Multiple sequence alignment - TraesCS4A01G241900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G241900 chr4A 100.000 6752 0 0 1 6752 552153386 552146635 0.000000e+00 12469.0
1 TraesCS4A01G241900 chr4A 79.644 506 90 8 2643 3137 552198472 552197969 1.080000e-92 351.0
2 TraesCS4A01G241900 chr4A 86.022 93 11 2 2986 3077 552150344 552150253 1.550000e-16 99.0
3 TraesCS4A01G241900 chr4A 86.022 93 11 2 3043 3134 552150401 552150310 1.550000e-16 99.0
4 TraesCS4A01G241900 chr4A 84.000 100 10 5 3885 3981 683493787 683493883 2.590000e-14 91.6
5 TraesCS4A01G241900 chr4A 100.000 29 0 0 889 917 552152238 552152266 3.000000e-03 54.7
6 TraesCS4A01G241900 chr4A 100.000 29 0 0 1121 1149 552152470 552152498 3.000000e-03 54.7
7 TraesCS4A01G241900 chr4D 95.012 2025 60 17 3979 5973 46656719 46658732 0.000000e+00 3142.0
8 TraesCS4A01G241900 chr4D 94.312 1635 82 3 2292 3916 46655087 46656720 0.000000e+00 2494.0
9 TraesCS4A01G241900 chr4D 89.529 1232 80 16 1 1214 46652761 46653961 0.000000e+00 1515.0
10 TraesCS4A01G241900 chr4D 88.498 852 60 15 1465 2295 46654218 46655052 0.000000e+00 996.0
11 TraesCS4A01G241900 chr4D 98.571 210 3 0 6543 6752 123299625 123299834 8.270000e-99 372.0
12 TraesCS4A01G241900 chr4D 98.571 210 3 0 6543 6752 123331379 123331588 8.270000e-99 372.0
13 TraesCS4A01G241900 chr4D 80.556 324 30 15 6066 6359 46658734 46659054 1.140000e-52 219.0
14 TraesCS4A01G241900 chr4D 83.516 182 16 8 1288 1460 46653998 46654174 2.520000e-34 158.0
15 TraesCS4A01G241900 chr4D 95.652 69 3 0 3301 3369 46656046 46656114 1.990000e-20 111.0
16 TraesCS4A01G241900 chr4D 86.022 93 11 2 2986 3077 46655845 46655936 1.550000e-16 99.0
17 TraesCS4A01G241900 chr4D 85.263 95 8 5 3043 3134 46655788 46655879 7.210000e-15 93.5
18 TraesCS4A01G241900 chr4B 92.581 1658 89 10 2292 3916 68402308 68403964 0.000000e+00 2350.0
19 TraesCS4A01G241900 chr4B 96.439 1067 37 1 4211 5277 68412290 68413355 0.000000e+00 1759.0
20 TraesCS4A01G241900 chr4B 96.318 1032 37 1 4211 5242 68420806 68421836 0.000000e+00 1694.0
21 TraesCS4A01G241900 chr4B 95.903 952 35 3 3979 4929 68403963 68404911 0.000000e+00 1539.0
22 TraesCS4A01G241900 chr4B 91.365 857 55 8 4211 5066 68512878 68513716 0.000000e+00 1155.0
23 TraesCS4A01G241900 chr4B 94.259 749 29 6 5280 6019 68405288 68406031 0.000000e+00 1133.0
24 TraesCS4A01G241900 chr4B 85.201 1169 85 35 1 1125 68400108 68401232 0.000000e+00 1120.0
25 TraesCS4A01G241900 chr4B 96.025 478 15 4 5345 5821 68413349 68413823 0.000000e+00 774.0
26 TraesCS4A01G241900 chr4B 96.025 478 15 4 5345 5821 68423220 68423694 0.000000e+00 774.0
27 TraesCS4A01G241900 chr4B 90.217 460 40 4 1840 2295 68401815 68402273 4.510000e-166 595.0
28 TraesCS4A01G241900 chr4B 88.750 480 37 4 5322 5793 68614563 68615033 7.600000e-159 571.0
29 TraesCS4A01G241900 chr4B 87.158 366 27 8 1455 1800 68401444 68401809 1.360000e-106 398.0
30 TraesCS4A01G241900 chr4B 78.486 502 91 15 2640 3134 68359743 68360234 5.080000e-81 313.0
31 TraesCS4A01G241900 chr4B 86.572 283 25 6 6019 6291 68406076 68406355 3.960000e-77 300.0
32 TraesCS4A01G241900 chr4B 84.543 317 27 12 6225 6532 68414993 68415296 1.840000e-75 294.0
33 TraesCS4A01G241900 chr4B 92.593 135 9 1 5887 6021 68413817 68413950 6.910000e-45 193.0
34 TraesCS4A01G241900 chr4B 92.593 135 9 1 5887 6021 68423688 68423821 6.910000e-45 193.0
35 TraesCS4A01G241900 chr4B 83.710 221 11 6 6337 6532 68406509 68406729 1.160000e-42 185.0
36 TraesCS4A01G241900 chr4B 94.017 117 7 0 6297 6413 68424107 68424223 1.930000e-40 178.0
37 TraesCS4A01G241900 chr4B 80.392 255 25 13 4980 5215 68405049 68405297 3.240000e-38 171.0
38 TraesCS4A01G241900 chr4B 85.897 156 12 4 1291 1439 68401304 68401456 2.520000e-34 158.0
39 TraesCS4A01G241900 chr4B 90.598 117 10 1 5136 5251 68363165 68363281 3.260000e-33 154.0
40 TraesCS4A01G241900 chr4B 74.865 370 61 23 2968 3312 68403056 68403418 9.130000e-29 139.0
41 TraesCS4A01G241900 chr4B 94.118 68 4 0 3302 3369 68403294 68403361 3.330000e-18 104.0
42 TraesCS4A01G241900 chr4B 86.022 93 11 2 3043 3134 68403017 68403108 1.550000e-16 99.0
43 TraesCS4A01G241900 chr4B 100.000 43 0 0 5235 5277 68423184 68423226 5.610000e-11 80.5
44 TraesCS4A01G241900 chr4B 100.000 29 0 0 1121 1149 68401031 68401003 3.000000e-03 54.7
45 TraesCS4A01G241900 chr6D 99.048 210 2 0 6543 6752 124513435 124513644 1.780000e-100 377.0
46 TraesCS4A01G241900 chr6D 98.571 210 3 0 6543 6752 283226625 283226416 8.270000e-99 372.0
47 TraesCS4A01G241900 chr5A 99.038 208 2 0 6545 6752 238826903 238826696 2.300000e-99 374.0
48 TraesCS4A01G241900 chrUn 98.571 210 3 0 6543 6752 380592053 380591844 8.270000e-99 372.0
49 TraesCS4A01G241900 chr7D 98.571 210 3 0 6543 6752 203495910 203496119 8.270000e-99 372.0
50 TraesCS4A01G241900 chr7D 98.571 210 3 0 6543 6752 381915889 381916098 8.270000e-99 372.0
51 TraesCS4A01G241900 chr7D 98.571 210 3 0 6543 6752 381977851 381977642 8.270000e-99 372.0
52 TraesCS4A01G241900 chr2D 95.833 72 0 2 3915 3983 334331511 334331582 5.530000e-21 113.0
53 TraesCS4A01G241900 chr2B 96.970 66 0 2 3915 3980 693327328 693327265 7.160000e-20 110.0
54 TraesCS4A01G241900 chr6B 93.056 72 3 2 3915 3986 49622815 49622746 3.330000e-18 104.0
55 TraesCS4A01G241900 chr6B 95.455 66 2 1 3915 3980 166127647 166127583 3.330000e-18 104.0
56 TraesCS4A01G241900 chr6B 91.667 72 4 2 3915 3986 49827762 49827693 1.550000e-16 99.0
57 TraesCS4A01G241900 chr6B 85.000 60 5 4 3883 3942 609842207 609842152 2.630000e-04 58.4
58 TraesCS4A01G241900 chr7A 93.056 72 1 3 3914 3984 735744297 735744229 1.200000e-17 102.0
59 TraesCS4A01G241900 chr7A 93.056 72 1 3 3914 3984 735777194 735777126 1.200000e-17 102.0
60 TraesCS4A01G241900 chr1B 92.857 70 3 1 3915 3984 24605079 24605012 4.310000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G241900 chr4A 552146635 552153386 6751 True 4222.333333 12469 90.681333 1 6752 3 chr4A.!!$R2 6751
1 TraesCS4A01G241900 chr4A 552197969 552198472 503 True 351.000000 351 79.644000 2643 3137 1 chr4A.!!$R1 494
2 TraesCS4A01G241900 chr4D 46652761 46659054 6293 False 980.833333 3142 88.706667 1 6359 9 chr4D.!!$F3 6358
3 TraesCS4A01G241900 chr4B 68512878 68513716 838 False 1155.000000 1155 91.365000 4211 5066 1 chr4B.!!$F1 855
4 TraesCS4A01G241900 chr4B 68412290 68415296 3006 False 755.000000 1759 92.400000 4211 6532 4 chr4B.!!$F5 2321
5 TraesCS4A01G241900 chr4B 68400108 68406729 6621 False 637.769231 2350 87.453462 1 6532 13 chr4B.!!$F4 6531
6 TraesCS4A01G241900 chr4B 68420806 68424223 3417 False 583.900000 1694 95.790600 4211 6413 5 chr4B.!!$F6 2202
7 TraesCS4A01G241900 chr4B 68359743 68363281 3538 False 233.500000 313 84.542000 2640 5251 2 chr4B.!!$F3 2611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
893 938 0.041090 ACCCCCAAATGCGGAGATTT 59.959 50.0 0.00 0.00 0.00 2.17 F
1214 1263 0.538118 AGTCTAGAGTCGCGGAGTCT 59.462 55.0 6.13 13.11 43.70 3.24 F
1215 1264 0.653636 GTCTAGAGTCGCGGAGTCTG 59.346 60.0 19.58 12.55 41.73 3.51 F
2711 2941 0.761802 CCCAAGGGAGATCAGGCTAC 59.238 60.0 0.00 0.00 37.50 3.58 F
3927 4253 0.033306 ACTTCCTACTCCCTCCGTCC 60.033 60.0 0.00 0.00 0.00 4.79 F
4325 4651 0.032117 TGGGAGGAGTGTCGATGGAT 60.032 55.0 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2141 2316 1.664151 GCGTCATAGTTTACACTGGCC 59.336 52.381 0.00 0.00 34.06 5.36 R
2776 3006 1.724582 CGAATGTTTCCCATCCCGCC 61.725 60.000 0.00 0.00 31.75 6.13 R
3013 3252 1.818060 TCAGGATGGTTGGCATTTTCG 59.182 47.619 0.00 0.00 36.16 3.46 R
4310 4636 0.826715 CACCATCCATCGACACTCCT 59.173 55.000 0.00 0.00 0.00 3.69 R
4985 6114 0.609131 TCTTGTGGCTTTGGGCTAGC 60.609 55.000 6.04 6.04 41.46 3.42 R
6203 9071 0.243907 GCTCGAGCAACCTGTAGTCA 59.756 55.000 31.91 0.00 41.59 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 5.345741 CGGTTCAATGAAAGGCAAATGTTAG 59.654 40.000 0.00 0.00 0.00 2.34
87 88 7.259882 TCAATGAAAGGCAAATGTTAGCATAG 58.740 34.615 0.00 0.00 34.39 2.23
124 125 6.683974 CCAATATCTTGGTTACAGTTCCTG 57.316 41.667 1.68 0.00 45.90 3.86
154 155 3.004629 CAGTTGCACAAGATTTGGCAGTA 59.995 43.478 0.00 0.00 37.84 2.74
157 158 2.293122 TGCACAAGATTTGGCAGTACAC 59.707 45.455 0.00 0.00 33.81 2.90
161 162 2.113860 AGATTTGGCAGTACACGCAT 57.886 45.000 9.23 0.00 0.00 4.73
176 177 7.171508 CAGTACACGCATACCATATTCTTTCAT 59.828 37.037 0.00 0.00 0.00 2.57
249 250 2.359602 ACTCGTCGGCTCGGAAGA 60.360 61.111 0.00 0.00 39.12 2.87
259 265 2.032550 CGGCTCGGAAGATACTCGTAAA 59.967 50.000 0.00 0.00 40.84 2.01
272 278 4.323553 ACTCGTAAAGATAGGATGTGCC 57.676 45.455 0.00 0.00 0.00 5.01
306 312 9.171877 TGTTTTTCTCAAAATAAAACATGGCTT 57.828 25.926 7.93 0.00 43.13 4.35
465 487 0.602905 AGGCAGTCAAGTAACCGTGC 60.603 55.000 0.00 0.00 0.00 5.34
602 638 4.222847 GGTCTCGTCATCCCCGCC 62.223 72.222 0.00 0.00 0.00 6.13
620 658 0.830023 CCGAGATTCTCCCCCTCTCC 60.830 65.000 8.09 0.00 33.40 3.71
621 659 0.105964 CGAGATTCTCCCCCTCTCCA 60.106 60.000 8.09 0.00 33.40 3.86
622 660 1.482177 CGAGATTCTCCCCCTCTCCAT 60.482 57.143 8.09 0.00 33.40 3.41
623 661 2.256306 GAGATTCTCCCCCTCTCCATC 58.744 57.143 1.97 0.00 31.25 3.51
659 697 0.103937 GCTCCTAGGCTAGCACTGTG 59.896 60.000 18.24 2.76 38.63 3.66
752 790 1.225745 CGCCGCTCACGATGTTTTC 60.226 57.895 0.00 0.00 43.93 2.29
792 830 4.125695 CGTCCCGAGGTTCCCGTC 62.126 72.222 0.00 0.00 0.00 4.79
869 914 7.394289 ATCCGGCTTCTTTGGATTGGATACA 62.394 44.000 0.00 0.00 39.45 2.29
893 938 0.041090 ACCCCCAAATGCGGAGATTT 59.959 50.000 0.00 0.00 0.00 2.17
952 1000 3.263170 TCCAGTACCAAATCTTGCAGCTA 59.737 43.478 0.00 0.00 0.00 3.32
966 1014 6.581712 TCTTGCAGCTAATGGTTTTTCTTTT 58.418 32.000 0.00 0.00 0.00 2.27
967 1015 7.721402 TCTTGCAGCTAATGGTTTTTCTTTTA 58.279 30.769 0.00 0.00 0.00 1.52
968 1016 8.200792 TCTTGCAGCTAATGGTTTTTCTTTTAA 58.799 29.630 0.00 0.00 0.00 1.52
969 1017 8.900983 TTGCAGCTAATGGTTTTTCTTTTAAT 57.099 26.923 0.00 0.00 0.00 1.40
970 1018 8.900983 TGCAGCTAATGGTTTTTCTTTTAATT 57.099 26.923 0.00 0.00 0.00 1.40
971 1019 9.336171 TGCAGCTAATGGTTTTTCTTTTAATTT 57.664 25.926 0.00 0.00 0.00 1.82
980 1028 8.596380 TGGTTTTTCTTTTAATTTAACTGTGCG 58.404 29.630 0.00 0.00 0.00 5.34
995 1043 1.020861 GTGCGATGCATGTCCAGTGA 61.021 55.000 2.46 0.00 41.91 3.41
996 1044 0.741927 TGCGATGCATGTCCAGTGAG 60.742 55.000 2.46 0.00 31.71 3.51
1038 1086 0.757188 AGCGGAGGGATGAACTCGAT 60.757 55.000 0.00 0.00 35.82 3.59
1072 1120 1.420430 TGACCGGGAGAAACACTTCT 58.580 50.000 6.32 0.00 44.93 2.85
1125 1173 5.067805 GGAGATGGTAAATCACATTCAACCC 59.932 44.000 0.00 0.00 30.93 4.11
1126 1174 4.640201 AGATGGTAAATCACATTCAACCCG 59.360 41.667 0.00 0.00 30.93 5.28
1127 1175 3.757270 TGGTAAATCACATTCAACCCGT 58.243 40.909 0.00 0.00 30.93 5.28
1128 1176 4.145807 TGGTAAATCACATTCAACCCGTT 58.854 39.130 0.00 0.00 30.93 4.44
1129 1177 4.022762 TGGTAAATCACATTCAACCCGTTG 60.023 41.667 0.97 0.97 41.71 4.10
1141 1189 5.925506 TCAACCCGTTGAGTATGATTAGA 57.074 39.130 6.17 0.00 43.90 2.10
1142 1190 6.479972 TCAACCCGTTGAGTATGATTAGAT 57.520 37.500 6.17 0.00 43.90 1.98
1143 1191 7.591421 TCAACCCGTTGAGTATGATTAGATA 57.409 36.000 6.17 0.00 43.90 1.98
1144 1192 8.014070 TCAACCCGTTGAGTATGATTAGATAA 57.986 34.615 6.17 0.00 43.90 1.75
1145 1193 8.479689 TCAACCCGTTGAGTATGATTAGATAAA 58.520 33.333 6.17 0.00 43.90 1.40
1146 1194 9.273016 CAACCCGTTGAGTATGATTAGATAAAT 57.727 33.333 1.15 0.00 42.93 1.40
1147 1195 9.490379 AACCCGTTGAGTATGATTAGATAAATC 57.510 33.333 0.00 0.00 43.77 2.17
1148 1196 8.871125 ACCCGTTGAGTATGATTAGATAAATCT 58.129 33.333 0.00 0.00 43.83 2.40
1198 1247 1.543429 CCCCCATTATTCTGCGGAGTC 60.543 57.143 3.10 0.00 0.00 3.36
1206 1255 1.370609 TTCTGCGGAGTCTAGAGTCG 58.629 55.000 19.13 15.38 0.00 4.18
1207 1256 1.090625 TCTGCGGAGTCTAGAGTCGC 61.091 60.000 24.94 24.94 33.84 5.19
1214 1263 0.538118 AGTCTAGAGTCGCGGAGTCT 59.462 55.000 6.13 13.11 43.70 3.24
1215 1264 0.653636 GTCTAGAGTCGCGGAGTCTG 59.346 60.000 19.58 12.55 41.73 3.51
1216 1265 1.090625 TCTAGAGTCGCGGAGTCTGC 61.091 60.000 14.34 14.34 41.73 4.26
1231 1280 2.280119 TGCGTCGGCAGATATGCC 60.280 61.111 21.72 21.72 46.21 4.40
1242 1291 3.341823 GCAGATATGCCCAGTTCATAGG 58.658 50.000 0.00 0.00 30.84 2.57
1243 1292 3.008375 GCAGATATGCCCAGTTCATAGGA 59.992 47.826 0.00 0.00 30.84 2.94
1247 1296 2.057137 TGCCCAGTTCATAGGATTGC 57.943 50.000 0.00 0.00 0.00 3.56
1255 1304 4.639310 CAGTTCATAGGATTGCTGCTTCTT 59.361 41.667 0.00 0.00 0.00 2.52
1257 1306 6.018098 CAGTTCATAGGATTGCTGCTTCTTAG 60.018 42.308 0.00 0.00 0.00 2.18
1282 1331 9.236006 AGCAAATTAGTCAGATTCTTGTATTGT 57.764 29.630 0.00 0.00 0.00 2.71
1289 1338 7.671302 AGTCAGATTCTTGTATTGTACTGTGT 58.329 34.615 0.00 0.00 0.00 3.72
1304 1392 9.733556 ATTGTACTGTGTTGGTTTATCAGATTA 57.266 29.630 0.00 0.00 0.00 1.75
1309 1397 8.109634 ACTGTGTTGGTTTATCAGATTATTCCT 58.890 33.333 0.00 0.00 0.00 3.36
1333 1421 9.778993 CCTTCACATTCTATTGTTCAATAACAG 57.221 33.333 6.69 0.00 45.99 3.16
1334 1422 9.778993 CTTCACATTCTATTGTTCAATAACAGG 57.221 33.333 6.69 1.93 45.99 4.00
1335 1423 8.862325 TCACATTCTATTGTTCAATAACAGGT 57.138 30.769 6.69 2.42 45.99 4.00
1437 1540 6.528537 AAATTTGACCATACATGCTTGCTA 57.471 33.333 0.00 0.00 0.00 3.49
1438 1541 4.963276 TTTGACCATACATGCTTGCTAC 57.037 40.909 0.00 0.00 0.00 3.58
1485 1627 5.221823 TGCTACATATGGTTAGCTATTGGCA 60.222 40.000 20.14 8.42 44.79 4.92
1490 1632 3.266510 TGGTTAGCTATTGGCAGACTG 57.733 47.619 0.00 0.00 44.79 3.51
1663 1829 8.916628 TGCAAGAATTATACCTACATGCATTA 57.083 30.769 0.00 0.00 36.46 1.90
1777 1947 4.663334 ACCTTTTACTTCCACCTCATTCC 58.337 43.478 0.00 0.00 0.00 3.01
1780 1950 5.514834 CCTTTTACTTCCACCTCATTCCTCA 60.515 44.000 0.00 0.00 0.00 3.86
1861 2032 5.885912 TCTGCAAGTTTTACACCTTTTCTCT 59.114 36.000 0.00 0.00 33.76 3.10
1863 2034 5.885912 TGCAAGTTTTACACCTTTTCTCTCT 59.114 36.000 0.00 0.00 0.00 3.10
1918 2089 6.595716 AGACTTGTACATTTGGAATACTCTGC 59.404 38.462 0.00 0.00 0.00 4.26
1919 2090 6.237901 ACTTGTACATTTGGAATACTCTGCA 58.762 36.000 0.00 0.00 0.00 4.41
1921 2092 5.804639 TGTACATTTGGAATACTCTGCACT 58.195 37.500 0.00 0.00 0.00 4.40
1922 2093 6.237901 TGTACATTTGGAATACTCTGCACTT 58.762 36.000 0.00 0.00 0.00 3.16
1923 2094 5.633830 ACATTTGGAATACTCTGCACTTG 57.366 39.130 0.00 0.00 0.00 3.16
1924 2095 4.082571 ACATTTGGAATACTCTGCACTTGC 60.083 41.667 0.00 0.00 42.50 4.01
1960 2134 9.881649 TCTAATGATATGCATGAGAACTATTCC 57.118 33.333 10.16 0.00 40.80 3.01
1961 2135 7.934855 AATGATATGCATGAGAACTATTCCC 57.065 36.000 10.16 0.00 37.28 3.97
1962 2136 6.438186 TGATATGCATGAGAACTATTCCCA 57.562 37.500 10.16 0.00 0.00 4.37
1977 2151 6.061441 ACTATTCCCATCGAAAACATATGCA 58.939 36.000 1.58 0.00 33.08 3.96
1983 2157 5.446709 CCATCGAAAACATATGCATGAGAC 58.553 41.667 10.16 0.00 35.96 3.36
2013 2187 2.934107 TATAGTAAAATTGGCGCGCG 57.066 45.000 28.44 28.44 0.00 6.86
2025 2200 0.868602 GGCGCGCGTTAGAATCTACA 60.869 55.000 32.35 0.00 0.00 2.74
2028 2203 2.182825 CGCGCGTTAGAATCTACAAGT 58.817 47.619 24.19 0.00 0.00 3.16
2033 2208 6.507456 CGCGCGTTAGAATCTACAAGTTAATT 60.507 38.462 24.19 0.00 0.00 1.40
2036 2211 9.990888 CGCGTTAGAATCTACAAGTTAATTATC 57.009 33.333 0.00 0.00 0.00 1.75
2073 2248 7.977818 TGGATAGTGAATAACTAATGGCTCAT 58.022 34.615 0.00 0.00 44.57 2.90
2117 2292 8.514594 TGCAGTTTCTCATAAGAATAAGTTTGG 58.485 33.333 0.00 0.00 41.12 3.28
2141 2316 4.639135 TGCTCTGTACACTACTGCATAG 57.361 45.455 0.00 0.00 36.89 2.23
2156 2331 4.164221 ACTGCATAGGCCAGTGTAAACTAT 59.836 41.667 5.01 0.00 40.13 2.12
2159 2334 4.511826 GCATAGGCCAGTGTAAACTATGAC 59.488 45.833 5.01 9.72 42.06 3.06
2161 2336 1.664151 GGCCAGTGTAAACTATGACGC 59.336 52.381 0.00 0.00 0.00 5.19
2182 2357 3.846023 GCGAATTGTATCCAAGTGATGCG 60.846 47.826 0.00 0.00 38.78 4.73
2184 2359 4.506288 CGAATTGTATCCAAGTGATGCGTA 59.494 41.667 0.00 0.00 38.78 4.42
2290 2467 7.652909 TCATTTCAGTTTTAGCATTGAAAGGTG 59.347 33.333 9.36 3.03 41.28 4.00
2293 2508 6.503524 TCAGTTTTAGCATTGAAAGGTGTTC 58.496 36.000 0.00 0.00 0.00 3.18
2298 2513 6.554334 TTAGCATTGAAAGGTGTTCAGTAC 57.446 37.500 0.00 0.00 0.00 2.73
2331 2546 7.438160 TGTTACCATGCGATCTTTCTATGTTAG 59.562 37.037 0.00 0.00 0.00 2.34
2362 2577 8.783093 TGTATTCTTTGTTTGATCAGTTACCTG 58.217 33.333 0.00 0.00 40.25 4.00
2380 2595 2.089980 CTGGGAAGCTGAAACTCCATG 58.910 52.381 3.85 0.00 0.00 3.66
2391 2606 6.381420 AGCTGAAACTCCATGTAGTAGTGTAT 59.619 38.462 0.00 0.00 0.00 2.29
2403 2618 9.909644 CATGTAGTAGTGTATTATTGTAGGGAC 57.090 37.037 0.00 0.00 0.00 4.46
2468 2683 9.414295 CTTTTTCATGAATCAAAATCAGTAGCA 57.586 29.630 9.40 0.00 0.00 3.49
2486 2701 8.084684 TCAGTAGCATGATAGCATAAACACTAG 58.915 37.037 0.00 0.00 36.85 2.57
2493 2708 3.931907 AGCATAAACACTAGATGCCCA 57.068 42.857 9.15 0.00 45.76 5.36
2498 2713 3.618690 AAACACTAGATGCCCAGAGAC 57.381 47.619 0.00 0.00 0.00 3.36
2503 2718 3.196469 CACTAGATGCCCAGAGACTGAAA 59.804 47.826 0.00 0.00 32.44 2.69
2529 2744 3.676093 AGAGTTAAGCTAGCGCCTTTTT 58.324 40.909 9.55 0.00 36.60 1.94
2560 2775 7.448588 CTTGTTCTCAAGTCAGATATCGAAG 57.551 40.000 0.00 0.00 44.09 3.79
2562 2777 6.556212 TGTTCTCAAGTCAGATATCGAAGAC 58.444 40.000 14.35 14.35 42.51 3.01
2579 2794 4.446719 CGAAGACCTTATTTACGCCATACC 59.553 45.833 0.00 0.00 0.00 2.73
2585 2800 4.377021 CTTATTTACGCCATACCTGCTCA 58.623 43.478 0.00 0.00 0.00 4.26
2602 2832 5.009010 CCTGCTCATTGTTTACACAAGAACT 59.991 40.000 0.43 0.00 46.25 3.01
2603 2833 5.820131 TGCTCATTGTTTACACAAGAACTG 58.180 37.500 0.43 0.00 46.25 3.16
2620 2850 7.917505 ACAAGAACTGTGCTCTTAAAATTTGAG 59.082 33.333 0.00 0.00 36.69 3.02
2687 2917 2.297698 TCTGAGACGTTTCAGGGGTA 57.702 50.000 29.48 12.55 43.78 3.69
2711 2941 0.761802 CCCAAGGGAGATCAGGCTAC 59.238 60.000 0.00 0.00 37.50 3.58
2926 3156 4.096532 TCTGTTATTAGAGACAGTGCTCCG 59.903 45.833 9.94 0.00 42.90 4.63
3013 3252 1.953559 TGGAAGTGCAATCGCCTATC 58.046 50.000 7.41 0.00 37.32 2.08
3029 3268 3.550842 GCCTATCGAAAATGCCAACCATC 60.551 47.826 0.00 0.00 31.43 3.51
3233 3547 0.539051 ACCATCTACTGAGGCTGTGC 59.461 55.000 0.00 0.00 0.00 4.57
3294 3608 5.072736 TGGATCATTCTAATGGTCATGCTCT 59.927 40.000 15.83 0.00 46.08 4.09
3402 3716 4.074970 CCTACCAAGCTGAGACAAACAAT 58.925 43.478 0.00 0.00 0.00 2.71
3434 3748 3.560068 GGATTACTTGAGTATGGGCAACG 59.440 47.826 0.00 0.00 37.60 4.10
3484 3804 5.774690 TCCCAGTGAGTTATTTCTTGCAATT 59.225 36.000 0.00 0.00 0.00 2.32
3685 4008 3.269178 CAGAAGGAGGAAGTTGATGAGC 58.731 50.000 0.00 0.00 0.00 4.26
3807 4130 5.012561 ACTGTTGAAGGAGCATTCTTCTAGT 59.987 40.000 12.59 11.14 0.00 2.57
3918 4244 6.492087 ACTTGCAGATCCTATACTTCCTACTC 59.508 42.308 0.00 0.00 0.00 2.59
3919 4245 5.326069 TGCAGATCCTATACTTCCTACTCC 58.674 45.833 0.00 0.00 0.00 3.85
3920 4246 4.707934 GCAGATCCTATACTTCCTACTCCC 59.292 50.000 0.00 0.00 0.00 4.30
3921 4247 5.517655 GCAGATCCTATACTTCCTACTCCCT 60.518 48.000 0.00 0.00 0.00 4.20
3922 4248 6.184789 CAGATCCTATACTTCCTACTCCCTC 58.815 48.000 0.00 0.00 0.00 4.30
3923 4249 5.254501 AGATCCTATACTTCCTACTCCCTCC 59.745 48.000 0.00 0.00 0.00 4.30
3924 4250 3.330110 TCCTATACTTCCTACTCCCTCCG 59.670 52.174 0.00 0.00 0.00 4.63
3926 4252 2.725221 TACTTCCTACTCCCTCCGTC 57.275 55.000 0.00 0.00 0.00 4.79
3927 4253 0.033306 ACTTCCTACTCCCTCCGTCC 60.033 60.000 0.00 0.00 0.00 4.79
3928 4254 0.756070 CTTCCTACTCCCTCCGTCCC 60.756 65.000 0.00 0.00 0.00 4.46
3929 4255 1.512201 TTCCTACTCCCTCCGTCCCA 61.512 60.000 0.00 0.00 0.00 4.37
3930 4256 1.001248 CCTACTCCCTCCGTCCCAA 59.999 63.158 0.00 0.00 0.00 4.12
3931 4257 0.616679 CCTACTCCCTCCGTCCCAAA 60.617 60.000 0.00 0.00 0.00 3.28
3932 4258 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
3933 4259 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
3935 4261 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3936 4262 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3937 4263 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3938 4264 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3939 4265 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3940 4266 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3942 4268 4.081309 CCTCCGTCCCAAAATAAGTGTCTA 60.081 45.833 0.00 0.00 0.00 2.59
3943 4269 4.824289 TCCGTCCCAAAATAAGTGTCTAC 58.176 43.478 0.00 0.00 0.00 2.59
3946 4272 6.211184 TCCGTCCCAAAATAAGTGTCTACTAA 59.789 38.462 0.00 0.00 35.69 2.24
3947 4273 6.534079 CCGTCCCAAAATAAGTGTCTACTAAG 59.466 42.308 0.00 0.00 35.69 2.18
3948 4274 6.534079 CGTCCCAAAATAAGTGTCTACTAAGG 59.466 42.308 0.00 0.00 35.69 2.69
3950 4276 7.881751 GTCCCAAAATAAGTGTCTACTAAGGTT 59.118 37.037 0.00 0.00 35.69 3.50
3951 4277 9.103582 TCCCAAAATAAGTGTCTACTAAGGTTA 57.896 33.333 0.00 0.00 35.69 2.85
3952 4278 9.729281 CCCAAAATAAGTGTCTACTAAGGTTAA 57.271 33.333 0.00 0.00 35.69 2.01
3967 4293 8.631480 ACTAAGGTTAAGACACTTATTTTGGG 57.369 34.615 0.00 0.00 0.00 4.12
3968 4294 8.442374 ACTAAGGTTAAGACACTTATTTTGGGA 58.558 33.333 0.00 0.00 0.00 4.37
3969 4295 7.520451 AAGGTTAAGACACTTATTTTGGGAC 57.480 36.000 0.00 0.00 0.00 4.46
3970 4296 5.704053 AGGTTAAGACACTTATTTTGGGACG 59.296 40.000 0.00 0.00 0.00 4.79
3971 4297 5.106436 GGTTAAGACACTTATTTTGGGACGG 60.106 44.000 0.00 0.00 0.00 4.79
3972 4298 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
3973 4299 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
3974 4300 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3975 4301 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3976 4302 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3977 4303 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3986 4312 3.389983 TGGGACGGAGGGAGTATTATTTG 59.610 47.826 0.00 0.00 0.00 2.32
4107 4433 3.672397 CGAAGGATATGTCTTCAGCGATG 59.328 47.826 0.00 0.00 40.27 3.84
4142 4468 3.546815 GGATGTGCAATTTAGCAGTAGCG 60.547 47.826 0.00 0.00 46.69 4.26
4143 4469 2.422597 TGTGCAATTTAGCAGTAGCGT 58.577 42.857 0.00 0.00 46.69 5.07
4204 4530 6.997655 TGTGAAAGACAATGATGTAGAGACT 58.002 36.000 0.00 0.00 40.74 3.24
4279 4605 5.302568 GGAAGTCCATATCATCCATGCAAAA 59.697 40.000 0.00 0.00 35.64 2.44
4321 4647 0.544357 TTGGTGGGAGGAGTGTCGAT 60.544 55.000 0.00 0.00 0.00 3.59
4325 4651 0.032117 TGGGAGGAGTGTCGATGGAT 60.032 55.000 0.00 0.00 0.00 3.41
4500 4826 3.996150 TGAAACGGTTAACTCGAGTCT 57.004 42.857 20.33 11.63 0.00 3.24
4535 4861 5.589452 GGTATGACGAGTTCTTCCTTCTCTA 59.411 44.000 0.00 0.00 0.00 2.43
4735 5084 7.475840 GCATACCTTTAATTCAGAAGAAGGTG 58.524 38.462 24.97 16.45 46.91 4.00
4985 6114 2.246739 CGCATACCATCACAGGCCG 61.247 63.158 0.00 0.00 0.00 6.13
5479 8259 6.376299 CCATCATCTGACATTCTTCTTTTCCA 59.624 38.462 0.00 0.00 0.00 3.53
5790 8570 0.168128 GTTTCCACCGATCCTTTGCG 59.832 55.000 0.00 0.00 0.00 4.85
5791 8571 0.250553 TTTCCACCGATCCTTTGCGT 60.251 50.000 0.00 0.00 0.00 5.24
5792 8572 0.672401 TTCCACCGATCCTTTGCGTC 60.672 55.000 0.00 0.00 0.00 5.19
5952 8763 0.298707 CGAGTCGCGGTGATGAATTG 59.701 55.000 6.13 0.00 36.03 2.32
6036 8892 3.373565 CTGGCCCCTTCCGTTTGC 61.374 66.667 0.00 0.00 0.00 3.68
6085 8941 0.709397 TTGCCTGGGATGGGATTCAA 59.291 50.000 0.00 0.00 0.00 2.69
6103 8963 4.070630 TCAACCTTTGCATTTTCCTTGG 57.929 40.909 0.00 0.00 0.00 3.61
6104 8964 3.454082 TCAACCTTTGCATTTTCCTTGGT 59.546 39.130 0.00 0.00 0.00 3.67
6105 8965 3.751479 ACCTTTGCATTTTCCTTGGTC 57.249 42.857 0.00 0.00 0.00 4.02
6199 9067 6.581171 AGTAAAAGCTTGGAAGAATTGAGG 57.419 37.500 0.00 0.00 0.00 3.86
6203 9071 4.328118 AGCTTGGAAGAATTGAGGGAAT 57.672 40.909 0.00 0.00 0.00 3.01
6448 10244 1.961277 CCTTGCGCGTTTGAGAGGT 60.961 57.895 8.43 0.00 0.00 3.85
6543 10339 4.742201 CGCGGGGTGTGGTCTGAG 62.742 72.222 0.00 0.00 0.00 3.35
6544 10340 3.311110 GCGGGGTGTGGTCTGAGA 61.311 66.667 0.00 0.00 0.00 3.27
6545 10341 2.660064 GCGGGGTGTGGTCTGAGAT 61.660 63.158 0.00 0.00 0.00 2.75
6546 10342 1.983224 CGGGGTGTGGTCTGAGATT 59.017 57.895 0.00 0.00 0.00 2.40
6547 10343 0.324943 CGGGGTGTGGTCTGAGATTT 59.675 55.000 0.00 0.00 0.00 2.17
6548 10344 1.676014 CGGGGTGTGGTCTGAGATTTC 60.676 57.143 0.00 0.00 0.00 2.17
6549 10345 1.630878 GGGGTGTGGTCTGAGATTTCT 59.369 52.381 0.00 0.00 0.00 2.52
6550 10346 2.355209 GGGGTGTGGTCTGAGATTTCTC 60.355 54.545 0.46 0.46 43.15 2.87
6566 10362 8.604640 GAGATTTCTCATTCTCAATGCTATCA 57.395 34.615 2.69 0.00 42.42 2.15
6567 10363 9.221933 GAGATTTCTCATTCTCAATGCTATCAT 57.778 33.333 2.69 0.00 42.42 2.45
6568 10364 9.221933 AGATTTCTCATTCTCAATGCTATCATC 57.778 33.333 0.00 0.00 38.77 2.92
6569 10365 8.919777 ATTTCTCATTCTCAATGCTATCATCA 57.080 30.769 0.00 0.00 38.77 3.07
6570 10366 8.919777 TTTCTCATTCTCAATGCTATCATCAT 57.080 30.769 0.00 0.00 38.77 2.45
6573 10369 9.601217 TCTCATTCTCAATGCTATCATCATATG 57.399 33.333 0.00 0.00 38.77 1.78
6574 10370 9.384764 CTCATTCTCAATGCTATCATCATATGT 57.615 33.333 1.90 0.00 38.77 2.29
6575 10371 9.379791 TCATTCTCAATGCTATCATCATATGTC 57.620 33.333 1.90 0.00 38.77 3.06
6576 10372 9.384764 CATTCTCAATGCTATCATCATATGTCT 57.615 33.333 1.90 0.00 31.27 3.41
6577 10373 8.999220 TTCTCAATGCTATCATCATATGTCTC 57.001 34.615 1.90 0.00 31.27 3.36
6578 10374 7.256286 TCTCAATGCTATCATCATATGTCTCG 58.744 38.462 1.90 0.00 31.27 4.04
6579 10375 6.335777 TCAATGCTATCATCATATGTCTCGG 58.664 40.000 1.90 0.00 31.27 4.63
6580 10376 6.153340 TCAATGCTATCATCATATGTCTCGGA 59.847 38.462 1.90 0.00 31.27 4.55
6581 10377 5.982890 TGCTATCATCATATGTCTCGGAA 57.017 39.130 1.90 0.00 0.00 4.30
6582 10378 5.714047 TGCTATCATCATATGTCTCGGAAC 58.286 41.667 1.90 0.00 0.00 3.62
6583 10379 5.243730 TGCTATCATCATATGTCTCGGAACA 59.756 40.000 1.90 0.00 0.00 3.18
6584 10380 6.159293 GCTATCATCATATGTCTCGGAACAA 58.841 40.000 1.90 0.00 31.81 2.83
6585 10381 6.815641 GCTATCATCATATGTCTCGGAACAAT 59.184 38.462 1.90 0.00 31.81 2.71
6586 10382 7.976175 GCTATCATCATATGTCTCGGAACAATA 59.024 37.037 1.90 0.00 31.81 1.90
6587 10383 9.860898 CTATCATCATATGTCTCGGAACAATAA 57.139 33.333 1.90 0.00 31.81 1.40
6589 10385 8.956533 TCATCATATGTCTCGGAACAATAAAA 57.043 30.769 1.90 0.00 31.81 1.52
6590 10386 9.559732 TCATCATATGTCTCGGAACAATAAAAT 57.440 29.630 1.90 0.00 31.81 1.82
6596 10392 7.605410 TGTCTCGGAACAATAAAATAGAACC 57.395 36.000 0.00 0.00 0.00 3.62
6597 10393 7.391620 TGTCTCGGAACAATAAAATAGAACCT 58.608 34.615 0.00 0.00 0.00 3.50
6598 10394 7.333423 TGTCTCGGAACAATAAAATAGAACCTG 59.667 37.037 0.00 0.00 0.00 4.00
6599 10395 7.333672 GTCTCGGAACAATAAAATAGAACCTGT 59.666 37.037 0.00 0.00 0.00 4.00
6600 10396 8.533657 TCTCGGAACAATAAAATAGAACCTGTA 58.466 33.333 0.00 0.00 0.00 2.74
6601 10397 9.326413 CTCGGAACAATAAAATAGAACCTGTAT 57.674 33.333 0.00 0.00 0.00 2.29
6629 10425 9.830294 CTTTTATTTGTTACCCTTACTAAACCG 57.170 33.333 0.00 0.00 0.00 4.44
6630 10426 5.885230 ATTTGTTACCCTTACTAAACCGC 57.115 39.130 0.00 0.00 0.00 5.68
6631 10427 4.348863 TTGTTACCCTTACTAAACCGCA 57.651 40.909 0.00 0.00 0.00 5.69
6632 10428 3.929094 TGTTACCCTTACTAAACCGCAG 58.071 45.455 0.00 0.00 0.00 5.18
6633 10429 3.324556 TGTTACCCTTACTAAACCGCAGT 59.675 43.478 0.00 0.00 0.00 4.40
6634 10430 4.526262 TGTTACCCTTACTAAACCGCAGTA 59.474 41.667 0.00 0.00 0.00 2.74
6635 10431 5.011533 TGTTACCCTTACTAAACCGCAGTAA 59.988 40.000 0.00 0.00 36.40 2.24
6642 10438 4.037858 ACTAAACCGCAGTAAGGATACG 57.962 45.455 0.00 0.00 46.39 3.06
6643 10439 3.696051 ACTAAACCGCAGTAAGGATACGA 59.304 43.478 0.00 0.00 46.39 3.43
6644 10440 3.598019 AAACCGCAGTAAGGATACGAA 57.402 42.857 0.00 0.00 46.39 3.85
6645 10441 3.814005 AACCGCAGTAAGGATACGAAT 57.186 42.857 0.00 0.00 46.39 3.34
6646 10442 4.924305 AACCGCAGTAAGGATACGAATA 57.076 40.909 0.00 0.00 46.39 1.75
6647 10443 4.234530 ACCGCAGTAAGGATACGAATAC 57.765 45.455 0.00 0.00 46.39 1.89
6648 10444 3.231965 CCGCAGTAAGGATACGAATACG 58.768 50.000 0.00 0.00 46.39 3.06
6649 10445 3.058708 CCGCAGTAAGGATACGAATACGA 60.059 47.826 0.00 0.00 46.39 3.43
6650 10446 3.904824 CGCAGTAAGGATACGAATACGAC 59.095 47.826 0.00 0.00 46.39 4.34
6651 10447 4.319333 CGCAGTAAGGATACGAATACGACT 60.319 45.833 0.00 0.00 46.39 4.18
6652 10448 4.910456 GCAGTAAGGATACGAATACGACTG 59.090 45.833 0.00 0.00 46.39 3.51
6653 10449 5.277683 GCAGTAAGGATACGAATACGACTGA 60.278 44.000 0.00 0.00 46.39 3.41
6654 10450 6.722301 CAGTAAGGATACGAATACGACTGAA 58.278 40.000 0.00 0.00 46.39 3.02
6655 10451 7.191551 CAGTAAGGATACGAATACGACTGAAA 58.808 38.462 0.00 0.00 46.39 2.69
6656 10452 7.861372 CAGTAAGGATACGAATACGACTGAAAT 59.139 37.037 0.00 0.00 46.39 2.17
6657 10453 9.060347 AGTAAGGATACGAATACGACTGAAATA 57.940 33.333 0.00 0.00 46.39 1.40
6658 10454 9.669353 GTAAGGATACGAATACGACTGAAATAA 57.331 33.333 0.00 0.00 46.39 1.40
6660 10456 8.571461 AGGATACGAATACGACTGAAATAAAC 57.429 34.615 0.00 0.00 46.39 2.01
6661 10457 8.411683 AGGATACGAATACGACTGAAATAAACT 58.588 33.333 0.00 0.00 46.39 2.66
6662 10458 9.669353 GGATACGAATACGACTGAAATAAACTA 57.331 33.333 0.00 0.00 42.66 2.24
6706 10502 8.994170 GGAAAGGATCAGAATAAGTACTAATGC 58.006 37.037 0.00 0.00 0.00 3.56
6707 10503 9.771534 GAAAGGATCAGAATAAGTACTAATGCT 57.228 33.333 0.00 0.00 0.00 3.79
6708 10504 9.771534 AAAGGATCAGAATAAGTACTAATGCTC 57.228 33.333 0.00 0.00 0.00 4.26
6709 10505 8.719645 AGGATCAGAATAAGTACTAATGCTCT 57.280 34.615 0.00 0.00 0.00 4.09
6710 10506 8.584157 AGGATCAGAATAAGTACTAATGCTCTG 58.416 37.037 0.00 5.08 0.00 3.35
6711 10507 8.364142 GGATCAGAATAAGTACTAATGCTCTGT 58.636 37.037 14.80 7.26 32.68 3.41
6725 10521 9.780186 ACTAATGCTCTGTATAATACTTTTCCC 57.220 33.333 0.00 0.00 0.00 3.97
6726 10522 9.220767 CTAATGCTCTGTATAATACTTTTCCCC 57.779 37.037 0.00 0.00 0.00 4.81
6727 10523 5.607477 TGCTCTGTATAATACTTTTCCCCG 58.393 41.667 0.00 0.00 0.00 5.73
6728 10524 5.364446 TGCTCTGTATAATACTTTTCCCCGA 59.636 40.000 0.00 0.00 0.00 5.14
6729 10525 5.927115 GCTCTGTATAATACTTTTCCCCGAG 59.073 44.000 0.00 0.00 0.00 4.63
6730 10526 5.850614 TCTGTATAATACTTTTCCCCGAGC 58.149 41.667 0.00 0.00 0.00 5.03
6731 10527 4.624015 TGTATAATACTTTTCCCCGAGCG 58.376 43.478 0.00 0.00 0.00 5.03
6732 10528 4.341806 TGTATAATACTTTTCCCCGAGCGA 59.658 41.667 0.00 0.00 0.00 4.93
6733 10529 4.618920 ATAATACTTTTCCCCGAGCGAT 57.381 40.909 0.00 0.00 0.00 4.58
6734 10530 2.240493 ATACTTTTCCCCGAGCGATG 57.760 50.000 0.00 0.00 0.00 3.84
6735 10531 0.177141 TACTTTTCCCCGAGCGATGG 59.823 55.000 0.00 0.00 0.00 3.51
6736 10532 1.078426 CTTTTCCCCGAGCGATGGT 60.078 57.895 0.00 0.00 0.00 3.55
6737 10533 0.676782 CTTTTCCCCGAGCGATGGTT 60.677 55.000 0.00 0.00 0.00 3.67
6738 10534 0.250989 TTTTCCCCGAGCGATGGTTT 60.251 50.000 0.00 0.00 0.00 3.27
6739 10535 0.614294 TTTCCCCGAGCGATGGTTTA 59.386 50.000 0.00 0.00 0.00 2.01
6740 10536 0.177141 TTCCCCGAGCGATGGTTTAG 59.823 55.000 0.00 0.00 0.00 1.85
6741 10537 1.887707 CCCCGAGCGATGGTTTAGC 60.888 63.158 0.00 0.00 0.00 3.09
6742 10538 2.237751 CCCGAGCGATGGTTTAGCG 61.238 63.158 0.00 0.00 42.06 4.26
6743 10539 2.237751 CCGAGCGATGGTTTAGCGG 61.238 63.158 0.00 0.00 38.92 5.52
6744 10540 1.226859 CGAGCGATGGTTTAGCGGA 60.227 57.895 0.00 0.00 38.92 5.54
6745 10541 0.597637 CGAGCGATGGTTTAGCGGAT 60.598 55.000 0.00 0.00 38.92 4.18
6746 10542 1.583054 GAGCGATGGTTTAGCGGATT 58.417 50.000 0.00 0.00 38.92 3.01
6747 10543 1.527311 GAGCGATGGTTTAGCGGATTC 59.473 52.381 0.00 0.00 38.92 2.52
6748 10544 0.232303 GCGATGGTTTAGCGGATTCG 59.768 55.000 0.00 0.00 38.92 3.34
6749 10545 0.859232 CGATGGTTTAGCGGATTCGG 59.141 55.000 0.00 0.00 33.84 4.30
6750 10546 1.537348 CGATGGTTTAGCGGATTCGGA 60.537 52.381 0.00 0.00 33.84 4.55
6751 10547 2.557317 GATGGTTTAGCGGATTCGGAA 58.443 47.619 0.00 0.00 36.79 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.104102 CCTCCCATTATGCTAACACCCTTA 59.896 45.833 0.00 0.00 0.00 2.69
10 11 2.863809 CCTCCCATTATGCTAACACCC 58.136 52.381 0.00 0.00 0.00 4.61
87 88 6.238266 CCAAGATATTGGATTTTGCATGCAAC 60.238 38.462 31.99 20.51 44.82 4.17
91 92 7.980662 TGTAACCAAGATATTGGATTTTGCATG 59.019 33.333 25.55 0.00 44.82 4.06
93 94 7.178274 ACTGTAACCAAGATATTGGATTTTGCA 59.822 33.333 25.55 16.46 44.82 4.08
124 125 3.334583 TCTTGTGCAACTGGACCTATC 57.665 47.619 0.00 0.00 38.04 2.08
154 155 6.942532 AATGAAAGAATATGGTATGCGTGT 57.057 33.333 0.00 0.00 0.00 4.49
157 158 6.878923 TCCCTAATGAAAGAATATGGTATGCG 59.121 38.462 0.00 0.00 0.00 4.73
176 177 9.653287 CTCGCTATTCATATAAACATTCCCTAA 57.347 33.333 0.00 0.00 0.00 2.69
249 250 5.775701 AGGCACATCCTATCTTTACGAGTAT 59.224 40.000 0.00 0.00 45.41 2.12
259 265 4.103785 ACATTAAGCAGGCACATCCTATCT 59.896 41.667 0.00 0.00 45.52 1.98
441 463 1.604604 GTTACTTGACTGCCTGCCAA 58.395 50.000 0.00 0.00 0.00 4.52
602 638 0.105964 TGGAGAGGGGGAGAATCTCG 60.106 60.000 3.96 0.00 35.32 4.04
620 658 3.861797 CCGACGGGGAAGGGGATG 61.862 72.222 5.81 0.00 38.47 3.51
659 697 0.035630 ATGCTGCTGGAACTCACTCC 60.036 55.000 0.00 0.00 35.88 3.85
752 790 1.336332 CGCCGATCCTAGATCAACAGG 60.336 57.143 5.51 0.00 0.00 4.00
819 863 1.153349 GGGCTTACCTTGAGCGAGG 60.153 63.158 2.12 2.12 41.03 4.63
851 896 6.712547 GGTATCCTGTATCCAATCCAAAGAAG 59.287 42.308 0.00 0.00 0.00 2.85
855 900 4.105697 GGGGTATCCTGTATCCAATCCAAA 59.894 45.833 0.00 0.00 0.00 3.28
869 914 1.536676 CCGCATTTGGGGGTATCCT 59.463 57.895 5.78 0.00 44.34 3.24
893 938 7.068962 TGACAACCCGTTGAGTATGATTAGATA 59.931 37.037 14.29 0.00 42.93 1.98
966 1014 5.448496 GGACATGCATCGCACAGTTAAATTA 60.448 40.000 0.00 0.00 43.04 1.40
967 1015 4.414852 GACATGCATCGCACAGTTAAATT 58.585 39.130 0.00 0.00 43.04 1.82
968 1016 3.181497 GGACATGCATCGCACAGTTAAAT 60.181 43.478 0.00 0.00 43.04 1.40
969 1017 2.161410 GGACATGCATCGCACAGTTAAA 59.839 45.455 0.00 0.00 43.04 1.52
970 1018 1.737236 GGACATGCATCGCACAGTTAA 59.263 47.619 0.00 0.00 43.04 2.01
971 1019 1.338579 TGGACATGCATCGCACAGTTA 60.339 47.619 0.00 0.00 43.04 2.24
972 1020 0.606130 TGGACATGCATCGCACAGTT 60.606 50.000 0.00 0.00 43.04 3.16
980 1028 3.257469 TCTTCTCACTGGACATGCATC 57.743 47.619 0.00 0.00 0.00 3.91
995 1043 0.035056 CCTTTCGCACCCCATCTTCT 60.035 55.000 0.00 0.00 0.00 2.85
996 1044 0.322546 ACCTTTCGCACCCCATCTTC 60.323 55.000 0.00 0.00 0.00 2.87
1038 1086 2.752354 CCGGTCATCCAAATTGCAGTAA 59.248 45.455 0.00 0.00 0.00 2.24
1072 1120 4.996758 ACAGTCATCGACAATGAACATCAA 59.003 37.500 0.96 0.00 45.88 2.57
1143 1191 9.671279 AAACACAAGGAAATGAAAAGAAGATTT 57.329 25.926 0.00 0.00 0.00 2.17
1144 1192 9.317936 GAAACACAAGGAAATGAAAAGAAGATT 57.682 29.630 0.00 0.00 0.00 2.40
1145 1193 8.699130 AGAAACACAAGGAAATGAAAAGAAGAT 58.301 29.630 0.00 0.00 0.00 2.40
1146 1194 8.066612 AGAAACACAAGGAAATGAAAAGAAGA 57.933 30.769 0.00 0.00 0.00 2.87
1147 1195 8.707938 AAGAAACACAAGGAAATGAAAAGAAG 57.292 30.769 0.00 0.00 0.00 2.85
1148 1196 8.531146 AGAAGAAACACAAGGAAATGAAAAGAA 58.469 29.630 0.00 0.00 0.00 2.52
1192 1241 1.492319 CTCCGCGACTCTAGACTCCG 61.492 65.000 8.23 0.00 0.00 4.63
1198 1247 1.353804 GCAGACTCCGCGACTCTAG 59.646 63.158 8.23 0.00 0.00 2.43
1222 1271 4.897509 TCCTATGAACTGGGCATATCTG 57.102 45.455 0.00 0.00 0.00 2.90
1225 1274 4.043812 AGCAATCCTATGAACTGGGCATAT 59.956 41.667 0.00 0.00 0.00 1.78
1226 1275 3.395607 AGCAATCCTATGAACTGGGCATA 59.604 43.478 0.00 0.00 0.00 3.14
1227 1276 2.176364 AGCAATCCTATGAACTGGGCAT 59.824 45.455 0.00 0.00 0.00 4.40
1228 1277 1.565759 AGCAATCCTATGAACTGGGCA 59.434 47.619 0.00 0.00 0.00 5.36
1229 1278 1.952296 CAGCAATCCTATGAACTGGGC 59.048 52.381 0.00 0.00 0.00 5.36
1230 1279 1.952296 GCAGCAATCCTATGAACTGGG 59.048 52.381 0.00 0.00 0.00 4.45
1231 1280 2.928334 AGCAGCAATCCTATGAACTGG 58.072 47.619 0.00 0.00 0.00 4.00
1232 1281 4.197750 AGAAGCAGCAATCCTATGAACTG 58.802 43.478 0.00 0.00 0.00 3.16
1233 1282 4.500499 AGAAGCAGCAATCCTATGAACT 57.500 40.909 0.00 0.00 0.00 3.01
1234 1283 6.297694 CTAAGAAGCAGCAATCCTATGAAC 57.702 41.667 0.00 0.00 0.00 3.18
1279 1328 9.733556 ATAATCTGATAAACCAACACAGTACAA 57.266 29.630 0.00 0.00 0.00 2.41
1280 1329 9.733556 AATAATCTGATAAACCAACACAGTACA 57.266 29.630 0.00 0.00 0.00 2.90
1282 1331 9.391006 GGAATAATCTGATAAACCAACACAGTA 57.609 33.333 0.00 0.00 0.00 2.74
1283 1332 8.109634 AGGAATAATCTGATAAACCAACACAGT 58.890 33.333 0.00 0.00 0.00 3.55
1284 1333 8.511604 AGGAATAATCTGATAAACCAACACAG 57.488 34.615 0.00 0.00 0.00 3.66
1286 1335 8.956426 TGAAGGAATAATCTGATAAACCAACAC 58.044 33.333 0.00 0.00 0.00 3.32
1289 1338 9.699410 ATGTGAAGGAATAATCTGATAAACCAA 57.301 29.630 0.00 0.00 0.00 3.67
1309 1397 9.295825 ACCTGTTATTGAACAATAGAATGTGAA 57.704 29.630 7.21 0.00 44.90 3.18
1326 1414 9.798994 CAAGTAATCGAACTAGTACCTGTTATT 57.201 33.333 0.00 2.84 0.00 1.40
1329 1417 6.071503 AGCAAGTAATCGAACTAGTACCTGTT 60.072 38.462 0.00 1.36 0.00 3.16
1333 1421 6.327934 TCAAGCAAGTAATCGAACTAGTACC 58.672 40.000 0.00 0.00 0.00 3.34
1334 1422 7.488471 ACATCAAGCAAGTAATCGAACTAGTAC 59.512 37.037 0.00 0.00 0.00 2.73
1335 1423 7.544622 ACATCAAGCAAGTAATCGAACTAGTA 58.455 34.615 0.00 0.00 0.00 1.82
1341 1429 5.718649 GCTACATCAAGCAAGTAATCGAA 57.281 39.130 0.00 0.00 42.30 3.71
1445 1548 3.379688 TGTAGCAAGCATGTTTTCACACA 59.620 39.130 0.00 0.00 35.03 3.72
1446 1549 3.963665 TGTAGCAAGCATGTTTTCACAC 58.036 40.909 0.00 0.00 35.03 3.82
1447 1550 4.852134 ATGTAGCAAGCATGTTTTCACA 57.148 36.364 0.00 0.00 37.31 3.58
1448 1551 5.745294 CCATATGTAGCAAGCATGTTTTCAC 59.255 40.000 1.24 0.00 0.00 3.18
1449 1552 5.418524 ACCATATGTAGCAAGCATGTTTTCA 59.581 36.000 1.24 0.00 0.00 2.69
1450 1553 5.894807 ACCATATGTAGCAAGCATGTTTTC 58.105 37.500 1.24 0.00 0.00 2.29
1451 1554 5.920193 ACCATATGTAGCAAGCATGTTTT 57.080 34.783 1.24 0.00 0.00 2.43
1453 1556 5.009010 GCTAACCATATGTAGCAAGCATGTT 59.991 40.000 16.54 6.29 35.76 2.71
1460 1563 5.705441 GCCAATAGCTAACCATATGTAGCAA 59.295 40.000 21.14 0.00 37.97 3.91
1462 1565 5.245531 TGCCAATAGCTAACCATATGTAGC 58.754 41.667 14.54 14.54 44.23 3.58
1501 1643 5.569355 TCCATTTCTCTTTGCATGAAGGTA 58.431 37.500 0.00 0.00 0.00 3.08
1504 1646 5.775686 TGTTCCATTTCTCTTTGCATGAAG 58.224 37.500 0.00 0.00 0.00 3.02
1508 1650 9.729281 ATTAAAATGTTCCATTTCTCTTTGCAT 57.271 25.926 2.92 0.00 0.00 3.96
1597 1739 4.150098 CGAAAAGGTAGAGGAAAGTTGTCG 59.850 45.833 0.00 0.00 0.00 4.35
1819 1990 4.225984 GCAGACATGACGCAACAAATTAA 58.774 39.130 0.00 0.00 0.00 1.40
1890 2061 8.543774 AGAGTATTCCAAATGTACAAGTCTGAT 58.456 33.333 0.00 0.00 0.00 2.90
1921 2092 9.433153 TGCATATCATTAGACAAATTTTTGCAA 57.567 25.926 0.00 0.00 41.79 4.08
1922 2093 8.999220 TGCATATCATTAGACAAATTTTTGCA 57.001 26.923 3.00 0.00 41.79 4.08
1923 2094 9.858247 CATGCATATCATTAGACAAATTTTTGC 57.142 29.630 0.00 0.00 36.00 3.68
1929 2103 9.570468 AGTTCTCATGCATATCATTAGACAAAT 57.430 29.630 0.00 0.00 35.71 2.32
1935 2109 9.107177 GGGAATAGTTCTCATGCATATCATTAG 57.893 37.037 0.00 0.00 31.79 1.73
1960 2134 5.007921 TGTCTCATGCATATGTTTTCGATGG 59.992 40.000 0.00 0.00 35.73 3.51
1961 2135 5.905733 GTGTCTCATGCATATGTTTTCGATG 59.094 40.000 0.00 0.00 35.73 3.84
1962 2136 5.819379 AGTGTCTCATGCATATGTTTTCGAT 59.181 36.000 0.00 0.00 35.73 3.59
1983 2157 7.803189 CGCCAATTTTACTATAAGCCATTAGTG 59.197 37.037 1.46 0.00 0.00 2.74
2059 2234 8.545472 ACCACTTTTACTATGAGCCATTAGTTA 58.455 33.333 0.00 0.00 0.00 2.24
2073 2248 3.403968 TGCATTCGCACCACTTTTACTA 58.596 40.909 0.00 0.00 45.36 1.82
2104 2279 8.100791 TGTACAGAGCATACCAAACTTATTCTT 58.899 33.333 0.00 0.00 0.00 2.52
2105 2280 7.549488 GTGTACAGAGCATACCAAACTTATTCT 59.451 37.037 0.00 0.00 0.00 2.40
2117 2292 4.371855 TGCAGTAGTGTACAGAGCATAC 57.628 45.455 0.00 0.00 31.56 2.39
2141 2316 1.664151 GCGTCATAGTTTACACTGGCC 59.336 52.381 0.00 0.00 34.06 5.36
2198 2373 5.559770 TCTGAAGTATTGCATCACTTGGAA 58.440 37.500 15.87 3.84 40.21 3.53
2290 2467 2.802247 GGTAACACAACCGGTACTGAAC 59.198 50.000 8.00 9.82 0.00 3.18
2293 2508 2.529780 TGGTAACACAACCGGTACTG 57.470 50.000 8.00 6.02 46.17 2.74
2331 2546 9.683069 AACTGATCAAACAAAGAATACAATCAC 57.317 29.630 0.00 0.00 0.00 3.06
2362 2577 2.206576 ACATGGAGTTTCAGCTTCCC 57.793 50.000 0.00 0.00 0.00 3.97
2380 2595 9.909644 CATGTCCCTACAATAATACACTACTAC 57.090 37.037 0.00 0.00 39.58 2.73
2442 2657 9.414295 TGCTACTGATTTTGATTCATGAAAAAG 57.586 29.630 13.09 0.55 0.00 2.27
2461 2676 8.084684 TCTAGTGTTTATGCTATCATGCTACTG 58.915 37.037 0.00 0.00 34.22 2.74
2463 2678 8.867935 CATCTAGTGTTTATGCTATCATGCTAC 58.132 37.037 0.00 0.00 34.22 3.58
2468 2683 6.176183 GGGCATCTAGTGTTTATGCTATCAT 58.824 40.000 11.76 0.00 44.29 2.45
2486 2701 2.777832 ACTTTCAGTCTCTGGGCATC 57.222 50.000 0.00 0.00 31.51 3.91
2493 2708 6.946009 AGCTTAACTCTCTACTTTCAGTCTCT 59.054 38.462 0.00 0.00 0.00 3.10
2498 2713 5.968848 CGCTAGCTTAACTCTCTACTTTCAG 59.031 44.000 13.93 0.00 0.00 3.02
2503 2718 2.619646 GGCGCTAGCTTAACTCTCTACT 59.380 50.000 13.93 0.00 44.37 2.57
2537 2752 7.030165 GTCTTCGATATCTGACTTGAGAACAA 58.970 38.462 0.34 0.00 34.65 2.83
2548 2763 7.082602 GCGTAAATAAGGTCTTCGATATCTGA 58.917 38.462 0.34 0.00 0.00 3.27
2549 2764 6.308282 GGCGTAAATAAGGTCTTCGATATCTG 59.692 42.308 0.34 0.00 0.00 2.90
2557 2772 5.465724 CAGGTATGGCGTAAATAAGGTCTTC 59.534 44.000 0.00 0.00 0.00 2.87
2560 2775 3.497262 GCAGGTATGGCGTAAATAAGGTC 59.503 47.826 0.00 0.00 0.00 3.85
2562 2777 3.740115 AGCAGGTATGGCGTAAATAAGG 58.260 45.455 0.00 0.00 36.08 2.69
2579 2794 5.911280 CAGTTCTTGTGTAAACAATGAGCAG 59.089 40.000 0.00 0.00 0.00 4.24
2635 2865 3.935203 GGACGATCTGCAGAAAGAATCAA 59.065 43.478 22.50 0.00 0.00 2.57
2687 2917 2.416638 CCTGATCTCCCTTGGGATCTT 58.583 52.381 9.08 0.00 39.09 2.40
2706 2936 2.550606 TGACCATTTCGTGTTTGTAGCC 59.449 45.455 0.00 0.00 0.00 3.93
2711 2941 3.691049 ACTGTGACCATTTCGTGTTTG 57.309 42.857 0.00 0.00 0.00 2.93
2776 3006 1.724582 CGAATGTTTCCCATCCCGCC 61.725 60.000 0.00 0.00 31.75 6.13
3013 3252 1.818060 TCAGGATGGTTGGCATTTTCG 59.182 47.619 0.00 0.00 36.16 3.46
3029 3268 2.581354 CTGAGGACGCCCTTCAGG 59.419 66.667 0.00 0.00 44.53 3.86
3402 3716 4.922206 ACTCAAGTAATCCCATTGAAGCA 58.078 39.130 0.00 0.00 32.87 3.91
3434 3748 2.875684 GAAGGACTCGGCGCTGTCTC 62.876 65.000 23.88 11.41 34.01 3.36
3443 3757 1.957877 GGGAGTATCTGAAGGACTCGG 59.042 57.143 10.00 0.00 40.46 4.63
3503 3823 7.325694 ACATCAAGTTTGATTGGAATGGAATC 58.674 34.615 4.66 0.00 45.13 2.52
3685 4008 8.737168 TTGTCCTTATGAATAGATTTGACCTG 57.263 34.615 0.00 0.00 0.00 4.00
3918 4244 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3919 4245 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3920 4246 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
3921 4247 4.529377 AGTAGACACTTATTTTGGGACGGA 59.471 41.667 0.00 0.00 0.00 4.69
3922 4248 4.828829 AGTAGACACTTATTTTGGGACGG 58.171 43.478 0.00 0.00 0.00 4.79
3923 4249 6.534079 CCTTAGTAGACACTTATTTTGGGACG 59.466 42.308 0.00 0.00 36.14 4.79
3924 4250 7.392418 ACCTTAGTAGACACTTATTTTGGGAC 58.608 38.462 0.00 0.00 36.14 4.46
3926 4252 9.729281 TTAACCTTAGTAGACACTTATTTTGGG 57.271 33.333 0.00 0.00 36.14 4.12
3942 4268 8.442374 TCCCAAAATAAGTGTCTTAACCTTAGT 58.558 33.333 0.00 0.00 0.00 2.24
3943 4269 8.727910 GTCCCAAAATAAGTGTCTTAACCTTAG 58.272 37.037 0.00 0.00 0.00 2.18
3946 4272 5.704053 CGTCCCAAAATAAGTGTCTTAACCT 59.296 40.000 0.00 0.00 0.00 3.50
3947 4273 5.106436 CCGTCCCAAAATAAGTGTCTTAACC 60.106 44.000 0.00 0.00 0.00 2.85
3948 4274 5.702209 TCCGTCCCAAAATAAGTGTCTTAAC 59.298 40.000 0.00 0.00 0.00 2.01
3950 4276 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
3951 4277 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
3952 4278 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3953 4279 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3954 4280 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3955 4281 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3956 4282 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3957 4283 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3958 4284 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3959 4285 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3960 4286 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3961 4287 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3962 4288 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3963 4289 2.852714 TAATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
3964 4290 3.339713 AATAATACTCCCTCCGTCCCA 57.660 47.619 0.00 0.00 0.00 4.37
3965 4291 3.244457 CCAAATAATACTCCCTCCGTCCC 60.244 52.174 0.00 0.00 0.00 4.46
3966 4292 3.806157 GCCAAATAATACTCCCTCCGTCC 60.806 52.174 0.00 0.00 0.00 4.79
3967 4293 3.181458 TGCCAAATAATACTCCCTCCGTC 60.181 47.826 0.00 0.00 0.00 4.79
3968 4294 2.775384 TGCCAAATAATACTCCCTCCGT 59.225 45.455 0.00 0.00 0.00 4.69
3969 4295 3.139077 GTGCCAAATAATACTCCCTCCG 58.861 50.000 0.00 0.00 0.00 4.63
3970 4296 4.439253 AGTGCCAAATAATACTCCCTCC 57.561 45.455 0.00 0.00 0.00 4.30
3971 4297 7.054751 AGTAAAGTGCCAAATAATACTCCCTC 58.945 38.462 0.00 0.00 0.00 4.30
3972 4298 6.970191 AGTAAAGTGCCAAATAATACTCCCT 58.030 36.000 0.00 0.00 0.00 4.20
3973 4299 7.338449 TCAAGTAAAGTGCCAAATAATACTCCC 59.662 37.037 0.00 0.00 0.00 4.30
3974 4300 8.276252 TCAAGTAAAGTGCCAAATAATACTCC 57.724 34.615 0.00 0.00 0.00 3.85
3977 4303 8.807581 GCATTCAAGTAAAGTGCCAAATAATAC 58.192 33.333 0.00 0.00 0.00 1.89
4021 4347 8.388656 AGAAAGTCTAGTTACATAATTGGGGA 57.611 34.615 0.00 0.00 0.00 4.81
4107 4433 0.962356 CACATCCCACCTCTTGCCAC 60.962 60.000 0.00 0.00 0.00 5.01
4142 4468 6.918022 CCACTAACAATCCTTTTGACTTCAAC 59.082 38.462 0.00 0.00 35.28 3.18
4143 4469 6.460953 GCCACTAACAATCCTTTTGACTTCAA 60.461 38.462 0.00 0.00 0.00 2.69
4204 4530 6.604396 ACAATTCAAAGATGCAGATATCACCA 59.396 34.615 5.32 1.63 0.00 4.17
4279 4605 5.796502 TTTGGGAGGGTCTATCAAAATCT 57.203 39.130 0.00 0.00 0.00 2.40
4310 4636 0.826715 CACCATCCATCGACACTCCT 59.173 55.000 0.00 0.00 0.00 3.69
4321 4647 5.720041 AGTAGTAGCTTCTTTACACCATCCA 59.280 40.000 0.00 0.00 0.00 3.41
4325 4651 8.645110 AGTTTTAGTAGTAGCTTCTTTACACCA 58.355 33.333 0.00 0.00 0.00 4.17
4500 4826 1.600107 GTCATACCCTCGTTGCCCA 59.400 57.895 0.00 0.00 0.00 5.36
4735 5084 0.670854 GGTCGACCTTCTGCTTCACC 60.671 60.000 27.64 0.00 0.00 4.02
4850 5921 7.873739 ATAAAACATTTGCTTCGAAGGAAAG 57.126 32.000 36.60 30.33 46.91 2.62
4985 6114 0.609131 TCTTGTGGCTTTGGGCTAGC 60.609 55.000 6.04 6.04 41.46 3.42
5479 8259 2.371841 TGCTCTGGTTGGTTACAGACAT 59.628 45.455 0.00 0.00 38.71 3.06
5952 8763 2.808543 CAAACTAGGTCCACTCAACTGC 59.191 50.000 0.00 0.00 0.00 4.40
5990 8801 6.497785 TTTCAACGACTTGAACAAACCTTA 57.502 33.333 1.02 0.00 44.48 2.69
5991 8802 5.379732 TTTCAACGACTTGAACAAACCTT 57.620 34.783 1.02 0.00 44.48 3.50
6012 8823 2.034221 GAAGGGGCCAGCTCGTTT 59.966 61.111 4.39 0.00 0.00 3.60
6085 8941 2.035832 CGACCAAGGAAAATGCAAAGGT 59.964 45.455 0.00 0.00 0.00 3.50
6199 9067 2.094182 TCGAGCAACCTGTAGTCATTCC 60.094 50.000 0.00 0.00 0.00 3.01
6203 9071 0.243907 GCTCGAGCAACCTGTAGTCA 59.756 55.000 31.91 0.00 41.59 3.41
6279 9942 3.402681 CAGGGCCGGATGACACCT 61.403 66.667 5.05 0.00 0.00 4.00
6436 10232 0.317854 GGCAAACACCTCTCAAACGC 60.318 55.000 0.00 0.00 0.00 4.84
6448 10244 1.747325 GCAAAGAGCCCTGGCAAACA 61.747 55.000 11.38 0.00 44.88 2.83
6506 10302 2.972505 AGCACCAACGGTCGCAAG 60.973 61.111 9.28 0.00 34.10 4.01
6528 10324 0.324943 AAATCTCAGACCACACCCCG 59.675 55.000 0.00 0.00 0.00 5.73
6529 10325 1.630878 AGAAATCTCAGACCACACCCC 59.369 52.381 0.00 0.00 0.00 4.95
6541 10337 8.604640 TGATAGCATTGAGAATGAGAAATCTC 57.395 34.615 3.43 3.43 41.46 2.75
6542 10338 9.221933 GATGATAGCATTGAGAATGAGAAATCT 57.778 33.333 0.00 0.00 41.46 2.40
6543 10339 9.000486 TGATGATAGCATTGAGAATGAGAAATC 58.000 33.333 0.00 0.00 41.46 2.17
6544 10340 8.919777 TGATGATAGCATTGAGAATGAGAAAT 57.080 30.769 0.00 0.00 41.46 2.17
6545 10341 8.919777 ATGATGATAGCATTGAGAATGAGAAA 57.080 30.769 0.00 0.00 41.46 2.52
6547 10343 9.601217 CATATGATGATAGCATTGAGAATGAGA 57.399 33.333 0.00 0.00 41.46 3.27
6548 10344 9.384764 ACATATGATGATAGCATTGAGAATGAG 57.615 33.333 10.38 0.00 41.46 2.90
6549 10345 9.379791 GACATATGATGATAGCATTGAGAATGA 57.620 33.333 10.38 0.00 41.46 2.57
6550 10346 9.384764 AGACATATGATGATAGCATTGAGAATG 57.615 33.333 10.38 0.00 41.85 2.67
6551 10347 9.602568 GAGACATATGATGATAGCATTGAGAAT 57.397 33.333 10.38 0.00 34.11 2.40
6552 10348 7.758528 CGAGACATATGATGATAGCATTGAGAA 59.241 37.037 10.38 0.00 34.11 2.87
6553 10349 7.256286 CGAGACATATGATGATAGCATTGAGA 58.744 38.462 10.38 0.00 34.11 3.27
6554 10350 6.476053 CCGAGACATATGATGATAGCATTGAG 59.524 42.308 10.38 0.00 34.11 3.02
6555 10351 6.153340 TCCGAGACATATGATGATAGCATTGA 59.847 38.462 10.38 0.00 34.11 2.57
6556 10352 6.335777 TCCGAGACATATGATGATAGCATTG 58.664 40.000 10.38 0.00 34.11 2.82
6557 10353 6.535963 TCCGAGACATATGATGATAGCATT 57.464 37.500 10.38 0.00 34.11 3.56
6558 10354 6.071165 TGTTCCGAGACATATGATGATAGCAT 60.071 38.462 10.38 0.00 37.47 3.79
6559 10355 5.243730 TGTTCCGAGACATATGATGATAGCA 59.756 40.000 10.38 0.00 0.00 3.49
6560 10356 5.714047 TGTTCCGAGACATATGATGATAGC 58.286 41.667 10.38 0.00 0.00 2.97
6561 10357 9.860898 TTATTGTTCCGAGACATATGATGATAG 57.139 33.333 10.38 0.00 0.00 2.08
6563 10359 9.559732 TTTTATTGTTCCGAGACATATGATGAT 57.440 29.630 10.38 0.00 0.00 2.45
6564 10360 8.956533 TTTTATTGTTCCGAGACATATGATGA 57.043 30.769 10.38 0.00 0.00 2.92
6570 10366 9.321562 GGTTCTATTTTATTGTTCCGAGACATA 57.678 33.333 0.00 0.00 0.00 2.29
6571 10367 8.047310 AGGTTCTATTTTATTGTTCCGAGACAT 58.953 33.333 0.00 0.00 0.00 3.06
6572 10368 7.333423 CAGGTTCTATTTTATTGTTCCGAGACA 59.667 37.037 0.00 0.00 0.00 3.41
6573 10369 7.333672 ACAGGTTCTATTTTATTGTTCCGAGAC 59.666 37.037 0.00 0.00 0.00 3.36
6574 10370 7.391620 ACAGGTTCTATTTTATTGTTCCGAGA 58.608 34.615 0.00 0.00 0.00 4.04
6575 10371 7.611213 ACAGGTTCTATTTTATTGTTCCGAG 57.389 36.000 0.00 0.00 0.00 4.63
6603 10399 9.830294 CGGTTTAGTAAGGGTAACAAATAAAAG 57.170 33.333 0.00 0.00 39.74 2.27
6604 10400 8.296000 GCGGTTTAGTAAGGGTAACAAATAAAA 58.704 33.333 0.00 0.00 39.74 1.52
6605 10401 7.446625 TGCGGTTTAGTAAGGGTAACAAATAAA 59.553 33.333 0.00 0.00 39.74 1.40
6606 10402 6.939163 TGCGGTTTAGTAAGGGTAACAAATAA 59.061 34.615 0.00 0.00 39.74 1.40
6607 10403 6.471146 TGCGGTTTAGTAAGGGTAACAAATA 58.529 36.000 0.00 0.00 39.74 1.40
6608 10404 5.315348 TGCGGTTTAGTAAGGGTAACAAAT 58.685 37.500 0.00 0.00 39.74 2.32
6609 10405 4.712476 TGCGGTTTAGTAAGGGTAACAAA 58.288 39.130 0.00 0.00 39.74 2.83
6610 10406 4.202346 ACTGCGGTTTAGTAAGGGTAACAA 60.202 41.667 0.00 0.00 39.74 2.83
6611 10407 3.324556 ACTGCGGTTTAGTAAGGGTAACA 59.675 43.478 0.00 0.00 39.74 2.41
6612 10408 3.930336 ACTGCGGTTTAGTAAGGGTAAC 58.070 45.455 0.00 0.00 0.00 2.50
6613 10409 5.736951 TTACTGCGGTTTAGTAAGGGTAA 57.263 39.130 1.99 0.00 36.12 2.85
6619 10415 5.356751 TCGTATCCTTACTGCGGTTTAGTAA 59.643 40.000 1.99 0.00 38.06 2.24
6620 10416 4.881273 TCGTATCCTTACTGCGGTTTAGTA 59.119 41.667 1.99 0.00 0.00 1.82
6621 10417 3.696051 TCGTATCCTTACTGCGGTTTAGT 59.304 43.478 1.99 0.00 0.00 2.24
6622 10418 4.297299 TCGTATCCTTACTGCGGTTTAG 57.703 45.455 1.99 1.68 0.00 1.85
6623 10419 4.717233 TTCGTATCCTTACTGCGGTTTA 57.283 40.909 1.99 0.00 0.00 2.01
6624 10420 3.598019 TTCGTATCCTTACTGCGGTTT 57.402 42.857 1.99 0.00 0.00 3.27
6625 10421 3.814005 ATTCGTATCCTTACTGCGGTT 57.186 42.857 1.99 0.00 0.00 4.44
6626 10422 3.304257 CGTATTCGTATCCTTACTGCGGT 60.304 47.826 2.42 2.42 0.00 5.68
6627 10423 3.058708 TCGTATTCGTATCCTTACTGCGG 60.059 47.826 0.00 0.00 38.33 5.69
6628 10424 3.904824 GTCGTATTCGTATCCTTACTGCG 59.095 47.826 0.00 0.00 38.33 5.18
6629 10425 4.910456 CAGTCGTATTCGTATCCTTACTGC 59.090 45.833 0.00 0.00 38.33 4.40
6630 10426 6.296365 TCAGTCGTATTCGTATCCTTACTG 57.704 41.667 0.00 0.00 38.33 2.74
6631 10427 6.932356 TTCAGTCGTATTCGTATCCTTACT 57.068 37.500 0.00 0.00 38.33 2.24
6632 10428 9.669353 TTATTTCAGTCGTATTCGTATCCTTAC 57.331 33.333 0.00 0.00 38.33 2.34
6634 10430 9.028185 GTTTATTTCAGTCGTATTCGTATCCTT 57.972 33.333 0.00 0.00 38.33 3.36
6635 10431 8.411683 AGTTTATTTCAGTCGTATTCGTATCCT 58.588 33.333 0.00 0.00 38.33 3.24
6636 10432 8.571461 AGTTTATTTCAGTCGTATTCGTATCC 57.429 34.615 0.00 0.00 38.33 2.59
6680 10476 8.994170 GCATTAGTACTTATTCTGATCCTTTCC 58.006 37.037 0.00 0.00 0.00 3.13
6681 10477 9.771534 AGCATTAGTACTTATTCTGATCCTTTC 57.228 33.333 0.00 0.00 0.00 2.62
6682 10478 9.771534 GAGCATTAGTACTTATTCTGATCCTTT 57.228 33.333 0.00 0.00 0.00 3.11
6683 10479 9.153479 AGAGCATTAGTACTTATTCTGATCCTT 57.847 33.333 0.00 0.00 0.00 3.36
6684 10480 8.584157 CAGAGCATTAGTACTTATTCTGATCCT 58.416 37.037 14.35 0.00 34.27 3.24
6685 10481 8.364142 ACAGAGCATTAGTACTTATTCTGATCC 58.636 37.037 21.77 1.86 35.84 3.36
6699 10495 9.780186 GGGAAAAGTATTATACAGAGCATTAGT 57.220 33.333 5.11 0.00 0.00 2.24
6700 10496 9.220767 GGGGAAAAGTATTATACAGAGCATTAG 57.779 37.037 5.11 0.00 0.00 1.73
6701 10497 7.876068 CGGGGAAAAGTATTATACAGAGCATTA 59.124 37.037 5.11 0.00 0.00 1.90
6702 10498 6.710744 CGGGGAAAAGTATTATACAGAGCATT 59.289 38.462 5.11 0.00 0.00 3.56
6703 10499 6.042781 TCGGGGAAAAGTATTATACAGAGCAT 59.957 38.462 5.11 0.00 0.00 3.79
6704 10500 5.364446 TCGGGGAAAAGTATTATACAGAGCA 59.636 40.000 5.11 0.00 0.00 4.26
6705 10501 5.850614 TCGGGGAAAAGTATTATACAGAGC 58.149 41.667 5.11 0.00 0.00 4.09
6706 10502 5.927115 GCTCGGGGAAAAGTATTATACAGAG 59.073 44.000 5.11 0.00 0.00 3.35
6707 10503 5.508489 CGCTCGGGGAAAAGTATTATACAGA 60.508 44.000 5.11 0.00 0.00 3.41
6708 10504 4.684703 CGCTCGGGGAAAAGTATTATACAG 59.315 45.833 5.11 0.00 0.00 2.74
6709 10505 4.341806 TCGCTCGGGGAAAAGTATTATACA 59.658 41.667 5.11 0.00 0.00 2.29
6710 10506 4.874970 TCGCTCGGGGAAAAGTATTATAC 58.125 43.478 0.00 0.00 0.00 1.47
6711 10507 5.475719 CATCGCTCGGGGAAAAGTATTATA 58.524 41.667 0.00 0.00 0.00 0.98
6712 10508 4.315803 CATCGCTCGGGGAAAAGTATTAT 58.684 43.478 0.00 0.00 0.00 1.28
6713 10509 3.493699 CCATCGCTCGGGGAAAAGTATTA 60.494 47.826 0.00 0.00 0.00 0.98
6714 10510 2.561569 CATCGCTCGGGGAAAAGTATT 58.438 47.619 0.00 0.00 0.00 1.89
6715 10511 1.202651 CCATCGCTCGGGGAAAAGTAT 60.203 52.381 0.00 0.00 0.00 2.12
6716 10512 0.177141 CCATCGCTCGGGGAAAAGTA 59.823 55.000 0.00 0.00 0.00 2.24
6717 10513 1.078426 CCATCGCTCGGGGAAAAGT 60.078 57.895 0.00 0.00 0.00 2.66
6718 10514 0.676782 AACCATCGCTCGGGGAAAAG 60.677 55.000 7.65 0.00 0.00 2.27
6719 10515 0.250989 AAACCATCGCTCGGGGAAAA 60.251 50.000 7.65 0.00 0.00 2.29
6720 10516 0.614294 TAAACCATCGCTCGGGGAAA 59.386 50.000 7.65 0.00 0.00 3.13
6721 10517 0.177141 CTAAACCATCGCTCGGGGAA 59.823 55.000 7.65 0.00 0.00 3.97
6722 10518 1.820581 CTAAACCATCGCTCGGGGA 59.179 57.895 7.65 0.00 0.00 4.81
6723 10519 1.887707 GCTAAACCATCGCTCGGGG 60.888 63.158 0.00 0.00 0.00 5.73
6724 10520 2.237751 CGCTAAACCATCGCTCGGG 61.238 63.158 0.00 0.00 0.00 5.14
6725 10521 2.237751 CCGCTAAACCATCGCTCGG 61.238 63.158 0.00 0.00 0.00 4.63
6726 10522 0.597637 ATCCGCTAAACCATCGCTCG 60.598 55.000 0.00 0.00 0.00 5.03
6727 10523 1.527311 GAATCCGCTAAACCATCGCTC 59.473 52.381 0.00 0.00 0.00 5.03
6728 10524 1.583054 GAATCCGCTAAACCATCGCT 58.417 50.000 0.00 0.00 0.00 4.93
6729 10525 0.232303 CGAATCCGCTAAACCATCGC 59.768 55.000 0.00 0.00 0.00 4.58
6730 10526 0.859232 CCGAATCCGCTAAACCATCG 59.141 55.000 0.00 0.00 0.00 3.84
6731 10527 2.234300 TCCGAATCCGCTAAACCATC 57.766 50.000 0.00 0.00 0.00 3.51
6732 10528 2.702592 TTCCGAATCCGCTAAACCAT 57.297 45.000 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.