Multiple sequence alignment - TraesCS4A01G242500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G242500 chr4A 100.000 5965 0 0 1 5965 552414672 552408708 0.000000e+00 11016.0
1 TraesCS4A01G242500 chr4A 89.552 67 5 2 198 263 589618064 589618129 3.830000e-12 84.2
2 TraesCS4A01G242500 chr4A 95.000 40 2 0 4946 4985 201708401 201708362 4.990000e-06 63.9
3 TraesCS4A01G242500 chr4D 91.286 4074 238 53 926 4950 46592233 46596238 0.000000e+00 5448.0
4 TraesCS4A01G242500 chr4D 93.471 873 41 7 5109 5965 46596235 46597107 0.000000e+00 1282.0
5 TraesCS4A01G242500 chr4D 85.057 696 73 25 184 858 46591461 46592146 0.000000e+00 680.0
6 TraesCS4A01G242500 chr4D 91.071 56 2 3 874 927 46592136 46592190 8.290000e-09 73.1
7 TraesCS4A01G242500 chr4B 90.736 4048 252 54 926 4918 68090997 68094976 0.000000e+00 5284.0
8 TraesCS4A01G242500 chr4B 87.174 881 88 13 5109 5965 68095016 68095895 0.000000e+00 977.0
9 TraesCS4A01G242500 chr4B 81.982 888 91 45 12 858 67998595 67999454 0.000000e+00 689.0
10 TraesCS4A01G242500 chr4B 79.104 134 18 7 4943 5073 286072435 286072561 3.830000e-12 84.2
11 TraesCS4A01G242500 chr7D 74.882 637 108 34 245 844 89612248 89612869 5.970000e-60 243.0
12 TraesCS4A01G242500 chr7D 78.979 333 52 13 193 516 256821262 256821585 1.680000e-50 211.0
13 TraesCS4A01G242500 chr7D 78.155 206 28 12 629 829 102607070 102607263 1.360000e-21 115.0
14 TraesCS4A01G242500 chr7D 95.000 40 2 0 228 267 4697109 4697070 4.990000e-06 63.9
15 TraesCS4A01G242500 chr5D 78.261 322 36 18 339 647 397019642 397019942 6.140000e-40 176.0
16 TraesCS4A01G242500 chr5D 92.857 42 2 1 228 268 357431273 357431314 6.460000e-05 60.2
17 TraesCS4A01G242500 chr7A 76.536 358 47 28 324 677 222671382 222671706 1.720000e-35 161.0
18 TraesCS4A01G242500 chr7A 80.114 176 26 7 629 798 107402005 107402177 8.120000e-24 122.0
19 TraesCS4A01G242500 chr7A 97.297 37 1 0 4949 4985 32527941 32527977 4.990000e-06 63.9
20 TraesCS4A01G242500 chr5A 76.081 347 57 21 342 674 444064058 444063724 2.230000e-34 158.0
21 TraesCS4A01G242500 chr6B 90.826 109 7 2 5009 5114 712570265 712570157 6.230000e-30 143.0
22 TraesCS4A01G242500 chr6B 91.262 103 3 3 5010 5112 613115958 613115862 1.040000e-27 135.0
23 TraesCS4A01G242500 chr6B 81.752 137 18 4 529 663 704047632 704047763 2.270000e-19 108.0
24 TraesCS4A01G242500 chr7B 77.907 258 35 15 483 724 408114779 408114528 2.240000e-29 141.0
25 TraesCS4A01G242500 chr7B 78.713 202 32 10 529 724 407943790 407943594 2.260000e-24 124.0
26 TraesCS4A01G242500 chr7B 77.169 219 35 11 422 629 191686014 191686228 4.890000e-21 113.0
27 TraesCS4A01G242500 chr7B 91.304 46 4 0 4940 4985 746337281 746337326 4.990000e-06 63.9
28 TraesCS4A01G242500 chr2A 91.429 105 3 3 5009 5113 186403678 186403776 8.060000e-29 139.0
29 TraesCS4A01G242500 chr2A 91.358 81 5 2 524 604 527706970 527707048 6.320000e-20 110.0
30 TraesCS4A01G242500 chr2A 83.529 85 11 3 195 278 389632612 389632694 6.410000e-10 76.8
31 TraesCS4A01G242500 chr2A 85.455 55 6 1 209 263 273865 273917 8.350000e-04 56.5
32 TraesCS4A01G242500 chr1D 89.815 108 7 3 5010 5113 52665924 52665817 1.040000e-27 135.0
33 TraesCS4A01G242500 chr1D 89.720 107 7 3 5006 5112 302346149 302346047 3.750000e-27 134.0
34 TraesCS4A01G242500 chr1D 75.417 240 43 15 519 750 486903273 486903042 1.060000e-17 102.0
35 TraesCS4A01G242500 chr2D 89.815 108 5 3 5006 5113 532306002 532305901 3.750000e-27 134.0
36 TraesCS4A01G242500 chr6A 88.496 113 7 5 5001 5113 474880338 474880232 1.350000e-26 132.0
37 TraesCS4A01G242500 chr6A 75.593 295 35 24 231 516 11247422 11247156 1.760000e-20 111.0
38 TraesCS4A01G242500 chr6A 97.297 37 1 0 4945 4981 97593994 97593958 4.990000e-06 63.9
39 TraesCS4A01G242500 chr3A 88.496 113 7 5 5001 5113 511210510 511210404 1.350000e-26 132.0
40 TraesCS4A01G242500 chr3A 89.091 110 6 3 5003 5112 572598439 572598542 1.350000e-26 132.0
41 TraesCS4A01G242500 chr3A 95.000 40 2 0 4946 4985 652030436 652030475 4.990000e-06 63.9
42 TraesCS4A01G242500 chr1B 78.421 190 21 15 427 601 170013544 170013360 8.180000e-19 106.0
43 TraesCS4A01G242500 chr3B 93.750 48 2 1 4942 4988 189492760 189492713 2.980000e-08 71.3
44 TraesCS4A01G242500 chr1A 100.000 36 0 0 4946 4981 374579420 374579455 3.860000e-07 67.6
45 TraesCS4A01G242500 chr2B 97.297 37 1 0 4949 4985 690207313 690207349 4.990000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G242500 chr4A 552408708 552414672 5964 True 11016.000 11016 100.00000 1 5965 1 chr4A.!!$R2 5964
1 TraesCS4A01G242500 chr4D 46591461 46597107 5646 False 1870.775 5448 90.22125 184 5965 4 chr4D.!!$F1 5781
2 TraesCS4A01G242500 chr4B 68090997 68095895 4898 False 3130.500 5284 88.95500 926 5965 2 chr4B.!!$F3 5039
3 TraesCS4A01G242500 chr4B 67998595 67999454 859 False 689.000 689 81.98200 12 858 1 chr4B.!!$F1 846
4 TraesCS4A01G242500 chr7D 89612248 89612869 621 False 243.000 243 74.88200 245 844 1 chr7D.!!$F1 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 60 0.323725 ATCGCATTTCACTGGGGCTT 60.324 50.000 0.00 0.0 0.00 4.35 F
59 63 1.270252 CGCATTTCACTGGGGCTTTTT 60.270 47.619 0.00 0.0 0.00 1.94 F
1004 1187 1.719529 TTTCTAGTTCCCCACCACGA 58.280 50.000 0.00 0.0 0.00 4.35 F
2195 2401 0.031994 CTTTGGCGGGGTTGACTTTG 59.968 55.000 0.00 0.0 0.00 2.77 F
3493 3712 0.319813 GGTCCACTGTGCCAAAATGC 60.320 55.000 1.29 0.0 0.00 3.56 F
4672 4910 0.749818 TGGTTCTTGTTTGCGAGGCA 60.750 50.000 0.00 0.0 36.47 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1019 1202 0.033090 GGTTTCGTCGGAGAAGGTGT 59.967 55.000 0.00 0.00 39.69 4.16 R
1387 1570 0.601046 CTGACAAGTGCGGCAGAAGA 60.601 55.000 1.18 0.00 0.00 2.87 R
2278 2495 0.248458 GGGAACAAACAGCACACACG 60.248 55.000 0.00 0.00 0.00 4.49 R
3571 3790 1.473258 GGCCTGGTGCACATTCATAA 58.527 50.000 20.43 0.00 43.89 1.90 R
4723 4961 0.442310 GCAAATTCGCTGCGAGTGTA 59.558 50.000 24.61 10.83 37.14 2.90 R
5666 5924 1.059369 CTTTGTTCGGATCGCGCTG 59.941 57.895 5.56 0.00 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 5.692814 TCTTTCTTTCATCGCATTTCACTG 58.307 37.500 0.00 0.00 0.00 3.66
52 53 2.749076 TCTTTCATCGCATTTCACTGGG 59.251 45.455 0.00 0.00 0.00 4.45
53 54 1.462616 TTCATCGCATTTCACTGGGG 58.537 50.000 0.00 0.00 0.00 4.96
54 55 1.031571 TCATCGCATTTCACTGGGGC 61.032 55.000 0.00 0.00 0.00 5.80
56 60 0.323725 ATCGCATTTCACTGGGGCTT 60.324 50.000 0.00 0.00 0.00 4.35
59 63 1.270252 CGCATTTCACTGGGGCTTTTT 60.270 47.619 0.00 0.00 0.00 1.94
60 64 2.416747 GCATTTCACTGGGGCTTTTTC 58.583 47.619 0.00 0.00 0.00 2.29
63 67 4.262420 GCATTTCACTGGGGCTTTTTCTTA 60.262 41.667 0.00 0.00 0.00 2.10
67 71 5.467035 TCACTGGGGCTTTTTCTTATTTG 57.533 39.130 0.00 0.00 0.00 2.32
68 72 4.898861 TCACTGGGGCTTTTTCTTATTTGT 59.101 37.500 0.00 0.00 0.00 2.83
71 75 6.202762 CACTGGGGCTTTTTCTTATTTGTTTC 59.797 38.462 0.00 0.00 0.00 2.78
77 81 8.335356 GGGCTTTTTCTTATTTGTTTCTTTGTC 58.665 33.333 0.00 0.00 0.00 3.18
78 82 8.055986 GGCTTTTTCTTATTTGTTTCTTTGTCG 58.944 33.333 0.00 0.00 0.00 4.35
84 88 8.623310 TCTTATTTGTTTCTTTGTCGGTTTTC 57.377 30.769 0.00 0.00 0.00 2.29
85 89 8.244802 TCTTATTTGTTTCTTTGTCGGTTTTCA 58.755 29.630 0.00 0.00 0.00 2.69
89 93 5.715070 TGTTTCTTTGTCGGTTTTCATTGT 58.285 33.333 0.00 0.00 0.00 2.71
173 177 8.262715 TGGTTTCTTTTCTTTTGCTTTTTAGG 57.737 30.769 0.00 0.00 0.00 2.69
226 253 9.595823 TCTTAATTTTTCGTATAGGTCAGGAAG 57.404 33.333 0.00 0.00 0.00 3.46
234 261 6.270815 TCGTATAGGTCAGGAAGATTTTTCG 58.729 40.000 0.00 0.00 0.00 3.46
479 596 6.567050 ACATGATCACCATTTTTCTATGTGC 58.433 36.000 0.00 0.00 31.94 4.57
480 597 6.153170 ACATGATCACCATTTTTCTATGTGCA 59.847 34.615 0.00 0.00 31.94 4.57
481 598 6.778834 TGATCACCATTTTTCTATGTGCAT 57.221 33.333 0.00 0.00 0.00 3.96
482 599 7.878547 TGATCACCATTTTTCTATGTGCATA 57.121 32.000 0.00 0.00 0.00 3.14
484 601 8.190122 TGATCACCATTTTTCTATGTGCATAAC 58.810 33.333 0.00 0.00 0.00 1.89
590 717 8.984891 TTACCATTGTTCAAATGCTTGATTAG 57.015 30.769 0.00 0.00 41.22 1.73
1004 1187 1.719529 TTTCTAGTTCCCCACCACGA 58.280 50.000 0.00 0.00 0.00 4.35
1231 1414 2.989055 AAATGCCTCCCCGATACGCG 62.989 60.000 3.53 3.53 40.47 6.01
1515 1710 8.684386 ATTTTTGGGGAACGAAATAATGTTTT 57.316 26.923 0.00 0.00 37.88 2.43
1538 1733 2.785477 GCAATCATTACTTGCGTGATGC 59.215 45.455 0.00 0.00 46.70 3.91
1569 1767 1.678101 GTGCATTGGGAGGATTGCTAC 59.322 52.381 0.00 0.00 36.10 3.58
1593 1791 3.157087 TGGCTTGAAATTTCTCCTGGTC 58.843 45.455 18.64 6.85 0.00 4.02
1651 1849 1.671979 TGCTCTATCACTGCAATGGC 58.328 50.000 0.00 0.00 41.68 4.40
1797 1995 7.961351 TCAGTGTTGGAATTATTTGGAAATGT 58.039 30.769 0.00 0.00 0.00 2.71
1835 2033 5.596836 TCAAGGGGTTAAAATGCATGATC 57.403 39.130 0.00 0.00 0.00 2.92
1872 2070 9.321590 CATAATGTATGAATTGTATCTGTTGCG 57.678 33.333 0.00 0.00 38.45 4.85
1882 2080 2.490328 ATCTGTTGCGGTGTTGTTTG 57.510 45.000 0.00 0.00 0.00 2.93
1907 2112 6.606395 GGACACTCATTACTAACCTCTAGGAA 59.394 42.308 2.23 0.00 38.94 3.36
1933 2138 6.149640 CCATCTTGATCAGAAGCATATCCTTG 59.850 42.308 0.00 0.00 34.16 3.61
1945 2150 4.647853 AGCATATCCTTGCATGTGAAATGT 59.352 37.500 0.00 0.00 45.23 2.71
1947 2152 6.321945 AGCATATCCTTGCATGTGAAATGTTA 59.678 34.615 0.00 0.00 45.23 2.41
1961 2166 8.076910 TGTGAAATGTTATTTGGCTGGATTAT 57.923 30.769 0.00 0.00 0.00 1.28
1993 2198 5.988561 AGCTTATTGCACATTAGTCTAGCTC 59.011 40.000 0.00 0.00 45.94 4.09
2025 2231 1.025041 GGGCGATTAGAAGGCTTTGG 58.975 55.000 0.00 0.00 0.00 3.28
2130 2336 4.332819 GTCTGGATTATGTGCGTTAGCTTT 59.667 41.667 0.00 0.00 45.42 3.51
2134 2340 5.182190 TGGATTATGTGCGTTAGCTTTTTGA 59.818 36.000 0.00 0.00 45.42 2.69
2136 2342 2.376915 TGTGCGTTAGCTTTTTGACG 57.623 45.000 0.00 0.00 45.42 4.35
2159 2365 5.409826 CGATTAGGCTAGCTTAATCTTTGGG 59.590 44.000 36.64 25.39 40.56 4.12
2167 2373 3.053619 AGCTTAATCTTTGGGTAGGGTGG 60.054 47.826 0.00 0.00 0.00 4.61
2181 2387 3.790089 AGGGTGGTTAGAAGACTTTGG 57.210 47.619 0.00 0.00 0.00 3.28
2192 2398 1.228154 GACTTTGGCGGGGTTGACT 60.228 57.895 0.00 0.00 0.00 3.41
2194 2400 0.396556 ACTTTGGCGGGGTTGACTTT 60.397 50.000 0.00 0.00 0.00 2.66
2195 2401 0.031994 CTTTGGCGGGGTTGACTTTG 59.968 55.000 0.00 0.00 0.00 2.77
2198 2404 4.038080 GCGGGGTTGACTTTGGCG 62.038 66.667 0.00 0.00 0.00 5.69
2199 2405 3.361977 CGGGGTTGACTTTGGCGG 61.362 66.667 0.00 0.00 0.00 6.13
2209 2426 2.026729 TGACTTTGGCGGTCATAATCCA 60.027 45.455 4.15 0.00 38.57 3.41
2212 2429 3.381272 ACTTTGGCGGTCATAATCCATTG 59.619 43.478 0.00 0.00 0.00 2.82
2223 2440 7.500141 GGTCATAATCCATTGCAAACCTAAAT 58.500 34.615 1.71 0.00 0.00 1.40
2227 2444 9.260002 CATAATCCATTGCAAACCTAAATTACC 57.740 33.333 1.71 0.00 0.00 2.85
2248 2465 5.826643 ACCCTTAGATTTGTGCTTATCCAA 58.173 37.500 0.00 0.00 0.00 3.53
2258 2475 7.579589 TTTGTGCTTATCCAATTTTTCATCG 57.420 32.000 0.00 0.00 0.00 3.84
2278 2495 1.140816 GACAGACTTCAGTTGGTCGC 58.859 55.000 0.00 0.00 37.52 5.19
2359 2576 1.072219 GTTTGTGCGCAACGATGTTTG 60.072 47.619 14.00 0.00 33.82 2.93
2361 2578 0.590984 TGTGCGCAACGATGTTTGTG 60.591 50.000 14.00 0.00 39.54 3.33
2398 2615 2.420568 CGCCTAGCACCTAACCGGA 61.421 63.158 9.46 0.00 36.31 5.14
2424 2641 2.060980 CGGGTTCTCAGGCTAGGCT 61.061 63.158 14.10 14.10 0.00 4.58
2485 2702 9.905171 GCTTATAGGATGAAAAATGATTTCCTC 57.095 33.333 0.00 0.00 0.00 3.71
2488 2705 4.952335 AGGATGAAAAATGATTTCCTCGCT 59.048 37.500 0.00 0.00 0.00 4.93
2491 2708 6.914757 GGATGAAAAATGATTTCCTCGCTAAG 59.085 38.462 0.00 0.00 0.00 2.18
2524 2741 7.874940 TCATTAAGTGACATAATAGGCATTGC 58.125 34.615 0.00 0.00 0.00 3.56
2544 2761 2.223782 GCAGTGGAGAATTGTGTTTGCA 60.224 45.455 0.00 0.00 0.00 4.08
2624 2841 8.388103 GCAATACAACTAATATAAGGGCATACG 58.612 37.037 0.00 0.00 0.00 3.06
2653 2870 4.347876 GGGATTTGATAGGGAAAAATGGGG 59.652 45.833 0.00 0.00 0.00 4.96
2777 2994 6.759497 ATAAAGGAATTGTGTAGCAAGGAC 57.241 37.500 0.00 0.00 40.86 3.85
2817 3034 4.451096 TCGAAAACATCTGAGTTAGTTGCC 59.549 41.667 0.00 0.00 30.70 4.52
2820 3037 1.623811 ACATCTGAGTTAGTTGCCGGT 59.376 47.619 1.90 0.00 30.70 5.28
2851 3068 3.740832 TCATGAACTAGTTGCAACACGAG 59.259 43.478 30.11 23.80 0.00 4.18
2856 3073 4.317671 ACTAGTTGCAACACGAGTAGTT 57.682 40.909 30.11 9.68 43.69 2.24
2885 3102 6.916360 TTCAGTTGGAAGCCAAAATAAGAT 57.084 33.333 0.00 0.00 45.73 2.40
2913 3131 6.777213 AGACTAGTCTCGTGGTTAATCATT 57.223 37.500 20.00 0.00 34.17 2.57
2914 3132 7.876936 AGACTAGTCTCGTGGTTAATCATTA 57.123 36.000 20.00 0.00 34.17 1.90
3036 3254 4.751431 AGCACCAATGGCTTCTCC 57.249 55.556 0.00 0.00 38.81 3.71
3110 3328 1.064060 GGTAGGCGTCAATTGTGCATC 59.936 52.381 21.10 12.85 0.00 3.91
3125 3343 1.722636 GCATCTTGCCACTGCCTAGC 61.723 60.000 0.00 0.00 37.42 3.42
3291 3509 5.412594 CCTGGTATTAATGCGCATAGAACAT 59.587 40.000 25.61 9.48 0.00 2.71
3385 3604 3.561310 TCATGCGCTTGGTCTGATAAATC 59.439 43.478 21.59 0.00 0.00 2.17
3397 3616 6.765036 TGGTCTGATAAATCTCTGAAATCTGC 59.235 38.462 0.00 0.00 0.00 4.26
3493 3712 0.319813 GGTCCACTGTGCCAAAATGC 60.320 55.000 1.29 0.00 0.00 3.56
3517 3736 5.520376 AACCATTCTATTAGTGCATTGGC 57.480 39.130 0.00 0.00 41.68 4.52
3528 3747 3.276857 AGTGCATTGGCTCTCACATTAG 58.723 45.455 0.00 0.00 39.54 1.73
3571 3790 9.716531 CATATTGAACTATGTCCTCATGTACAT 57.283 33.333 1.41 1.41 39.56 2.29
3589 3808 3.088194 CATTATGAATGTGCACCAGGC 57.912 47.619 15.69 1.65 45.13 4.85
3613 3832 2.191128 ATTCTTCCGCACTGCTCTTT 57.809 45.000 0.00 0.00 0.00 2.52
3737 3958 1.429930 TCTGTGGTTGGGCTGTTAGA 58.570 50.000 0.00 0.00 0.00 2.10
3758 3979 8.896744 GTTAGAAAATGGAGATGATGAATGACA 58.103 33.333 0.00 0.00 0.00 3.58
3759 3980 7.330900 AGAAAATGGAGATGATGAATGACAC 57.669 36.000 0.00 0.00 0.00 3.67
3760 3981 5.746307 AAATGGAGATGATGAATGACACG 57.254 39.130 0.00 0.00 0.00 4.49
3783 4004 3.505680 TGAGCGACCAATTTAAAGCATGT 59.494 39.130 0.00 0.00 0.00 3.21
3792 4013 5.409214 CCAATTTAAAGCATGTTGAAGGTGG 59.591 40.000 0.00 0.00 0.00 4.61
3870 4091 7.658525 ATGGTTAATGTGAATTGAATAGCCA 57.341 32.000 0.00 0.00 0.00 4.75
3874 4095 4.882671 ATGTGAATTGAATAGCCACGAC 57.117 40.909 0.00 0.00 0.00 4.34
3883 4104 5.712217 TGAATAGCCACGACGAAATAAAG 57.288 39.130 0.00 0.00 0.00 1.85
3884 4105 5.412640 TGAATAGCCACGACGAAATAAAGA 58.587 37.500 0.00 0.00 0.00 2.52
3905 4127 4.948621 AGAGCTGTATAACTAGACGTGGTT 59.051 41.667 0.00 0.00 0.00 3.67
3953 4175 2.645838 ACTGCCTCATGTTCTGTGTT 57.354 45.000 0.00 0.00 0.00 3.32
3955 4177 2.620115 ACTGCCTCATGTTCTGTGTTTG 59.380 45.455 0.00 0.00 0.00 2.93
4039 4261 8.634335 TCTGAGTTTTCACATATTCATTTCCA 57.366 30.769 0.00 0.00 0.00 3.53
4090 4312 6.911250 TCCGGCTTGAAATAGTCAGATATA 57.089 37.500 0.00 0.00 37.61 0.86
4091 4313 6.925211 TCCGGCTTGAAATAGTCAGATATAG 58.075 40.000 0.00 0.00 37.61 1.31
4104 4326 6.442952 AGTCAGATATAGTAGAAAAGCTGCG 58.557 40.000 0.00 0.00 34.03 5.18
4119 4341 2.679837 AGCTGCGTCATAACTTTCATGG 59.320 45.455 0.00 0.00 0.00 3.66
4217 4440 6.716628 AGTTCTGTTTATTCCAAGAATGCAGA 59.283 34.615 12.64 12.64 0.00 4.26
4219 4442 8.677300 GTTCTGTTTATTCCAAGAATGCAGATA 58.323 33.333 15.23 8.67 31.73 1.98
4221 4444 9.241919 TCTGTTTATTCCAAGAATGCAGATAAA 57.758 29.630 12.64 0.00 0.00 1.40
4222 4445 9.294030 CTGTTTATTCCAAGAATGCAGATAAAC 57.706 33.333 0.00 0.00 36.24 2.01
4228 4451 8.668510 TTCCAAGAATGCAGATAAACTAGATC 57.331 34.615 0.00 0.00 0.00 2.75
4229 4452 8.027524 TCCAAGAATGCAGATAAACTAGATCT 57.972 34.615 0.00 0.00 33.82 2.75
4230 4453 8.489489 TCCAAGAATGCAGATAAACTAGATCTT 58.511 33.333 0.00 0.00 31.05 2.40
4231 4454 9.770097 CCAAGAATGCAGATAAACTAGATCTTA 57.230 33.333 0.00 0.00 31.05 2.10
4294 4525 7.095313 CCTGCTAGTATGTGCTATGATTTTGAG 60.095 40.741 0.00 0.00 0.00 3.02
4308 4539 4.943705 TGATTTTGAGTCCCTAGCATGTTC 59.056 41.667 0.00 0.00 0.00 3.18
4312 4543 4.737855 TGAGTCCCTAGCATGTTCTAAC 57.262 45.455 0.00 0.00 0.00 2.34
4314 4545 3.707102 GAGTCCCTAGCATGTTCTAACCT 59.293 47.826 0.00 0.00 0.00 3.50
4315 4546 3.707102 AGTCCCTAGCATGTTCTAACCTC 59.293 47.826 0.00 0.00 0.00 3.85
4317 4548 3.041946 CCCTAGCATGTTCTAACCTCCT 58.958 50.000 0.00 0.00 0.00 3.69
4319 4550 4.080299 CCCTAGCATGTTCTAACCTCCTTT 60.080 45.833 0.00 0.00 0.00 3.11
4320 4551 4.878397 CCTAGCATGTTCTAACCTCCTTTG 59.122 45.833 0.00 0.00 0.00 2.77
4321 4552 4.640771 AGCATGTTCTAACCTCCTTTGA 57.359 40.909 0.00 0.00 0.00 2.69
4322 4553 5.184892 AGCATGTTCTAACCTCCTTTGAT 57.815 39.130 0.00 0.00 0.00 2.57
4323 4554 5.574188 AGCATGTTCTAACCTCCTTTGATT 58.426 37.500 0.00 0.00 0.00 2.57
4324 4555 6.012745 AGCATGTTCTAACCTCCTTTGATTT 58.987 36.000 0.00 0.00 0.00 2.17
4336 4567 6.813152 ACCTCCTTTGATTTGAATAAAATGCG 59.187 34.615 0.00 0.00 38.64 4.73
4348 4579 2.902705 AAAATGCGCCGACCTATCTA 57.097 45.000 4.18 0.00 0.00 1.98
4351 4582 2.902705 ATGCGCCGACCTATCTAAAA 57.097 45.000 4.18 0.00 0.00 1.52
4363 4594 9.617523 CCGACCTATCTAAAAATTACCCTTTTA 57.382 33.333 0.00 0.00 0.00 1.52
4376 4608 4.929146 ACCCTTTTATCTTGTACTGCCT 57.071 40.909 0.00 0.00 0.00 4.75
4379 4611 7.685849 ACCCTTTTATCTTGTACTGCCTATA 57.314 36.000 0.00 0.00 0.00 1.31
4423 4658 0.813184 CTACCTGGCATGCAACCTTG 59.187 55.000 21.36 3.74 0.00 3.61
4493 4728 2.229784 CAGTTCTTTTGGGTGCATCTCC 59.770 50.000 0.00 0.00 0.00 3.71
4543 4778 6.239289 CCTTTTCCTGGATTCTGCAAAGTTAA 60.239 38.462 12.75 0.00 0.00 2.01
4568 4805 3.706373 CCCACTGCCGGTGCTAGT 61.706 66.667 1.90 0.00 44.08 2.57
4608 4845 9.010029 ACAAACGGACATTCTACTTGATATTTT 57.990 29.630 0.00 0.00 0.00 1.82
4644 4882 3.425359 CGTCCTTTTGATCAGCACATGTC 60.425 47.826 0.00 0.00 0.00 3.06
4669 4907 1.879380 TGGATGGTTCTTGTTTGCGAG 59.121 47.619 0.00 0.00 0.00 5.03
4672 4910 0.749818 TGGTTCTTGTTTGCGAGGCA 60.750 50.000 0.00 0.00 36.47 4.75
4691 4929 6.195244 CGAGGCATGTTGAAATCTTTAATTCG 59.805 38.462 0.00 0.00 0.00 3.34
4715 4953 4.679373 ATCGGTATCATGCTGTTTCTCT 57.321 40.909 0.00 0.00 0.00 3.10
4723 4961 5.929058 TCATGCTGTTTCTCTATGAGTCT 57.071 39.130 0.00 0.00 0.00 3.24
4742 4980 0.442310 TACACTCGCAGCGAATTTGC 59.558 50.000 20.04 9.87 34.74 3.68
4745 4983 0.110056 ACTCGCAGCGAATTTGCAAG 60.110 50.000 20.04 12.34 41.59 4.01
4759 4997 0.179020 TGCAAGTGGGAGTTCAGTGG 60.179 55.000 0.00 0.00 0.00 4.00
4771 5009 5.048434 GGGAGTTCAGTGGAATCAAAGAAAG 60.048 44.000 0.55 0.00 35.05 2.62
4784 5022 3.896888 TCAAAGAAAGCCCACATGTGATT 59.103 39.130 27.46 15.07 0.00 2.57
4785 5023 3.947910 AAGAAAGCCCACATGTGATTG 57.052 42.857 27.46 15.30 0.00 2.67
4786 5024 2.880443 AGAAAGCCCACATGTGATTGT 58.120 42.857 27.46 11.53 0.00 2.71
4787 5025 2.821969 AGAAAGCCCACATGTGATTGTC 59.178 45.455 27.46 15.10 0.00 3.18
4790 5028 1.065199 AGCCCACATGTGATTGTCGAT 60.065 47.619 27.46 2.97 0.00 3.59
4791 5029 2.170397 AGCCCACATGTGATTGTCGATA 59.830 45.455 27.46 0.00 0.00 2.92
4823 5061 7.985184 TCGTTATTGATAGCCAAACTGTAGATT 59.015 33.333 0.00 0.00 38.43 2.40
4832 5070 4.202010 GCCAAACTGTAGATTGTGTTGTGT 60.202 41.667 1.99 0.00 0.00 3.72
4953 5206 6.309389 TCCTTTTCCCTTATCAAGTACTCC 57.691 41.667 0.00 0.00 0.00 3.85
4954 5207 5.191124 TCCTTTTCCCTTATCAAGTACTCCC 59.809 44.000 0.00 0.00 0.00 4.30
4955 5208 5.191921 CCTTTTCCCTTATCAAGTACTCCCT 59.808 44.000 0.00 0.00 0.00 4.20
4956 5209 5.952347 TTTCCCTTATCAAGTACTCCCTC 57.048 43.478 0.00 0.00 0.00 4.30
4957 5210 3.924922 TCCCTTATCAAGTACTCCCTCC 58.075 50.000 0.00 0.00 0.00 4.30
4958 5211 3.273886 TCCCTTATCAAGTACTCCCTCCA 59.726 47.826 0.00 0.00 0.00 3.86
4959 5212 4.077982 TCCCTTATCAAGTACTCCCTCCAT 60.078 45.833 0.00 0.00 0.00 3.41
4960 5213 4.660771 CCCTTATCAAGTACTCCCTCCATT 59.339 45.833 0.00 0.00 0.00 3.16
4961 5214 5.132816 CCCTTATCAAGTACTCCCTCCATTT 59.867 44.000 0.00 0.00 0.00 2.32
4962 5215 6.292150 CCTTATCAAGTACTCCCTCCATTTC 58.708 44.000 0.00 0.00 0.00 2.17
4963 5216 6.126768 CCTTATCAAGTACTCCCTCCATTTCA 60.127 42.308 0.00 0.00 0.00 2.69
4964 5217 5.779241 ATCAAGTACTCCCTCCATTTCAA 57.221 39.130 0.00 0.00 0.00 2.69
4965 5218 5.576563 TCAAGTACTCCCTCCATTTCAAA 57.423 39.130 0.00 0.00 0.00 2.69
4966 5219 5.947663 TCAAGTACTCCCTCCATTTCAAAA 58.052 37.500 0.00 0.00 0.00 2.44
4967 5220 6.552008 TCAAGTACTCCCTCCATTTCAAAAT 58.448 36.000 0.00 0.00 0.00 1.82
4968 5221 7.695055 TCAAGTACTCCCTCCATTTCAAAATA 58.305 34.615 0.00 0.00 0.00 1.40
4969 5222 7.829211 TCAAGTACTCCCTCCATTTCAAAATAG 59.171 37.037 0.00 0.00 0.00 1.73
4970 5223 7.510675 AGTACTCCCTCCATTTCAAAATAGA 57.489 36.000 0.00 0.00 0.00 1.98
4971 5224 8.107196 AGTACTCCCTCCATTTCAAAATAGAT 57.893 34.615 0.00 0.00 0.00 1.98
4972 5225 7.995488 AGTACTCCCTCCATTTCAAAATAGATG 59.005 37.037 0.00 0.00 0.00 2.90
4973 5226 6.973642 ACTCCCTCCATTTCAAAATAGATGA 58.026 36.000 0.00 0.00 0.00 2.92
4974 5227 6.830838 ACTCCCTCCATTTCAAAATAGATGAC 59.169 38.462 0.00 0.00 0.00 3.06
4975 5228 6.973642 TCCCTCCATTTCAAAATAGATGACT 58.026 36.000 0.00 0.00 0.00 3.41
4976 5229 7.056635 TCCCTCCATTTCAAAATAGATGACTC 58.943 38.462 0.00 0.00 0.00 3.36
4977 5230 6.830324 CCCTCCATTTCAAAATAGATGACTCA 59.170 38.462 0.00 0.00 0.00 3.41
4978 5231 7.340232 CCCTCCATTTCAAAATAGATGACTCAA 59.660 37.037 0.00 0.00 0.00 3.02
4979 5232 8.186821 CCTCCATTTCAAAATAGATGACTCAAC 58.813 37.037 0.00 0.00 0.00 3.18
4980 5233 8.868522 TCCATTTCAAAATAGATGACTCAACT 57.131 30.769 0.00 0.00 0.00 3.16
4981 5234 9.958180 TCCATTTCAAAATAGATGACTCAACTA 57.042 29.630 0.00 0.00 0.00 2.24
4993 5246 7.740805 AGATGACTCAACTATATCCTTTTCCC 58.259 38.462 0.00 0.00 0.00 3.97
4994 5247 7.570607 AGATGACTCAACTATATCCTTTTCCCT 59.429 37.037 0.00 0.00 0.00 4.20
4995 5248 7.510675 TGACTCAACTATATCCTTTTCCCTT 57.489 36.000 0.00 0.00 0.00 3.95
4996 5249 7.928873 TGACTCAACTATATCCTTTTCCCTTT 58.071 34.615 0.00 0.00 0.00 3.11
4997 5250 8.390921 TGACTCAACTATATCCTTTTCCCTTTT 58.609 33.333 0.00 0.00 0.00 2.27
4998 5251 8.809468 ACTCAACTATATCCTTTTCCCTTTTC 57.191 34.615 0.00 0.00 0.00 2.29
4999 5252 7.834681 ACTCAACTATATCCTTTTCCCTTTTCC 59.165 37.037 0.00 0.00 0.00 3.13
5000 5253 7.123383 TCAACTATATCCTTTTCCCTTTTCCC 58.877 38.462 0.00 0.00 0.00 3.97
5001 5254 6.927691 ACTATATCCTTTTCCCTTTTCCCT 57.072 37.500 0.00 0.00 0.00 4.20
5002 5255 7.298678 ACTATATCCTTTTCCCTTTTCCCTT 57.701 36.000 0.00 0.00 0.00 3.95
5003 5256 8.415392 ACTATATCCTTTTCCCTTTTCCCTTA 57.585 34.615 0.00 0.00 0.00 2.69
5004 5257 9.026170 ACTATATCCTTTTCCCTTTTCCCTTAT 57.974 33.333 0.00 0.00 0.00 1.73
5005 5258 9.521841 CTATATCCTTTTCCCTTTTCCCTTATC 57.478 37.037 0.00 0.00 0.00 1.75
5006 5259 5.608798 TCCTTTTCCCTTTTCCCTTATCA 57.391 39.130 0.00 0.00 0.00 2.15
5007 5260 5.971493 TCCTTTTCCCTTTTCCCTTATCAA 58.029 37.500 0.00 0.00 0.00 2.57
5008 5261 6.016555 TCCTTTTCCCTTTTCCCTTATCAAG 58.983 40.000 0.00 0.00 0.00 3.02
5009 5262 5.780282 CCTTTTCCCTTTTCCCTTATCAAGT 59.220 40.000 0.00 0.00 0.00 3.16
5010 5263 6.951778 CCTTTTCCCTTTTCCCTTATCAAGTA 59.048 38.462 0.00 0.00 0.00 2.24
5011 5264 7.093902 CCTTTTCCCTTTTCCCTTATCAAGTAC 60.094 40.741 0.00 0.00 0.00 2.73
5012 5265 6.713731 TTCCCTTTTCCCTTATCAAGTACT 57.286 37.500 0.00 0.00 0.00 2.73
5013 5266 6.309389 TCCCTTTTCCCTTATCAAGTACTC 57.691 41.667 0.00 0.00 0.00 2.59
5014 5267 5.191124 TCCCTTTTCCCTTATCAAGTACTCC 59.809 44.000 0.00 0.00 0.00 3.85
5015 5268 5.437946 CCTTTTCCCTTATCAAGTACTCCC 58.562 45.833 0.00 0.00 0.00 4.30
5016 5269 5.191921 CCTTTTCCCTTATCAAGTACTCCCT 59.808 44.000 0.00 0.00 0.00 4.20
5017 5270 5.952347 TTTCCCTTATCAAGTACTCCCTC 57.048 43.478 0.00 0.00 0.00 4.30
5018 5271 3.924922 TCCCTTATCAAGTACTCCCTCC 58.075 50.000 0.00 0.00 0.00 4.30
5019 5272 2.628657 CCCTTATCAAGTACTCCCTCCG 59.371 54.545 0.00 0.00 0.00 4.63
5020 5273 3.297736 CCTTATCAAGTACTCCCTCCGT 58.702 50.000 0.00 0.00 0.00 4.69
5021 5274 3.705072 CCTTATCAAGTACTCCCTCCGTT 59.295 47.826 0.00 0.00 0.00 4.44
5022 5275 4.202131 CCTTATCAAGTACTCCCTCCGTTC 60.202 50.000 0.00 0.00 0.00 3.95
5023 5276 1.553706 TCAAGTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 0.00 3.62
5024 5277 1.203087 TCAAGTACTCCCTCCGTTCCA 60.203 52.381 0.00 0.00 0.00 3.53
5025 5278 1.621814 CAAGTACTCCCTCCGTTCCAA 59.378 52.381 0.00 0.00 0.00 3.53
5026 5279 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
5027 5280 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
5028 5281 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
5029 5282 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
5030 5283 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5031 5284 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5032 5285 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5033 5286 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5034 5287 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5035 5288 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5036 5289 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
5037 5290 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
5038 5291 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
5039 5292 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
5040 5293 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
5041 5294 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
5042 5295 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
5043 5296 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
5044 5297 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
5045 5298 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
5046 5299 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
5047 5300 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
5048 5301 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
5058 5311 9.656040 TGACTCAACTTTGTACTAACTTTAACA 57.344 29.630 0.00 0.00 0.00 2.41
5059 5312 9.911980 GACTCAACTTTGTACTAACTTTAACAC 57.088 33.333 0.00 0.00 0.00 3.32
5060 5313 9.439500 ACTCAACTTTGTACTAACTTTAACACA 57.561 29.630 0.00 0.00 0.00 3.72
5067 5320 9.843334 TTTGTACTAACTTTAACACAAAGTTGG 57.157 29.630 20.03 19.28 46.41 3.77
5068 5321 8.789825 TGTACTAACTTTAACACAAAGTTGGA 57.210 30.769 23.92 10.82 45.59 3.53
5069 5322 9.398538 TGTACTAACTTTAACACAAAGTTGGAT 57.601 29.630 23.92 14.55 45.59 3.41
5070 5323 9.874215 GTACTAACTTTAACACAAAGTTGGATC 57.126 33.333 23.92 15.34 45.59 3.36
5071 5324 8.514330 ACTAACTTTAACACAAAGTTGGATCA 57.486 30.769 23.92 7.19 45.59 2.92
5072 5325 9.131791 ACTAACTTTAACACAAAGTTGGATCAT 57.868 29.630 23.92 6.88 45.59 2.45
5073 5326 9.965824 CTAACTTTAACACAAAGTTGGATCATT 57.034 29.630 20.03 0.32 45.59 2.57
5076 5329 9.744468 ACTTTAACACAAAGTTGGATCATTTAC 57.256 29.630 0.00 0.00 41.50 2.01
5077 5330 9.743057 CTTTAACACAAAGTTGGATCATTTACA 57.257 29.630 0.00 0.00 41.50 2.41
5080 5333 8.647143 AACACAAAGTTGGATCATTTACAAAG 57.353 30.769 0.00 0.00 39.49 2.77
5081 5334 7.781056 ACACAAAGTTGGATCATTTACAAAGT 58.219 30.769 0.00 0.00 0.00 2.66
5082 5335 8.257306 ACACAAAGTTGGATCATTTACAAAGTT 58.743 29.630 0.00 0.00 0.00 2.66
5083 5336 8.542132 CACAAAGTTGGATCATTTACAAAGTTG 58.458 33.333 0.00 0.60 0.00 3.16
5084 5337 7.710475 ACAAAGTTGGATCATTTACAAAGTTGG 59.290 33.333 0.00 0.00 30.51 3.77
5085 5338 7.595819 AAGTTGGATCATTTACAAAGTTGGA 57.404 32.000 0.00 0.00 0.00 3.53
5086 5339 7.781324 AGTTGGATCATTTACAAAGTTGGAT 57.219 32.000 0.00 0.00 0.00 3.41
5087 5340 7.830739 AGTTGGATCATTTACAAAGTTGGATC 58.169 34.615 0.00 0.00 0.00 3.36
5088 5341 7.451255 AGTTGGATCATTTACAAAGTTGGATCA 59.549 33.333 0.00 0.00 33.20 2.92
5089 5342 7.959658 TGGATCATTTACAAAGTTGGATCAT 57.040 32.000 0.00 0.00 33.20 2.45
5090 5343 7.999679 TGGATCATTTACAAAGTTGGATCATC 58.000 34.615 0.00 0.00 33.20 2.92
5091 5344 7.835682 TGGATCATTTACAAAGTTGGATCATCT 59.164 33.333 0.00 0.00 33.20 2.90
5092 5345 9.342308 GGATCATTTACAAAGTTGGATCATCTA 57.658 33.333 0.00 0.00 33.20 1.98
5101 5354 9.696917 ACAAAGTTGGATCATCTATTTTGAAAC 57.303 29.630 12.56 0.00 0.00 2.78
5102 5355 8.853345 CAAAGTTGGATCATCTATTTTGAAACG 58.147 33.333 0.00 0.00 0.00 3.60
5103 5356 7.088589 AGTTGGATCATCTATTTTGAAACGG 57.911 36.000 0.00 0.00 0.00 4.44
5104 5357 6.884295 AGTTGGATCATCTATTTTGAAACGGA 59.116 34.615 0.00 0.00 0.00 4.69
5105 5358 6.925610 TGGATCATCTATTTTGAAACGGAG 57.074 37.500 0.00 0.00 0.00 4.63
5106 5359 5.822519 TGGATCATCTATTTTGAAACGGAGG 59.177 40.000 0.00 0.00 0.00 4.30
5107 5360 5.239525 GGATCATCTATTTTGAAACGGAGGG 59.760 44.000 0.00 0.00 0.00 4.30
5108 5361 5.429681 TCATCTATTTTGAAACGGAGGGA 57.570 39.130 0.00 0.00 0.00 4.20
5109 5362 5.428253 TCATCTATTTTGAAACGGAGGGAG 58.572 41.667 0.00 0.00 0.00 4.30
5110 5363 4.903045 TCTATTTTGAAACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
5111 5364 6.155565 TCATCTATTTTGAAACGGAGGGAGTA 59.844 38.462 0.00 0.00 0.00 2.59
5141 5394 3.758554 CTCATGTTTCCACAGTTAAGGGG 59.241 47.826 0.00 0.00 35.94 4.79
5187 5445 2.884639 GGTTAACAGCAAGCTTCTTCCA 59.115 45.455 8.10 0.00 0.00 3.53
5196 5454 0.964358 AGCTTCTTCCATGCACCTGC 60.964 55.000 0.00 0.00 42.50 4.85
5283 5541 3.255149 CGGTTACTGGGATAAGCTCGTAT 59.745 47.826 0.00 0.00 31.68 3.06
5319 5577 3.769739 TTATTCCAGTGACACAGCTGT 57.230 42.857 15.25 15.25 0.00 4.40
5328 5586 5.473931 CAGTGACACAGCTGTAAGTTCTAT 58.526 41.667 21.20 4.26 35.30 1.98
5610 5868 2.562298 AGAATGATCTCTCTGCCGATCC 59.438 50.000 0.00 0.00 36.15 3.36
5666 5924 1.503542 CTGCGGATGGAAGCAACAC 59.496 57.895 0.00 0.00 43.31 3.32
5695 5953 2.747446 TCCGAACAAAGCTTAGCATTCC 59.253 45.455 7.07 0.00 0.00 3.01
5708 5981 0.373716 GCATTCCGCTCTTAACACCG 59.626 55.000 0.00 0.00 37.77 4.94
5709 5982 0.373716 CATTCCGCTCTTAACACCGC 59.626 55.000 0.00 0.00 0.00 5.68
5936 6214 2.446435 GGCCCATTCTTGCAGAAGTAA 58.554 47.619 0.00 0.00 37.69 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.855388 CCAGTGAAATGCGATGAAAGAAAG 59.145 41.667 0.00 0.00 0.00 2.62
35 36 1.031571 GCCCCAGTGAAATGCGATGA 61.032 55.000 0.00 0.00 0.00 2.92
50 51 7.282224 ACAAAGAAACAAATAAGAAAAAGCCCC 59.718 33.333 0.00 0.00 0.00 5.80
52 53 8.055986 CGACAAAGAAACAAATAAGAAAAAGCC 58.944 33.333 0.00 0.00 0.00 4.35
53 54 8.055986 CCGACAAAGAAACAAATAAGAAAAAGC 58.944 33.333 0.00 0.00 0.00 3.51
54 55 9.083080 ACCGACAAAGAAACAAATAAGAAAAAG 57.917 29.630 0.00 0.00 0.00 2.27
56 60 8.989653 AACCGACAAAGAAACAAATAAGAAAA 57.010 26.923 0.00 0.00 0.00 2.29
59 63 8.244802 TGAAAACCGACAAAGAAACAAATAAGA 58.755 29.630 0.00 0.00 0.00 2.10
60 64 8.401046 TGAAAACCGACAAAGAAACAAATAAG 57.599 30.769 0.00 0.00 0.00 1.73
63 67 7.333174 ACAATGAAAACCGACAAAGAAACAAAT 59.667 29.630 0.00 0.00 0.00 2.32
67 71 6.641176 AACAATGAAAACCGACAAAGAAAC 57.359 33.333 0.00 0.00 0.00 2.78
68 72 7.659652 AAAACAATGAAAACCGACAAAGAAA 57.340 28.000 0.00 0.00 0.00 2.52
141 145 6.939730 AGCAAAAGAAAAGAAACCAAAGGAAA 59.060 30.769 0.00 0.00 0.00 3.13
171 175 8.458573 AAAACCAAAAGAAACAAAGAAAACCT 57.541 26.923 0.00 0.00 0.00 3.50
172 176 8.346300 TGAAAACCAAAAGAAACAAAGAAAACC 58.654 29.630 0.00 0.00 0.00 3.27
173 177 9.891828 ATGAAAACCAAAAGAAACAAAGAAAAC 57.108 25.926 0.00 0.00 0.00 2.43
177 204 9.500785 AAGAATGAAAACCAAAAGAAACAAAGA 57.499 25.926 0.00 0.00 0.00 2.52
204 231 9.462606 AAATCTTCCTGACCTATACGAAAAATT 57.537 29.630 0.00 0.00 0.00 1.82
207 234 8.857694 AAAAATCTTCCTGACCTATACGAAAA 57.142 30.769 0.00 0.00 0.00 2.29
219 246 5.929992 ACGTGTATTCGAAAAATCTTCCTGA 59.070 36.000 0.00 0.00 34.70 3.86
914 1052 3.560251 CTACCCCAGATGGCCCGG 61.560 72.222 0.00 0.00 0.00 5.73
915 1053 1.843376 ATCTACCCCAGATGGCCCG 60.843 63.158 0.00 0.00 42.69 6.13
916 1054 4.339335 ATCTACCCCAGATGGCCC 57.661 61.111 0.00 0.00 42.69 5.80
921 1059 0.769776 CTGGCCCATCTACCCCAGAT 60.770 60.000 0.00 0.00 46.04 2.90
922 1060 1.384502 CTGGCCCATCTACCCCAGA 60.385 63.158 0.00 0.00 46.04 3.86
923 1061 0.988145 TTCTGGCCCATCTACCCCAG 60.988 60.000 0.00 0.00 44.84 4.45
1019 1202 0.033090 GGTTTCGTCGGAGAAGGTGT 59.967 55.000 0.00 0.00 39.69 4.16
1148 1331 3.781307 CAGGGATGCGACGGGGAA 61.781 66.667 0.00 0.00 0.00 3.97
1231 1414 4.033358 GTCACATCACATCACCGATTTCTC 59.967 45.833 0.00 0.00 0.00 2.87
1387 1570 0.601046 CTGACAAGTGCGGCAGAAGA 60.601 55.000 1.18 0.00 0.00 2.87
1538 1733 4.202080 CCTCCCAATGCACACATATCAAAG 60.202 45.833 0.00 0.00 34.62 2.77
1569 1767 3.118884 CCAGGAGAAATTTCAAGCCATGG 60.119 47.826 19.99 16.64 0.00 3.66
1593 1791 2.358737 GCAGACCACAACCCTCCG 60.359 66.667 0.00 0.00 0.00 4.63
1804 2002 6.811665 GCATTTTAACCCCTTGAATTCAGTAC 59.188 38.462 8.41 0.00 0.00 2.73
1835 2033 6.429791 TTCATACATTATGTGGACAAACGG 57.570 37.500 8.26 0.00 37.45 4.44
1872 2070 4.578928 AGTAATGAGTGTCCAAACAACACC 59.421 41.667 2.96 0.00 46.52 4.16
1882 2080 6.127793 TCCTAGAGGTTAGTAATGAGTGTCC 58.872 44.000 0.00 0.00 36.34 4.02
1907 2112 5.310068 AGGATATGCTTCTGATCAAGATGGT 59.690 40.000 0.00 0.00 33.93 3.55
1933 2138 4.330620 CCAGCCAAATAACATTTCACATGC 59.669 41.667 0.00 0.00 0.00 4.06
1945 2150 4.877773 ACCCACATAATCCAGCCAAATAA 58.122 39.130 0.00 0.00 0.00 1.40
1947 2152 3.403228 ACCCACATAATCCAGCCAAAT 57.597 42.857 0.00 0.00 0.00 2.32
1961 2166 3.147553 TGTGCAATAAGCTAACCCACA 57.852 42.857 0.00 0.00 45.94 4.17
2025 2231 9.038803 GTAGTTATGTACTTATGTTAACCTGGC 57.961 37.037 2.48 0.00 38.33 4.85
2088 2294 5.516339 CCAGACAAATACCATTTCGCATTTC 59.484 40.000 0.00 0.00 0.00 2.17
2130 2336 6.817184 AGATTAAGCTAGCCTAATCGTCAAA 58.183 36.000 28.25 2.68 34.95 2.69
2134 2340 5.992217 CCAAAGATTAAGCTAGCCTAATCGT 59.008 40.000 28.25 25.05 34.95 3.73
2136 2342 6.299922 ACCCAAAGATTAAGCTAGCCTAATC 58.700 40.000 27.87 27.87 0.00 1.75
2159 2365 4.576879 CCAAAGTCTTCTAACCACCCTAC 58.423 47.826 0.00 0.00 0.00 3.18
2167 2373 1.271217 ACCCCGCCAAAGTCTTCTAAC 60.271 52.381 0.00 0.00 0.00 2.34
2181 2387 4.038080 CGCCAAAGTCAACCCCGC 62.038 66.667 0.00 0.00 0.00 6.13
2192 2398 2.100584 GCAATGGATTATGACCGCCAAA 59.899 45.455 0.00 0.00 33.51 3.28
2194 2400 1.317613 GCAATGGATTATGACCGCCA 58.682 50.000 0.00 0.00 34.45 5.69
2195 2401 1.317613 TGCAATGGATTATGACCGCC 58.682 50.000 0.00 0.00 0.00 6.13
2198 2404 6.463995 TTAGGTTTGCAATGGATTATGACC 57.536 37.500 0.00 0.95 0.00 4.02
2199 2405 8.947055 AATTTAGGTTTGCAATGGATTATGAC 57.053 30.769 0.00 0.00 0.00 3.06
2209 2426 8.838649 ATCTAAGGGTAATTTAGGTTTGCAAT 57.161 30.769 0.00 0.00 0.00 3.56
2212 2429 8.926715 CAAATCTAAGGGTAATTTAGGTTTGC 57.073 34.615 14.25 0.00 45.06 3.68
2223 2440 6.964464 TGGATAAGCACAAATCTAAGGGTAA 58.036 36.000 0.00 0.00 0.00 2.85
2226 2443 6.966534 ATTGGATAAGCACAAATCTAAGGG 57.033 37.500 0.00 0.00 0.00 3.95
2227 2444 9.657419 AAAAATTGGATAAGCACAAATCTAAGG 57.343 29.630 0.00 0.00 0.00 2.69
2248 2465 5.308825 ACTGAAGTCTGTCCGATGAAAAAT 58.691 37.500 0.00 0.00 0.00 1.82
2258 2475 1.784525 CGACCAACTGAAGTCTGTCC 58.215 55.000 6.70 0.00 0.00 4.02
2278 2495 0.248458 GGGAACAAACAGCACACACG 60.248 55.000 0.00 0.00 0.00 4.49
2334 2551 2.287965 CGTTGCGCACAAACAGCAG 61.288 57.895 11.12 0.00 42.19 4.24
2359 2576 0.673644 CAACCCATCGTCCAGTCCAC 60.674 60.000 0.00 0.00 0.00 4.02
2361 2578 1.078426 CCAACCCATCGTCCAGTCC 60.078 63.158 0.00 0.00 0.00 3.85
2398 2615 1.697982 GCCTGAGAACCCGGGTATTAT 59.302 52.381 30.52 11.96 35.02 1.28
2485 2702 8.826710 TGTCACTTAATGATAAAATCCTTAGCG 58.173 33.333 0.00 0.00 40.28 4.26
2516 2733 1.822990 CAATTCTCCACTGCAATGCCT 59.177 47.619 1.53 0.00 0.00 4.75
2524 2741 3.713858 TGCAAACACAATTCTCCACTG 57.286 42.857 0.00 0.00 0.00 3.66
2624 2841 9.112725 CATTTTTCCCTATCAAATCCCAATTTC 57.887 33.333 0.00 0.00 32.69 2.17
2653 2870 1.066858 TCCTCTGCGTCAACCATCTTC 60.067 52.381 0.00 0.00 0.00 2.87
2777 2994 6.813649 TGTTTTCGACTCTTAATCTCTGATGG 59.186 38.462 0.00 0.00 0.00 3.51
2817 3034 0.792640 GTTCATGAGTCAGCACACCG 59.207 55.000 0.00 0.00 0.00 4.94
2820 3037 4.309933 CAACTAGTTCATGAGTCAGCACA 58.690 43.478 4.77 0.00 0.00 4.57
2851 3068 4.023963 GCTTCCAACTGAAACCTCAACTAC 60.024 45.833 0.00 0.00 31.06 2.73
2856 3073 1.214175 TGGCTTCCAACTGAAACCTCA 59.786 47.619 0.00 0.00 39.53 3.86
2880 3097 7.281098 ACCACGAGACTAGTCTATGAATCTTA 58.719 38.462 27.15 0.00 40.61 2.10
2885 3102 7.555195 TGATTAACCACGAGACTAGTCTATGAA 59.445 37.037 27.15 18.19 40.61 2.57
2913 3131 6.997239 TGATTAAGAGTCGCTCAACTAGTA 57.003 37.500 0.00 0.00 32.06 1.82
2914 3132 5.899120 TGATTAAGAGTCGCTCAACTAGT 57.101 39.130 9.09 0.00 32.06 2.57
3002 3220 2.204291 TTGGCCATCCCCTCTGGT 60.204 61.111 6.09 0.00 36.10 4.00
3036 3254 1.745653 GCAAAATTTCCTCTCCCTCGG 59.254 52.381 0.00 0.00 0.00 4.63
3091 3309 2.009774 AGATGCACAATTGACGCCTAC 58.990 47.619 13.59 8.16 0.00 3.18
3110 3328 2.046892 ACGCTAGGCAGTGGCAAG 60.047 61.111 20.04 9.07 43.71 4.01
3178 3396 5.127031 ACAACAGAACACCAAGTGCTTAAAT 59.873 36.000 0.00 0.00 32.01 1.40
3179 3397 4.461081 ACAACAGAACACCAAGTGCTTAAA 59.539 37.500 0.00 0.00 32.01 1.52
3217 3435 6.112058 TCCAAACAAACAATTTTCAGGGAAG 58.888 36.000 0.00 0.00 0.00 3.46
3268 3486 5.922739 TGTTCTATGCGCATTAATACCAG 57.077 39.130 30.42 17.66 0.00 4.00
3327 3545 4.391523 CCCGGTTTGCTATTTCCATTTTTG 59.608 41.667 0.00 0.00 0.00 2.44
3385 3604 7.811236 TGCAAGAATTTAAAGCAGATTTCAGAG 59.189 33.333 0.00 0.00 32.01 3.35
3493 3712 6.488006 AGCCAATGCACTAATAGAATGGTTAG 59.512 38.462 0.00 0.00 41.13 2.34
3571 3790 1.473258 GGCCTGGTGCACATTCATAA 58.527 50.000 20.43 0.00 43.89 1.90
3589 3808 1.937546 GCAGTGCGGAAGAATTGGGG 61.938 60.000 0.00 0.00 0.00 4.96
3706 3927 5.016173 CCCAACCACAGAAATCCTCAAATA 58.984 41.667 0.00 0.00 0.00 1.40
3716 3937 2.173782 TCTAACAGCCCAACCACAGAAA 59.826 45.455 0.00 0.00 0.00 2.52
3737 3958 5.649395 ACGTGTCATTCATCATCTCCATTTT 59.351 36.000 0.00 0.00 0.00 1.82
3758 3979 2.095919 GCTTTAAATTGGTCGCTCACGT 60.096 45.455 0.00 0.00 41.18 4.49
3759 3980 2.095969 TGCTTTAAATTGGTCGCTCACG 60.096 45.455 0.00 0.00 42.01 4.35
3760 3981 3.552604 TGCTTTAAATTGGTCGCTCAC 57.447 42.857 0.00 0.00 0.00 3.51
3783 4004 2.622942 GCTTCAACATCACCACCTTCAA 59.377 45.455 0.00 0.00 0.00 2.69
3792 4013 4.752101 AGAAGTACACTGCTTCAACATCAC 59.248 41.667 7.63 0.00 43.36 3.06
3817 4038 9.817365 CTTACAGACACAAGATTGACAAAATAG 57.183 33.333 0.00 0.00 0.00 1.73
3870 4091 7.256286 AGTTATACAGCTCTTTATTTCGTCGT 58.744 34.615 0.00 0.00 0.00 4.34
3874 4095 8.893884 CGTCTAGTTATACAGCTCTTTATTTCG 58.106 37.037 0.00 0.00 0.00 3.46
3883 4104 4.897025 ACCACGTCTAGTTATACAGCTC 57.103 45.455 0.00 0.00 0.00 4.09
3884 4105 6.544931 TCATAACCACGTCTAGTTATACAGCT 59.455 38.462 12.41 0.00 37.12 4.24
3926 4148 6.149308 CACAGAACATGAGGCAGTACATAAAA 59.851 38.462 0.00 0.00 0.00 1.52
4047 4269 5.479306 CGGAAAGAGGATAACAGAACAGAA 58.521 41.667 0.00 0.00 0.00 3.02
4056 4278 3.261981 TCAAGCCGGAAAGAGGATAAC 57.738 47.619 5.05 0.00 0.00 1.89
4065 4287 4.280436 TCTGACTATTTCAAGCCGGAAA 57.720 40.909 5.05 0.00 40.72 3.13
4090 4312 4.822026 AGTTATGACGCAGCTTTTCTACT 58.178 39.130 0.00 0.00 0.00 2.57
4091 4313 5.532025 AAGTTATGACGCAGCTTTTCTAC 57.468 39.130 0.00 0.00 0.00 2.59
4104 4326 4.887655 CCCCCTAACCATGAAAGTTATGAC 59.112 45.833 0.00 0.00 0.00 3.06
4119 4341 8.793592 CATATTTAAAAGATAGCACCCCCTAAC 58.206 37.037 0.00 0.00 0.00 2.34
4158 4381 5.102313 GGCTTGAAAGATTATTGGTTTCCG 58.898 41.667 0.00 0.00 30.51 4.30
4266 4489 6.425210 AATCATAGCACATACTAGCAGGAA 57.575 37.500 0.00 0.00 0.00 3.36
4294 4525 3.181464 GGAGGTTAGAACATGCTAGGGAC 60.181 52.174 0.00 0.00 0.00 4.46
4312 4543 6.237915 GCGCATTTTATTCAAATCAAAGGAGG 60.238 38.462 0.30 0.00 32.24 4.30
4314 4545 5.580297 GGCGCATTTTATTCAAATCAAAGGA 59.420 36.000 10.83 0.00 32.24 3.36
4315 4546 5.500610 CGGCGCATTTTATTCAAATCAAAGG 60.501 40.000 10.83 0.00 32.24 3.11
4317 4548 5.061560 GTCGGCGCATTTTATTCAAATCAAA 59.938 36.000 10.83 0.00 32.24 2.69
4319 4550 4.101942 GTCGGCGCATTTTATTCAAATCA 58.898 39.130 10.83 0.00 32.24 2.57
4320 4551 3.485743 GGTCGGCGCATTTTATTCAAATC 59.514 43.478 10.83 0.00 32.24 2.17
4321 4552 3.130340 AGGTCGGCGCATTTTATTCAAAT 59.870 39.130 10.83 0.00 35.24 2.32
4322 4553 2.490115 AGGTCGGCGCATTTTATTCAAA 59.510 40.909 10.83 0.00 0.00 2.69
4323 4554 2.088423 AGGTCGGCGCATTTTATTCAA 58.912 42.857 10.83 0.00 0.00 2.69
4324 4555 1.745232 AGGTCGGCGCATTTTATTCA 58.255 45.000 10.83 0.00 0.00 2.57
4336 4567 5.618236 AGGGTAATTTTTAGATAGGTCGGC 58.382 41.667 0.00 0.00 0.00 5.54
4348 4579 9.923143 GCAGTACAAGATAAAAGGGTAATTTTT 57.077 29.630 0.00 0.00 34.35 1.94
4351 4582 7.410991 AGGCAGTACAAGATAAAAGGGTAATT 58.589 34.615 0.00 0.00 0.00 1.40
4379 4611 8.522830 AGGTTCGACATGAAAATCATACAAAAT 58.477 29.630 0.00 0.00 38.60 1.82
4384 4616 6.761714 AGGTAGGTTCGACATGAAAATCATAC 59.238 38.462 0.00 0.00 38.60 2.39
4423 4658 4.512571 TCGTCCTTTAAGTACCTGCAAAAC 59.487 41.667 0.00 0.00 0.00 2.43
4464 4699 4.037446 GCACCCAAAAGAACTGTTGTATCA 59.963 41.667 0.00 0.00 0.00 2.15
4493 4728 2.224621 TGAACCCAGAAGAGCTTCCAAG 60.225 50.000 6.61 0.00 40.33 3.61
4543 4778 1.530655 CCGGCAGTGGGGAGTTTTT 60.531 57.895 0.00 0.00 0.00 1.94
4557 4794 1.197036 GAGACAAAAACTAGCACCGGC 59.803 52.381 0.00 0.00 41.61 6.13
4644 4882 4.240096 GCAAACAAGAACCATCCAATGAG 58.760 43.478 0.00 0.00 0.00 2.90
4669 4907 8.682128 TTACGAATTAAAGATTTCAACATGCC 57.318 30.769 0.00 0.00 0.00 4.40
4672 4910 9.716507 CCGATTACGAATTAAAGATTTCAACAT 57.283 29.630 0.00 0.00 42.66 2.71
4691 4929 5.986135 AGAGAAACAGCATGATACCGATTAC 59.014 40.000 0.00 0.00 39.69 1.89
4723 4961 0.442310 GCAAATTCGCTGCGAGTGTA 59.558 50.000 24.61 10.83 37.14 2.90
4742 4980 2.638480 TTCCACTGAACTCCCACTTG 57.362 50.000 0.00 0.00 0.00 3.16
4745 4983 2.859165 TGATTCCACTGAACTCCCAC 57.141 50.000 0.00 0.00 32.13 4.61
4759 4997 4.022068 TCACATGTGGGCTTTCTTTGATTC 60.022 41.667 25.16 0.00 0.00 2.52
4771 5009 1.382522 ATCGACAATCACATGTGGGC 58.617 50.000 25.16 11.00 32.57 5.36
4808 5046 4.036734 CACAACACAATCTACAGTTTGGCT 59.963 41.667 5.32 0.00 0.00 4.75
4950 5203 7.059156 AGTCATCTATTTTGAAATGGAGGGAG 58.941 38.462 12.38 3.00 38.91 4.30
4951 5204 6.973642 AGTCATCTATTTTGAAATGGAGGGA 58.026 36.000 12.38 8.08 38.91 4.20
4952 5205 6.830324 TGAGTCATCTATTTTGAAATGGAGGG 59.170 38.462 12.38 6.38 38.91 4.30
4953 5206 7.870509 TGAGTCATCTATTTTGAAATGGAGG 57.129 36.000 7.79 7.79 38.91 4.30
4954 5207 8.954350 AGTTGAGTCATCTATTTTGAAATGGAG 58.046 33.333 1.70 2.49 38.91 3.86
4955 5208 8.868522 AGTTGAGTCATCTATTTTGAAATGGA 57.131 30.769 1.70 5.21 39.67 3.41
4967 5220 8.871125 GGGAAAAGGATATAGTTGAGTCATCTA 58.129 37.037 12.28 12.28 0.00 1.98
4968 5221 7.570607 AGGGAAAAGGATATAGTTGAGTCATCT 59.429 37.037 8.71 8.71 0.00 2.90
4969 5222 7.740805 AGGGAAAAGGATATAGTTGAGTCATC 58.259 38.462 0.00 0.00 0.00 2.92
4970 5223 7.698163 AGGGAAAAGGATATAGTTGAGTCAT 57.302 36.000 0.00 0.00 0.00 3.06
4971 5224 7.510675 AAGGGAAAAGGATATAGTTGAGTCA 57.489 36.000 0.00 0.00 0.00 3.41
4972 5225 8.809468 AAAAGGGAAAAGGATATAGTTGAGTC 57.191 34.615 0.00 0.00 0.00 3.36
4973 5226 7.834681 GGAAAAGGGAAAAGGATATAGTTGAGT 59.165 37.037 0.00 0.00 0.00 3.41
4974 5227 7.285629 GGGAAAAGGGAAAAGGATATAGTTGAG 59.714 40.741 0.00 0.00 0.00 3.02
4975 5228 7.036132 AGGGAAAAGGGAAAAGGATATAGTTGA 60.036 37.037 0.00 0.00 0.00 3.18
4976 5229 7.126061 AGGGAAAAGGGAAAAGGATATAGTTG 58.874 38.462 0.00 0.00 0.00 3.16
4977 5230 7.298678 AGGGAAAAGGGAAAAGGATATAGTT 57.701 36.000 0.00 0.00 0.00 2.24
4978 5231 6.927691 AGGGAAAAGGGAAAAGGATATAGT 57.072 37.500 0.00 0.00 0.00 2.12
4979 5232 9.521841 GATAAGGGAAAAGGGAAAAGGATATAG 57.478 37.037 0.00 0.00 0.00 1.31
4980 5233 9.020644 TGATAAGGGAAAAGGGAAAAGGATATA 57.979 33.333 0.00 0.00 0.00 0.86
4981 5234 7.893482 TGATAAGGGAAAAGGGAAAAGGATAT 58.107 34.615 0.00 0.00 0.00 1.63
4982 5235 7.291991 TGATAAGGGAAAAGGGAAAAGGATA 57.708 36.000 0.00 0.00 0.00 2.59
4983 5236 6.165742 TGATAAGGGAAAAGGGAAAAGGAT 57.834 37.500 0.00 0.00 0.00 3.24
4984 5237 5.608798 TGATAAGGGAAAAGGGAAAAGGA 57.391 39.130 0.00 0.00 0.00 3.36
4985 5238 5.780282 ACTTGATAAGGGAAAAGGGAAAAGG 59.220 40.000 0.00 0.00 0.00 3.11
4986 5239 6.918067 ACTTGATAAGGGAAAAGGGAAAAG 57.082 37.500 0.00 0.00 0.00 2.27
4987 5240 7.532199 AGTACTTGATAAGGGAAAAGGGAAAA 58.468 34.615 0.00 0.00 0.00 2.29
4988 5241 7.098845 AGTACTTGATAAGGGAAAAGGGAAA 57.901 36.000 0.00 0.00 0.00 3.13
4989 5242 6.296836 GGAGTACTTGATAAGGGAAAAGGGAA 60.297 42.308 0.00 0.00 0.00 3.97
4990 5243 5.191124 GGAGTACTTGATAAGGGAAAAGGGA 59.809 44.000 0.00 0.00 0.00 4.20
4991 5244 5.437946 GGAGTACTTGATAAGGGAAAAGGG 58.562 45.833 0.00 0.00 0.00 3.95
4992 5245 5.191921 AGGGAGTACTTGATAAGGGAAAAGG 59.808 44.000 0.00 0.00 0.00 3.11
4993 5246 6.314899 AGGGAGTACTTGATAAGGGAAAAG 57.685 41.667 0.00 0.00 0.00 2.27
4994 5247 5.191124 GGAGGGAGTACTTGATAAGGGAAAA 59.809 44.000 0.00 0.00 0.00 2.29
4995 5248 4.720273 GGAGGGAGTACTTGATAAGGGAAA 59.280 45.833 0.00 0.00 0.00 3.13
4996 5249 4.296056 GGAGGGAGTACTTGATAAGGGAA 58.704 47.826 0.00 0.00 0.00 3.97
4997 5250 3.690438 CGGAGGGAGTACTTGATAAGGGA 60.690 52.174 0.00 0.00 0.00 4.20
4998 5251 2.628657 CGGAGGGAGTACTTGATAAGGG 59.371 54.545 0.00 0.00 0.00 3.95
4999 5252 3.297736 ACGGAGGGAGTACTTGATAAGG 58.702 50.000 0.00 0.00 0.00 2.69
5000 5253 4.202131 GGAACGGAGGGAGTACTTGATAAG 60.202 50.000 0.00 0.00 0.00 1.73
5001 5254 3.703052 GGAACGGAGGGAGTACTTGATAA 59.297 47.826 0.00 0.00 0.00 1.75
5002 5255 3.294214 GGAACGGAGGGAGTACTTGATA 58.706 50.000 0.00 0.00 0.00 2.15
5003 5256 2.108970 GGAACGGAGGGAGTACTTGAT 58.891 52.381 0.00 0.00 0.00 2.57
5004 5257 1.203087 TGGAACGGAGGGAGTACTTGA 60.203 52.381 0.00 0.00 0.00 3.02
5005 5258 1.263356 TGGAACGGAGGGAGTACTTG 58.737 55.000 0.00 0.00 0.00 3.16
5006 5259 2.019807 TTGGAACGGAGGGAGTACTT 57.980 50.000 0.00 0.00 0.00 2.24
5007 5260 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
5008 5261 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
5009 5262 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
5010 5263 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
5011 5264 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
5012 5265 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5013 5266 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5014 5267 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
5015 5268 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
5016 5269 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
5017 5270 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
5018 5271 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
5019 5272 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
5020 5273 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
5021 5274 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
5022 5275 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
5032 5285 9.656040 TGTTAAAGTTAGTACAAAGTTGAGTCA 57.344 29.630 0.00 0.00 0.00 3.41
5033 5286 9.911980 GTGTTAAAGTTAGTACAAAGTTGAGTC 57.088 33.333 0.00 0.00 0.00 3.36
5034 5287 9.439500 TGTGTTAAAGTTAGTACAAAGTTGAGT 57.561 29.630 0.00 0.00 0.00 3.41
5041 5294 9.843334 CCAACTTTGTGTTAAAGTTAGTACAAA 57.157 29.630 15.03 0.00 45.57 2.83
5042 5295 9.228949 TCCAACTTTGTGTTAAAGTTAGTACAA 57.771 29.630 15.03 0.00 45.57 2.41
5043 5296 8.789825 TCCAACTTTGTGTTAAAGTTAGTACA 57.210 30.769 15.03 0.00 45.57 2.90
5044 5297 9.874215 GATCCAACTTTGTGTTAAAGTTAGTAC 57.126 33.333 15.03 6.67 45.57 2.73
5045 5298 9.616156 TGATCCAACTTTGTGTTAAAGTTAGTA 57.384 29.630 15.03 6.64 45.57 1.82
5046 5299 8.514330 TGATCCAACTTTGTGTTAAAGTTAGT 57.486 30.769 15.03 6.67 45.57 2.24
5047 5300 9.965824 AATGATCCAACTTTGTGTTAAAGTTAG 57.034 29.630 15.03 9.89 45.57 2.34
5050 5303 9.744468 GTAAATGATCCAACTTTGTGTTAAAGT 57.256 29.630 0.00 0.00 41.82 2.66
5051 5304 9.743057 TGTAAATGATCCAACTTTGTGTTAAAG 57.257 29.630 0.00 0.00 37.07 1.85
5054 5307 9.743057 CTTTGTAAATGATCCAACTTTGTGTTA 57.257 29.630 0.00 0.00 37.07 2.41
5055 5308 8.257306 ACTTTGTAAATGATCCAACTTTGTGTT 58.743 29.630 0.00 0.00 39.92 3.32
5056 5309 7.781056 ACTTTGTAAATGATCCAACTTTGTGT 58.219 30.769 0.00 0.00 0.00 3.72
5057 5310 8.542132 CAACTTTGTAAATGATCCAACTTTGTG 58.458 33.333 0.00 0.00 0.00 3.33
5058 5311 7.710475 CCAACTTTGTAAATGATCCAACTTTGT 59.290 33.333 0.00 0.00 0.00 2.83
5059 5312 7.925483 TCCAACTTTGTAAATGATCCAACTTTG 59.075 33.333 0.00 0.00 0.00 2.77
5060 5313 8.017418 TCCAACTTTGTAAATGATCCAACTTT 57.983 30.769 0.00 0.00 0.00 2.66
5061 5314 7.595819 TCCAACTTTGTAAATGATCCAACTT 57.404 32.000 0.00 0.00 0.00 2.66
5062 5315 7.451255 TGATCCAACTTTGTAAATGATCCAACT 59.549 33.333 0.00 0.00 0.00 3.16
5063 5316 7.601856 TGATCCAACTTTGTAAATGATCCAAC 58.398 34.615 0.00 0.00 0.00 3.77
5064 5317 7.773489 TGATCCAACTTTGTAAATGATCCAA 57.227 32.000 0.00 0.00 0.00 3.53
5065 5318 7.835682 AGATGATCCAACTTTGTAAATGATCCA 59.164 33.333 0.00 0.00 0.00 3.41
5066 5319 8.230472 AGATGATCCAACTTTGTAAATGATCC 57.770 34.615 0.00 0.00 0.00 3.36
5075 5328 9.696917 GTTTCAAAATAGATGATCCAACTTTGT 57.303 29.630 0.00 0.00 0.00 2.83
5076 5329 8.853345 CGTTTCAAAATAGATGATCCAACTTTG 58.147 33.333 0.00 0.00 0.00 2.77
5077 5330 8.028938 CCGTTTCAAAATAGATGATCCAACTTT 58.971 33.333 0.00 0.00 0.00 2.66
5078 5331 7.393234 TCCGTTTCAAAATAGATGATCCAACTT 59.607 33.333 0.00 0.00 0.00 2.66
5079 5332 6.884295 TCCGTTTCAAAATAGATGATCCAACT 59.116 34.615 0.00 0.00 0.00 3.16
5080 5333 7.083875 TCCGTTTCAAAATAGATGATCCAAC 57.916 36.000 0.00 0.00 0.00 3.77
5081 5334 6.318648 CCTCCGTTTCAAAATAGATGATCCAA 59.681 38.462 0.00 0.00 0.00 3.53
5082 5335 5.822519 CCTCCGTTTCAAAATAGATGATCCA 59.177 40.000 0.00 0.00 0.00 3.41
5083 5336 5.239525 CCCTCCGTTTCAAAATAGATGATCC 59.760 44.000 0.00 0.00 0.00 3.36
5084 5337 6.055588 TCCCTCCGTTTCAAAATAGATGATC 58.944 40.000 0.00 0.00 0.00 2.92
5085 5338 6.001449 TCCCTCCGTTTCAAAATAGATGAT 57.999 37.500 0.00 0.00 0.00 2.45
5086 5339 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
5087 5340 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
5088 5341 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
5089 5342 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
5090 5343 5.527582 CCATACTCCCTCCGTTTCAAAATAG 59.472 44.000 0.00 0.00 0.00 1.73
5091 5344 5.045432 ACCATACTCCCTCCGTTTCAAAATA 60.045 40.000 0.00 0.00 0.00 1.40
5092 5345 4.263771 ACCATACTCCCTCCGTTTCAAAAT 60.264 41.667 0.00 0.00 0.00 1.82
5093 5346 3.073356 ACCATACTCCCTCCGTTTCAAAA 59.927 43.478 0.00 0.00 0.00 2.44
5094 5347 2.640826 ACCATACTCCCTCCGTTTCAAA 59.359 45.455 0.00 0.00 0.00 2.69
5095 5348 2.262637 ACCATACTCCCTCCGTTTCAA 58.737 47.619 0.00 0.00 0.00 2.69
5096 5349 1.946984 ACCATACTCCCTCCGTTTCA 58.053 50.000 0.00 0.00 0.00 2.69
5097 5350 3.345508 AAACCATACTCCCTCCGTTTC 57.654 47.619 0.00 0.00 0.00 2.78
5098 5351 3.329814 AGAAAACCATACTCCCTCCGTTT 59.670 43.478 0.00 0.00 0.00 3.60
5099 5352 2.910977 AGAAAACCATACTCCCTCCGTT 59.089 45.455 0.00 0.00 0.00 4.44
5100 5353 2.500504 GAGAAAACCATACTCCCTCCGT 59.499 50.000 0.00 0.00 0.00 4.69
5101 5354 2.500098 TGAGAAAACCATACTCCCTCCG 59.500 50.000 0.00 0.00 0.00 4.63
5102 5355 4.080299 ACATGAGAAAACCATACTCCCTCC 60.080 45.833 0.00 0.00 0.00 4.30
5103 5356 5.104259 ACATGAGAAAACCATACTCCCTC 57.896 43.478 0.00 0.00 0.00 4.30
5104 5357 5.520748 AACATGAGAAAACCATACTCCCT 57.479 39.130 0.00 0.00 0.00 4.20
5105 5358 5.125578 GGAAACATGAGAAAACCATACTCCC 59.874 44.000 0.00 0.00 0.00 4.30
5106 5359 5.710099 TGGAAACATGAGAAAACCATACTCC 59.290 40.000 0.00 0.00 33.40 3.85
5107 5360 6.206634 TGTGGAAACATGAGAAAACCATACTC 59.793 38.462 0.00 0.00 46.14 2.59
5108 5361 6.068010 TGTGGAAACATGAGAAAACCATACT 58.932 36.000 0.00 0.00 46.14 2.12
5109 5362 6.016276 ACTGTGGAAACATGAGAAAACCATAC 60.016 38.462 0.00 0.00 46.14 2.39
5110 5363 6.068010 ACTGTGGAAACATGAGAAAACCATA 58.932 36.000 0.00 0.00 46.14 2.74
5111 5364 4.895297 ACTGTGGAAACATGAGAAAACCAT 59.105 37.500 0.00 0.00 46.14 3.55
5263 5521 5.221130 GTGATACGAGCTTATCCCAGTAAC 58.779 45.833 3.50 0.00 0.00 2.50
5283 5541 6.558775 ACTGGAATAATAATAGAGGCTGGTGA 59.441 38.462 0.00 0.00 0.00 4.02
5319 5577 4.337555 GCTCGACTGTACCCATAGAACTTA 59.662 45.833 0.00 0.00 0.00 2.24
5328 5586 1.842052 TATGTGCTCGACTGTACCCA 58.158 50.000 0.00 0.00 0.00 4.51
5633 5891 3.461773 CAGGGCGTGTCCTCGGAT 61.462 66.667 0.00 0.00 34.31 4.18
5655 5913 3.648982 CGCGCTGTGTTGCTTCCA 61.649 61.111 5.56 0.00 0.00 3.53
5666 5924 1.059369 CTTTGTTCGGATCGCGCTG 59.941 57.895 5.56 0.00 0.00 5.18
5695 5953 1.882198 CAAATGCGGTGTTAAGAGCG 58.118 50.000 18.70 18.70 39.82 5.03
5708 5981 6.619874 GCAATGCCAATATATTCAGCAAATGC 60.620 38.462 25.59 25.59 40.58 3.56
5709 5982 6.425417 TGCAATGCCAATATATTCAGCAAATG 59.575 34.615 18.75 19.20 36.95 2.32
5936 6214 1.543429 GCGGCTGCCAAGAATAGGTAT 60.543 52.381 20.29 0.00 33.98 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.