Multiple sequence alignment - TraesCS4A01G242200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G242200 | chr4A | 100.000 | 7939 | 0 | 0 | 1 | 7939 | 552228631 | 552220693 | 0.000000e+00 | 14661.0 |
1 | TraesCS4A01G242200 | chr4A | 94.211 | 1520 | 82 | 6 | 5555 | 7070 | 465121946 | 465123463 | 0.000000e+00 | 2314.0 |
2 | TraesCS4A01G242200 | chr4A | 93.836 | 795 | 33 | 7 | 6459 | 7251 | 653011942 | 653011162 | 0.000000e+00 | 1182.0 |
3 | TraesCS4A01G242200 | chr4A | 94.618 | 353 | 15 | 3 | 1 | 352 | 108411154 | 108410805 | 1.950000e-150 | 544.0 |
4 | TraesCS4A01G242200 | chr4A | 94.068 | 354 | 15 | 4 | 1 | 352 | 161297281 | 161297630 | 4.220000e-147 | 532.0 |
5 | TraesCS4A01G242200 | chr4A | 97.273 | 110 | 3 | 0 | 7283 | 7392 | 533474405 | 533474514 | 3.780000e-43 | 187.0 |
6 | TraesCS4A01G242200 | chr4A | 81.609 | 174 | 30 | 2 | 5383 | 5556 | 715606981 | 715607152 | 8.300000e-30 | 143.0 |
7 | TraesCS4A01G242200 | chr4A | 100.000 | 29 | 0 | 0 | 7249 | 7277 | 492166709 | 492166681 | 4.000000e-03 | 54.7 |
8 | TraesCS4A01G242200 | chr4A | 100.000 | 29 | 0 | 0 | 7249 | 7277 | 693109476 | 693109448 | 4.000000e-03 | 54.7 |
9 | TraesCS4A01G242200 | chr2A | 99.136 | 3242 | 27 | 1 | 2317 | 5557 | 677498809 | 677502050 | 0.000000e+00 | 5830.0 |
10 | TraesCS4A01G242200 | chr2A | 96.802 | 1970 | 58 | 3 | 352 | 2319 | 591090100 | 591092066 | 0.000000e+00 | 3284.0 |
11 | TraesCS4A01G242200 | chr2A | 96.517 | 1665 | 55 | 3 | 5555 | 7218 | 591092066 | 591093728 | 0.000000e+00 | 2750.0 |
12 | TraesCS4A01G242200 | chr2A | 94.527 | 201 | 10 | 1 | 352 | 551 | 660033371 | 660033171 | 7.740000e-80 | 309.0 |
13 | TraesCS4A01G242200 | chr2A | 94.872 | 195 | 9 | 1 | 353 | 546 | 15131976 | 15132170 | 3.600000e-78 | 303.0 |
14 | TraesCS4A01G242200 | chr2A | 93.035 | 201 | 13 | 1 | 352 | 551 | 513874307 | 513874507 | 7.790000e-75 | 292.0 |
15 | TraesCS4A01G242200 | chr2A | 93.085 | 188 | 13 | 0 | 7059 | 7246 | 387017094 | 387017281 | 7.850000e-70 | 276.0 |
16 | TraesCS4A01G242200 | chr2A | 89.320 | 206 | 21 | 1 | 7041 | 7246 | 438229977 | 438229773 | 2.840000e-64 | 257.0 |
17 | TraesCS4A01G242200 | chr2A | 88.732 | 213 | 17 | 7 | 7041 | 7250 | 303686761 | 303686553 | 3.680000e-63 | 254.0 |
18 | TraesCS4A01G242200 | chr3A | 97.931 | 1837 | 31 | 5 | 2318 | 4147 | 21226111 | 21224275 | 0.000000e+00 | 3175.0 |
19 | TraesCS4A01G242200 | chr3A | 95.275 | 1566 | 66 | 6 | 5555 | 7115 | 664911316 | 664912878 | 0.000000e+00 | 2475.0 |
20 | TraesCS4A01G242200 | chr3A | 95.983 | 921 | 17 | 10 | 4318 | 5237 | 21224275 | 21223374 | 0.000000e+00 | 1478.0 |
21 | TraesCS4A01G242200 | chr3A | 87.791 | 901 | 94 | 13 | 341 | 1235 | 664909323 | 664910213 | 0.000000e+00 | 1040.0 |
22 | TraesCS4A01G242200 | chr3A | 97.516 | 322 | 8 | 0 | 5235 | 5556 | 21217743 | 21217422 | 1.160000e-152 | 551.0 |
23 | TraesCS4A01G242200 | chr3A | 94.051 | 353 | 16 | 4 | 1 | 352 | 137469672 | 137470020 | 1.520000e-146 | 531.0 |
24 | TraesCS4A01G242200 | chr3A | 83.333 | 120 | 20 | 0 | 5420 | 5539 | 429245409 | 429245290 | 2.340000e-20 | 111.0 |
25 | TraesCS4A01G242200 | chr3A | 96.970 | 33 | 0 | 1 | 7249 | 7280 | 536585315 | 536585283 | 4.000000e-03 | 54.7 |
26 | TraesCS4A01G242200 | chr2B | 93.886 | 1979 | 98 | 17 | 353 | 2319 | 247551202 | 247553169 | 0.000000e+00 | 2963.0 |
27 | TraesCS4A01G242200 | chr2B | 93.387 | 1981 | 104 | 20 | 353 | 2319 | 281534351 | 281532384 | 0.000000e+00 | 2907.0 |
28 | TraesCS4A01G242200 | chr2B | 92.825 | 1979 | 111 | 17 | 352 | 2319 | 269878571 | 269880529 | 0.000000e+00 | 2839.0 |
29 | TraesCS4A01G242200 | chr2B | 93.683 | 1583 | 90 | 8 | 5555 | 7133 | 686782472 | 686784048 | 0.000000e+00 | 2361.0 |
30 | TraesCS4A01G242200 | chr2B | 91.116 | 1272 | 92 | 15 | 2797 | 4059 | 639736517 | 639737776 | 0.000000e+00 | 1703.0 |
31 | TraesCS4A01G242200 | chr2B | 91.642 | 335 | 27 | 1 | 2318 | 2651 | 639736138 | 639736472 | 5.610000e-126 | 462.0 |
32 | TraesCS4A01G242200 | chr2B | 87.571 | 354 | 20 | 5 | 4061 | 4413 | 639737830 | 639738160 | 9.660000e-104 | 388.0 |
33 | TraesCS4A01G242200 | chr2B | 91.440 | 257 | 17 | 4 | 4412 | 4667 | 639738198 | 639738450 | 1.640000e-91 | 348.0 |
34 | TraesCS4A01G242200 | chr2B | 89.796 | 98 | 10 | 0 | 4971 | 5068 | 639738450 | 639738547 | 8.360000e-25 | 126.0 |
35 | TraesCS4A01G242200 | chr6B | 93.532 | 1979 | 106 | 16 | 353 | 2319 | 154307889 | 154309857 | 0.000000e+00 | 2926.0 |
36 | TraesCS4A01G242200 | chr6B | 95.218 | 1694 | 72 | 5 | 5555 | 7246 | 483464124 | 483465810 | 0.000000e+00 | 2671.0 |
37 | TraesCS4A01G242200 | chr6B | 96.970 | 1518 | 41 | 4 | 5555 | 7070 | 177081550 | 177080036 | 0.000000e+00 | 2543.0 |
38 | TraesCS4A01G242200 | chr6B | 97.082 | 891 | 24 | 2 | 1430 | 2319 | 177082439 | 177081550 | 0.000000e+00 | 1500.0 |
39 | TraesCS4A01G242200 | chr6B | 88.539 | 890 | 85 | 15 | 353 | 1235 | 483462153 | 483463032 | 0.000000e+00 | 1062.0 |
40 | TraesCS4A01G242200 | chr6B | 81.522 | 184 | 32 | 2 | 5374 | 5557 | 363933893 | 363934074 | 4.960000e-32 | 150.0 |
41 | TraesCS4A01G242200 | chr6B | 100.000 | 29 | 0 | 0 | 7249 | 7277 | 204617849 | 204617877 | 4.000000e-03 | 54.7 |
42 | TraesCS4A01G242200 | chr5B | 93.431 | 1979 | 106 | 18 | 353 | 2319 | 566408983 | 566407017 | 0.000000e+00 | 2913.0 |
43 | TraesCS4A01G242200 | chr5B | 93.368 | 573 | 37 | 1 | 1276 | 1847 | 397830712 | 397831284 | 0.000000e+00 | 846.0 |
44 | TraesCS4A01G242200 | chr3B | 92.417 | 1978 | 128 | 16 | 353 | 2319 | 738242397 | 738244363 | 0.000000e+00 | 2802.0 |
45 | TraesCS4A01G242200 | chr3B | 100.000 | 29 | 0 | 0 | 7249 | 7277 | 484048085 | 484048113 | 4.000000e-03 | 54.7 |
46 | TraesCS4A01G242200 | chr4D | 96.535 | 1645 | 54 | 3 | 5609 | 7250 | 45248080 | 45249724 | 0.000000e+00 | 2719.0 |
47 | TraesCS4A01G242200 | chr4D | 92.644 | 503 | 37 | 0 | 7435 | 7937 | 46629324 | 46629826 | 0.000000e+00 | 725.0 |
48 | TraesCS4A01G242200 | chr1B | 96.708 | 1519 | 45 | 4 | 5555 | 7070 | 27643369 | 27644885 | 0.000000e+00 | 2523.0 |
49 | TraesCS4A01G242200 | chr1B | 94.182 | 275 | 14 | 2 | 6977 | 7250 | 87146722 | 87146995 | 1.230000e-112 | 418.0 |
50 | TraesCS4A01G242200 | chr6D | 95.363 | 1596 | 46 | 7 | 3261 | 4854 | 400734379 | 400735948 | 0.000000e+00 | 2512.0 |
51 | TraesCS4A01G242200 | chr6D | 96.308 | 948 | 29 | 4 | 2319 | 3265 | 400733176 | 400734118 | 0.000000e+00 | 1552.0 |
52 | TraesCS4A01G242200 | chr6D | 94.924 | 591 | 27 | 2 | 4966 | 5556 | 400742082 | 400742669 | 0.000000e+00 | 922.0 |
53 | TraesCS4A01G242200 | chr6D | 93.939 | 132 | 6 | 2 | 4849 | 4980 | 400741860 | 400741989 | 1.750000e-46 | 198.0 |
54 | TraesCS4A01G242200 | chr6D | 79.891 | 184 | 33 | 4 | 5374 | 5557 | 145006137 | 145006316 | 1.800000e-26 | 132.0 |
55 | TraesCS4A01G242200 | chr4B | 96.050 | 1519 | 55 | 4 | 5555 | 7071 | 569527590 | 569529105 | 0.000000e+00 | 2468.0 |
56 | TraesCS4A01G242200 | chr4B | 97.082 | 891 | 25 | 1 | 1430 | 2319 | 569526700 | 569527590 | 0.000000e+00 | 1500.0 |
57 | TraesCS4A01G242200 | chr4B | 89.035 | 456 | 50 | 0 | 7422 | 7877 | 68131040 | 68131495 | 4.160000e-157 | 566.0 |
58 | TraesCS4A01G242200 | chr4B | 83.051 | 177 | 28 | 2 | 5380 | 5556 | 114770098 | 114770272 | 8.250000e-35 | 159.0 |
59 | TraesCS4A01G242200 | chr4B | 100.000 | 30 | 0 | 0 | 7249 | 7278 | 83461072 | 83461101 | 1.000000e-03 | 56.5 |
60 | TraesCS4A01G242200 | chr5A | 91.896 | 617 | 46 | 4 | 1236 | 1851 | 439548114 | 439548727 | 0.000000e+00 | 859.0 |
61 | TraesCS4A01G242200 | chr5A | 93.785 | 354 | 17 | 4 | 1 | 352 | 306103813 | 306104163 | 1.960000e-145 | 527.0 |
62 | TraesCS4A01G242200 | chr5A | 93.768 | 353 | 18 | 3 | 1 | 352 | 656620736 | 656620387 | 1.960000e-145 | 527.0 |
63 | TraesCS4A01G242200 | chr5A | 83.942 | 137 | 22 | 0 | 5420 | 5556 | 29062673 | 29062537 | 1.800000e-26 | 132.0 |
64 | TraesCS4A01G242200 | chr5D | 92.096 | 582 | 30 | 6 | 1272 | 1851 | 338653028 | 338653595 | 0.000000e+00 | 806.0 |
65 | TraesCS4A01G242200 | chr2D | 91.382 | 557 | 30 | 6 | 3528 | 4068 | 37087069 | 37087623 | 0.000000e+00 | 747.0 |
66 | TraesCS4A01G242200 | chr2D | 92.516 | 481 | 29 | 5 | 3055 | 3533 | 37077336 | 37077811 | 0.000000e+00 | 682.0 |
67 | TraesCS4A01G242200 | chr2D | 88.201 | 339 | 20 | 6 | 2317 | 2655 | 37075052 | 37075370 | 3.470000e-103 | 387.0 |
68 | TraesCS4A01G242200 | chr2D | 91.262 | 206 | 17 | 1 | 4061 | 4265 | 37087668 | 37087873 | 6.070000e-71 | 279.0 |
69 | TraesCS4A01G242200 | chr7B | 88.408 | 647 | 35 | 14 | 2787 | 3419 | 748339300 | 748338680 | 0.000000e+00 | 743.0 |
70 | TraesCS4A01G242200 | chr7B | 91.520 | 342 | 27 | 2 | 2316 | 2655 | 748339676 | 748339335 | 3.350000e-128 | 470.0 |
71 | TraesCS4A01G242200 | chr7B | 89.815 | 324 | 31 | 2 | 3420 | 3741 | 748337048 | 748336725 | 1.590000e-111 | 414.0 |
72 | TraesCS4A01G242200 | chr7B | 76.959 | 217 | 36 | 9 | 2807 | 3023 | 366008041 | 366008243 | 2.340000e-20 | 111.0 |
73 | TraesCS4A01G242200 | chrUn | 100.000 | 385 | 0 | 0 | 2943 | 3327 | 480766938 | 480766554 | 0.000000e+00 | 712.0 |
74 | TraesCS4A01G242200 | chr7D | 94.366 | 355 | 14 | 5 | 1 | 352 | 3343615 | 3343966 | 2.520000e-149 | 540.0 |
75 | TraesCS4A01G242200 | chr7D | 92.126 | 254 | 18 | 2 | 6993 | 7246 | 561631868 | 561631617 | 2.720000e-94 | 357.0 |
76 | TraesCS4A01G242200 | chr7A | 94.587 | 351 | 15 | 3 | 3 | 352 | 553331524 | 553331177 | 2.520000e-149 | 540.0 |
77 | TraesCS4A01G242200 | chr7A | 94.068 | 354 | 15 | 5 | 1 | 352 | 429616571 | 429616920 | 4.220000e-147 | 532.0 |
78 | TraesCS4A01G242200 | chr6A | 93.785 | 354 | 16 | 4 | 1 | 352 | 488580265 | 488579916 | 1.960000e-145 | 527.0 |
79 | TraesCS4A01G242200 | chr3D | 75.081 | 309 | 39 | 14 | 4107 | 4413 | 168407224 | 168407496 | 8.420000e-20 | 110.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G242200 | chr4A | 552220693 | 552228631 | 7938 | True | 14661.000000 | 14661 | 100.000000 | 1 | 7939 | 1 | chr4A.!!$R3 | 7938 |
1 | TraesCS4A01G242200 | chr4A | 465121946 | 465123463 | 1517 | False | 2314.000000 | 2314 | 94.211000 | 5555 | 7070 | 1 | chr4A.!!$F2 | 1515 |
2 | TraesCS4A01G242200 | chr4A | 653011162 | 653011942 | 780 | True | 1182.000000 | 1182 | 93.836000 | 6459 | 7251 | 1 | chr4A.!!$R4 | 792 |
3 | TraesCS4A01G242200 | chr2A | 677498809 | 677502050 | 3241 | False | 5830.000000 | 5830 | 99.136000 | 2317 | 5557 | 1 | chr2A.!!$F4 | 3240 |
4 | TraesCS4A01G242200 | chr2A | 591090100 | 591093728 | 3628 | False | 3017.000000 | 3284 | 96.659500 | 352 | 7218 | 2 | chr2A.!!$F5 | 6866 |
5 | TraesCS4A01G242200 | chr3A | 21223374 | 21226111 | 2737 | True | 2326.500000 | 3175 | 96.957000 | 2318 | 5237 | 2 | chr3A.!!$R4 | 2919 |
6 | TraesCS4A01G242200 | chr3A | 664909323 | 664912878 | 3555 | False | 1757.500000 | 2475 | 91.533000 | 341 | 7115 | 2 | chr3A.!!$F2 | 6774 |
7 | TraesCS4A01G242200 | chr2B | 247551202 | 247553169 | 1967 | False | 2963.000000 | 2963 | 93.886000 | 353 | 2319 | 1 | chr2B.!!$F1 | 1966 |
8 | TraesCS4A01G242200 | chr2B | 281532384 | 281534351 | 1967 | True | 2907.000000 | 2907 | 93.387000 | 353 | 2319 | 1 | chr2B.!!$R1 | 1966 |
9 | TraesCS4A01G242200 | chr2B | 269878571 | 269880529 | 1958 | False | 2839.000000 | 2839 | 92.825000 | 352 | 2319 | 1 | chr2B.!!$F2 | 1967 |
10 | TraesCS4A01G242200 | chr2B | 686782472 | 686784048 | 1576 | False | 2361.000000 | 2361 | 93.683000 | 5555 | 7133 | 1 | chr2B.!!$F3 | 1578 |
11 | TraesCS4A01G242200 | chr2B | 639736138 | 639738547 | 2409 | False | 605.400000 | 1703 | 90.313000 | 2318 | 5068 | 5 | chr2B.!!$F4 | 2750 |
12 | TraesCS4A01G242200 | chr6B | 154307889 | 154309857 | 1968 | False | 2926.000000 | 2926 | 93.532000 | 353 | 2319 | 1 | chr6B.!!$F1 | 1966 |
13 | TraesCS4A01G242200 | chr6B | 177080036 | 177082439 | 2403 | True | 2021.500000 | 2543 | 97.026000 | 1430 | 7070 | 2 | chr6B.!!$R1 | 5640 |
14 | TraesCS4A01G242200 | chr6B | 483462153 | 483465810 | 3657 | False | 1866.500000 | 2671 | 91.878500 | 353 | 7246 | 2 | chr6B.!!$F4 | 6893 |
15 | TraesCS4A01G242200 | chr5B | 566407017 | 566408983 | 1966 | True | 2913.000000 | 2913 | 93.431000 | 353 | 2319 | 1 | chr5B.!!$R1 | 1966 |
16 | TraesCS4A01G242200 | chr5B | 397830712 | 397831284 | 572 | False | 846.000000 | 846 | 93.368000 | 1276 | 1847 | 1 | chr5B.!!$F1 | 571 |
17 | TraesCS4A01G242200 | chr3B | 738242397 | 738244363 | 1966 | False | 2802.000000 | 2802 | 92.417000 | 353 | 2319 | 1 | chr3B.!!$F2 | 1966 |
18 | TraesCS4A01G242200 | chr4D | 45248080 | 45249724 | 1644 | False | 2719.000000 | 2719 | 96.535000 | 5609 | 7250 | 1 | chr4D.!!$F1 | 1641 |
19 | TraesCS4A01G242200 | chr4D | 46629324 | 46629826 | 502 | False | 725.000000 | 725 | 92.644000 | 7435 | 7937 | 1 | chr4D.!!$F2 | 502 |
20 | TraesCS4A01G242200 | chr1B | 27643369 | 27644885 | 1516 | False | 2523.000000 | 2523 | 96.708000 | 5555 | 7070 | 1 | chr1B.!!$F1 | 1515 |
21 | TraesCS4A01G242200 | chr6D | 400733176 | 400735948 | 2772 | False | 2032.000000 | 2512 | 95.835500 | 2319 | 4854 | 2 | chr6D.!!$F2 | 2535 |
22 | TraesCS4A01G242200 | chr6D | 400741860 | 400742669 | 809 | False | 560.000000 | 922 | 94.431500 | 4849 | 5556 | 2 | chr6D.!!$F3 | 707 |
23 | TraesCS4A01G242200 | chr4B | 569526700 | 569529105 | 2405 | False | 1984.000000 | 2468 | 96.566000 | 1430 | 7071 | 2 | chr4B.!!$F4 | 5641 |
24 | TraesCS4A01G242200 | chr5A | 439548114 | 439548727 | 613 | False | 859.000000 | 859 | 91.896000 | 1236 | 1851 | 1 | chr5A.!!$F2 | 615 |
25 | TraesCS4A01G242200 | chr5D | 338653028 | 338653595 | 567 | False | 806.000000 | 806 | 92.096000 | 1272 | 1851 | 1 | chr5D.!!$F1 | 579 |
26 | TraesCS4A01G242200 | chr2D | 37075052 | 37077811 | 2759 | False | 534.500000 | 682 | 90.358500 | 2317 | 3533 | 2 | chr2D.!!$F1 | 1216 |
27 | TraesCS4A01G242200 | chr2D | 37087069 | 37087873 | 804 | False | 513.000000 | 747 | 91.322000 | 3528 | 4265 | 2 | chr2D.!!$F2 | 737 |
28 | TraesCS4A01G242200 | chr7B | 748336725 | 748339676 | 2951 | True | 542.333333 | 743 | 89.914333 | 2316 | 3741 | 3 | chr7B.!!$R1 | 1425 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
231 | 232 | 0.105760 | TTTGCTCCTTTTCCAGCCCA | 60.106 | 50.000 | 0.0 | 0.0 | 34.47 | 5.36 | F |
648 | 693 | 0.109342 | AGCCCAGTGAGACAACCAAG | 59.891 | 55.000 | 0.0 | 0.0 | 0.00 | 3.61 | F |
1368 | 1421 | 1.204704 | CGTGCAGATTGGTGGTCTCTA | 59.795 | 52.381 | 0.0 | 0.0 | 0.00 | 2.43 | F |
1380 | 1433 | 3.821033 | GGTGGTCTCTAACTTTGCAACAT | 59.179 | 43.478 | 0.0 | 0.0 | 0.00 | 2.71 | F |
1666 | 1722 | 4.406003 | GGGCTGTCTCTTTCCAATCTACTA | 59.594 | 45.833 | 0.0 | 0.0 | 0.00 | 1.82 | F |
1673 | 1729 | 7.061688 | GTCTCTTTCCAATCTACTAGACCCTA | 58.938 | 42.308 | 0.0 | 0.0 | 0.00 | 3.53 | F |
3813 | 7907 | 6.753744 | GCTAAGCCAACTGATCAATAAAAAGG | 59.246 | 38.462 | 0.0 | 0.0 | 0.00 | 3.11 | F |
4598 | 8850 | 3.706389 | TGAACCCCAGAGATATCCTCA | 57.294 | 47.619 | 0.0 | 0.0 | 44.40 | 3.86 | F |
5868 | 10227 | 0.402504 | TACACGGGGATTTGGCAAGT | 59.597 | 50.000 | 0.0 | 0.0 | 0.00 | 3.16 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1902 | 2404 | 0.254747 | CCCCTAAGCAACCGATGGAA | 59.745 | 55.000 | 0.00 | 0.0 | 0.00 | 3.53 | R |
2034 | 2536 | 1.884926 | CTTCTCGCGCATTCCTCCC | 60.885 | 63.158 | 8.75 | 0.0 | 0.00 | 4.30 | R |
2941 | 3676 | 1.228367 | ACAACCAGCAGGAAGGCAG | 60.228 | 57.895 | 0.35 | 0.0 | 38.69 | 4.85 | R |
3390 | 5843 | 5.594926 | CCTTCCATTGTAATCCAGAAATGC | 58.405 | 41.667 | 0.00 | 0.0 | 0.00 | 3.56 | R |
3813 | 7907 | 6.987386 | ACTAGATGAACTACATACATGCTCC | 58.013 | 40.000 | 0.00 | 0.0 | 39.56 | 4.70 | R |
4276 | 8487 | 4.836825 | CTCTGCCTCACCTTATTTCTCAA | 58.163 | 43.478 | 0.00 | 0.0 | 0.00 | 3.02 | R |
4940 | 9192 | 0.979709 | TAGAGGAGGCTGCAGCATGT | 60.980 | 55.000 | 37.63 | 21.8 | 44.36 | 3.21 | R |
6447 | 10807 | 0.764890 | AGTGGCAGCCAGAGTAACAA | 59.235 | 50.000 | 16.83 | 0.0 | 32.34 | 2.83 | R |
7431 | 11842 | 0.036010 | AGGCATCAACCGTCTCCAAG | 60.036 | 55.000 | 0.00 | 0.0 | 33.69 | 3.61 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
30 | 31 | 1.688772 | CCAAAGATGGGCATCAGAGG | 58.311 | 55.000 | 0.00 | 0.00 | 43.51 | 3.69 |
31 | 32 | 1.688772 | CAAAGATGGGCATCAGAGGG | 58.311 | 55.000 | 0.00 | 0.00 | 40.22 | 4.30 |
32 | 33 | 0.106318 | AAAGATGGGCATCAGAGGGC | 60.106 | 55.000 | 0.00 | 0.00 | 40.22 | 5.19 |
33 | 34 | 0.992431 | AAGATGGGCATCAGAGGGCT | 60.992 | 55.000 | 8.70 | 0.00 | 40.22 | 5.19 |
34 | 35 | 1.228184 | GATGGGCATCAGAGGGCTG | 60.228 | 63.158 | 8.70 | 0.00 | 43.67 | 4.85 |
35 | 36 | 3.432445 | ATGGGCATCAGAGGGCTGC | 62.432 | 63.158 | 8.70 | 0.00 | 42.01 | 5.25 |
38 | 39 | 2.516460 | GCATCAGAGGGCTGCCAG | 60.516 | 66.667 | 22.05 | 7.16 | 42.01 | 4.85 |
39 | 40 | 2.192443 | CATCAGAGGGCTGCCAGG | 59.808 | 66.667 | 22.05 | 6.40 | 42.01 | 4.45 |
40 | 41 | 3.095163 | ATCAGAGGGCTGCCAGGG | 61.095 | 66.667 | 22.05 | 6.77 | 42.01 | 4.45 |
130 | 131 | 2.433436 | CCCCCTTTGGTACTTCTTTCG | 58.567 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
131 | 132 | 1.810755 | CCCCTTTGGTACTTCTTTCGC | 59.189 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
132 | 133 | 1.810755 | CCCTTTGGTACTTCTTTCGCC | 59.189 | 52.381 | 0.00 | 0.00 | 0.00 | 5.54 |
133 | 134 | 1.810755 | CCTTTGGTACTTCTTTCGCCC | 59.189 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
134 | 135 | 2.500229 | CTTTGGTACTTCTTTCGCCCA | 58.500 | 47.619 | 0.00 | 0.00 | 0.00 | 5.36 |
135 | 136 | 2.642154 | TTGGTACTTCTTTCGCCCAA | 57.358 | 45.000 | 0.00 | 0.00 | 0.00 | 4.12 |
136 | 137 | 2.871096 | TGGTACTTCTTTCGCCCAAT | 57.129 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
137 | 138 | 3.985019 | TGGTACTTCTTTCGCCCAATA | 57.015 | 42.857 | 0.00 | 0.00 | 0.00 | 1.90 |
138 | 139 | 4.497291 | TGGTACTTCTTTCGCCCAATAT | 57.503 | 40.909 | 0.00 | 0.00 | 0.00 | 1.28 |
139 | 140 | 4.850680 | TGGTACTTCTTTCGCCCAATATT | 58.149 | 39.130 | 0.00 | 0.00 | 0.00 | 1.28 |
140 | 141 | 5.258051 | TGGTACTTCTTTCGCCCAATATTT | 58.742 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
141 | 142 | 5.712917 | TGGTACTTCTTTCGCCCAATATTTT | 59.287 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
142 | 143 | 6.209788 | TGGTACTTCTTTCGCCCAATATTTTT | 59.790 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
166 | 167 | 7.905604 | TTATATATTCTGAAATGTGCTCCCG | 57.094 | 36.000 | 0.00 | 0.00 | 0.00 | 5.14 |
167 | 168 | 2.496899 | ATTCTGAAATGTGCTCCCGT | 57.503 | 45.000 | 0.00 | 0.00 | 0.00 | 5.28 |
168 | 169 | 1.522668 | TTCTGAAATGTGCTCCCGTG | 58.477 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
169 | 170 | 0.684535 | TCTGAAATGTGCTCCCGTGA | 59.315 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
170 | 171 | 1.071542 | TCTGAAATGTGCTCCCGTGAA | 59.928 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
171 | 172 | 1.466167 | CTGAAATGTGCTCCCGTGAAG | 59.534 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
172 | 173 | 1.202758 | TGAAATGTGCTCCCGTGAAGT | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
173 | 174 | 1.880027 | GAAATGTGCTCCCGTGAAGTT | 59.120 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
174 | 175 | 1.981256 | AATGTGCTCCCGTGAAGTTT | 58.019 | 45.000 | 0.00 | 0.00 | 0.00 | 2.66 |
175 | 176 | 1.523758 | ATGTGCTCCCGTGAAGTTTC | 58.476 | 50.000 | 0.00 | 0.00 | 0.00 | 2.78 |
176 | 177 | 0.179234 | TGTGCTCCCGTGAAGTTTCA | 59.821 | 50.000 | 0.00 | 0.00 | 34.20 | 2.69 |
177 | 178 | 1.305201 | GTGCTCCCGTGAAGTTTCAA | 58.695 | 50.000 | 0.00 | 0.00 | 39.21 | 2.69 |
178 | 179 | 1.264288 | GTGCTCCCGTGAAGTTTCAAG | 59.736 | 52.381 | 0.00 | 0.00 | 39.21 | 3.02 |
184 | 185 | 3.436700 | CCGTGAAGTTTCAAGGCTTTT | 57.563 | 42.857 | 12.68 | 0.00 | 46.76 | 2.27 |
185 | 186 | 3.115554 | CCGTGAAGTTTCAAGGCTTTTG | 58.884 | 45.455 | 12.68 | 0.00 | 46.76 | 2.44 |
186 | 187 | 3.115554 | CGTGAAGTTTCAAGGCTTTTGG | 58.884 | 45.455 | 0.00 | 0.00 | 39.21 | 3.28 |
187 | 188 | 3.181491 | CGTGAAGTTTCAAGGCTTTTGGA | 60.181 | 43.478 | 0.00 | 0.00 | 39.21 | 3.53 |
188 | 189 | 4.363138 | GTGAAGTTTCAAGGCTTTTGGAG | 58.637 | 43.478 | 0.00 | 0.00 | 39.21 | 3.86 |
189 | 190 | 4.097892 | GTGAAGTTTCAAGGCTTTTGGAGA | 59.902 | 41.667 | 0.00 | 0.00 | 39.21 | 3.71 |
190 | 191 | 4.895297 | TGAAGTTTCAAGGCTTTTGGAGAT | 59.105 | 37.500 | 0.00 | 0.00 | 33.55 | 2.75 |
191 | 192 | 4.861102 | AGTTTCAAGGCTTTTGGAGATG | 57.139 | 40.909 | 0.00 | 0.00 | 0.00 | 2.90 |
192 | 193 | 4.218312 | AGTTTCAAGGCTTTTGGAGATGT | 58.782 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
193 | 194 | 4.038402 | AGTTTCAAGGCTTTTGGAGATGTG | 59.962 | 41.667 | 0.00 | 0.00 | 0.00 | 3.21 |
194 | 195 | 1.888512 | TCAAGGCTTTTGGAGATGTGC | 59.111 | 47.619 | 0.00 | 0.00 | 0.00 | 4.57 |
195 | 196 | 1.614903 | CAAGGCTTTTGGAGATGTGCA | 59.385 | 47.619 | 0.00 | 0.00 | 0.00 | 4.57 |
196 | 197 | 1.542492 | AGGCTTTTGGAGATGTGCAG | 58.458 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
197 | 198 | 1.074405 | AGGCTTTTGGAGATGTGCAGA | 59.926 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
198 | 199 | 1.888512 | GGCTTTTGGAGATGTGCAGAA | 59.111 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
199 | 200 | 2.494870 | GGCTTTTGGAGATGTGCAGAAT | 59.505 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
200 | 201 | 3.696051 | GGCTTTTGGAGATGTGCAGAATA | 59.304 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
201 | 202 | 4.201990 | GGCTTTTGGAGATGTGCAGAATAG | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
202 | 203 | 4.201990 | GCTTTTGGAGATGTGCAGAATAGG | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
203 | 204 | 4.574674 | TTTGGAGATGTGCAGAATAGGT | 57.425 | 40.909 | 0.00 | 0.00 | 0.00 | 3.08 |
204 | 205 | 3.827008 | TGGAGATGTGCAGAATAGGTC | 57.173 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
205 | 206 | 3.378512 | TGGAGATGTGCAGAATAGGTCT | 58.621 | 45.455 | 0.00 | 0.00 | 36.88 | 3.85 |
206 | 207 | 3.386078 | TGGAGATGTGCAGAATAGGTCTC | 59.614 | 47.826 | 3.43 | 3.43 | 32.70 | 3.36 |
207 | 208 | 3.640967 | GGAGATGTGCAGAATAGGTCTCT | 59.359 | 47.826 | 10.25 | 0.00 | 32.70 | 3.10 |
208 | 209 | 4.830046 | GGAGATGTGCAGAATAGGTCTCTA | 59.170 | 45.833 | 10.25 | 0.00 | 32.70 | 2.43 |
209 | 210 | 5.303078 | GGAGATGTGCAGAATAGGTCTCTAA | 59.697 | 44.000 | 10.25 | 0.00 | 32.70 | 2.10 |
210 | 211 | 6.014669 | GGAGATGTGCAGAATAGGTCTCTAAT | 60.015 | 42.308 | 10.25 | 0.00 | 32.70 | 1.73 |
211 | 212 | 7.177568 | GGAGATGTGCAGAATAGGTCTCTAATA | 59.822 | 40.741 | 10.25 | 0.00 | 32.70 | 0.98 |
212 | 213 | 8.663209 | AGATGTGCAGAATAGGTCTCTAATAT | 57.337 | 34.615 | 0.00 | 0.00 | 32.70 | 1.28 |
213 | 214 | 9.099071 | AGATGTGCAGAATAGGTCTCTAATATT | 57.901 | 33.333 | 0.00 | 0.00 | 32.70 | 1.28 |
214 | 215 | 9.717942 | GATGTGCAGAATAGGTCTCTAATATTT | 57.282 | 33.333 | 0.00 | 0.00 | 32.70 | 1.40 |
215 | 216 | 8.893219 | TGTGCAGAATAGGTCTCTAATATTTG | 57.107 | 34.615 | 0.00 | 0.00 | 32.70 | 2.32 |
216 | 217 | 7.442364 | TGTGCAGAATAGGTCTCTAATATTTGC | 59.558 | 37.037 | 0.00 | 0.00 | 32.70 | 3.68 |
217 | 218 | 7.659390 | GTGCAGAATAGGTCTCTAATATTTGCT | 59.341 | 37.037 | 0.00 | 0.00 | 32.70 | 3.91 |
218 | 219 | 7.875041 | TGCAGAATAGGTCTCTAATATTTGCTC | 59.125 | 37.037 | 0.00 | 0.00 | 32.70 | 4.26 |
219 | 220 | 7.333174 | GCAGAATAGGTCTCTAATATTTGCTCC | 59.667 | 40.741 | 0.00 | 0.00 | 32.70 | 4.70 |
220 | 221 | 8.592809 | CAGAATAGGTCTCTAATATTTGCTCCT | 58.407 | 37.037 | 0.00 | 3.47 | 32.70 | 3.69 |
221 | 222 | 9.165057 | AGAATAGGTCTCTAATATTTGCTCCTT | 57.835 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
222 | 223 | 9.785982 | GAATAGGTCTCTAATATTTGCTCCTTT | 57.214 | 33.333 | 0.00 | 0.00 | 0.00 | 3.11 |
224 | 225 | 9.785982 | ATAGGTCTCTAATATTTGCTCCTTTTC | 57.214 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
225 | 226 | 7.057264 | AGGTCTCTAATATTTGCTCCTTTTCC | 58.943 | 38.462 | 0.00 | 0.00 | 0.00 | 3.13 |
226 | 227 | 6.828785 | GGTCTCTAATATTTGCTCCTTTTCCA | 59.171 | 38.462 | 0.00 | 0.00 | 0.00 | 3.53 |
227 | 228 | 7.012799 | GGTCTCTAATATTTGCTCCTTTTCCAG | 59.987 | 40.741 | 0.00 | 0.00 | 0.00 | 3.86 |
228 | 229 | 6.543831 | TCTCTAATATTTGCTCCTTTTCCAGC | 59.456 | 38.462 | 0.00 | 0.00 | 36.08 | 4.85 |
229 | 230 | 4.743057 | AATATTTGCTCCTTTTCCAGCC | 57.257 | 40.909 | 0.00 | 0.00 | 34.47 | 4.85 |
230 | 231 | 1.269958 | ATTTGCTCCTTTTCCAGCCC | 58.730 | 50.000 | 0.00 | 0.00 | 34.47 | 5.19 |
231 | 232 | 0.105760 | TTTGCTCCTTTTCCAGCCCA | 60.106 | 50.000 | 0.00 | 0.00 | 34.47 | 5.36 |
232 | 233 | 0.540365 | TTGCTCCTTTTCCAGCCCAG | 60.540 | 55.000 | 0.00 | 0.00 | 34.47 | 4.45 |
233 | 234 | 1.380302 | GCTCCTTTTCCAGCCCAGA | 59.620 | 57.895 | 0.00 | 0.00 | 0.00 | 3.86 |
234 | 235 | 0.251341 | GCTCCTTTTCCAGCCCAGAA | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
235 | 236 | 1.618074 | GCTCCTTTTCCAGCCCAGAAT | 60.618 | 52.381 | 0.00 | 0.00 | 0.00 | 2.40 |
236 | 237 | 2.812658 | CTCCTTTTCCAGCCCAGAATT | 58.187 | 47.619 | 0.00 | 0.00 | 0.00 | 2.17 |
237 | 238 | 2.757314 | CTCCTTTTCCAGCCCAGAATTC | 59.243 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
238 | 239 | 1.827344 | CCTTTTCCAGCCCAGAATTCC | 59.173 | 52.381 | 0.65 | 0.00 | 0.00 | 3.01 |
239 | 240 | 2.528564 | CTTTTCCAGCCCAGAATTCCA | 58.471 | 47.619 | 0.65 | 0.00 | 0.00 | 3.53 |
240 | 241 | 2.220653 | TTTCCAGCCCAGAATTCCAG | 57.779 | 50.000 | 0.65 | 0.00 | 0.00 | 3.86 |
241 | 242 | 0.323725 | TTCCAGCCCAGAATTCCAGC | 60.324 | 55.000 | 0.65 | 2.80 | 0.00 | 4.85 |
242 | 243 | 1.210204 | TCCAGCCCAGAATTCCAGCT | 61.210 | 55.000 | 0.65 | 5.25 | 0.00 | 4.24 |
243 | 244 | 2.490165 | CAGCCCAGAATTCCAGCTG | 58.510 | 57.895 | 20.84 | 20.84 | 44.31 | 4.24 |
244 | 245 | 1.379576 | AGCCCAGAATTCCAGCTGC | 60.380 | 57.895 | 8.66 | 0.00 | 31.23 | 5.25 |
245 | 246 | 2.421399 | GCCCAGAATTCCAGCTGCC | 61.421 | 63.158 | 8.66 | 0.00 | 0.00 | 4.85 |
246 | 247 | 2.117156 | CCCAGAATTCCAGCTGCCG | 61.117 | 63.158 | 8.66 | 0.00 | 0.00 | 5.69 |
247 | 248 | 2.117156 | CCAGAATTCCAGCTGCCGG | 61.117 | 63.158 | 8.66 | 0.00 | 0.00 | 6.13 |
248 | 249 | 2.439156 | AGAATTCCAGCTGCCGGC | 60.439 | 61.111 | 22.73 | 22.73 | 42.19 | 6.13 |
249 | 250 | 2.751436 | GAATTCCAGCTGCCGGCA | 60.751 | 61.111 | 30.59 | 30.59 | 44.79 | 5.69 |
250 | 251 | 2.043652 | AATTCCAGCTGCCGGCAT | 60.044 | 55.556 | 32.87 | 14.47 | 44.79 | 4.40 |
251 | 252 | 1.669999 | GAATTCCAGCTGCCGGCATT | 61.670 | 55.000 | 32.87 | 19.95 | 44.79 | 3.56 |
252 | 253 | 1.669999 | AATTCCAGCTGCCGGCATTC | 61.670 | 55.000 | 32.87 | 24.20 | 44.79 | 2.67 |
253 | 254 | 2.563013 | ATTCCAGCTGCCGGCATTCT | 62.563 | 55.000 | 32.87 | 26.10 | 44.79 | 2.40 |
254 | 255 | 3.207669 | CCAGCTGCCGGCATTCTC | 61.208 | 66.667 | 32.87 | 18.90 | 44.79 | 2.87 |
255 | 256 | 3.207669 | CAGCTGCCGGCATTCTCC | 61.208 | 66.667 | 32.87 | 15.69 | 44.79 | 3.71 |
256 | 257 | 4.496336 | AGCTGCCGGCATTCTCCC | 62.496 | 66.667 | 32.87 | 13.85 | 44.79 | 4.30 |
257 | 258 | 4.496336 | GCTGCCGGCATTCTCCCT | 62.496 | 66.667 | 32.87 | 0.00 | 41.35 | 4.20 |
258 | 259 | 2.203126 | CTGCCGGCATTCTCCCTC | 60.203 | 66.667 | 32.87 | 0.00 | 0.00 | 4.30 |
259 | 260 | 2.688666 | TGCCGGCATTCTCCCTCT | 60.689 | 61.111 | 29.03 | 0.00 | 0.00 | 3.69 |
260 | 261 | 2.262774 | CTGCCGGCATTCTCCCTCTT | 62.263 | 60.000 | 32.87 | 0.00 | 0.00 | 2.85 |
261 | 262 | 1.524849 | GCCGGCATTCTCCCTCTTC | 60.525 | 63.158 | 24.80 | 0.00 | 0.00 | 2.87 |
262 | 263 | 1.907739 | CCGGCATTCTCCCTCTTCA | 59.092 | 57.895 | 0.00 | 0.00 | 0.00 | 3.02 |
263 | 264 | 0.471617 | CCGGCATTCTCCCTCTTCAT | 59.528 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
264 | 265 | 1.590932 | CGGCATTCTCCCTCTTCATG | 58.409 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
265 | 266 | 1.134280 | CGGCATTCTCCCTCTTCATGT | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 3.21 |
266 | 267 | 2.103094 | CGGCATTCTCCCTCTTCATGTA | 59.897 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
267 | 268 | 3.432186 | CGGCATTCTCCCTCTTCATGTAA | 60.432 | 47.826 | 0.00 | 0.00 | 0.00 | 2.41 |
268 | 269 | 4.526970 | GGCATTCTCCCTCTTCATGTAAA | 58.473 | 43.478 | 0.00 | 0.00 | 0.00 | 2.01 |
269 | 270 | 4.336713 | GGCATTCTCCCTCTTCATGTAAAC | 59.663 | 45.833 | 0.00 | 0.00 | 0.00 | 2.01 |
270 | 271 | 4.336713 | GCATTCTCCCTCTTCATGTAAACC | 59.663 | 45.833 | 0.00 | 0.00 | 0.00 | 3.27 |
271 | 272 | 5.749462 | CATTCTCCCTCTTCATGTAAACCT | 58.251 | 41.667 | 0.00 | 0.00 | 0.00 | 3.50 |
272 | 273 | 5.843019 | TTCTCCCTCTTCATGTAAACCTT | 57.157 | 39.130 | 0.00 | 0.00 | 0.00 | 3.50 |
273 | 274 | 5.165961 | TCTCCCTCTTCATGTAAACCTTG | 57.834 | 43.478 | 0.00 | 0.00 | 0.00 | 3.61 |
274 | 275 | 4.597507 | TCTCCCTCTTCATGTAAACCTTGT | 59.402 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
275 | 276 | 5.783360 | TCTCCCTCTTCATGTAAACCTTGTA | 59.217 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
276 | 277 | 6.271391 | TCTCCCTCTTCATGTAAACCTTGTAA | 59.729 | 38.462 | 0.00 | 0.00 | 0.00 | 2.41 |
277 | 278 | 6.843752 | TCCCTCTTCATGTAAACCTTGTAAA | 58.156 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
278 | 279 | 7.291566 | TCCCTCTTCATGTAAACCTTGTAAAA | 58.708 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
279 | 280 | 7.947890 | TCCCTCTTCATGTAAACCTTGTAAAAT | 59.052 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
280 | 281 | 9.238368 | CCCTCTTCATGTAAACCTTGTAAAATA | 57.762 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
294 | 295 | 9.528489 | ACCTTGTAAAATAAGAGAAAATAGGCA | 57.472 | 29.630 | 0.00 | 0.00 | 0.00 | 4.75 |
306 | 307 | 9.905713 | AAGAGAAAATAGGCATAAGTATTGTGA | 57.094 | 29.630 | 0.00 | 0.00 | 39.84 | 3.58 |
327 | 328 | 8.615878 | TGTGATATAATGTGTAATAACAGCCC | 57.384 | 34.615 | 0.00 | 0.00 | 35.91 | 5.19 |
328 | 329 | 8.214364 | TGTGATATAATGTGTAATAACAGCCCA | 58.786 | 33.333 | 0.00 | 0.00 | 35.91 | 5.36 |
329 | 330 | 9.231297 | GTGATATAATGTGTAATAACAGCCCAT | 57.769 | 33.333 | 0.00 | 0.00 | 35.91 | 4.00 |
334 | 335 | 5.766150 | TGTGTAATAACAGCCCATAATGC | 57.234 | 39.130 | 0.00 | 0.00 | 35.91 | 3.56 |
335 | 336 | 5.196695 | TGTGTAATAACAGCCCATAATGCA | 58.803 | 37.500 | 0.00 | 0.00 | 35.91 | 3.96 |
336 | 337 | 5.654209 | TGTGTAATAACAGCCCATAATGCAA | 59.346 | 36.000 | 0.00 | 0.00 | 35.91 | 4.08 |
337 | 338 | 6.323482 | TGTGTAATAACAGCCCATAATGCAAT | 59.677 | 34.615 | 0.00 | 0.00 | 35.91 | 3.56 |
338 | 339 | 7.503902 | TGTGTAATAACAGCCCATAATGCAATA | 59.496 | 33.333 | 0.00 | 0.00 | 35.91 | 1.90 |
339 | 340 | 7.807907 | GTGTAATAACAGCCCATAATGCAATAC | 59.192 | 37.037 | 0.00 | 0.00 | 35.91 | 1.89 |
345 | 346 | 5.355071 | ACAGCCCATAATGCAATACATATCG | 59.645 | 40.000 | 0.00 | 0.00 | 38.34 | 2.92 |
347 | 348 | 6.261603 | CAGCCCATAATGCAATACATATCGAT | 59.738 | 38.462 | 2.16 | 2.16 | 38.34 | 3.59 |
515 | 560 | 4.210120 | CGCTGCTACTAAATGATCTCCAAC | 59.790 | 45.833 | 0.00 | 0.00 | 0.00 | 3.77 |
524 | 569 | 1.227973 | GATCTCCAACGATGCCCCC | 60.228 | 63.158 | 0.00 | 0.00 | 0.00 | 5.40 |
648 | 693 | 0.109342 | AGCCCAGTGAGACAACCAAG | 59.891 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
1041 | 1094 | 1.370778 | CACGCACGTGGTCGAGTTA | 60.371 | 57.895 | 18.88 | 0.00 | 42.00 | 2.24 |
1085 | 1138 | 3.319198 | GGACCAAGGACCTCCGCA | 61.319 | 66.667 | 0.00 | 0.00 | 42.08 | 5.69 |
1170 | 1223 | 4.033709 | CCCCTCTTCTCTGTTCTTCCATA | 58.966 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
1183 | 1236 | 6.552008 | TGTTCTTCCATAAATCCTCTGGTTT | 58.448 | 36.000 | 0.00 | 0.00 | 0.00 | 3.27 |
1184 | 1237 | 6.659242 | TGTTCTTCCATAAATCCTCTGGTTTC | 59.341 | 38.462 | 0.00 | 0.00 | 0.00 | 2.78 |
1185 | 1238 | 6.387192 | TCTTCCATAAATCCTCTGGTTTCA | 57.613 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
1368 | 1421 | 1.204704 | CGTGCAGATTGGTGGTCTCTA | 59.795 | 52.381 | 0.00 | 0.00 | 0.00 | 2.43 |
1380 | 1433 | 3.821033 | GGTGGTCTCTAACTTTGCAACAT | 59.179 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
1406 | 1459 | 5.645929 | TGTTATTGTGCATATCGGTGAAGTT | 59.354 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
1449 | 1502 | 5.352569 | GTCAGTGTGCTAGTATTTTCAGCAT | 59.647 | 40.000 | 0.00 | 0.00 | 46.22 | 3.79 |
1666 | 1722 | 4.406003 | GGGCTGTCTCTTTCCAATCTACTA | 59.594 | 45.833 | 0.00 | 0.00 | 0.00 | 1.82 |
1673 | 1729 | 7.061688 | GTCTCTTTCCAATCTACTAGACCCTA | 58.938 | 42.308 | 0.00 | 0.00 | 0.00 | 3.53 |
2651 | 3156 | 7.575720 | GCTGTTGGCAGTTTCATAGTATTCTTT | 60.576 | 37.037 | 0.00 | 0.00 | 44.32 | 2.52 |
3813 | 7907 | 6.753744 | GCTAAGCCAACTGATCAATAAAAAGG | 59.246 | 38.462 | 0.00 | 0.00 | 0.00 | 3.11 |
4341 | 8552 | 4.823442 | TCCGTCAGTTACTTGTGAAGACTA | 59.177 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
4536 | 8787 | 5.583457 | GTGGGTTGTGTGGTTAGTGTATATC | 59.417 | 44.000 | 0.00 | 0.00 | 0.00 | 1.63 |
4598 | 8850 | 3.706389 | TGAACCCCAGAGATATCCTCA | 57.294 | 47.619 | 0.00 | 0.00 | 44.40 | 3.86 |
4940 | 9192 | 1.382240 | CCAACATAGGCCACCACCA | 59.618 | 57.895 | 5.01 | 0.00 | 0.00 | 4.17 |
5233 | 9590 | 2.660064 | GGGACTCCATGTGAGCCGT | 61.660 | 63.158 | 10.15 | 0.00 | 45.61 | 5.68 |
5520 | 9877 | 4.226427 | AGGCTGCATGTTGAGAGAAATA | 57.774 | 40.909 | 0.50 | 0.00 | 0.00 | 1.40 |
5521 | 9878 | 3.944015 | AGGCTGCATGTTGAGAGAAATAC | 59.056 | 43.478 | 0.50 | 0.00 | 0.00 | 1.89 |
5522 | 9879 | 3.691118 | GGCTGCATGTTGAGAGAAATACA | 59.309 | 43.478 | 0.50 | 0.00 | 0.00 | 2.29 |
5523 | 9880 | 4.156556 | GGCTGCATGTTGAGAGAAATACAA | 59.843 | 41.667 | 0.50 | 0.00 | 0.00 | 2.41 |
5524 | 9881 | 5.163581 | GGCTGCATGTTGAGAGAAATACAAT | 60.164 | 40.000 | 0.50 | 0.00 | 0.00 | 2.71 |
5525 | 9882 | 6.038603 | GGCTGCATGTTGAGAGAAATACAATA | 59.961 | 38.462 | 0.50 | 0.00 | 0.00 | 1.90 |
5526 | 9883 | 7.415541 | GGCTGCATGTTGAGAGAAATACAATAA | 60.416 | 37.037 | 0.50 | 0.00 | 0.00 | 1.40 |
5527 | 9884 | 8.133627 | GCTGCATGTTGAGAGAAATACAATAAT | 58.866 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
5528 | 9885 | 9.447040 | CTGCATGTTGAGAGAAATACAATAATG | 57.553 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
5529 | 9886 | 8.407832 | TGCATGTTGAGAGAAATACAATAATGG | 58.592 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
5530 | 9887 | 7.864379 | GCATGTTGAGAGAAATACAATAATGGG | 59.136 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
5531 | 9888 | 7.880160 | TGTTGAGAGAAATACAATAATGGGG | 57.120 | 36.000 | 0.00 | 0.00 | 0.00 | 4.96 |
5532 | 9889 | 7.638444 | TGTTGAGAGAAATACAATAATGGGGA | 58.362 | 34.615 | 0.00 | 0.00 | 0.00 | 4.81 |
5533 | 9890 | 8.281531 | TGTTGAGAGAAATACAATAATGGGGAT | 58.718 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
5534 | 9891 | 9.793259 | GTTGAGAGAAATACAATAATGGGGATA | 57.207 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
5760 | 10118 | 8.946797 | TCTCTTGAATGGATAGATCATAGTGA | 57.053 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
5868 | 10227 | 0.402504 | TACACGGGGATTTGGCAAGT | 59.597 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5998 | 10357 | 1.118965 | TCCTCCGTCCAAGTTGAGCA | 61.119 | 55.000 | 3.87 | 0.00 | 0.00 | 4.26 |
6201 | 10560 | 4.343526 | TGCACACCTTGGTAATTTGAACAT | 59.656 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
6339 | 10698 | 4.194640 | ACCATCTGATCGTTTCATGGAAG | 58.805 | 43.478 | 13.84 | 0.00 | 36.85 | 3.46 |
6390 | 10749 | 3.484407 | AGATGCCTAGAACAATCCATGC | 58.516 | 45.455 | 0.00 | 0.00 | 0.00 | 4.06 |
6462 | 10822 | 4.191544 | TGATGTATTGTTACTCTGGCTGC | 58.808 | 43.478 | 0.00 | 0.00 | 0.00 | 5.25 |
6502 | 10862 | 7.594758 | TGTGCATGTGCTAGAAAGAAATAAAAC | 59.405 | 33.333 | 6.55 | 0.00 | 42.66 | 2.43 |
6653 | 11013 | 3.220999 | CTGTGAAGACCGGCGACCA | 62.221 | 63.158 | 9.30 | 0.00 | 0.00 | 4.02 |
7083 | 11494 | 0.533491 | TAGCGCGGGTGTGAAATAGT | 59.467 | 50.000 | 8.83 | 0.00 | 0.00 | 2.12 |
7102 | 11513 | 1.261938 | TAGTAGCGTGGGTGGCACAT | 61.262 | 55.000 | 20.82 | 0.15 | 44.52 | 3.21 |
7246 | 11657 | 5.456548 | CTAGTAGCCTTTTCCCTAGTAGC | 57.543 | 47.826 | 0.00 | 0.00 | 33.34 | 3.58 |
7251 | 11662 | 3.516700 | AGCCTTTTCCCTAGTAGCGTAAA | 59.483 | 43.478 | 0.00 | 0.00 | 0.00 | 2.01 |
7252 | 11663 | 4.019950 | AGCCTTTTCCCTAGTAGCGTAAAA | 60.020 | 41.667 | 0.00 | 0.00 | 0.00 | 1.52 |
7253 | 11664 | 4.331992 | GCCTTTTCCCTAGTAGCGTAAAAG | 59.668 | 45.833 | 15.81 | 15.81 | 34.99 | 2.27 |
7254 | 11665 | 4.331992 | CCTTTTCCCTAGTAGCGTAAAAGC | 59.668 | 45.833 | 16.63 | 0.00 | 34.27 | 3.51 |
7255 | 11666 | 4.540359 | TTTCCCTAGTAGCGTAAAAGCA | 57.460 | 40.909 | 0.00 | 0.00 | 40.15 | 3.91 |
7256 | 11667 | 4.748277 | TTCCCTAGTAGCGTAAAAGCAT | 57.252 | 40.909 | 0.00 | 0.00 | 40.15 | 3.79 |
7257 | 11668 | 4.054780 | TCCCTAGTAGCGTAAAAGCATG | 57.945 | 45.455 | 0.00 | 0.00 | 40.15 | 4.06 |
7258 | 11669 | 3.702548 | TCCCTAGTAGCGTAAAAGCATGA | 59.297 | 43.478 | 0.00 | 0.00 | 40.15 | 3.07 |
7259 | 11670 | 4.344102 | TCCCTAGTAGCGTAAAAGCATGAT | 59.656 | 41.667 | 0.00 | 0.00 | 40.15 | 2.45 |
7260 | 11671 | 4.449068 | CCCTAGTAGCGTAAAAGCATGATG | 59.551 | 45.833 | 0.00 | 0.00 | 40.15 | 3.07 |
7261 | 11672 | 5.289595 | CCTAGTAGCGTAAAAGCATGATGA | 58.710 | 41.667 | 0.00 | 0.00 | 40.15 | 2.92 |
7262 | 11673 | 5.753438 | CCTAGTAGCGTAAAAGCATGATGAA | 59.247 | 40.000 | 0.00 | 0.00 | 40.15 | 2.57 |
7263 | 11674 | 6.257849 | CCTAGTAGCGTAAAAGCATGATGAAA | 59.742 | 38.462 | 0.00 | 0.00 | 40.15 | 2.69 |
7264 | 11675 | 6.494893 | AGTAGCGTAAAAGCATGATGAAAA | 57.505 | 33.333 | 0.00 | 0.00 | 40.15 | 2.29 |
7265 | 11676 | 6.908825 | AGTAGCGTAAAAGCATGATGAAAAA | 58.091 | 32.000 | 0.00 | 0.00 | 40.15 | 1.94 |
7266 | 11677 | 7.538575 | AGTAGCGTAAAAGCATGATGAAAAAT | 58.461 | 30.769 | 0.00 | 0.00 | 40.15 | 1.82 |
7267 | 11678 | 6.636666 | AGCGTAAAAGCATGATGAAAAATG | 57.363 | 33.333 | 0.00 | 0.00 | 40.15 | 2.32 |
7268 | 11679 | 6.158598 | AGCGTAAAAGCATGATGAAAAATGT | 58.841 | 32.000 | 0.00 | 0.00 | 40.15 | 2.71 |
7269 | 11680 | 7.312154 | AGCGTAAAAGCATGATGAAAAATGTA | 58.688 | 30.769 | 0.00 | 0.00 | 40.15 | 2.29 |
7270 | 11681 | 7.273381 | AGCGTAAAAGCATGATGAAAAATGTAC | 59.727 | 33.333 | 0.00 | 0.00 | 40.15 | 2.90 |
7271 | 11682 | 7.591407 | CGTAAAAGCATGATGAAAAATGTACG | 58.409 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
7272 | 11683 | 7.270365 | CGTAAAAGCATGATGAAAAATGTACGT | 59.730 | 33.333 | 0.00 | 0.00 | 0.00 | 3.57 |
7273 | 11684 | 9.549509 | GTAAAAGCATGATGAAAAATGTACGTA | 57.450 | 29.630 | 0.00 | 0.00 | 0.00 | 3.57 |
7275 | 11686 | 8.841444 | AAAGCATGATGAAAAATGTACGTATC | 57.159 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
7276 | 11687 | 7.552458 | AGCATGATGAAAAATGTACGTATCA | 57.448 | 32.000 | 0.00 | 0.00 | 0.00 | 2.15 |
7277 | 11688 | 7.409697 | AGCATGATGAAAAATGTACGTATCAC | 58.590 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
7278 | 11689 | 6.632834 | GCATGATGAAAAATGTACGTATCACC | 59.367 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
7279 | 11690 | 6.339194 | TGATGAAAAATGTACGTATCACCG | 57.661 | 37.500 | 0.00 | 0.00 | 0.00 | 4.94 |
7280 | 11691 | 5.870433 | TGATGAAAAATGTACGTATCACCGT | 59.130 | 36.000 | 0.00 | 0.00 | 44.50 | 4.83 |
7281 | 11692 | 7.034397 | TGATGAAAAATGTACGTATCACCGTA | 58.966 | 34.615 | 0.00 | 0.00 | 42.00 | 4.02 |
7288 | 11699 | 1.549203 | ACGTATCACCGTACAACCCT | 58.451 | 50.000 | 0.00 | 0.00 | 39.73 | 4.34 |
7289 | 11700 | 1.474077 | ACGTATCACCGTACAACCCTC | 59.526 | 52.381 | 0.00 | 0.00 | 39.73 | 4.30 |
7290 | 11701 | 1.202336 | CGTATCACCGTACAACCCTCC | 60.202 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
7291 | 11702 | 1.826720 | GTATCACCGTACAACCCTCCA | 59.173 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
7292 | 11703 | 1.354101 | ATCACCGTACAACCCTCCAA | 58.646 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
7293 | 11704 | 0.682852 | TCACCGTACAACCCTCCAAG | 59.317 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
7294 | 11705 | 0.953960 | CACCGTACAACCCTCCAAGC | 60.954 | 60.000 | 0.00 | 0.00 | 0.00 | 4.01 |
7295 | 11706 | 1.373435 | CCGTACAACCCTCCAAGCA | 59.627 | 57.895 | 0.00 | 0.00 | 0.00 | 3.91 |
7296 | 11707 | 0.250553 | CCGTACAACCCTCCAAGCAA | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
7297 | 11708 | 1.600023 | CGTACAACCCTCCAAGCAAA | 58.400 | 50.000 | 0.00 | 0.00 | 0.00 | 3.68 |
7298 | 11709 | 1.265905 | CGTACAACCCTCCAAGCAAAC | 59.734 | 52.381 | 0.00 | 0.00 | 0.00 | 2.93 |
7299 | 11710 | 1.265905 | GTACAACCCTCCAAGCAAACG | 59.734 | 52.381 | 0.00 | 0.00 | 0.00 | 3.60 |
7300 | 11711 | 0.106918 | ACAACCCTCCAAGCAAACGA | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
7301 | 11712 | 1.028905 | CAACCCTCCAAGCAAACGAA | 58.971 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
7302 | 11713 | 1.407258 | CAACCCTCCAAGCAAACGAAA | 59.593 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
7303 | 11714 | 1.770294 | ACCCTCCAAGCAAACGAAAA | 58.230 | 45.000 | 0.00 | 0.00 | 0.00 | 2.29 |
7304 | 11715 | 1.407618 | ACCCTCCAAGCAAACGAAAAC | 59.592 | 47.619 | 0.00 | 0.00 | 0.00 | 2.43 |
7305 | 11716 | 1.599419 | CCCTCCAAGCAAACGAAAACG | 60.599 | 52.381 | 0.00 | 0.00 | 0.00 | 3.60 |
7306 | 11717 | 1.332375 | CCTCCAAGCAAACGAAAACGA | 59.668 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
7307 | 11718 | 2.031157 | CCTCCAAGCAAACGAAAACGAT | 60.031 | 45.455 | 0.00 | 0.00 | 0.00 | 3.73 |
7308 | 11719 | 3.550030 | CCTCCAAGCAAACGAAAACGATT | 60.550 | 43.478 | 0.00 | 0.00 | 0.00 | 3.34 |
7309 | 11720 | 4.035278 | TCCAAGCAAACGAAAACGATTT | 57.965 | 36.364 | 0.00 | 0.00 | 0.00 | 2.17 |
7310 | 11721 | 4.039032 | TCCAAGCAAACGAAAACGATTTC | 58.961 | 39.130 | 8.01 | 8.01 | 41.27 | 2.17 |
7311 | 11722 | 3.794028 | CCAAGCAAACGAAAACGATTTCA | 59.206 | 39.130 | 16.98 | 0.00 | 44.24 | 2.69 |
7312 | 11723 | 4.317069 | CCAAGCAAACGAAAACGATTTCAC | 60.317 | 41.667 | 16.98 | 2.51 | 44.24 | 3.18 |
7313 | 11724 | 3.368495 | AGCAAACGAAAACGATTTCACC | 58.632 | 40.909 | 16.98 | 1.91 | 44.24 | 4.02 |
7314 | 11725 | 3.109619 | GCAAACGAAAACGATTTCACCA | 58.890 | 40.909 | 16.98 | 0.00 | 44.24 | 4.17 |
7315 | 11726 | 3.548268 | GCAAACGAAAACGATTTCACCAA | 59.452 | 39.130 | 16.98 | 0.00 | 44.24 | 3.67 |
7316 | 11727 | 4.317069 | GCAAACGAAAACGATTTCACCAAG | 60.317 | 41.667 | 16.98 | 4.17 | 44.24 | 3.61 |
7317 | 11728 | 4.886247 | AACGAAAACGATTTCACCAAGA | 57.114 | 36.364 | 16.98 | 0.00 | 44.24 | 3.02 |
7318 | 11729 | 4.205323 | ACGAAAACGATTTCACCAAGAC | 57.795 | 40.909 | 16.98 | 0.00 | 44.24 | 3.01 |
7319 | 11730 | 3.875134 | ACGAAAACGATTTCACCAAGACT | 59.125 | 39.130 | 16.98 | 0.00 | 44.24 | 3.24 |
7320 | 11731 | 5.051816 | ACGAAAACGATTTCACCAAGACTA | 58.948 | 37.500 | 16.98 | 0.00 | 44.24 | 2.59 |
7321 | 11732 | 5.699458 | ACGAAAACGATTTCACCAAGACTAT | 59.301 | 36.000 | 16.98 | 0.00 | 44.24 | 2.12 |
7322 | 11733 | 6.015504 | CGAAAACGATTTCACCAAGACTATG | 58.984 | 40.000 | 16.98 | 0.00 | 44.24 | 2.23 |
7323 | 11734 | 6.347402 | CGAAAACGATTTCACCAAGACTATGT | 60.347 | 38.462 | 16.98 | 0.00 | 44.24 | 2.29 |
7324 | 11735 | 6.481954 | AAACGATTTCACCAAGACTATGTC | 57.518 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
7325 | 11736 | 4.504858 | ACGATTTCACCAAGACTATGTCC | 58.495 | 43.478 | 0.00 | 0.00 | 32.18 | 4.02 |
7326 | 11737 | 4.223032 | ACGATTTCACCAAGACTATGTCCT | 59.777 | 41.667 | 0.00 | 0.00 | 32.18 | 3.85 |
7327 | 11738 | 4.806247 | CGATTTCACCAAGACTATGTCCTC | 59.194 | 45.833 | 0.00 | 0.00 | 32.18 | 3.71 |
7328 | 11739 | 5.624509 | CGATTTCACCAAGACTATGTCCTCA | 60.625 | 44.000 | 0.00 | 0.00 | 32.18 | 3.86 |
7329 | 11740 | 5.560722 | TTTCACCAAGACTATGTCCTCAA | 57.439 | 39.130 | 0.00 | 0.00 | 32.18 | 3.02 |
7330 | 11741 | 5.560722 | TTCACCAAGACTATGTCCTCAAA | 57.439 | 39.130 | 0.00 | 0.00 | 32.18 | 2.69 |
7331 | 11742 | 5.152623 | TCACCAAGACTATGTCCTCAAAG | 57.847 | 43.478 | 0.00 | 0.00 | 32.18 | 2.77 |
7332 | 11743 | 3.686726 | CACCAAGACTATGTCCTCAAAGC | 59.313 | 47.826 | 0.00 | 0.00 | 32.18 | 3.51 |
7333 | 11744 | 3.327757 | ACCAAGACTATGTCCTCAAAGCA | 59.672 | 43.478 | 0.00 | 0.00 | 32.18 | 3.91 |
7334 | 11745 | 4.202461 | ACCAAGACTATGTCCTCAAAGCAA | 60.202 | 41.667 | 0.00 | 0.00 | 32.18 | 3.91 |
7335 | 11746 | 4.394300 | CCAAGACTATGTCCTCAAAGCAAG | 59.606 | 45.833 | 0.00 | 0.00 | 32.18 | 4.01 |
7336 | 11747 | 3.604582 | AGACTATGTCCTCAAAGCAAGC | 58.395 | 45.455 | 0.00 | 0.00 | 32.18 | 4.01 |
7337 | 11748 | 2.349886 | GACTATGTCCTCAAAGCAAGCG | 59.650 | 50.000 | 0.00 | 0.00 | 0.00 | 4.68 |
7338 | 11749 | 2.028112 | ACTATGTCCTCAAAGCAAGCGA | 60.028 | 45.455 | 0.00 | 0.00 | 0.00 | 4.93 |
7339 | 11750 | 1.896220 | ATGTCCTCAAAGCAAGCGAA | 58.104 | 45.000 | 0.00 | 0.00 | 0.00 | 4.70 |
7340 | 11751 | 0.944386 | TGTCCTCAAAGCAAGCGAAC | 59.056 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
7341 | 11752 | 0.944386 | GTCCTCAAAGCAAGCGAACA | 59.056 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
7342 | 11753 | 1.537202 | GTCCTCAAAGCAAGCGAACAT | 59.463 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
7343 | 11754 | 2.742053 | GTCCTCAAAGCAAGCGAACATA | 59.258 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
7344 | 11755 | 3.002791 | TCCTCAAAGCAAGCGAACATAG | 58.997 | 45.455 | 0.00 | 0.00 | 0.00 | 2.23 |
7345 | 11756 | 2.744202 | CCTCAAAGCAAGCGAACATAGT | 59.256 | 45.455 | 0.00 | 0.00 | 0.00 | 2.12 |
7346 | 11757 | 3.189287 | CCTCAAAGCAAGCGAACATAGTT | 59.811 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
7347 | 11758 | 4.320494 | CCTCAAAGCAAGCGAACATAGTTT | 60.320 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
7348 | 11759 | 5.181690 | TCAAAGCAAGCGAACATAGTTTT | 57.818 | 34.783 | 0.00 | 0.00 | 0.00 | 2.43 |
7349 | 11760 | 5.212194 | TCAAAGCAAGCGAACATAGTTTTC | 58.788 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
7350 | 11761 | 4.829064 | AAGCAAGCGAACATAGTTTTCA | 57.171 | 36.364 | 0.00 | 0.00 | 0.00 | 2.69 |
7351 | 11762 | 4.147219 | AGCAAGCGAACATAGTTTTCAC | 57.853 | 40.909 | 0.00 | 0.00 | 0.00 | 3.18 |
7352 | 11763 | 3.058224 | AGCAAGCGAACATAGTTTTCACC | 60.058 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
7353 | 11764 | 3.821841 | CAAGCGAACATAGTTTTCACCC | 58.178 | 45.455 | 0.00 | 0.00 | 0.00 | 4.61 |
7354 | 11765 | 3.134574 | AGCGAACATAGTTTTCACCCA | 57.865 | 42.857 | 0.00 | 0.00 | 0.00 | 4.51 |
7355 | 11766 | 3.074412 | AGCGAACATAGTTTTCACCCAG | 58.926 | 45.455 | 0.00 | 0.00 | 0.00 | 4.45 |
7356 | 11767 | 3.071479 | GCGAACATAGTTTTCACCCAGA | 58.929 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
7357 | 11768 | 3.120304 | GCGAACATAGTTTTCACCCAGAC | 60.120 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
7358 | 11769 | 3.435671 | CGAACATAGTTTTCACCCAGACC | 59.564 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
7359 | 11770 | 3.053831 | ACATAGTTTTCACCCAGACCG | 57.946 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
7360 | 11771 | 2.370849 | ACATAGTTTTCACCCAGACCGT | 59.629 | 45.455 | 0.00 | 0.00 | 0.00 | 4.83 |
7361 | 11772 | 2.825861 | TAGTTTTCACCCAGACCGTC | 57.174 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
7362 | 11773 | 1.129058 | AGTTTTCACCCAGACCGTCT | 58.871 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
7363 | 11774 | 2.322658 | AGTTTTCACCCAGACCGTCTA | 58.677 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
7364 | 11775 | 2.036862 | AGTTTTCACCCAGACCGTCTAC | 59.963 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
7365 | 11776 | 0.971386 | TTTCACCCAGACCGTCTACC | 59.029 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
7366 | 11777 | 0.113776 | TTCACCCAGACCGTCTACCT | 59.886 | 55.000 | 0.00 | 0.00 | 0.00 | 3.08 |
7367 | 11778 | 0.611062 | TCACCCAGACCGTCTACCTG | 60.611 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
7368 | 11779 | 0.611062 | CACCCAGACCGTCTACCTGA | 60.611 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
7369 | 11780 | 0.335361 | ACCCAGACCGTCTACCTGAT | 59.665 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
7370 | 11781 | 1.273098 | ACCCAGACCGTCTACCTGATT | 60.273 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
7371 | 11782 | 1.409427 | CCCAGACCGTCTACCTGATTC | 59.591 | 57.143 | 0.00 | 0.00 | 0.00 | 2.52 |
7372 | 11783 | 1.409427 | CCAGACCGTCTACCTGATTCC | 59.591 | 57.143 | 0.00 | 0.00 | 0.00 | 3.01 |
7373 | 11784 | 1.409427 | CAGACCGTCTACCTGATTCCC | 59.591 | 57.143 | 0.00 | 0.00 | 0.00 | 3.97 |
7374 | 11785 | 1.288335 | AGACCGTCTACCTGATTCCCT | 59.712 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
7375 | 11786 | 2.512896 | AGACCGTCTACCTGATTCCCTA | 59.487 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
7376 | 11787 | 2.622470 | GACCGTCTACCTGATTCCCTAC | 59.378 | 54.545 | 0.00 | 0.00 | 0.00 | 3.18 |
7377 | 11788 | 2.024655 | ACCGTCTACCTGATTCCCTACA | 60.025 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
7378 | 11789 | 2.361438 | CCGTCTACCTGATTCCCTACAC | 59.639 | 54.545 | 0.00 | 0.00 | 0.00 | 2.90 |
7379 | 11790 | 3.021695 | CGTCTACCTGATTCCCTACACA | 58.978 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
7380 | 11791 | 3.181489 | CGTCTACCTGATTCCCTACACAC | 60.181 | 52.174 | 0.00 | 0.00 | 0.00 | 3.82 |
7381 | 11792 | 3.767673 | GTCTACCTGATTCCCTACACACA | 59.232 | 47.826 | 0.00 | 0.00 | 0.00 | 3.72 |
7382 | 11793 | 3.767673 | TCTACCTGATTCCCTACACACAC | 59.232 | 47.826 | 0.00 | 0.00 | 0.00 | 3.82 |
7383 | 11794 | 2.334977 | ACCTGATTCCCTACACACACA | 58.665 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
7384 | 11795 | 2.038557 | ACCTGATTCCCTACACACACAC | 59.961 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
7385 | 11796 | 2.038426 | CCTGATTCCCTACACACACACA | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
7386 | 11797 | 3.067106 | CTGATTCCCTACACACACACAC | 58.933 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
7387 | 11798 | 2.436173 | TGATTCCCTACACACACACACA | 59.564 | 45.455 | 0.00 | 0.00 | 0.00 | 3.72 |
7388 | 11799 | 2.319136 | TTCCCTACACACACACACAC | 57.681 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
7389 | 11800 | 1.196012 | TCCCTACACACACACACACA | 58.804 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
7390 | 11801 | 1.134640 | TCCCTACACACACACACACAC | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 3.82 |
7391 | 11802 | 1.406205 | CCCTACACACACACACACACA | 60.406 | 52.381 | 0.00 | 0.00 | 0.00 | 3.72 |
7392 | 11803 | 1.933181 | CCTACACACACACACACACAG | 59.067 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
7393 | 11804 | 2.418060 | CCTACACACACACACACACAGA | 60.418 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
7394 | 11805 | 1.725641 | ACACACACACACACACAGAG | 58.274 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
7395 | 11806 | 1.275010 | ACACACACACACACACAGAGA | 59.725 | 47.619 | 0.00 | 0.00 | 0.00 | 3.10 |
7396 | 11807 | 1.929169 | CACACACACACACACAGAGAG | 59.071 | 52.381 | 0.00 | 0.00 | 0.00 | 3.20 |
7397 | 11808 | 1.824852 | ACACACACACACACAGAGAGA | 59.175 | 47.619 | 0.00 | 0.00 | 0.00 | 3.10 |
7398 | 11809 | 2.159184 | ACACACACACACACAGAGAGAG | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
7399 | 11810 | 2.099756 | CACACACACACACAGAGAGAGA | 59.900 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
7400 | 11811 | 2.360483 | ACACACACACACAGAGAGAGAG | 59.640 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
7401 | 11812 | 2.620585 | CACACACACACAGAGAGAGAGA | 59.379 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
7402 | 11813 | 2.884012 | ACACACACACAGAGAGAGAGAG | 59.116 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
7403 | 11814 | 3.145286 | CACACACACAGAGAGAGAGAGA | 58.855 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
7404 | 11815 | 3.189080 | CACACACACAGAGAGAGAGAGAG | 59.811 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
7405 | 11816 | 3.072330 | ACACACACAGAGAGAGAGAGAGA | 59.928 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
7406 | 11817 | 3.686241 | CACACACAGAGAGAGAGAGAGAG | 59.314 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
7407 | 11818 | 3.582647 | ACACACAGAGAGAGAGAGAGAGA | 59.417 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
7408 | 11819 | 4.186926 | CACACAGAGAGAGAGAGAGAGAG | 58.813 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
7409 | 11820 | 3.198635 | ACACAGAGAGAGAGAGAGAGAGG | 59.801 | 52.174 | 0.00 | 0.00 | 0.00 | 3.69 |
7410 | 11821 | 3.198635 | CACAGAGAGAGAGAGAGAGAGGT | 59.801 | 52.174 | 0.00 | 0.00 | 0.00 | 3.85 |
7411 | 11822 | 4.405680 | CACAGAGAGAGAGAGAGAGAGGTA | 59.594 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
7412 | 11823 | 5.070981 | CACAGAGAGAGAGAGAGAGAGGTAT | 59.929 | 48.000 | 0.00 | 0.00 | 0.00 | 2.73 |
7413 | 11824 | 5.305644 | ACAGAGAGAGAGAGAGAGAGGTATC | 59.694 | 48.000 | 0.00 | 0.00 | 0.00 | 2.24 |
7414 | 11825 | 5.305386 | CAGAGAGAGAGAGAGAGAGGTATCA | 59.695 | 48.000 | 0.00 | 0.00 | 0.00 | 2.15 |
7415 | 11826 | 5.905331 | AGAGAGAGAGAGAGAGAGGTATCAA | 59.095 | 44.000 | 0.00 | 0.00 | 0.00 | 2.57 |
7416 | 11827 | 6.560304 | AGAGAGAGAGAGAGAGAGGTATCAAT | 59.440 | 42.308 | 0.00 | 0.00 | 0.00 | 2.57 |
7417 | 11828 | 6.773638 | AGAGAGAGAGAGAGAGGTATCAATC | 58.226 | 44.000 | 0.00 | 0.00 | 0.00 | 2.67 |
7418 | 11829 | 6.560304 | AGAGAGAGAGAGAGAGGTATCAATCT | 59.440 | 42.308 | 0.00 | 0.00 | 0.00 | 2.40 |
7419 | 11830 | 7.734865 | AGAGAGAGAGAGAGAGGTATCAATCTA | 59.265 | 40.741 | 0.00 | 0.00 | 0.00 | 1.98 |
7420 | 11831 | 7.911651 | AGAGAGAGAGAGAGGTATCAATCTAG | 58.088 | 42.308 | 0.00 | 0.00 | 0.00 | 2.43 |
7421 | 11832 | 7.734865 | AGAGAGAGAGAGAGGTATCAATCTAGA | 59.265 | 40.741 | 0.00 | 0.00 | 0.00 | 2.43 |
7422 | 11833 | 8.454859 | AGAGAGAGAGAGGTATCAATCTAGAT | 57.545 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
7423 | 11834 | 9.560860 | AGAGAGAGAGAGGTATCAATCTAGATA | 57.439 | 37.037 | 5.46 | 0.00 | 0.00 | 1.98 |
7427 | 11838 | 9.905713 | AGAGAGAGGTATCAATCTAGATATCAC | 57.094 | 37.037 | 5.46 | 2.28 | 34.69 | 3.06 |
7428 | 11839 | 9.679661 | GAGAGAGGTATCAATCTAGATATCACA | 57.320 | 37.037 | 5.46 | 0.00 | 34.69 | 3.58 |
7431 | 11842 | 9.030452 | AGAGGTATCAATCTAGATATCACAACC | 57.970 | 37.037 | 5.46 | 9.24 | 34.69 | 3.77 |
7432 | 11843 | 8.964533 | AGGTATCAATCTAGATATCACAACCT | 57.035 | 34.615 | 5.46 | 11.20 | 34.69 | 3.50 |
7433 | 11844 | 9.386122 | AGGTATCAATCTAGATATCACAACCTT | 57.614 | 33.333 | 5.46 | 0.00 | 34.69 | 3.50 |
7441 | 11852 | 3.133003 | AGATATCACAACCTTGGAGACGG | 59.867 | 47.826 | 5.32 | 0.00 | 0.00 | 4.79 |
7453 | 11864 | 0.179000 | GGAGACGGTTGATGCCTGAT | 59.821 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
7469 | 11880 | 3.753519 | GCCTGATGAGGAGTAGAGGATGA | 60.754 | 52.174 | 0.77 | 0.00 | 42.93 | 2.92 |
7470 | 11881 | 4.478203 | CCTGATGAGGAGTAGAGGATGAA | 58.522 | 47.826 | 0.00 | 0.00 | 42.93 | 2.57 |
7559 | 11970 | 4.379339 | CTAGTGAGGAGTAGAGTTTGGC | 57.621 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
7586 | 11997 | 1.680522 | GATGAGGCGCTTGAGGAGGA | 61.681 | 60.000 | 7.64 | 0.00 | 0.00 | 3.71 |
7630 | 12041 | 2.174854 | TGATAGGGGAGACGATCAGTGA | 59.825 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
7652 | 12063 | 1.422531 | GGTGAGGAGCAGAGGATGAT | 58.577 | 55.000 | 0.00 | 0.00 | 0.00 | 2.45 |
7685 | 12096 | 1.190833 | CCTATGGATGCCTCCGAGCT | 61.191 | 60.000 | 3.39 | 0.00 | 45.37 | 4.09 |
7686 | 12097 | 1.550327 | CTATGGATGCCTCCGAGCTA | 58.450 | 55.000 | 3.39 | 0.00 | 45.37 | 3.32 |
7691 | 12102 | 0.965439 | GATGCCTCCGAGCTATCTGT | 59.035 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
7720 | 12131 | 1.300233 | GACGACATCCCGATCCTGC | 60.300 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
7736 | 12147 | 3.472652 | TCCTGCGTCAAAATAAGTGTGT | 58.527 | 40.909 | 0.00 | 0.00 | 0.00 | 3.72 |
7747 | 12158 | 4.431416 | AATAAGTGTGTTGAGGTGGTCA | 57.569 | 40.909 | 0.00 | 0.00 | 0.00 | 4.02 |
7763 | 12174 | 1.227823 | TCACGGCTGTGGACAAAGG | 60.228 | 57.895 | 25.15 | 0.00 | 46.42 | 3.11 |
7772 | 12183 | 1.202830 | TGTGGACAAAGGCAACCGTAT | 60.203 | 47.619 | 0.00 | 0.00 | 37.17 | 3.06 |
7784 | 12195 | 0.037590 | AACCGTATTTCCAGCTGCCA | 59.962 | 50.000 | 8.66 | 0.00 | 0.00 | 4.92 |
7786 | 12197 | 1.097547 | CCGTATTTCCAGCTGCCAGG | 61.098 | 60.000 | 8.66 | 0.00 | 0.00 | 4.45 |
7816 | 12227 | 1.881973 | CAGTGTCATTGTCCCAACTGG | 59.118 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
7845 | 12256 | 4.569162 | CGACAACTCCAGACAAAAACACTA | 59.431 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
7859 | 12270 | 4.853924 | AAACACTACCATGAAGGCAAAG | 57.146 | 40.909 | 0.00 | 0.00 | 43.14 | 2.77 |
7862 | 12273 | 2.756760 | CACTACCATGAAGGCAAAGCAT | 59.243 | 45.455 | 0.00 | 0.00 | 43.14 | 3.79 |
7869 | 12280 | 1.271652 | TGAAGGCAAAGCATCCGGTTA | 60.272 | 47.619 | 0.00 | 0.00 | 31.08 | 2.85 |
7877 | 12288 | 4.620567 | GCAAAGCATCCGGTTAAAGGAAAT | 60.621 | 41.667 | 0.00 | 0.00 | 41.69 | 2.17 |
7878 | 12289 | 4.718940 | AAGCATCCGGTTAAAGGAAATG | 57.281 | 40.909 | 0.00 | 0.00 | 41.69 | 2.32 |
7898 | 12309 | 1.672737 | GCTACCATGGCAGCCAAAAAC | 60.673 | 52.381 | 24.49 | 2.28 | 36.95 | 2.43 |
7907 | 12318 | 1.470890 | GCAGCCAAAAACGCTACCATA | 59.529 | 47.619 | 0.00 | 0.00 | 33.91 | 2.74 |
7908 | 12319 | 2.731027 | GCAGCCAAAAACGCTACCATAC | 60.731 | 50.000 | 0.00 | 0.00 | 33.91 | 2.39 |
7919 | 12330 | 2.755650 | GCTACCATACCAACCTCATCG | 58.244 | 52.381 | 0.00 | 0.00 | 0.00 | 3.84 |
7920 | 12331 | 2.364324 | GCTACCATACCAACCTCATCGA | 59.636 | 50.000 | 0.00 | 0.00 | 0.00 | 3.59 |
7922 | 12333 | 1.485066 | ACCATACCAACCTCATCGACC | 59.515 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
7923 | 12334 | 1.484653 | CCATACCAACCTCATCGACCA | 59.515 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
7937 | 12348 | 1.488812 | TCGACCATAGGGACCAATTGG | 59.511 | 52.381 | 23.31 | 23.31 | 38.36 | 3.16 |
7938 | 12349 | 1.476833 | CGACCATAGGGACCAATTGGG | 60.477 | 57.143 | 27.89 | 10.20 | 39.43 | 4.12 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 3.245052 | GCCCATCTTTGGCTATATGGAGT | 60.245 | 47.826 | 10.85 | 0.00 | 45.70 | 3.85 |
1 | 2 | 3.350833 | GCCCATCTTTGGCTATATGGAG | 58.649 | 50.000 | 10.85 | 4.65 | 45.70 | 3.86 |
2 | 3 | 3.439857 | GCCCATCTTTGGCTATATGGA | 57.560 | 47.619 | 10.85 | 0.00 | 45.70 | 3.41 |
11 | 12 | 1.688772 | CCTCTGATGCCCATCTTTGG | 58.311 | 55.000 | 9.44 | 5.16 | 43.23 | 3.28 |
12 | 13 | 1.688772 | CCCTCTGATGCCCATCTTTG | 58.311 | 55.000 | 9.44 | 1.36 | 38.60 | 2.77 |
13 | 14 | 0.106318 | GCCCTCTGATGCCCATCTTT | 60.106 | 55.000 | 9.44 | 0.00 | 38.60 | 2.52 |
14 | 15 | 0.992431 | AGCCCTCTGATGCCCATCTT | 60.992 | 55.000 | 9.44 | 0.00 | 38.60 | 2.40 |
15 | 16 | 1.385631 | AGCCCTCTGATGCCCATCT | 60.386 | 57.895 | 9.44 | 0.00 | 38.60 | 2.90 |
16 | 17 | 1.228184 | CAGCCCTCTGATGCCCATC | 60.228 | 63.158 | 1.35 | 1.35 | 42.95 | 3.51 |
17 | 18 | 2.924640 | CAGCCCTCTGATGCCCAT | 59.075 | 61.111 | 0.00 | 0.00 | 42.95 | 4.00 |
18 | 19 | 4.119363 | GCAGCCCTCTGATGCCCA | 62.119 | 66.667 | 0.00 | 0.00 | 42.95 | 5.36 |
21 | 22 | 2.516460 | CTGGCAGCCCTCTGATGC | 60.516 | 66.667 | 9.64 | 0.00 | 42.95 | 3.91 |
22 | 23 | 2.192443 | CCTGGCAGCCCTCTGATG | 59.808 | 66.667 | 9.64 | 0.00 | 42.95 | 3.07 |
23 | 24 | 3.095163 | CCCTGGCAGCCCTCTGAT | 61.095 | 66.667 | 9.64 | 0.00 | 42.95 | 2.90 |
110 | 111 | 2.433436 | CGAAAGAAGTACCAAAGGGGG | 58.567 | 52.381 | 0.00 | 0.00 | 42.91 | 5.40 |
111 | 112 | 1.810755 | GCGAAAGAAGTACCAAAGGGG | 59.189 | 52.381 | 0.00 | 0.00 | 44.81 | 4.79 |
112 | 113 | 1.810755 | GGCGAAAGAAGTACCAAAGGG | 59.189 | 52.381 | 0.00 | 0.00 | 41.29 | 3.95 |
113 | 114 | 1.810755 | GGGCGAAAGAAGTACCAAAGG | 59.189 | 52.381 | 0.00 | 0.00 | 0.00 | 3.11 |
114 | 115 | 2.500229 | TGGGCGAAAGAAGTACCAAAG | 58.500 | 47.619 | 0.00 | 0.00 | 0.00 | 2.77 |
115 | 116 | 2.642154 | TGGGCGAAAGAAGTACCAAA | 57.358 | 45.000 | 0.00 | 0.00 | 0.00 | 3.28 |
116 | 117 | 2.642154 | TTGGGCGAAAGAAGTACCAA | 57.358 | 45.000 | 0.00 | 0.00 | 35.78 | 3.67 |
117 | 118 | 2.871096 | ATTGGGCGAAAGAAGTACCA | 57.129 | 45.000 | 0.00 | 0.00 | 0.00 | 3.25 |
118 | 119 | 5.830000 | AAATATTGGGCGAAAGAAGTACC | 57.170 | 39.130 | 0.00 | 0.00 | 0.00 | 3.34 |
140 | 141 | 8.783093 | CGGGAGCACATTTCAGAATATATAAAA | 58.217 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
141 | 142 | 7.936847 | ACGGGAGCACATTTCAGAATATATAAA | 59.063 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
142 | 143 | 7.387673 | CACGGGAGCACATTTCAGAATATATAA | 59.612 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
143 | 144 | 6.873605 | CACGGGAGCACATTTCAGAATATATA | 59.126 | 38.462 | 0.00 | 0.00 | 0.00 | 0.86 |
144 | 145 | 5.702670 | CACGGGAGCACATTTCAGAATATAT | 59.297 | 40.000 | 0.00 | 0.00 | 0.00 | 0.86 |
145 | 146 | 5.056480 | CACGGGAGCACATTTCAGAATATA | 58.944 | 41.667 | 0.00 | 0.00 | 0.00 | 0.86 |
146 | 147 | 3.879295 | CACGGGAGCACATTTCAGAATAT | 59.121 | 43.478 | 0.00 | 0.00 | 0.00 | 1.28 |
147 | 148 | 3.055458 | TCACGGGAGCACATTTCAGAATA | 60.055 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
148 | 149 | 2.086869 | CACGGGAGCACATTTCAGAAT | 58.913 | 47.619 | 0.00 | 0.00 | 0.00 | 2.40 |
149 | 150 | 1.071542 | TCACGGGAGCACATTTCAGAA | 59.928 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
150 | 151 | 0.684535 | TCACGGGAGCACATTTCAGA | 59.315 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
151 | 152 | 1.466167 | CTTCACGGGAGCACATTTCAG | 59.534 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
152 | 153 | 1.202758 | ACTTCACGGGAGCACATTTCA | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
153 | 154 | 1.523758 | ACTTCACGGGAGCACATTTC | 58.476 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
154 | 155 | 1.981256 | AACTTCACGGGAGCACATTT | 58.019 | 45.000 | 0.00 | 0.00 | 0.00 | 2.32 |
155 | 156 | 1.880027 | GAAACTTCACGGGAGCACATT | 59.120 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
156 | 157 | 1.202758 | TGAAACTTCACGGGAGCACAT | 60.203 | 47.619 | 0.00 | 0.00 | 31.01 | 3.21 |
157 | 158 | 0.179234 | TGAAACTTCACGGGAGCACA | 59.821 | 50.000 | 0.00 | 0.00 | 31.01 | 4.57 |
158 | 159 | 1.264288 | CTTGAAACTTCACGGGAGCAC | 59.736 | 52.381 | 0.00 | 0.00 | 36.83 | 4.40 |
159 | 160 | 1.593196 | CTTGAAACTTCACGGGAGCA | 58.407 | 50.000 | 0.00 | 0.00 | 36.83 | 4.26 |
160 | 161 | 0.875059 | CCTTGAAACTTCACGGGAGC | 59.125 | 55.000 | 7.01 | 0.00 | 41.46 | 4.70 |
161 | 162 | 0.875059 | GCCTTGAAACTTCACGGGAG | 59.125 | 55.000 | 14.73 | 0.70 | 44.30 | 4.30 |
162 | 163 | 0.472471 | AGCCTTGAAACTTCACGGGA | 59.528 | 50.000 | 14.73 | 0.00 | 44.30 | 5.14 |
163 | 164 | 1.318576 | AAGCCTTGAAACTTCACGGG | 58.681 | 50.000 | 14.73 | 10.36 | 44.30 | 5.28 |
164 | 165 | 3.115554 | CAAAAGCCTTGAAACTTCACGG | 58.884 | 45.455 | 9.95 | 9.95 | 46.20 | 4.94 |
165 | 166 | 3.115554 | CCAAAAGCCTTGAAACTTCACG | 58.884 | 45.455 | 0.00 | 0.00 | 36.83 | 4.35 |
166 | 167 | 4.097892 | TCTCCAAAAGCCTTGAAACTTCAC | 59.902 | 41.667 | 0.00 | 0.00 | 36.83 | 3.18 |
167 | 168 | 4.277476 | TCTCCAAAAGCCTTGAAACTTCA | 58.723 | 39.130 | 0.00 | 0.00 | 34.92 | 3.02 |
168 | 169 | 4.918810 | TCTCCAAAAGCCTTGAAACTTC | 57.081 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
169 | 170 | 4.651045 | ACATCTCCAAAAGCCTTGAAACTT | 59.349 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
170 | 171 | 4.038402 | CACATCTCCAAAAGCCTTGAAACT | 59.962 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
171 | 172 | 4.301628 | CACATCTCCAAAAGCCTTGAAAC | 58.698 | 43.478 | 0.00 | 0.00 | 0.00 | 2.78 |
172 | 173 | 3.243839 | GCACATCTCCAAAAGCCTTGAAA | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
173 | 174 | 2.297033 | GCACATCTCCAAAAGCCTTGAA | 59.703 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
174 | 175 | 1.888512 | GCACATCTCCAAAAGCCTTGA | 59.111 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
175 | 176 | 1.614903 | TGCACATCTCCAAAAGCCTTG | 59.385 | 47.619 | 0.00 | 0.00 | 0.00 | 3.61 |
176 | 177 | 1.891150 | CTGCACATCTCCAAAAGCCTT | 59.109 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
177 | 178 | 1.074405 | TCTGCACATCTCCAAAAGCCT | 59.926 | 47.619 | 0.00 | 0.00 | 0.00 | 4.58 |
178 | 179 | 1.538047 | TCTGCACATCTCCAAAAGCC | 58.462 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
179 | 180 | 3.863142 | ATTCTGCACATCTCCAAAAGC | 57.137 | 42.857 | 0.00 | 0.00 | 0.00 | 3.51 |
180 | 181 | 4.946157 | ACCTATTCTGCACATCTCCAAAAG | 59.054 | 41.667 | 0.00 | 0.00 | 0.00 | 2.27 |
181 | 182 | 4.922206 | ACCTATTCTGCACATCTCCAAAA | 58.078 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
182 | 183 | 4.225942 | AGACCTATTCTGCACATCTCCAAA | 59.774 | 41.667 | 0.00 | 0.00 | 31.12 | 3.28 |
183 | 184 | 3.776969 | AGACCTATTCTGCACATCTCCAA | 59.223 | 43.478 | 0.00 | 0.00 | 31.12 | 3.53 |
184 | 185 | 3.378512 | AGACCTATTCTGCACATCTCCA | 58.621 | 45.455 | 0.00 | 0.00 | 31.12 | 3.86 |
185 | 186 | 3.640967 | AGAGACCTATTCTGCACATCTCC | 59.359 | 47.826 | 0.00 | 0.00 | 33.22 | 3.71 |
186 | 187 | 4.935352 | AGAGACCTATTCTGCACATCTC | 57.065 | 45.455 | 0.00 | 0.00 | 33.22 | 2.75 |
187 | 188 | 6.992664 | ATTAGAGACCTATTCTGCACATCT | 57.007 | 37.500 | 0.00 | 0.00 | 33.22 | 2.90 |
188 | 189 | 9.717942 | AAATATTAGAGACCTATTCTGCACATC | 57.282 | 33.333 | 0.00 | 0.00 | 33.22 | 3.06 |
189 | 190 | 9.499479 | CAAATATTAGAGACCTATTCTGCACAT | 57.501 | 33.333 | 0.00 | 0.00 | 33.22 | 3.21 |
190 | 191 | 7.442364 | GCAAATATTAGAGACCTATTCTGCACA | 59.558 | 37.037 | 0.00 | 0.00 | 33.22 | 4.57 |
191 | 192 | 7.659390 | AGCAAATATTAGAGACCTATTCTGCAC | 59.341 | 37.037 | 0.00 | 0.00 | 33.22 | 4.57 |
192 | 193 | 7.739825 | AGCAAATATTAGAGACCTATTCTGCA | 58.260 | 34.615 | 0.00 | 0.00 | 33.22 | 4.41 |
193 | 194 | 7.333174 | GGAGCAAATATTAGAGACCTATTCTGC | 59.667 | 40.741 | 0.00 | 0.00 | 33.22 | 4.26 |
194 | 195 | 8.592809 | AGGAGCAAATATTAGAGACCTATTCTG | 58.407 | 37.037 | 0.00 | 0.00 | 33.22 | 3.02 |
195 | 196 | 8.734593 | AGGAGCAAATATTAGAGACCTATTCT | 57.265 | 34.615 | 0.00 | 0.00 | 37.23 | 2.40 |
196 | 197 | 9.785982 | AAAGGAGCAAATATTAGAGACCTATTC | 57.214 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
198 | 199 | 9.785982 | GAAAAGGAGCAAATATTAGAGACCTAT | 57.214 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
199 | 200 | 8.211629 | GGAAAAGGAGCAAATATTAGAGACCTA | 58.788 | 37.037 | 0.00 | 0.00 | 0.00 | 3.08 |
200 | 201 | 7.057264 | GGAAAAGGAGCAAATATTAGAGACCT | 58.943 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
201 | 202 | 6.828785 | TGGAAAAGGAGCAAATATTAGAGACC | 59.171 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
202 | 203 | 7.467947 | GCTGGAAAAGGAGCAAATATTAGAGAC | 60.468 | 40.741 | 0.00 | 0.00 | 35.15 | 3.36 |
203 | 204 | 6.543831 | GCTGGAAAAGGAGCAAATATTAGAGA | 59.456 | 38.462 | 0.00 | 0.00 | 35.15 | 3.10 |
204 | 205 | 6.238869 | GGCTGGAAAAGGAGCAAATATTAGAG | 60.239 | 42.308 | 0.00 | 0.00 | 36.90 | 2.43 |
205 | 206 | 5.594317 | GGCTGGAAAAGGAGCAAATATTAGA | 59.406 | 40.000 | 0.00 | 0.00 | 36.90 | 2.10 |
206 | 207 | 5.221322 | GGGCTGGAAAAGGAGCAAATATTAG | 60.221 | 44.000 | 0.00 | 0.00 | 36.90 | 1.73 |
207 | 208 | 4.649218 | GGGCTGGAAAAGGAGCAAATATTA | 59.351 | 41.667 | 0.00 | 0.00 | 36.90 | 0.98 |
208 | 209 | 3.452264 | GGGCTGGAAAAGGAGCAAATATT | 59.548 | 43.478 | 0.00 | 0.00 | 36.90 | 1.28 |
209 | 210 | 3.033909 | GGGCTGGAAAAGGAGCAAATAT | 58.966 | 45.455 | 0.00 | 0.00 | 36.90 | 1.28 |
210 | 211 | 2.225242 | TGGGCTGGAAAAGGAGCAAATA | 60.225 | 45.455 | 0.00 | 0.00 | 36.90 | 1.40 |
211 | 212 | 1.269958 | GGGCTGGAAAAGGAGCAAAT | 58.730 | 50.000 | 0.00 | 0.00 | 36.90 | 2.32 |
212 | 213 | 0.105760 | TGGGCTGGAAAAGGAGCAAA | 60.106 | 50.000 | 0.00 | 0.00 | 36.90 | 3.68 |
213 | 214 | 0.540365 | CTGGGCTGGAAAAGGAGCAA | 60.540 | 55.000 | 0.00 | 0.00 | 36.90 | 3.91 |
214 | 215 | 1.075482 | CTGGGCTGGAAAAGGAGCA | 59.925 | 57.895 | 0.00 | 0.00 | 36.90 | 4.26 |
215 | 216 | 0.251341 | TTCTGGGCTGGAAAAGGAGC | 60.251 | 55.000 | 0.00 | 0.00 | 34.23 | 4.70 |
216 | 217 | 2.521547 | ATTCTGGGCTGGAAAAGGAG | 57.478 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
217 | 218 | 2.557452 | GGAATTCTGGGCTGGAAAAGGA | 60.557 | 50.000 | 5.23 | 0.00 | 0.00 | 3.36 |
218 | 219 | 1.827344 | GGAATTCTGGGCTGGAAAAGG | 59.173 | 52.381 | 5.23 | 0.00 | 0.00 | 3.11 |
219 | 220 | 2.494870 | CTGGAATTCTGGGCTGGAAAAG | 59.505 | 50.000 | 5.23 | 0.00 | 0.00 | 2.27 |
220 | 221 | 2.528564 | CTGGAATTCTGGGCTGGAAAA | 58.471 | 47.619 | 5.23 | 0.00 | 0.00 | 2.29 |
221 | 222 | 1.892329 | GCTGGAATTCTGGGCTGGAAA | 60.892 | 52.381 | 5.23 | 0.00 | 0.00 | 3.13 |
222 | 223 | 0.323725 | GCTGGAATTCTGGGCTGGAA | 60.324 | 55.000 | 5.23 | 0.00 | 0.00 | 3.53 |
223 | 224 | 1.210204 | AGCTGGAATTCTGGGCTGGA | 61.210 | 55.000 | 15.46 | 0.00 | 31.68 | 3.86 |
224 | 225 | 1.035932 | CAGCTGGAATTCTGGGCTGG | 61.036 | 60.000 | 25.31 | 14.88 | 44.32 | 4.85 |
225 | 226 | 2.490165 | CAGCTGGAATTCTGGGCTG | 58.510 | 57.895 | 22.51 | 22.51 | 43.03 | 4.85 |
226 | 227 | 1.379576 | GCAGCTGGAATTCTGGGCT | 60.380 | 57.895 | 17.12 | 9.52 | 0.00 | 5.19 |
227 | 228 | 2.421399 | GGCAGCTGGAATTCTGGGC | 61.421 | 63.158 | 17.12 | 7.46 | 0.00 | 5.36 |
228 | 229 | 2.117156 | CGGCAGCTGGAATTCTGGG | 61.117 | 63.158 | 17.12 | 0.00 | 0.00 | 4.45 |
229 | 230 | 2.117156 | CCGGCAGCTGGAATTCTGG | 61.117 | 63.158 | 16.28 | 8.81 | 29.82 | 3.86 |
230 | 231 | 2.768492 | GCCGGCAGCTGGAATTCTG | 61.768 | 63.158 | 25.86 | 2.83 | 38.99 | 3.02 |
231 | 232 | 2.439156 | GCCGGCAGCTGGAATTCT | 60.439 | 61.111 | 25.86 | 0.00 | 38.99 | 2.40 |
232 | 233 | 1.669999 | AATGCCGGCAGCTGGAATTC | 61.670 | 55.000 | 35.36 | 6.55 | 32.94 | 2.17 |
233 | 234 | 1.669999 | GAATGCCGGCAGCTGGAATT | 61.670 | 55.000 | 35.36 | 25.18 | 40.67 | 2.17 |
234 | 235 | 2.043652 | AATGCCGGCAGCTGGAAT | 60.044 | 55.556 | 35.36 | 17.41 | 44.23 | 3.01 |
235 | 236 | 2.751436 | GAATGCCGGCAGCTGGAA | 60.751 | 61.111 | 35.36 | 15.43 | 44.23 | 3.53 |
236 | 237 | 3.687321 | GAGAATGCCGGCAGCTGGA | 62.687 | 63.158 | 35.36 | 10.32 | 44.23 | 3.86 |
237 | 238 | 3.207669 | GAGAATGCCGGCAGCTGG | 61.208 | 66.667 | 35.36 | 17.00 | 44.23 | 4.85 |
238 | 239 | 3.207669 | GGAGAATGCCGGCAGCTG | 61.208 | 66.667 | 35.36 | 10.11 | 44.23 | 4.24 |
239 | 240 | 4.496336 | GGGAGAATGCCGGCAGCT | 62.496 | 66.667 | 35.36 | 31.54 | 44.23 | 4.24 |
247 | 248 | 4.336713 | GGTTTACATGAAGAGGGAGAATGC | 59.663 | 45.833 | 0.00 | 0.00 | 0.00 | 3.56 |
248 | 249 | 5.749462 | AGGTTTACATGAAGAGGGAGAATG | 58.251 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
249 | 250 | 6.183347 | CAAGGTTTACATGAAGAGGGAGAAT | 58.817 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
250 | 251 | 5.073144 | ACAAGGTTTACATGAAGAGGGAGAA | 59.927 | 40.000 | 0.00 | 0.00 | 0.00 | 2.87 |
251 | 252 | 4.597507 | ACAAGGTTTACATGAAGAGGGAGA | 59.402 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
252 | 253 | 4.911390 | ACAAGGTTTACATGAAGAGGGAG | 58.089 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
253 | 254 | 4.993705 | ACAAGGTTTACATGAAGAGGGA | 57.006 | 40.909 | 0.00 | 0.00 | 0.00 | 4.20 |
254 | 255 | 7.519032 | TTTTACAAGGTTTACATGAAGAGGG | 57.481 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
268 | 269 | 9.528489 | TGCCTATTTTCTCTTATTTTACAAGGT | 57.472 | 29.630 | 0.00 | 0.00 | 0.00 | 3.50 |
280 | 281 | 9.905713 | TCACAATACTTATGCCTATTTTCTCTT | 57.094 | 29.630 | 0.00 | 0.00 | 0.00 | 2.85 |
301 | 302 | 9.062524 | GGGCTGTTATTACACATTATATCACAA | 57.937 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
302 | 303 | 8.214364 | TGGGCTGTTATTACACATTATATCACA | 58.786 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
303 | 304 | 8.615878 | TGGGCTGTTATTACACATTATATCAC | 57.384 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
308 | 309 | 8.522830 | GCATTATGGGCTGTTATTACACATTAT | 58.477 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
309 | 310 | 7.503902 | TGCATTATGGGCTGTTATTACACATTA | 59.496 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
310 | 311 | 6.323482 | TGCATTATGGGCTGTTATTACACATT | 59.677 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
311 | 312 | 5.832595 | TGCATTATGGGCTGTTATTACACAT | 59.167 | 36.000 | 0.00 | 0.00 | 0.00 | 3.21 |
312 | 313 | 5.196695 | TGCATTATGGGCTGTTATTACACA | 58.803 | 37.500 | 0.00 | 0.00 | 0.00 | 3.72 |
313 | 314 | 5.766150 | TGCATTATGGGCTGTTATTACAC | 57.234 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
314 | 315 | 6.975196 | ATTGCATTATGGGCTGTTATTACA | 57.025 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
315 | 316 | 7.881142 | TGTATTGCATTATGGGCTGTTATTAC | 58.119 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
316 | 317 | 8.648698 | ATGTATTGCATTATGGGCTGTTATTA | 57.351 | 30.769 | 0.00 | 0.00 | 33.14 | 0.98 |
317 | 318 | 6.975196 | TGTATTGCATTATGGGCTGTTATT | 57.025 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
318 | 319 | 8.827832 | ATATGTATTGCATTATGGGCTGTTAT | 57.172 | 30.769 | 0.00 | 0.00 | 38.94 | 1.89 |
319 | 320 | 7.065683 | CGATATGTATTGCATTATGGGCTGTTA | 59.934 | 37.037 | 0.00 | 0.00 | 38.94 | 2.41 |
320 | 321 | 6.127925 | CGATATGTATTGCATTATGGGCTGTT | 60.128 | 38.462 | 0.00 | 0.00 | 38.94 | 3.16 |
321 | 322 | 5.355071 | CGATATGTATTGCATTATGGGCTGT | 59.645 | 40.000 | 0.00 | 0.00 | 38.94 | 4.40 |
322 | 323 | 5.585844 | TCGATATGTATTGCATTATGGGCTG | 59.414 | 40.000 | 0.00 | 0.00 | 38.94 | 4.85 |
323 | 324 | 5.744171 | TCGATATGTATTGCATTATGGGCT | 58.256 | 37.500 | 0.00 | 0.00 | 38.94 | 5.19 |
324 | 325 | 6.624352 | ATCGATATGTATTGCATTATGGGC | 57.376 | 37.500 | 0.00 | 0.00 | 38.94 | 5.36 |
338 | 339 | 9.970553 | TTCCCTAGTAGTGTTATATCGATATGT | 57.029 | 33.333 | 24.99 | 6.01 | 0.00 | 2.29 |
515 | 560 | 2.347490 | CCTATTCCGGGGGCATCG | 59.653 | 66.667 | 0.00 | 0.00 | 0.00 | 3.84 |
524 | 569 | 3.181499 | CGCTACTACTATGGCCTATTCCG | 60.181 | 52.174 | 3.32 | 0.00 | 0.00 | 4.30 |
1085 | 1138 | 3.118531 | ACCCAAGCTAGGATCTGTTGAT | 58.881 | 45.455 | 9.64 | 0.00 | 35.26 | 2.57 |
1131 | 1184 | 1.283321 | GGGGCAGAGGAAGAAAGTGAT | 59.717 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
1170 | 1223 | 8.655935 | AATTAACTGATGAAACCAGAGGATTT | 57.344 | 30.769 | 0.00 | 0.00 | 35.69 | 2.17 |
1183 | 1236 | 5.123820 | GGTTGTGCTGCTAATTAACTGATGA | 59.876 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
1184 | 1237 | 5.106197 | TGGTTGTGCTGCTAATTAACTGATG | 60.106 | 40.000 | 0.00 | 0.00 | 0.00 | 3.07 |
1185 | 1238 | 5.009631 | TGGTTGTGCTGCTAATTAACTGAT | 58.990 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
1368 | 1421 | 6.927936 | TGCACAATAACATATGTTGCAAAGTT | 59.072 | 30.769 | 27.62 | 11.62 | 38.90 | 2.66 |
1380 | 1433 | 6.989759 | ACTTCACCGATATGCACAATAACATA | 59.010 | 34.615 | 0.00 | 0.00 | 33.52 | 2.29 |
1406 | 1459 | 5.246203 | ACTGACCTTGTGCAAGTAGAATCTA | 59.754 | 40.000 | 10.56 | 0.00 | 36.72 | 1.98 |
1666 | 1722 | 8.650143 | AATATTTTGTGTGTGAAATAGGGTCT | 57.350 | 30.769 | 0.00 | 0.00 | 32.89 | 3.85 |
1673 | 1729 | 8.550376 | GCAGTGAAAATATTTTGTGTGTGAAAT | 58.450 | 29.630 | 17.98 | 0.00 | 0.00 | 2.17 |
1902 | 2404 | 0.254747 | CCCCTAAGCAACCGATGGAA | 59.745 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1904 | 2406 | 0.254747 | TTCCCCTAAGCAACCGATGG | 59.745 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2034 | 2536 | 1.884926 | CTTCTCGCGCATTCCTCCC | 60.885 | 63.158 | 8.75 | 0.00 | 0.00 | 4.30 |
2483 | 2987 | 6.518200 | GCACTAGCTATGAGGAAATCTAAGCT | 60.518 | 42.308 | 0.00 | 0.00 | 44.12 | 3.74 |
2651 | 3156 | 7.172190 | ACAACAAACATTGATGTGTTTTTCACA | 59.828 | 29.630 | 5.37 | 3.21 | 46.96 | 3.58 |
2941 | 3676 | 1.228367 | ACAACCAGCAGGAAGGCAG | 60.228 | 57.895 | 0.35 | 0.00 | 38.69 | 4.85 |
3390 | 5843 | 5.594926 | CCTTCCATTGTAATCCAGAAATGC | 58.405 | 41.667 | 0.00 | 0.00 | 0.00 | 3.56 |
3813 | 7907 | 6.987386 | ACTAGATGAACTACATACATGCTCC | 58.013 | 40.000 | 0.00 | 0.00 | 39.56 | 4.70 |
4276 | 8487 | 4.836825 | CTCTGCCTCACCTTATTTCTCAA | 58.163 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
4341 | 8552 | 0.399806 | GCTCCTCTTCCTCTCCCCAT | 60.400 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4598 | 8850 | 6.147821 | CGAGACATCAAACTTTCAACTATGGT | 59.852 | 38.462 | 0.00 | 0.00 | 0.00 | 3.55 |
4940 | 9192 | 0.979709 | TAGAGGAGGCTGCAGCATGT | 60.980 | 55.000 | 37.63 | 21.80 | 44.36 | 3.21 |
5552 | 9909 | 9.347240 | CATGAATTTTGTAGACTATGGGAATCT | 57.653 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
5553 | 9910 | 8.078596 | GCATGAATTTTGTAGACTATGGGAATC | 58.921 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
6201 | 10560 | 1.594194 | CCAACGGCAAGGCATAAGCA | 61.594 | 55.000 | 0.00 | 0.00 | 44.61 | 3.91 |
6447 | 10807 | 0.764890 | AGTGGCAGCCAGAGTAACAA | 59.235 | 50.000 | 16.83 | 0.00 | 32.34 | 2.83 |
6462 | 10822 | 5.278604 | CACATGCACATGAATCAATAGTGG | 58.721 | 41.667 | 17.19 | 3.10 | 41.20 | 4.00 |
6502 | 10862 | 4.408921 | TCCACATCCAAATCTAGTAGGGTG | 59.591 | 45.833 | 0.00 | 0.00 | 38.24 | 4.61 |
6653 | 11013 | 1.536922 | GGATGATCATCTGTGCGACGT | 60.537 | 52.381 | 29.85 | 0.00 | 37.92 | 4.34 |
7083 | 11494 | 2.975536 | GTGCCACCCACGCTACTA | 59.024 | 61.111 | 0.00 | 0.00 | 34.22 | 1.82 |
7196 | 11607 | 3.431766 | CGGGTAAAATGGCTACTAGCAGT | 60.432 | 47.826 | 10.27 | 0.00 | 44.75 | 4.40 |
7246 | 11657 | 7.270365 | ACGTACATTTTTCATCATGCTTTTACG | 59.730 | 33.333 | 0.00 | 0.00 | 32.28 | 3.18 |
7251 | 11662 | 7.910162 | GTGATACGTACATTTTTCATCATGCTT | 59.090 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
7252 | 11663 | 7.409697 | GTGATACGTACATTTTTCATCATGCT | 58.590 | 34.615 | 0.00 | 0.00 | 0.00 | 3.79 |
7253 | 11664 | 6.632834 | GGTGATACGTACATTTTTCATCATGC | 59.367 | 38.462 | 0.00 | 0.00 | 0.00 | 4.06 |
7254 | 11665 | 6.845782 | CGGTGATACGTACATTTTTCATCATG | 59.154 | 38.462 | 0.00 | 0.00 | 0.00 | 3.07 |
7255 | 11666 | 6.537301 | ACGGTGATACGTACATTTTTCATCAT | 59.463 | 34.615 | 0.00 | 0.00 | 46.58 | 2.45 |
7256 | 11667 | 5.870433 | ACGGTGATACGTACATTTTTCATCA | 59.130 | 36.000 | 0.00 | 0.00 | 46.58 | 3.07 |
7257 | 11668 | 6.340537 | ACGGTGATACGTACATTTTTCATC | 57.659 | 37.500 | 0.00 | 0.00 | 46.58 | 2.92 |
7268 | 11679 | 2.682856 | GAGGGTTGTACGGTGATACGTA | 59.317 | 50.000 | 0.00 | 0.00 | 46.58 | 3.57 |
7270 | 11681 | 1.202336 | GGAGGGTTGTACGGTGATACG | 60.202 | 57.143 | 0.00 | 0.00 | 40.31 | 3.06 |
7271 | 11682 | 1.826720 | TGGAGGGTTGTACGGTGATAC | 59.173 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
7272 | 11683 | 2.234896 | TGGAGGGTTGTACGGTGATA | 57.765 | 50.000 | 0.00 | 0.00 | 0.00 | 2.15 |
7273 | 11684 | 1.278127 | CTTGGAGGGTTGTACGGTGAT | 59.722 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
7274 | 11685 | 0.682852 | CTTGGAGGGTTGTACGGTGA | 59.317 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
7275 | 11686 | 0.953960 | GCTTGGAGGGTTGTACGGTG | 60.954 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
7276 | 11687 | 1.373812 | GCTTGGAGGGTTGTACGGT | 59.626 | 57.895 | 0.00 | 0.00 | 0.00 | 4.83 |
7277 | 11688 | 0.250553 | TTGCTTGGAGGGTTGTACGG | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
7278 | 11689 | 1.265905 | GTTTGCTTGGAGGGTTGTACG | 59.734 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
7279 | 11690 | 1.265905 | CGTTTGCTTGGAGGGTTGTAC | 59.734 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
7280 | 11691 | 1.141254 | TCGTTTGCTTGGAGGGTTGTA | 59.859 | 47.619 | 0.00 | 0.00 | 0.00 | 2.41 |
7281 | 11692 | 0.106918 | TCGTTTGCTTGGAGGGTTGT | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
7282 | 11693 | 1.028905 | TTCGTTTGCTTGGAGGGTTG | 58.971 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
7283 | 11694 | 1.770294 | TTTCGTTTGCTTGGAGGGTT | 58.230 | 45.000 | 0.00 | 0.00 | 0.00 | 4.11 |
7284 | 11695 | 1.407618 | GTTTTCGTTTGCTTGGAGGGT | 59.592 | 47.619 | 0.00 | 0.00 | 0.00 | 4.34 |
7285 | 11696 | 1.599419 | CGTTTTCGTTTGCTTGGAGGG | 60.599 | 52.381 | 0.00 | 0.00 | 38.65 | 4.30 |
7286 | 11697 | 1.332375 | TCGTTTTCGTTTGCTTGGAGG | 59.668 | 47.619 | 0.00 | 0.00 | 44.46 | 4.30 |
7287 | 11698 | 2.748461 | TCGTTTTCGTTTGCTTGGAG | 57.252 | 45.000 | 0.00 | 0.00 | 44.46 | 3.86 |
7288 | 11699 | 3.701532 | AATCGTTTTCGTTTGCTTGGA | 57.298 | 38.095 | 0.00 | 0.00 | 44.46 | 3.53 |
7289 | 11700 | 3.794028 | TGAAATCGTTTTCGTTTGCTTGG | 59.206 | 39.130 | 12.90 | 0.00 | 43.49 | 3.61 |
7290 | 11701 | 4.317069 | GGTGAAATCGTTTTCGTTTGCTTG | 60.317 | 41.667 | 12.90 | 0.00 | 43.49 | 4.01 |
7291 | 11702 | 3.794564 | GGTGAAATCGTTTTCGTTTGCTT | 59.205 | 39.130 | 12.90 | 0.00 | 43.49 | 3.91 |
7292 | 11703 | 3.181495 | TGGTGAAATCGTTTTCGTTTGCT | 60.181 | 39.130 | 12.90 | 0.00 | 43.49 | 3.91 |
7293 | 11704 | 3.109619 | TGGTGAAATCGTTTTCGTTTGC | 58.890 | 40.909 | 12.90 | 2.98 | 43.49 | 3.68 |
7294 | 11705 | 5.031578 | TCTTGGTGAAATCGTTTTCGTTTG | 58.968 | 37.500 | 12.90 | 4.32 | 43.49 | 2.93 |
7295 | 11706 | 5.032220 | GTCTTGGTGAAATCGTTTTCGTTT | 58.968 | 37.500 | 12.90 | 0.00 | 43.49 | 3.60 |
7296 | 11707 | 4.334481 | AGTCTTGGTGAAATCGTTTTCGTT | 59.666 | 37.500 | 12.90 | 0.00 | 43.49 | 3.85 |
7297 | 11708 | 3.875134 | AGTCTTGGTGAAATCGTTTTCGT | 59.125 | 39.130 | 12.90 | 0.00 | 43.49 | 3.85 |
7298 | 11709 | 4.468095 | AGTCTTGGTGAAATCGTTTTCG | 57.532 | 40.909 | 12.90 | 0.86 | 43.49 | 3.46 |
7299 | 11710 | 6.899114 | ACATAGTCTTGGTGAAATCGTTTTC | 58.101 | 36.000 | 11.26 | 11.26 | 41.39 | 2.29 |
7300 | 11711 | 6.072673 | GGACATAGTCTTGGTGAAATCGTTTT | 60.073 | 38.462 | 0.00 | 0.00 | 32.47 | 2.43 |
7301 | 11712 | 5.411669 | GGACATAGTCTTGGTGAAATCGTTT | 59.588 | 40.000 | 0.00 | 0.00 | 32.47 | 3.60 |
7302 | 11713 | 4.935808 | GGACATAGTCTTGGTGAAATCGTT | 59.064 | 41.667 | 0.00 | 0.00 | 32.47 | 3.85 |
7303 | 11714 | 4.223032 | AGGACATAGTCTTGGTGAAATCGT | 59.777 | 41.667 | 0.00 | 0.00 | 32.47 | 3.73 |
7304 | 11715 | 4.759782 | AGGACATAGTCTTGGTGAAATCG | 58.240 | 43.478 | 0.00 | 0.00 | 32.47 | 3.34 |
7305 | 11716 | 5.734720 | TGAGGACATAGTCTTGGTGAAATC | 58.265 | 41.667 | 0.00 | 0.00 | 32.47 | 2.17 |
7306 | 11717 | 5.762179 | TGAGGACATAGTCTTGGTGAAAT | 57.238 | 39.130 | 0.00 | 0.00 | 32.47 | 2.17 |
7307 | 11718 | 5.560722 | TTGAGGACATAGTCTTGGTGAAA | 57.439 | 39.130 | 0.00 | 0.00 | 32.47 | 2.69 |
7308 | 11719 | 5.551233 | CTTTGAGGACATAGTCTTGGTGAA | 58.449 | 41.667 | 0.00 | 0.00 | 32.47 | 3.18 |
7309 | 11720 | 4.563580 | GCTTTGAGGACATAGTCTTGGTGA | 60.564 | 45.833 | 0.00 | 0.00 | 32.47 | 4.02 |
7310 | 11721 | 3.686726 | GCTTTGAGGACATAGTCTTGGTG | 59.313 | 47.826 | 0.00 | 0.00 | 32.47 | 4.17 |
7311 | 11722 | 3.327757 | TGCTTTGAGGACATAGTCTTGGT | 59.672 | 43.478 | 0.00 | 0.00 | 32.47 | 3.67 |
7312 | 11723 | 3.942829 | TGCTTTGAGGACATAGTCTTGG | 58.057 | 45.455 | 0.00 | 0.00 | 32.47 | 3.61 |
7313 | 11724 | 4.142730 | GCTTGCTTTGAGGACATAGTCTTG | 60.143 | 45.833 | 0.00 | 0.00 | 32.47 | 3.02 |
7314 | 11725 | 4.006319 | GCTTGCTTTGAGGACATAGTCTT | 58.994 | 43.478 | 0.00 | 0.00 | 32.47 | 3.01 |
7315 | 11726 | 3.604582 | GCTTGCTTTGAGGACATAGTCT | 58.395 | 45.455 | 0.00 | 0.00 | 32.47 | 3.24 |
7316 | 11727 | 2.349886 | CGCTTGCTTTGAGGACATAGTC | 59.650 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
7317 | 11728 | 2.028112 | TCGCTTGCTTTGAGGACATAGT | 60.028 | 45.455 | 0.00 | 0.00 | 0.00 | 2.12 |
7318 | 11729 | 2.621338 | TCGCTTGCTTTGAGGACATAG | 58.379 | 47.619 | 0.00 | 0.00 | 0.00 | 2.23 |
7319 | 11730 | 2.742053 | GTTCGCTTGCTTTGAGGACATA | 59.258 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
7320 | 11731 | 1.537202 | GTTCGCTTGCTTTGAGGACAT | 59.463 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
7321 | 11732 | 0.944386 | GTTCGCTTGCTTTGAGGACA | 59.056 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
7322 | 11733 | 0.944386 | TGTTCGCTTGCTTTGAGGAC | 59.056 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
7323 | 11734 | 1.896220 | ATGTTCGCTTGCTTTGAGGA | 58.104 | 45.000 | 0.00 | 0.00 | 0.00 | 3.71 |
7324 | 11735 | 2.744202 | ACTATGTTCGCTTGCTTTGAGG | 59.256 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
7325 | 11736 | 4.410492 | AACTATGTTCGCTTGCTTTGAG | 57.590 | 40.909 | 0.00 | 0.00 | 0.00 | 3.02 |
7326 | 11737 | 4.829064 | AAACTATGTTCGCTTGCTTTGA | 57.171 | 36.364 | 0.00 | 0.00 | 0.00 | 2.69 |
7327 | 11738 | 4.975502 | TGAAAACTATGTTCGCTTGCTTTG | 59.024 | 37.500 | 0.00 | 0.00 | 0.00 | 2.77 |
7328 | 11739 | 4.976116 | GTGAAAACTATGTTCGCTTGCTTT | 59.024 | 37.500 | 0.00 | 0.00 | 33.61 | 3.51 |
7329 | 11740 | 4.537015 | GTGAAAACTATGTTCGCTTGCTT | 58.463 | 39.130 | 0.00 | 0.00 | 33.61 | 3.91 |
7330 | 11741 | 3.058224 | GGTGAAAACTATGTTCGCTTGCT | 60.058 | 43.478 | 0.00 | 0.00 | 36.09 | 3.91 |
7331 | 11742 | 3.234386 | GGTGAAAACTATGTTCGCTTGC | 58.766 | 45.455 | 0.00 | 0.00 | 36.09 | 4.01 |
7332 | 11743 | 3.252215 | TGGGTGAAAACTATGTTCGCTTG | 59.748 | 43.478 | 0.00 | 0.00 | 36.09 | 4.01 |
7333 | 11744 | 3.482436 | TGGGTGAAAACTATGTTCGCTT | 58.518 | 40.909 | 0.00 | 0.00 | 36.09 | 4.68 |
7334 | 11745 | 3.074412 | CTGGGTGAAAACTATGTTCGCT | 58.926 | 45.455 | 0.00 | 0.00 | 36.09 | 4.93 |
7335 | 11746 | 3.071479 | TCTGGGTGAAAACTATGTTCGC | 58.929 | 45.455 | 0.00 | 0.00 | 35.26 | 4.70 |
7336 | 11747 | 3.435671 | GGTCTGGGTGAAAACTATGTTCG | 59.564 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
7337 | 11748 | 3.435671 | CGGTCTGGGTGAAAACTATGTTC | 59.564 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
7338 | 11749 | 3.181448 | ACGGTCTGGGTGAAAACTATGTT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
7339 | 11750 | 2.370849 | ACGGTCTGGGTGAAAACTATGT | 59.629 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
7340 | 11751 | 3.000727 | GACGGTCTGGGTGAAAACTATG | 58.999 | 50.000 | 0.00 | 0.00 | 0.00 | 2.23 |
7341 | 11752 | 2.904434 | AGACGGTCTGGGTGAAAACTAT | 59.096 | 45.455 | 10.41 | 0.00 | 0.00 | 2.12 |
7342 | 11753 | 2.322658 | AGACGGTCTGGGTGAAAACTA | 58.677 | 47.619 | 10.41 | 0.00 | 0.00 | 2.24 |
7343 | 11754 | 1.129058 | AGACGGTCTGGGTGAAAACT | 58.871 | 50.000 | 10.41 | 0.00 | 0.00 | 2.66 |
7344 | 11755 | 2.410939 | GTAGACGGTCTGGGTGAAAAC | 58.589 | 52.381 | 20.58 | 4.40 | 0.00 | 2.43 |
7345 | 11756 | 1.345415 | GGTAGACGGTCTGGGTGAAAA | 59.655 | 52.381 | 20.58 | 0.00 | 0.00 | 2.29 |
7346 | 11757 | 0.971386 | GGTAGACGGTCTGGGTGAAA | 59.029 | 55.000 | 20.58 | 0.00 | 0.00 | 2.69 |
7347 | 11758 | 0.113776 | AGGTAGACGGTCTGGGTGAA | 59.886 | 55.000 | 20.58 | 0.00 | 0.00 | 3.18 |
7348 | 11759 | 0.611062 | CAGGTAGACGGTCTGGGTGA | 60.611 | 60.000 | 20.58 | 0.00 | 0.00 | 4.02 |
7349 | 11760 | 0.611062 | TCAGGTAGACGGTCTGGGTG | 60.611 | 60.000 | 20.58 | 13.53 | 0.00 | 4.61 |
7350 | 11761 | 0.335361 | ATCAGGTAGACGGTCTGGGT | 59.665 | 55.000 | 20.58 | 1.72 | 0.00 | 4.51 |
7351 | 11762 | 1.409427 | GAATCAGGTAGACGGTCTGGG | 59.591 | 57.143 | 20.58 | 7.27 | 0.00 | 4.45 |
7352 | 11763 | 1.409427 | GGAATCAGGTAGACGGTCTGG | 59.591 | 57.143 | 20.58 | 7.61 | 0.00 | 3.86 |
7353 | 11764 | 1.409427 | GGGAATCAGGTAGACGGTCTG | 59.591 | 57.143 | 20.58 | 4.88 | 0.00 | 3.51 |
7354 | 11765 | 1.288335 | AGGGAATCAGGTAGACGGTCT | 59.712 | 52.381 | 15.95 | 15.95 | 0.00 | 3.85 |
7355 | 11766 | 1.777941 | AGGGAATCAGGTAGACGGTC | 58.222 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
7356 | 11767 | 2.024655 | TGTAGGGAATCAGGTAGACGGT | 60.025 | 50.000 | 0.00 | 0.00 | 0.00 | 4.83 |
7357 | 11768 | 2.361438 | GTGTAGGGAATCAGGTAGACGG | 59.639 | 54.545 | 0.00 | 0.00 | 0.00 | 4.79 |
7358 | 11769 | 3.021695 | TGTGTAGGGAATCAGGTAGACG | 58.978 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
7359 | 11770 | 3.767673 | TGTGTGTAGGGAATCAGGTAGAC | 59.232 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
7360 | 11771 | 3.767673 | GTGTGTGTAGGGAATCAGGTAGA | 59.232 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
7361 | 11772 | 3.513912 | TGTGTGTGTAGGGAATCAGGTAG | 59.486 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
7362 | 11773 | 3.259876 | GTGTGTGTGTAGGGAATCAGGTA | 59.740 | 47.826 | 0.00 | 0.00 | 0.00 | 3.08 |
7363 | 11774 | 2.038557 | GTGTGTGTGTAGGGAATCAGGT | 59.961 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
7364 | 11775 | 2.038426 | TGTGTGTGTGTAGGGAATCAGG | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
7365 | 11776 | 3.067106 | GTGTGTGTGTGTAGGGAATCAG | 58.933 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
7366 | 11777 | 2.436173 | TGTGTGTGTGTGTAGGGAATCA | 59.564 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
7367 | 11778 | 2.806244 | GTGTGTGTGTGTGTAGGGAATC | 59.194 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
7368 | 11779 | 2.171659 | TGTGTGTGTGTGTGTAGGGAAT | 59.828 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
7369 | 11780 | 1.555533 | TGTGTGTGTGTGTGTAGGGAA | 59.444 | 47.619 | 0.00 | 0.00 | 0.00 | 3.97 |
7370 | 11781 | 1.134640 | GTGTGTGTGTGTGTGTAGGGA | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
7371 | 11782 | 1.295792 | GTGTGTGTGTGTGTGTAGGG | 58.704 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
7372 | 11783 | 1.933181 | CTGTGTGTGTGTGTGTGTAGG | 59.067 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
7373 | 11784 | 2.860136 | CTCTGTGTGTGTGTGTGTGTAG | 59.140 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
7374 | 11785 | 2.494073 | TCTCTGTGTGTGTGTGTGTGTA | 59.506 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
7375 | 11786 | 1.275010 | TCTCTGTGTGTGTGTGTGTGT | 59.725 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
7376 | 11787 | 1.929169 | CTCTCTGTGTGTGTGTGTGTG | 59.071 | 52.381 | 0.00 | 0.00 | 0.00 | 3.82 |
7377 | 11788 | 1.824852 | TCTCTCTGTGTGTGTGTGTGT | 59.175 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
7378 | 11789 | 2.099756 | TCTCTCTCTGTGTGTGTGTGTG | 59.900 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
7379 | 11790 | 2.360483 | CTCTCTCTCTGTGTGTGTGTGT | 59.640 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
7380 | 11791 | 2.620585 | TCTCTCTCTCTGTGTGTGTGTG | 59.379 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
7381 | 11792 | 2.884012 | CTCTCTCTCTCTGTGTGTGTGT | 59.116 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
7382 | 11793 | 3.145286 | TCTCTCTCTCTCTGTGTGTGTG | 58.855 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
7383 | 11794 | 3.072330 | TCTCTCTCTCTCTCTGTGTGTGT | 59.928 | 47.826 | 0.00 | 0.00 | 0.00 | 3.72 |
7384 | 11795 | 3.673902 | TCTCTCTCTCTCTCTGTGTGTG | 58.326 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
7385 | 11796 | 3.582647 | TCTCTCTCTCTCTCTCTGTGTGT | 59.417 | 47.826 | 0.00 | 0.00 | 0.00 | 3.72 |
7386 | 11797 | 4.186926 | CTCTCTCTCTCTCTCTCTGTGTG | 58.813 | 52.174 | 0.00 | 0.00 | 0.00 | 3.82 |
7387 | 11798 | 3.198635 | CCTCTCTCTCTCTCTCTCTGTGT | 59.801 | 52.174 | 0.00 | 0.00 | 0.00 | 3.72 |
7388 | 11799 | 3.198635 | ACCTCTCTCTCTCTCTCTCTGTG | 59.801 | 52.174 | 0.00 | 0.00 | 0.00 | 3.66 |
7389 | 11800 | 3.454858 | ACCTCTCTCTCTCTCTCTCTGT | 58.545 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
7390 | 11801 | 5.305386 | TGATACCTCTCTCTCTCTCTCTCTG | 59.695 | 48.000 | 0.00 | 0.00 | 0.00 | 3.35 |
7391 | 11802 | 5.467738 | TGATACCTCTCTCTCTCTCTCTCT | 58.532 | 45.833 | 0.00 | 0.00 | 0.00 | 3.10 |
7392 | 11803 | 5.808366 | TGATACCTCTCTCTCTCTCTCTC | 57.192 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
7393 | 11804 | 6.560304 | AGATTGATACCTCTCTCTCTCTCTCT | 59.440 | 42.308 | 0.00 | 0.00 | 0.00 | 3.10 |
7394 | 11805 | 6.773638 | AGATTGATACCTCTCTCTCTCTCTC | 58.226 | 44.000 | 0.00 | 0.00 | 0.00 | 3.20 |
7395 | 11806 | 6.770286 | AGATTGATACCTCTCTCTCTCTCT | 57.230 | 41.667 | 0.00 | 0.00 | 0.00 | 3.10 |
7396 | 11807 | 7.907389 | TCTAGATTGATACCTCTCTCTCTCTC | 58.093 | 42.308 | 0.00 | 0.00 | 0.00 | 3.20 |
7397 | 11808 | 7.872061 | TCTAGATTGATACCTCTCTCTCTCT | 57.128 | 40.000 | 0.00 | 0.00 | 0.00 | 3.10 |
7401 | 11812 | 9.905713 | GTGATATCTAGATTGATACCTCTCTCT | 57.094 | 37.037 | 11.25 | 0.00 | 32.51 | 3.10 |
7402 | 11813 | 9.679661 | TGTGATATCTAGATTGATACCTCTCTC | 57.320 | 37.037 | 11.25 | 0.00 | 32.51 | 3.20 |
7405 | 11816 | 9.030452 | GGTTGTGATATCTAGATTGATACCTCT | 57.970 | 37.037 | 11.25 | 0.00 | 32.51 | 3.69 |
7406 | 11817 | 9.030452 | AGGTTGTGATATCTAGATTGATACCTC | 57.970 | 37.037 | 11.25 | 0.00 | 32.51 | 3.85 |
7407 | 11818 | 8.964533 | AGGTTGTGATATCTAGATTGATACCT | 57.035 | 34.615 | 11.25 | 12.85 | 32.51 | 3.08 |
7408 | 11819 | 9.429359 | CAAGGTTGTGATATCTAGATTGATACC | 57.571 | 37.037 | 11.25 | 10.98 | 32.51 | 2.73 |
7409 | 11820 | 9.429359 | CCAAGGTTGTGATATCTAGATTGATAC | 57.571 | 37.037 | 11.25 | 6.38 | 32.51 | 2.24 |
7410 | 11821 | 9.379770 | TCCAAGGTTGTGATATCTAGATTGATA | 57.620 | 33.333 | 11.25 | 0.00 | 33.99 | 2.15 |
7411 | 11822 | 8.267620 | TCCAAGGTTGTGATATCTAGATTGAT | 57.732 | 34.615 | 11.25 | 0.00 | 0.00 | 2.57 |
7412 | 11823 | 7.565029 | TCTCCAAGGTTGTGATATCTAGATTGA | 59.435 | 37.037 | 11.25 | 0.00 | 0.00 | 2.57 |
7413 | 11824 | 7.655328 | GTCTCCAAGGTTGTGATATCTAGATTG | 59.345 | 40.741 | 11.25 | 0.00 | 0.00 | 2.67 |
7414 | 11825 | 7.470702 | CGTCTCCAAGGTTGTGATATCTAGATT | 60.471 | 40.741 | 11.25 | 0.00 | 0.00 | 2.40 |
7415 | 11826 | 6.015856 | CGTCTCCAAGGTTGTGATATCTAGAT | 60.016 | 42.308 | 10.73 | 10.73 | 0.00 | 1.98 |
7416 | 11827 | 5.299531 | CGTCTCCAAGGTTGTGATATCTAGA | 59.700 | 44.000 | 3.98 | 0.00 | 0.00 | 2.43 |
7417 | 11828 | 5.508153 | CCGTCTCCAAGGTTGTGATATCTAG | 60.508 | 48.000 | 3.98 | 0.00 | 0.00 | 2.43 |
7418 | 11829 | 4.341235 | CCGTCTCCAAGGTTGTGATATCTA | 59.659 | 45.833 | 3.98 | 0.00 | 0.00 | 1.98 |
7419 | 11830 | 3.133003 | CCGTCTCCAAGGTTGTGATATCT | 59.867 | 47.826 | 3.98 | 0.00 | 0.00 | 1.98 |
7420 | 11831 | 3.118738 | ACCGTCTCCAAGGTTGTGATATC | 60.119 | 47.826 | 0.00 | 0.00 | 37.49 | 1.63 |
7421 | 11832 | 2.838202 | ACCGTCTCCAAGGTTGTGATAT | 59.162 | 45.455 | 0.00 | 0.00 | 37.49 | 1.63 |
7422 | 11833 | 2.253610 | ACCGTCTCCAAGGTTGTGATA | 58.746 | 47.619 | 0.00 | 0.00 | 37.49 | 2.15 |
7423 | 11834 | 1.056660 | ACCGTCTCCAAGGTTGTGAT | 58.943 | 50.000 | 0.00 | 0.00 | 37.49 | 3.06 |
7424 | 11835 | 2.523440 | ACCGTCTCCAAGGTTGTGA | 58.477 | 52.632 | 0.00 | 0.00 | 37.49 | 3.58 |
7429 | 11840 | 0.321653 | GCATCAACCGTCTCCAAGGT | 60.322 | 55.000 | 0.00 | 0.00 | 43.68 | 3.50 |
7430 | 11841 | 1.026718 | GGCATCAACCGTCTCCAAGG | 61.027 | 60.000 | 0.00 | 0.00 | 0.00 | 3.61 |
7431 | 11842 | 0.036010 | AGGCATCAACCGTCTCCAAG | 60.036 | 55.000 | 0.00 | 0.00 | 33.69 | 3.61 |
7432 | 11843 | 0.321564 | CAGGCATCAACCGTCTCCAA | 60.322 | 55.000 | 0.00 | 0.00 | 33.69 | 3.53 |
7433 | 11844 | 1.191489 | TCAGGCATCAACCGTCTCCA | 61.191 | 55.000 | 0.00 | 0.00 | 33.69 | 3.86 |
7441 | 11852 | 2.706339 | ACTCCTCATCAGGCATCAAC | 57.294 | 50.000 | 0.00 | 0.00 | 40.12 | 3.18 |
7453 | 11864 | 4.230733 | TCCTCTTTCATCCTCTACTCCTCA | 59.769 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
7469 | 11880 | 0.687354 | TCAAGCGCCTCTTCCTCTTT | 59.313 | 50.000 | 2.29 | 0.00 | 31.27 | 2.52 |
7470 | 11881 | 0.248843 | CTCAAGCGCCTCTTCCTCTT | 59.751 | 55.000 | 2.29 | 0.00 | 31.27 | 2.85 |
7555 | 11966 | 2.066393 | CCTCATCCTCCTCCGCCAA | 61.066 | 63.158 | 0.00 | 0.00 | 0.00 | 4.52 |
7558 | 11969 | 4.292178 | CGCCTCATCCTCCTCCGC | 62.292 | 72.222 | 0.00 | 0.00 | 0.00 | 5.54 |
7559 | 11970 | 4.292178 | GCGCCTCATCCTCCTCCG | 62.292 | 72.222 | 0.00 | 0.00 | 0.00 | 4.63 |
7609 | 12020 | 2.174854 | TCACTGATCGTCTCCCCTATCA | 59.825 | 50.000 | 0.00 | 0.00 | 0.00 | 2.15 |
7611 | 12022 | 2.588620 | GTCACTGATCGTCTCCCCTAT | 58.411 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
7612 | 12023 | 1.409802 | GGTCACTGATCGTCTCCCCTA | 60.410 | 57.143 | 0.00 | 0.00 | 0.00 | 3.53 |
7630 | 12041 | 2.522198 | ATCCTCTGCTCCTCACCGGT | 62.522 | 60.000 | 0.00 | 0.00 | 0.00 | 5.28 |
7685 | 12096 | 0.464036 | GTCGATGGCCACCACAGATA | 59.536 | 55.000 | 8.16 | 0.00 | 35.80 | 1.98 |
7686 | 12097 | 1.221840 | GTCGATGGCCACCACAGAT | 59.778 | 57.895 | 8.16 | 0.00 | 35.80 | 2.90 |
7691 | 12102 | 2.572095 | GATGTCGTCGATGGCCACCA | 62.572 | 60.000 | 8.16 | 0.00 | 38.19 | 4.17 |
7720 | 12131 | 5.204833 | CACCTCAACACACTTATTTTGACG | 58.795 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
7736 | 12147 | 2.425592 | CAGCCGTGACCACCTCAA | 59.574 | 61.111 | 0.00 | 0.00 | 0.00 | 3.02 |
7747 | 12158 | 2.594592 | GCCTTTGTCCACAGCCGT | 60.595 | 61.111 | 0.00 | 0.00 | 0.00 | 5.68 |
7763 | 12174 | 0.179163 | GCAGCTGGAAATACGGTTGC | 60.179 | 55.000 | 17.12 | 0.00 | 44.59 | 4.17 |
7772 | 12183 | 3.490031 | TTCGCCTGGCAGCTGGAAA | 62.490 | 57.895 | 20.29 | 0.00 | 0.00 | 3.13 |
7784 | 12195 | 1.598130 | GACACTGCCTTGTTCGCCT | 60.598 | 57.895 | 0.00 | 0.00 | 0.00 | 5.52 |
7786 | 12197 | 0.593128 | AATGACACTGCCTTGTTCGC | 59.407 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
7816 | 12227 | 1.000163 | TGTCTGGAGTTGTCGAGCTTC | 60.000 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
7845 | 12256 | 1.188863 | GGATGCTTTGCCTTCATGGT | 58.811 | 50.000 | 0.00 | 0.00 | 38.35 | 3.55 |
7859 | 12270 | 2.427095 | AGCATTTCCTTTAACCGGATGC | 59.573 | 45.455 | 9.46 | 9.91 | 37.00 | 3.91 |
7862 | 12273 | 3.009253 | TGGTAGCATTTCCTTTAACCGGA | 59.991 | 43.478 | 9.46 | 0.00 | 0.00 | 5.14 |
7869 | 12280 | 2.762327 | CTGCCATGGTAGCATTTCCTTT | 59.238 | 45.455 | 17.48 | 0.00 | 40.04 | 3.11 |
7898 | 12309 | 2.755650 | GATGAGGTTGGTATGGTAGCG | 58.244 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
7907 | 12318 | 1.762957 | CCTATGGTCGATGAGGTTGGT | 59.237 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
7908 | 12319 | 1.070758 | CCCTATGGTCGATGAGGTTGG | 59.929 | 57.143 | 0.00 | 0.00 | 0.00 | 3.77 |
7919 | 12330 | 2.364972 | CCCAATTGGTCCCTATGGTC | 57.635 | 55.000 | 22.91 | 0.00 | 0.00 | 4.02 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.