0.00 0.00 31.02 1.40
1320 1371 1.618616 CCACCTGGGGTTGGGATTAAC 60.619 57.143 0.00 0.00 31.02 2.01
1330 1381 3.926821 TTGGGATTAACCGAACAAAGC 57.073 42.857 0.00 0.00 40.11 3.51
1331 1382 2.164338 TGGGATTAACCGAACAAAGCC 58.836 47.619 0.00 0.00 40.11 4.35
1332 1383 2.224917 TGGGATTAACCGAACAAAGCCT 60.225 45.455 0.00 0.00 40.11 4.58
1333 1384 3.009253 TGGGATTAACCGAACAAAGCCTA 59.991 43.478 0.00 0.00 40.11 3.93
1334 1385 4.011698 GGGATTAACCGAACAAAGCCTAA 58.988 43.478 0.00 0.00 40.11 2.69
1346 1397 4.804597 ACAAAGCCTAAGGGAAAGAAACT 58.195 39.130 0.00 0.00 33.58 2.66
1366 1417 8.553696 AGAAACTTGATTTGAATTTGTGCAATC 58.446 29.630 0.00 0.00 0.00 2.67
1376 1427 3.667497 TTTGTGCAATCCGCCAATTAA 57.333 38.095 0.00 0.00 41.33 1.40
1377 1428 2.645730 TGTGCAATCCGCCAATTAAC 57.354 45.000 0.00 0.00 41.33 2.01
1381 1432 1.797348 GCAATCCGCCAATTAACCACG 60.797 52.381 0.00 0.00 32.94 4.94
1412 1463 1.879380 TGTGCTCGTTCCTGGATTTTG 59.121 47.619 0.00 0.00 0.00 2.44
1494 1548 2.890945 ACCATCTTGTTTACTTGTGGCC 59.109 45.455 0.00 0.00 0.00 5.36
1563 1930 8.839343 CCTAGTTGATAACATGCACATATTCAA 58.161 33.333 0.00 0.00 0.00 2.69
1631 1998 8.797438 AGTTACTTAGGCGTACTAAAACTTAGT 58.203 33.333 4.59 4.59 38.59 2.24
1632 1999 9.066939 GTTACTTAGGCGTACTAAAACTTAGTC 57.933 37.037 2.42 0.00 40.97 2.59
1639 2006 4.485335 CGTACTAAAACTTAGTCGTCGTCG 59.515 45.833 2.42 0.00 38.55 5.12
1694 2061 2.264813 CGACCTACGTACATTGGTTGG 58.735 52.381 9.98 0.65 37.22 3.77
1723 2090 5.645929 TGATGGATGTACGTGCACTAAAAAT 59.354 36.000 16.19 0.12 0.00 1.82
1925 2294 7.051000 GCATGAAGAAAACCCTAGTCTTCTAT 58.949 38.462 16.60 8.98 44.95 1.98
1940 2309 1.547099 TCTATGGAGGTAGGGCTCCT 58.453 55.000 0.00 0.00 40.28 3.69
2024 2393 7.463431 ACAAACCCAACAAGGTATACATAGAA 58.537 34.615 5.01 0.00 40.05 2.10
2214 2588 0.036732 TGAAGATGAGGCACCCACAC 59.963 55.000 0.00 0.00 0.00 3.82
2226 2600 4.742201 CCACACGACAGCCCCGAG 62.742 72.222 0.00 0.00 0.00 4.63
2247 2621 1.002624 GGACTCCCCATGCAACGAA 60.003 57.895 0.00 0.00 34.14 3.85
2302 2676 3.531207 TCTCCTCCATGCTCGGCG 61.531 66.667 0.00 0.00 0.00 6.46
2538 2912 3.664223 GAGAGACGTCGGCGGTGAC 62.664 68.421 16.39 1.88 43.45 3.67
2633 3007 4.162320 GTCCACATGGAGAACCTTCTGATA 59.838 45.833 0.00 0.00 46.49 2.15
2676 3050 8.736244 GCCTGAATAACAAGGAAAAGTAATACA 58.264 33.333 0.00 0.00 0.00 2.29
2812 3186 3.517901 TGGGTTCGGTTGATCTATGTCTT 59.482 43.478 0.00 0.00 0.00 3.01
2894 3269 5.235616 TGTCTTTTTCACCGACAGTAACATC 59.764 40.000 0.00 0.00 33.15 3.06
2909 3284 7.450074 ACAGTAACATCACTTTAACATGAGGA 58.550 34.615 0.00 0.00 31.25 3.71
2912 3287 4.253685 ACATCACTTTAACATGAGGACCG 58.746 43.478 0.00 0.00 31.25 4.79
2918 3293 1.037493 TAACATGAGGACCGCGCTAT 58.963 50.000 5.56 0.00 0.00 2.97
2920 3295 0.314302 ACATGAGGACCGCGCTATAC 59.686 55.000 5.56 0.00 0.00 1.47
2964 3339 4.833478 AAGATCATGCAGGTAGACAACT 57.167 40.909 0.00 0.00 0.00 3.16
2970 3345 1.270094 TGCAGGTAGACAACTGTTCGG 60.270 52.381 0.00 0.00 37.07 4.30
2975 3350 2.582687 GTAGACAACTGTTCGGTCTCG 58.417 52.381 14.52 0.00 41.74 4.04
3001 3376 4.077300 TGGAGCAACTGGATCATATCAC 57.923 45.455 0.00 0.00 32.12 3.06
3008 3383 7.455891 AGCAACTGGATCATATCACATCATTA 58.544 34.615 0.00 0.00 0.00 1.90
3049 3424 3.361158 CGGTCGGCCATTGCAACA 61.361 61.111 6.96 0.00 40.13 3.33
3051 3426 2.126888 GTCGGCCATTGCAACACG 60.127 61.111 0.00 4.34 40.13 4.49
3054 3429 2.699768 CGGCCATTGCAACACGGAT 61.700 57.895 14.05 0.00 40.13 4.18
3080 3455 3.352447 CGGTCTCTCATCGCAACAT 57.648 52.632 0.00 0.00 0.00 2.71
3081 3456 0.926155 CGGTCTCTCATCGCAACATG 59.074 55.000 0.00 0.00 0.00 3.21
3091 3466 1.539157 TCGCAACATGGGCAACATTA 58.461 45.000 11.48 0.00 37.84 1.90
3109 3484 3.270944 TGGTCCCCCATTGCAACT 58.729 55.556 0.00 0.00 35.17 3.16
3114 3489 1.076777 CCCCCATTGCAACTCGGAT 60.077 57.895 0.00 0.00 0.00 4.18
3116 3491 1.386525 CCCCATTGCAACTCGGATGG 61.387 60.000 0.00 4.14 38.98 3.51
3118 3493 1.314534 CCATTGCAACTCGGATGGCA 61.315 55.000 0.00 0.00 33.34 4.92
3126 3501 0.038166 ACTCGGATGGCATTGTGGTT 59.962 50.000 0.00 0.00 0.00 3.67
3141 3516 2.282745 GTTGCCTTGCAGCCCTCT 60.283 61.111 0.00 0.00 40.61 3.69
3143 3518 3.873679 TTGCCTTGCAGCCCTCTGG 62.874 63.158 0.00 0.00 40.61 3.86
3161 4061 2.796617 CAGCACGAAAAAGCGCCG 60.797 61.111 2.29 1.74 35.48 6.46
3165 4065 3.723348 ACGAAAAAGCGCCGCCTC 61.723 61.111 4.98 0.00 33.86 4.70
3236 4136 1.826720 CAGTACCTTTGCCATTGCCAT 59.173 47.619 0.00 0.00 36.33 4.40
3237 4137 2.234414 CAGTACCTTTGCCATTGCCATT 59.766 45.455 0.00 0.00 36.33 3.16
3238 4138 3.446873 CAGTACCTTTGCCATTGCCATTA 59.553 43.478 0.00 0.00 36.33 1.90
3239 4139 4.099881 CAGTACCTTTGCCATTGCCATTAT 59.900 41.667 0.00 0.00 36.33 1.28
3242 4142 3.118665 ACCTTTGCCATTGCCATTATCAC 60.119 43.478 0.00 0.00 36.33 3.06
3243 4143 3.460103 CTTTGCCATTGCCATTATCACC 58.540 45.455 0.00 0.00 36.33 4.02
3253 4153 1.541233 CCATTATCACCTGTCGCCCTC 60.541 57.143 0.00 0.00 0.00 4.30
3260 4160 3.790437 CTGTCGCCCTCCAGCCAT 61.790 66.667 0.00 0.00 0.00 4.40
3271 4171 3.285523 CCAGCCATGGCGGTTGTTG 62.286 63.158 31.08 22.13 44.26 3.33
3310 4210 2.777692 GAGGGAAGAGAGAGAGGAGAGA 59.222 54.545 0.00 0.00 0.00 3.10
3313 4213 3.433740 GGGAAGAGAGAGAGGAGAGACTC 60.434 56.522 0.00 0.00 37.77 3.36
3340 4240 1.346722 AGTAACAACTCACCGGGGAAG 59.653 52.381 8.34 4.55 0.00 3.46
3341 4241 0.688487 TAACAACTCACCGGGGAAGG 59.312 55.000 8.34 0.00 37.30 3.46
3342 4242 2.064242 AACAACTCACCGGGGAAGGG 62.064 60.000 8.34 1.67 35.02 3.95
3343 4243 2.933834 AACTCACCGGGGAAGGGG 60.934 66.667 8.34 0.00 35.56 4.79
3380 4280 4.221482 AGAAGAATTGCAAAGGGGATTGAC 59.779 41.667 1.71 0.00 31.84 3.18
3391 4291 1.132500 GGGATTGACTGGAGGTAGGG 58.868 60.000 0.00 0.00 0.00 3.53
3392 4292 0.470341 GGATTGACTGGAGGTAGGGC 59.530 60.000 0.00 0.00 0.00 5.19
3395 4295 0.116342 TTGACTGGAGGTAGGGCAGA 59.884 55.000 0.00 0.00 0.00 4.26
3398 4298 1.840635 GACTGGAGGTAGGGCAGAATT 59.159 52.381 0.00 0.00 0.00 2.17
3409 4309 0.528684 GGCAGAATTCGGTCGAGGAG 60.529 60.000 7.44 0.00 0.00 3.69
3410 4310 0.456221 GCAGAATTCGGTCGAGGAGA 59.544 55.000 7.44 0.00 0.00 3.71
3411 4311 1.535015 GCAGAATTCGGTCGAGGAGAG 60.535 57.143 7.44 0.00 0.00 3.20
3412 4312 0.741915 AGAATTCGGTCGAGGAGAGC 59.258 55.000 0.00 0.00 43.53 4.09
3413 4313 0.741915 GAATTCGGTCGAGGAGAGCT 59.258 55.000 0.00 0.00 44.71 4.09
3414 4314 1.948145 GAATTCGGTCGAGGAGAGCTA 59.052 52.381 0.00 0.00 44.71 3.32
3415 4315 1.600023 ATTCGGTCGAGGAGAGCTAG 58.400 55.000 0.00 0.00 44.71 3.42
3416 4316 0.540454 TTCGGTCGAGGAGAGCTAGA 59.460 55.000 0.00 0.00 44.71 2.43
3417 4317 0.759959 TCGGTCGAGGAGAGCTAGAT 59.240 55.000 0.00 0.00 44.71 1.98
3418 4318 0.871722 CGGTCGAGGAGAGCTAGATG 59.128 60.000 0.00 0.00 44.71 2.90
3419 4319 1.541452 CGGTCGAGGAGAGCTAGATGA 60.541 57.143 0.00 0.00 44.71 2.92
3420 4320 1.877443 GGTCGAGGAGAGCTAGATGAC 59.123 57.143 0.00 0.00 43.62 3.06
3421 4321 1.877443 GTCGAGGAGAGCTAGATGACC 59.123 57.143 0.00 0.00 0.00 4.02
3422 4322 1.490910 TCGAGGAGAGCTAGATGACCA 59.509 52.381 0.00 0.00 0.00 4.02
3423 4323 2.107378 TCGAGGAGAGCTAGATGACCAT 59.893 50.000 0.00 0.00 0.00 3.55
3424 4324 2.890311 CGAGGAGAGCTAGATGACCATT 59.110 50.000 0.00 0.00 0.00 3.16
3425 4325 3.320541 CGAGGAGAGCTAGATGACCATTT 59.679 47.826 0.00 0.00 0.00 2.32
3426 4326 4.202202 CGAGGAGAGCTAGATGACCATTTT 60.202 45.833 0.00 0.00 0.00 1.82
3427 4327 5.010112 CGAGGAGAGCTAGATGACCATTTTA 59.990 44.000 0.00 0.00 0.00 1.52
3428 4328 6.295011 CGAGGAGAGCTAGATGACCATTTTAT 60.295 42.308 0.00 0.00 0.00 1.40
3429 4329 6.767456 AGGAGAGCTAGATGACCATTTTATG 58.233 40.000 0.00 0.00 0.00 1.90
3430 4330 6.328672 AGGAGAGCTAGATGACCATTTTATGT 59.671 38.462 0.00 0.00 0.00 2.29
3431 4331 7.510685 AGGAGAGCTAGATGACCATTTTATGTA 59.489 37.037 0.00 0.00 0.00 2.29
3432 4332 8.317679 GGAGAGCTAGATGACCATTTTATGTAT 58.682 37.037 0.00 0.00 0.00 2.29
3433 4333 9.717942 GAGAGCTAGATGACCATTTTATGTATT 57.282 33.333 0.00 0.00 0.00 1.89
3534 4434 9.233649 TCACATTTTAAAAGATACCCATAACGT 57.766 29.630 6.79 0.00 0.00 3.99
3535 4435 9.284594 CACATTTTAAAAGATACCCATAACGTG 57.715 33.333 6.79 0.00 0.00 4.49
3536 4436 9.016438 ACATTTTAAAAGATACCCATAACGTGT 57.984 29.630 6.79 0.00 0.00 4.49
3537 4437 9.498307 CATTTTAAAAGATACCCATAACGTGTC 57.502 33.333 6.79 0.00 0.00 3.67
3538 4438 8.851541 TTTTAAAAGATACCCATAACGTGTCT 57.148 30.769 0.00 0.00 33.62 3.41
3539 4439 9.941325 TTTTAAAAGATACCCATAACGTGTCTA 57.059 29.630 0.00 0.00 31.29 2.59
3540 4440 9.941325 TTTAAAAGATACCCATAACGTGTCTAA 57.059 29.630 0.00 0.00 31.29 2.10
3541 4441 9.941325 TTAAAAGATACCCATAACGTGTCTAAA 57.059 29.630 0.00 0.00 31.29 1.85
3542 4442 8.851541 AAAAGATACCCATAACGTGTCTAAAA 57.148 30.769 0.00 0.00 31.29 1.52
3543 4443 8.851541 AAAGATACCCATAACGTGTCTAAAAA 57.148 30.769 0.00 0.00 31.29 1.94
3544 4444 8.488651 AAGATACCCATAACGTGTCTAAAAAG 57.511 34.615 0.00 0.00 31.29 2.27
3545 4445 7.618137 AGATACCCATAACGTGTCTAAAAAGT 58.382 34.615 0.00 0.00 30.81 2.66
3546 4446 7.763071 AGATACCCATAACGTGTCTAAAAAGTC 59.237 37.037 0.00 0.00 30.81 3.01
3547 4447 5.613329 ACCCATAACGTGTCTAAAAAGTCA 58.387 37.500 0.00 0.00 0.00 3.41
3548 4448 6.235664 ACCCATAACGTGTCTAAAAAGTCAT 58.764 36.000 0.00 0.00 0.00 3.06
3549 4449 6.370718 ACCCATAACGTGTCTAAAAAGTCATC 59.629 38.462 0.00 0.00 0.00 2.92
3550 4450 6.370442 CCCATAACGTGTCTAAAAAGTCATCA 59.630 38.462 0.00 0.00 0.00 3.07
3551 4451 7.065803 CCCATAACGTGTCTAAAAAGTCATCAT 59.934 37.037 0.00 0.00 0.00 2.45
3552 4452 7.904977 CCATAACGTGTCTAAAAAGTCATCATG 59.095 37.037 0.00 0.00 0.00 3.07
3553 4453 6.861065 AACGTGTCTAAAAAGTCATCATGT 57.139 33.333 0.00 0.00 0.00 3.21
3554 4454 6.228273 ACGTGTCTAAAAAGTCATCATGTG 57.772 37.500 0.00 0.00 0.00 3.21
3555 4455 5.179368 ACGTGTCTAAAAAGTCATCATGTGG 59.821 40.000 0.00 0.00 0.00 4.17
3556 4456 5.179368 CGTGTCTAAAAAGTCATCATGTGGT 59.821 40.000 0.00 0.00 0.00 4.16
3557 4457 6.373779 GTGTCTAAAAAGTCATCATGTGGTG 58.626 40.000 0.00 0.00 0.00 4.17
3558 4458 6.017109 GTGTCTAAAAAGTCATCATGTGGTGT 60.017 38.462 0.00 0.00 0.00 4.16
3559 4459 6.545666 TGTCTAAAAAGTCATCATGTGGTGTT 59.454 34.615 0.00 0.00 0.00 3.32
3560 4460 7.717436 TGTCTAAAAAGTCATCATGTGGTGTTA 59.283 33.333 0.00 0.00 0.00 2.41
3561 4461 8.564574 GTCTAAAAAGTCATCATGTGGTGTTAA 58.435 33.333 0.00 0.00 0.00 2.01
3562 4462 9.126151 TCTAAAAAGTCATCATGTGGTGTTAAA 57.874 29.630 0.00 0.00 0.00 1.52
3563 4463 9.743057 CTAAAAAGTCATCATGTGGTGTTAAAA 57.257 29.630 0.00 0.00 0.00 1.52
3568 4468 9.691362 AAGTCATCATGTGGTGTTAAAATAAAC 57.309 29.630 0.00 0.00 0.00 2.01
3569 4469 9.077885 AGTCATCATGTGGTGTTAAAATAAACT 57.922 29.630 0.00 0.00 0.00 2.66
3575 4475 8.859156 CATGTGGTGTTAAAATAAACTATGTGC 58.141 33.333 0.00 0.00 0.00 4.57
3576 4476 7.941919 TGTGGTGTTAAAATAAACTATGTGCA 58.058 30.769 0.00 0.00 0.00 4.57
3577 4477 8.414003 TGTGGTGTTAAAATAAACTATGTGCAA 58.586 29.630 0.00 0.00 0.00 4.08
3578 4478 9.418045 GTGGTGTTAAAATAAACTATGTGCAAT 57.582 29.630 0.00 0.00 0.00 3.56
3579 4479 9.988815 TGGTGTTAAAATAAACTATGTGCAATT 57.011 25.926 0.00 0.00 0.00 2.32
3606 4506 9.995003 TTTTTCAAAATGTTCATAGTAGCCAAT 57.005 25.926 0.00 0.00 0.00 3.16
3616 4516 9.019656 TGTTCATAGTAGCCAATAAATGTTTGT 57.980 29.630 0.00 0.00 0.00 2.83
3617 4517 9.503427 GTTCATAGTAGCCAATAAATGTTTGTC 57.497 33.333 0.00 0.00 0.00 3.18
3618 4518 8.800370 TCATAGTAGCCAATAAATGTTTGTCA 57.200 30.769 0.00 0.00 0.00 3.58
3619 4519 8.673711 TCATAGTAGCCAATAAATGTTTGTCAC 58.326 33.333 0.00 0.00 0.00 3.67
3620 4520 6.892658 AGTAGCCAATAAATGTTTGTCACA 57.107 33.333 0.00 0.00 40.71 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 78 2.515996 TTTTGCCCTCGCGGTCTAGG 62.516 60.000 6.13 5.25 38.08 3.02
76 79 0.462047 ATTTTGCCCTCGCGGTCTAG 60.462 55.000 6.13 0.00 38.08 2.43
77 80 0.742990 CATTTTGCCCTCGCGGTCTA 60.743 55.000 6.13 0.00 38.08 2.59
78 81 2.040544 CATTTTGCCCTCGCGGTCT 61.041 57.895 6.13 0.00 38.08 3.85
79 82 2.038269 TCATTTTGCCCTCGCGGTC 61.038 57.895 6.13 0.00 38.08 4.79
80 83 2.033448 TCATTTTGCCCTCGCGGT 59.967 55.556 6.13 0.00 38.08 5.68
81 84 1.861542 TTGTCATTTTGCCCTCGCGG 61.862 55.000 6.13 0.00 38.08 6.46
82 85 0.171007 ATTGTCATTTTGCCCTCGCG 59.829 50.000 0.00 0.00 38.08 5.87
83 86 1.994779 CAATTGTCATTTTGCCCTCGC 59.005 47.619 0.00 0.00 0.00 5.03
87 90 2.615240 GGGACCAATTGTCATTTTGCCC 60.615 50.000 4.43 0.00 46.38 5.36
89 92 3.399440 TGGGACCAATTGTCATTTTGC 57.601 42.857 4.43 0.00 46.38 3.68
93 96 6.933514 ATACTTTTGGGACCAATTGTCATT 57.066 33.333 4.36 0.00 46.38 2.57
106 109 6.448006 CATCGAGTAGGAGTATACTTTTGGG 58.552 44.000 6.88 0.00 36.13 4.12
297 304 2.081425 GATTGGTGGTTGCGGTGCAA 62.081 55.000 0.00 0.00 46.80 4.08
334 361 1.663643 GCGGTGAATCAAGATGCGTTA 59.336 47.619 0.00 0.00 0.00 3.18
335 362 0.447801 GCGGTGAATCAAGATGCGTT 59.552 50.000 0.00 0.00 0.00 4.84
336 363 1.369091 GGCGGTGAATCAAGATGCGT 61.369 55.000 0.00 0.00 0.00 5.24
353 380 0.304705 CACGTGTGAAAGTGACTGGC 59.695 55.000 7.58 0.00 40.56 4.85
377 404 1.308069 ATGTGTGATCGGCTTGCACC 61.308 55.000 0.00 0.00 0.00 5.01
395 423 2.023741 CGTCGGCGCTACACGTAT 59.976 61.111 7.64 0.00 46.11 3.06
423 455 0.447406 CGATTGGCACGCAATCAGAA 59.553 50.000 12.68 0.00 38.57 3.02
448 480 2.864343 ACGACACTGTACTTTGAGTTGC 59.136 45.455 0.00 0.00 0.00 4.17
455 487 5.332808 GCAACGAATTACGACACTGTACTTT 60.333 40.000 0.00 0.00 45.77 2.66
617 655 0.252103 ATGGGTCTCTGTACGTGGGT 60.252 55.000 0.00 0.00 0.00 4.51
619 657 0.460284 GCATGGGTCTCTGTACGTGG 60.460 60.000 0.00 0.00 0.00 4.94
628 666 2.487532 GGCTGCATGCATGGGTCTC 61.488 63.158 27.34 11.23 45.15 3.36
629 667 2.441532 GGCTGCATGCATGGGTCT 60.442 61.111 27.34 0.00 45.15 3.85
736 774 0.036306 CAACCACGGCTAGGAAAGGT 59.964 55.000 0.00 0.00 0.00 3.50
847 886 5.541910 GCGTGCTTATATACATCATCAACG 58.458 41.667 0.00 0.00 0.00 4.10
869 908 1.965754 ATGGCAGAAGGAGAGACCGC 61.966 60.000 0.00 0.00 44.74 5.68
899 938 2.820479 CTCAGCTCAGCAGGCAGC 60.820 66.667 0.00 0.00 46.19 5.25
990 1029 1.142465 CCCTCCTCCATCATGACCTTG 59.858 57.143 0.00 0.00 0.00 3.61
998 1037 1.694169 GGAAGGCCCTCCTCCATCA 60.694 63.158 13.67 0.00 43.40 3.07
1118 1164 0.994995 CTCGCACTTGTTGAGATCGG 59.005 55.000 0.00 0.00 33.01 4.18
1174 1220 1.668419 CAACGGGAAGGATTAGCTGG 58.332 55.000 0.00 0.00 0.00 4.85
1181 1227 1.271871 TGAATGTGCAACGGGAAGGAT 60.272 47.619 0.00 0.00 42.39 3.24
1208 1259 2.039216 TCAACCGAACAAGCCCTTATGA 59.961 45.455 0.00 0.00 0.00 2.15
1214 1265 0.804989 CATCTCAACCGAACAAGCCC 59.195 55.000 0.00 0.00 0.00 5.19
1215 1266 0.804989 CCATCTCAACCGAACAAGCC 59.195 55.000 0.00 0.00 0.00 4.35
1216 1267 1.808411 TCCATCTCAACCGAACAAGC 58.192 50.000 0.00 0.00 0.00 4.01
1217 1268 4.455533 TCAAATCCATCTCAACCGAACAAG 59.544 41.667 0.00 0.00 0.00 3.16
1218 1269 4.393834 TCAAATCCATCTCAACCGAACAA 58.606 39.130 0.00 0.00 0.00 2.83
1219 1270 4.014569 TCAAATCCATCTCAACCGAACA 57.985 40.909 0.00 0.00 0.00 3.18
1220 1271 4.142600 CCTTCAAATCCATCTCAACCGAAC 60.143 45.833 0.00 0.00 0.00 3.95
1221 1272 4.009675 CCTTCAAATCCATCTCAACCGAA 58.990 43.478 0.00 0.00 0.00 4.30
1222 1273 3.609853 CCTTCAAATCCATCTCAACCGA 58.390 45.455 0.00 0.00 0.00 4.69
1223 1274 2.684881 CCCTTCAAATCCATCTCAACCG 59.315 50.000 0.00 0.00 0.00 4.44
1224 1275 3.026694 CCCCTTCAAATCCATCTCAACC 58.973 50.000 0.00 0.00 0.00 3.77
1225 1276 3.968265 TCCCCTTCAAATCCATCTCAAC 58.032 45.455 0.00 0.00 0.00 3.18
1226 1277 4.886755 ATCCCCTTCAAATCCATCTCAA 57.113 40.909 0.00 0.00 0.00 3.02
1227 1278 4.230272 TCAATCCCCTTCAAATCCATCTCA 59.770 41.667 0.00 0.00 0.00 3.27
1228 1279 4.796606 TCAATCCCCTTCAAATCCATCTC 58.203 43.478 0.00 0.00 0.00 2.75
1229 1280 4.387211 CCTCAATCCCCTTCAAATCCATCT 60.387 45.833 0.00 0.00 0.00 2.90
1230 1281 3.893813 CCTCAATCCCCTTCAAATCCATC 59.106 47.826 0.00 0.00 0.00 3.51
1231 1282 3.374540 CCCTCAATCCCCTTCAAATCCAT 60.375 47.826 0.00 0.00 0.00 3.41
1232 1283 2.024080 CCCTCAATCCCCTTCAAATCCA 60.024 50.000 0.00 0.00 0.00 3.41
1233 1284 2.670939 CCCTCAATCCCCTTCAAATCC 58.329 52.381 0.00 0.00 0.00 3.01
1234 1285 2.670939 CCCCTCAATCCCCTTCAAATC 58.329 52.381 0.00 0.00 0.00 2.17
1235 1286 1.291939 CCCCCTCAATCCCCTTCAAAT 59.708 52.381 0.00 0.00 0.00 2.32
1236 1287 0.709992 CCCCCTCAATCCCCTTCAAA 59.290 55.000 0.00 0.00 0.00 2.69
1237 1288 0.178816 TCCCCCTCAATCCCCTTCAA 60.179 55.000 0.00 0.00 0.00 2.69
1238 1289 0.178816 TTCCCCCTCAATCCCCTTCA 60.179 55.000 0.00 0.00 0.00 3.02
1239 1290 1.235756 ATTCCCCCTCAATCCCCTTC 58.764 55.000 0.00 0.00 0.00 3.46
1240 1291 1.711684 AATTCCCCCTCAATCCCCTT 58.288 50.000 0.00 0.00 0.00 3.95
1241 1292 2.624846 TAATTCCCCCTCAATCCCCT 57.375 50.000 0.00 0.00 0.00 4.79
1242 1293 3.502303 GGATTAATTCCCCCTCAATCCCC 60.502 52.174 3.43 0.00 39.05 4.81
1243 1294 3.779444 GGATTAATTCCCCCTCAATCCC 58.221 50.000 3.43 0.00 39.05 3.85
1254 1305 1.688735 GGCTTGCAGGGGATTAATTCC 59.311 52.381 3.88 3.88 44.62 3.01
1255 1306 2.387757 TGGCTTGCAGGGGATTAATTC 58.612 47.619 0.00 0.00 0.00 2.17
1256 1307 2.548464 TGGCTTGCAGGGGATTAATT 57.452 45.000 0.00 0.00 0.00 1.40
1257 1308 2.548464 TTGGCTTGCAGGGGATTAAT 57.452 45.000 0.00 0.00 0.00 1.40
1258 1309 2.317371 TTTGGCTTGCAGGGGATTAA 57.683 45.000 0.00 0.00 0.00 1.40
1259 1310 2.317371 TTTTGGCTTGCAGGGGATTA 57.683 45.000 0.00 0.00 0.00 1.75
1260 1311 1.556451 GATTTTGGCTTGCAGGGGATT 59.444 47.619 0.00 0.00 0.00 3.01
1261 1312 1.197812 GATTTTGGCTTGCAGGGGAT 58.802 50.000 0.00 0.00 0.00 3.85
1262 1313 0.904394 GGATTTTGGCTTGCAGGGGA 60.904 55.000 0.00 0.00 0.00 4.81
1263 1314 1.598517 GGATTTTGGCTTGCAGGGG 59.401 57.895 0.00 0.00 0.00 4.79
1264 1315 0.906282 AGGGATTTTGGCTTGCAGGG 60.906 55.000 0.00 0.00 0.00 4.45
1265 1316 0.248289 CAGGGATTTTGGCTTGCAGG 59.752 55.000 0.00 0.00 0.00 4.85
1266 1317 0.390735 GCAGGGATTTTGGCTTGCAG 60.391 55.000 0.00 0.00 0.00 4.41
1267 1318 1.120184 TGCAGGGATTTTGGCTTGCA 61.120 50.000 0.00 0.00 39.03 4.08
1268 1319 0.035176 TTGCAGGGATTTTGGCTTGC 59.965 50.000 0.00 0.00 0.00 4.01
1269 1320 2.547299 TTTGCAGGGATTTTGGCTTG 57.453 45.000 0.00 0.00 0.00 4.01
1270 1321 2.908351 AGATTTGCAGGGATTTTGGCTT 59.092 40.909 0.00 0.00 0.00 4.35
1271 1322 2.498885 GAGATTTGCAGGGATTTTGGCT 59.501 45.455 0.00 0.00 0.00 4.75
1272 1323 2.419159 GGAGATTTGCAGGGATTTTGGC 60.419 50.000 0.00 0.00 0.00 4.52
1273 1324 3.102204 AGGAGATTTGCAGGGATTTTGG 58.898 45.455 0.00 0.00 0.00 3.28
1274 1325 4.221262 TGAAGGAGATTTGCAGGGATTTTG 59.779 41.667 0.00 0.00 0.00 2.44
1275 1326 4.419282 TGAAGGAGATTTGCAGGGATTTT 58.581 39.130 0.00 0.00 0.00 1.82
1276 1327 4.051661 TGAAGGAGATTTGCAGGGATTT 57.948 40.909 0.00 0.00 0.00 2.17
1277 1328 3.744940 TGAAGGAGATTTGCAGGGATT 57.255 42.857 0.00 0.00 0.00 3.01
1278 1329 3.744940 TTGAAGGAGATTTGCAGGGAT 57.255 42.857 0.00 0.00 0.00 3.85
1279 1330 3.624777 GATTGAAGGAGATTTGCAGGGA 58.375 45.455 0.00 0.00 0.00 4.20
1280 1331 2.692041 GGATTGAAGGAGATTTGCAGGG 59.308 50.000 0.00 0.00 0.00 4.45
1281 1332 3.129988 GTGGATTGAAGGAGATTTGCAGG 59.870 47.826 0.00 0.00 0.00 4.85
1282 1333 3.129988 GGTGGATTGAAGGAGATTTGCAG 59.870 47.826 0.00 0.00 0.00 4.41
1283 1334 3.091545 GGTGGATTGAAGGAGATTTGCA 58.908 45.455 0.00 0.00 0.00 4.08
1284 1335 3.129988 CAGGTGGATTGAAGGAGATTTGC 59.870 47.826 0.00 0.00 0.00 3.68
1285 1336 3.698040 CCAGGTGGATTGAAGGAGATTTG 59.302 47.826 0.00 0.00 37.39 2.32
1286 1337 3.309410 CCCAGGTGGATTGAAGGAGATTT 60.309 47.826 0.00 0.00 37.39 2.17
1287 1338 2.243221 CCCAGGTGGATTGAAGGAGATT 59.757 50.000 0.00 0.00 37.39 2.40
1288 1339 1.849039 CCCAGGTGGATTGAAGGAGAT 59.151 52.381 0.00 0.00 37.39 2.75
1289 1340 1.289160 CCCAGGTGGATTGAAGGAGA 58.711 55.000 0.00 0.00 37.39 3.71
1290 1341 0.257039 CCCCAGGTGGATTGAAGGAG 59.743 60.000 0.00 0.00 37.39 3.69
1291 1342 0.477597 ACCCCAGGTGGATTGAAGGA 60.478 55.000 0.00 0.00 37.39 3.36
1292 1343 0.409484 AACCCCAGGTGGATTGAAGG 59.591 55.000 0.00 0.00 35.34 3.46
1293 1344 1.549203 CAACCCCAGGTGGATTGAAG 58.451 55.000 0.00 0.00 35.34 3.02
1294 1345 0.114168 CCAACCCCAGGTGGATTGAA 59.886 55.000 12.27 0.00 35.34 2.69
1295 1346 1.773635 CCAACCCCAGGTGGATTGA 59.226 57.895 12.27 0.00 35.34 2.57
1296 1347 1.305213 CCCAACCCCAGGTGGATTG 60.305 63.158 0.00 2.08 35.34 2.67
1297 1348 0.855400 ATCCCAACCCCAGGTGGATT 60.855 55.000 0.00 0.00 35.72 3.01
1298 1349 0.855400 AATCCCAACCCCAGGTGGAT 60.855 55.000 0.00 0.00 39.30 3.41
1299 1350 0.178828 TAATCCCAACCCCAGGTGGA 60.179 55.000 0.00 0.00 35.34 4.02
1300 1351 0.707616 TTAATCCCAACCCCAGGTGG 59.292 55.000 0.00 0.00 35.34 4.61
1301 1352 1.618616 GGTTAATCCCAACCCCAGGTG 60.619 57.143 0.00 0.00 41.89 4.00
1302 1353 0.708209 GGTTAATCCCAACCCCAGGT 59.292 55.000 0.00 0.00 41.89 4.00
1303 1354 0.395173 CGGTTAATCCCAACCCCAGG 60.395 60.000 0.00 0.00 44.37 4.45
1304 1355 0.621609 TCGGTTAATCCCAACCCCAG 59.378 55.000 0.00 0.00 44.37 4.45
1305 1356 1.073931 TTCGGTTAATCCCAACCCCA 58.926 50.000 0.00 0.00 44.37 4.96
1306 1357 1.272037 TGTTCGGTTAATCCCAACCCC 60.272 52.381 0.00 0.00 44.37 4.95
1307 1358 2.203470 TGTTCGGTTAATCCCAACCC 57.797 50.000 0.00 0.00 44.37 4.11
1308 1359 3.613193 GCTTTGTTCGGTTAATCCCAACC 60.613 47.826 0.00 0.00 43.88 3.77
1309 1360 3.571571 GCTTTGTTCGGTTAATCCCAAC 58.428 45.455 0.00 0.00 0.00 3.77
1310 1361 2.559231 GGCTTTGTTCGGTTAATCCCAA 59.441 45.455 0.00 0.00 0.00 4.12
1311 1362 2.164338 GGCTTTGTTCGGTTAATCCCA 58.836 47.619 0.00 0.00 0.00 4.37
1312 1363 2.443416 AGGCTTTGTTCGGTTAATCCC 58.557 47.619 0.00 0.00 0.00 3.85
1313 1364 4.095932 CCTTAGGCTTTGTTCGGTTAATCC 59.904 45.833 0.00 0.00 0.00 3.01
1314 1365 4.095932 CCCTTAGGCTTTGTTCGGTTAATC 59.904 45.833 0.00 0.00 0.00 1.75
1315 1366 4.014406 CCCTTAGGCTTTGTTCGGTTAAT 58.986 43.478 0.00 0.00 0.00 1.40
1316 1367 3.072768 TCCCTTAGGCTTTGTTCGGTTAA 59.927 43.478 0.00 0.00 0.00 2.01
1317 1368 2.638855 TCCCTTAGGCTTTGTTCGGTTA 59.361 45.455 0.00 0.00 0.00 2.85
1318 1369 1.422402 TCCCTTAGGCTTTGTTCGGTT 59.578 47.619 0.00 0.00 0.00 4.44
1319 1370 1.061546 TCCCTTAGGCTTTGTTCGGT 58.938 50.000 0.00 0.00 0.00 4.69
1320 1371 2.194201 TTCCCTTAGGCTTTGTTCGG 57.806 50.000 0.00 0.00 0.00 4.30
1321 1372 3.408634 TCTTTCCCTTAGGCTTTGTTCG 58.591 45.455 0.00 0.00 0.00 3.95
1322 1373 5.302059 AGTTTCTTTCCCTTAGGCTTTGTTC 59.698 40.000 0.00 0.00 0.00 3.18
1323 1374 5.208890 AGTTTCTTTCCCTTAGGCTTTGTT 58.791 37.500 0.00 0.00 0.00 2.83
1324 1375 4.804597 AGTTTCTTTCCCTTAGGCTTTGT 58.195 39.130 0.00 0.00 0.00 2.83
1325 1376 5.301805 TCAAGTTTCTTTCCCTTAGGCTTTG 59.698 40.000 0.00 0.00 0.00 2.77
1326 1377 5.454966 TCAAGTTTCTTTCCCTTAGGCTTT 58.545 37.500 0.00 0.00 0.00 3.51
1327 1378 5.061721 TCAAGTTTCTTTCCCTTAGGCTT 57.938 39.130 0.00 0.00 0.00 4.35
1328 1379 4.724279 TCAAGTTTCTTTCCCTTAGGCT 57.276 40.909 0.00 0.00 0.00 4.58
1329 1380 5.984695 AATCAAGTTTCTTTCCCTTAGGC 57.015 39.130 0.00 0.00 0.00 3.93
1330 1381 7.524717 TCAAATCAAGTTTCTTTCCCTTAGG 57.475 36.000 0.00 0.00 0.00 2.69
1331 1382 9.987272 AATTCAAATCAAGTTTCTTTCCCTTAG 57.013 29.630 0.00 0.00 0.00 2.18
1333 1384 9.112725 CAAATTCAAATCAAGTTTCTTTCCCTT 57.887 29.630 0.00 0.00 0.00 3.95
1334 1385 8.267183 ACAAATTCAAATCAAGTTTCTTTCCCT 58.733 29.630 0.00 0.00 0.00 4.20
1346 1397 4.152045 GCGGATTGCACAAATTCAAATCAA 59.848 37.500 0.00 0.00 45.45 2.57
1366 1417 6.730960 AATATATACGTGGTTAATTGGCGG 57.269 37.500 0.00 0.00 0.00 6.13
1376 1427 5.813672 ACGAGCACAAAAATATATACGTGGT 59.186 36.000 0.00 7.67 37.76 4.16
1377 1428 6.281848 ACGAGCACAAAAATATATACGTGG 57.718 37.500 0.00 0.00 0.00 4.94
1381 1432 7.225931 TCCAGGAACGAGCACAAAAATATATAC 59.774 37.037 0.00 0.00 0.00 1.47
1563 1930 2.359848 TGCGTACATAATAGTGACGGCT 59.640 45.455 0.00 0.00 34.19 5.52
1614 1981 3.539954 CGACGACTAAGTTTTAGTACGCC 59.460 47.826 14.65 7.96 0.00 5.68
1630 1997 1.121967 GACATTGACAACGACGACGAC 59.878 52.381 15.32 0.00 42.66 4.34
1631 1998 1.268640 TGACATTGACAACGACGACGA 60.269 47.619 15.32 0.00 42.66 4.20
1632 1999 1.125270 TGACATTGACAACGACGACG 58.875 50.000 5.58 5.58 45.75 5.12
1639 2006 3.435105 TGCCAACTTGACATTGACAAC 57.565 42.857 0.00 0.00 0.00 3.32
1694 2061 2.097304 TGCACGTACATCCATCAATTGC 59.903 45.455 0.00 0.00 0.00 3.56
1723 2090 5.017294 TGCAGACGTACATCCATCAATAA 57.983 39.130 0.00 0.00 0.00 1.40
1940 2309 0.614979 AGCTGGTCTTCTCGCCCTTA 60.615 55.000 0.00 0.00 0.00 2.69
2024 2393 8.329502 AGTTACTTGGCCTAATTAAGAGATGTT 58.670 33.333 3.32 0.00 0.00 2.71
2109 2482 6.515272 AGGAACATTTCACACAACCATATC 57.485 37.500 0.00 0.00 0.00 1.63
2214 2588 3.147595 TCCATCTCGGGGCTGTCG 61.148 66.667 0.00 0.00 34.36 4.35
2538 2912 4.084888 GCGTTCCCGAACAAGGCG 62.085 66.667 8.23 0.00 41.20 5.52
2633 3007 4.264253 TCAGGCGATGAACTGATGAATTT 58.736 39.130 0.00 0.00 38.71 1.82
2742 3116 1.959282 GATTCTGACCCATGGGATTGC 59.041 52.381 38.07 21.67 38.96 3.56
2812 3186 8.172352 ACATACAATGTTTGGTACAGCTTAAA 57.828 30.769 8.57 0.00 41.63 1.52
2894 3269 1.393539 CGCGGTCCTCATGTTAAAGTG 59.606 52.381 0.00 0.00 0.00 3.16
2909 3284 2.584143 GCCAACGTATAGCGCGGT 60.584 61.111 17.70 17.70 46.11 5.68
2912 3287 3.335534 CCGGCCAACGTATAGCGC 61.336 66.667 2.24 0.00 46.11 5.92
2918 3293 0.466543 AATATCAGCCGGCCAACGTA 59.533 50.000 26.15 9.97 42.24 3.57
2920 3295 0.738389 AAAATATCAGCCGGCCAACG 59.262 50.000 26.15 9.88 43.80 4.10
2957 3332 1.030457 ACGAGACCGAACAGTTGTCT 58.970 50.000 6.07 6.07 41.83 3.41
2964 3339 0.460722 TCCAAACACGAGACCGAACA 59.539 50.000 0.00 0.00 39.50 3.18
2970 3345 1.261619 CAGTTGCTCCAAACACGAGAC 59.738 52.381 0.00 0.00 32.21 3.36
2975 3350 2.229792 TGATCCAGTTGCTCCAAACAC 58.770 47.619 0.00 0.00 32.21 3.32
3001 3376 5.627780 CGTCCATGTTGCAATGATAATGATG 59.372 40.000 0.59 0.00 0.00 3.07
3008 3383 2.435422 TGTCGTCCATGTTGCAATGAT 58.565 42.857 0.59 0.00 0.00 2.45
3037 3412 1.153784 CATCCGTGTTGCAATGGCC 60.154 57.895 0.59 0.00 40.13 5.36
3049 3424 0.460284 GAGACCGCAACATCATCCGT 60.460 55.000 0.00 0.00 0.00 4.69
3051 3426 1.134699 TGAGAGACCGCAACATCATCC 60.135 52.381 0.00 0.00 0.00 3.51
3054 3429 1.469767 CGATGAGAGACCGCAACATCA 60.470 52.381 0.00 0.00 37.70 3.07
3080 3455 3.605946 GGGACCATAATGTTGCCCA 57.394 52.632 0.00 0.00 35.63 5.36
3109 3484 1.594194 GCAACCACAATGCCATCCGA 61.594 55.000 0.00 0.00 37.85 4.55
3116 3491 0.947180 CTGCAAGGCAACCACAATGC 60.947 55.000 0.00 0.00 38.41 3.56
3118 3493 1.368579 GCTGCAAGGCAACCACAAT 59.631 52.632 0.00 0.00 38.41 2.71
3141 3516 2.331098 CGCTTTTTCGTGCTGCCA 59.669 55.556 0.00 0.00 0.00 4.92
3143 3518 3.099574 GGCGCTTTTTCGTGCTGC 61.100 61.111 7.64 0.00 40.16 5.25
3145 3520 4.683334 GCGGCGCTTTTTCGTGCT 62.683 61.111 26.86 0.00 40.16 4.40
3219 4119 4.099266 GTGATAATGGCAATGGCAAAGGTA 59.901 41.667 14.81 4.58 42.43 3.08
3236 4136 0.616395 TGGAGGGCGACAGGTGATAA 60.616 55.000 0.00 0.00 0.00 1.75
3237 4137 1.001120 TGGAGGGCGACAGGTGATA 59.999 57.895 0.00 0.00 0.00 2.15
3238 4138 2.284625 TGGAGGGCGACAGGTGAT 60.285 61.111 0.00 0.00 0.00 3.06
3239 4139 2.997315 CTGGAGGGCGACAGGTGA 60.997 66.667 0.00 0.00 0.00 4.02
3243 4143 3.790437 ATGGCTGGAGGGCGACAG 61.790 66.667 0.00 0.00 44.11 3.51
3253 4153 2.990967 AACAACCGCCATGGCTGG 60.991 61.111 32.64 32.64 46.17 4.85
3282 4182 0.251386 TCTCTCTTCCCTCGTGCACT 60.251 55.000 16.19 0.00 0.00 4.40
3291 4191 2.509964 AGTCTCTCCTCTCTCTCTTCCC 59.490 54.545 0.00 0.00 0.00 3.97
3326 4226 2.933834 CCCCTTCCCCGGTGAGTT 60.934 66.667 0.00 0.00 0.00 3.01
3353 4253 5.628797 TCCCCTTTGCAATTCTTCTTTTT 57.371 34.783 0.00 0.00 0.00 1.94
3359 4259 4.020839 CAGTCAATCCCCTTTGCAATTCTT 60.021 41.667 0.00 0.00 0.00 2.52
3363 4263 2.181975 CCAGTCAATCCCCTTTGCAAT 58.818 47.619 0.00 0.00 0.00 3.56
3367 4267 1.355720 ACCTCCAGTCAATCCCCTTTG 59.644 52.381 0.00 0.00 0.00 2.77
3368 4268 1.760405 ACCTCCAGTCAATCCCCTTT 58.240 50.000 0.00 0.00 0.00 3.11
3369 4269 2.482494 CTACCTCCAGTCAATCCCCTT 58.518 52.381 0.00 0.00 0.00 3.95
3380 4280 1.202580 CGAATTCTGCCCTACCTCCAG 60.203 57.143 3.52 0.00 0.00 3.86
3391 4291 0.456221 TCTCCTCGACCGAATTCTGC 59.544 55.000 3.52 0.00 0.00 4.26
3392 4292 1.535015 GCTCTCCTCGACCGAATTCTG 60.535 57.143 3.52 0.00 0.00 3.02
3395 4295 1.950909 CTAGCTCTCCTCGACCGAATT 59.049 52.381 0.00 0.00 0.00 2.17
3398 4298 0.759959 ATCTAGCTCTCCTCGACCGA 59.240 55.000 0.00 0.00 0.00 4.69
3508 4408 9.233649 ACGTTATGGGTATCTTTTAAAATGTGA 57.766 29.630 0.09 0.00 0.00 3.58
3509 4409 9.284594 CACGTTATGGGTATCTTTTAAAATGTG 57.715 33.333 0.09 0.00 0.00 3.21
3510 4410 9.016438 ACACGTTATGGGTATCTTTTAAAATGT 57.984 29.630 0.09 0.00 0.00 2.71
3511 4411 9.498307 GACACGTTATGGGTATCTTTTAAAATG 57.502 33.333 0.09 0.00 0.00 2.32
3512 4412 9.457436 AGACACGTTATGGGTATCTTTTAAAAT 57.543 29.630 0.09 0.00 0.00 1.82
3513 4413 8.851541 AGACACGTTATGGGTATCTTTTAAAA 57.148 30.769 0.00 0.00 0.00 1.52
3514 4414 9.941325 TTAGACACGTTATGGGTATCTTTTAAA 57.059 29.630 0.00 0.00 0.00 1.52
3515 4415 9.941325 TTTAGACACGTTATGGGTATCTTTTAA 57.059 29.630 0.00 0.00 0.00 1.52
3516 4416 9.941325 TTTTAGACACGTTATGGGTATCTTTTA 57.059 29.630 0.00 0.00 0.00 1.52
3517 4417 8.851541 TTTTAGACACGTTATGGGTATCTTTT 57.148 30.769 0.00 0.00 0.00 2.27
3518 4418 8.851541 TTTTTAGACACGTTATGGGTATCTTT 57.148 30.769 0.00 0.00 0.00 2.52
3519 4419 8.098912 ACTTTTTAGACACGTTATGGGTATCTT 58.901 33.333 0.00 0.00 0.00 2.40
3520 4420 7.618137 ACTTTTTAGACACGTTATGGGTATCT 58.382 34.615 0.00 0.00 0.00 1.98
3521 4421 7.546667 TGACTTTTTAGACACGTTATGGGTATC 59.453 37.037 0.00 0.00 0.00 2.24
3522 4422 7.388437 TGACTTTTTAGACACGTTATGGGTAT 58.612 34.615 0.00 0.00 0.00 2.73
3523 4423 6.757237 TGACTTTTTAGACACGTTATGGGTA 58.243 36.000 0.00 0.00 0.00 3.69
3524 4424 5.613329 TGACTTTTTAGACACGTTATGGGT 58.387 37.500 0.00 0.00 0.00 4.51
3525 4425 6.370442 TGATGACTTTTTAGACACGTTATGGG 59.630 38.462 0.00 0.00 0.00 4.00
3526 4426 7.359262 TGATGACTTTTTAGACACGTTATGG 57.641 36.000 0.00 0.00 0.00 2.74
3527 4427 8.443160 ACATGATGACTTTTTAGACACGTTATG 58.557 33.333 0.00 0.00 0.00 1.90
3528 4428 8.443160 CACATGATGACTTTTTAGACACGTTAT 58.557 33.333 0.00 0.00 0.00 1.89
3529 4429 7.095397 CCACATGATGACTTTTTAGACACGTTA 60.095 37.037 0.00 0.00 0.00 3.18
3530 4430 6.293407 CCACATGATGACTTTTTAGACACGTT 60.293 38.462 0.00 0.00 0.00 3.99
3531 4431 5.179368 CCACATGATGACTTTTTAGACACGT 59.821 40.000 0.00 0.00 0.00 4.49
3532 4432 5.179368 ACCACATGATGACTTTTTAGACACG 59.821 40.000 0.00 0.00 0.00 4.49
3533 4433 6.017109 ACACCACATGATGACTTTTTAGACAC 60.017 38.462 0.00 0.00 0.00 3.67
3534 4434 6.061441 ACACCACATGATGACTTTTTAGACA 58.939 36.000 0.00 0.00 0.00 3.41
3535 4435 6.560253 ACACCACATGATGACTTTTTAGAC 57.440 37.500 0.00 0.00 0.00 2.59
3536 4436 8.684386 TTAACACCACATGATGACTTTTTAGA 57.316 30.769 0.00 0.00 0.00 2.10
3537 4437 9.743057 TTTTAACACCACATGATGACTTTTTAG 57.257 29.630 0.00 0.00 0.00 1.85
3542 4442 9.691362 GTTTATTTTAACACCACATGATGACTT 57.309 29.630 0.00 0.00 0.00 3.01
3543 4443 9.077885 AGTTTATTTTAACACCACATGATGACT 57.922 29.630 0.00 0.00 0.00 3.41
3549 4449 8.859156 GCACATAGTTTATTTTAACACCACATG 58.141 33.333 0.00 0.00 0.00 3.21
3550 4450 8.580720 TGCACATAGTTTATTTTAACACCACAT 58.419 29.630 0.00 0.00 0.00 3.21
3551 4451 7.941919 TGCACATAGTTTATTTTAACACCACA 58.058 30.769 0.00 0.00 0.00 4.17
3552 4452 8.804688 TTGCACATAGTTTATTTTAACACCAC 57.195 30.769 0.00 0.00 0.00 4.16
3553 4453 9.988815 AATTGCACATAGTTTATTTTAACACCA 57.011 25.926 0.00 0.00 0.00 4.17
3580 4480 9.995003 ATTGGCTACTATGAACATTTTGAAAAA 57.005 25.926 0.00 0.00 0.00 1.94
3590 4490 9.019656 ACAAACATTTATTGGCTACTATGAACA 57.980 29.630 0.00 0.00 32.02 3.18
3591 4491 9.503427 GACAAACATTTATTGGCTACTATGAAC 57.497 33.333 0.00 0.00 32.88 3.18
3592 4492 9.237187 TGACAAACATTTATTGGCTACTATGAA 57.763 29.630 0.00 0.00 36.72 2.57
3593 4493 8.673711 GTGACAAACATTTATTGGCTACTATGA 58.326 33.333 0.00 0.00 36.72 2.15
3594 4494 8.458052 TGTGACAAACATTTATTGGCTACTATG 58.542 33.333 0.00 0.00 36.72 2.23
3595 4495 8.574251 TGTGACAAACATTTATTGGCTACTAT 57.426 30.769 0.00 0.00 36.72 2.12
3596 4496 7.987750 TGTGACAAACATTTATTGGCTACTA 57.012 32.000 0.00 0.00 36.72 1.82
3597 4497 6.892658 TGTGACAAACATTTATTGGCTACT 57.107 33.333 0.00 0.00 36.72 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.