Multiple sequence alignment - TraesCS4A01G241700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G241700 chr4A 100.000 9969 0 0 1 9969 551773796 551763828 0.000000e+00 18410.0
1 TraesCS4A01G241700 chr4A 100.000 100 0 0 1075 1174 551772629 551772530 1.710000e-42 185.0
2 TraesCS4A01G241700 chr4A 100.000 100 0 0 1168 1267 551772722 551772623 1.710000e-42 185.0
3 TraesCS4A01G241700 chr4A 80.000 115 13 6 2444 2552 484356871 484356761 1.070000e-09 76.8
4 TraesCS4A01G241700 chr4A 89.655 58 5 1 954 1011 551772793 551772737 1.390000e-08 73.1
5 TraesCS4A01G241700 chr4A 89.655 58 5 1 1004 1060 551772843 551772786 1.390000e-08 73.1
6 TraesCS4A01G241700 chr4A 100.000 32 0 0 4357 4388 409024332 409024363 1.080000e-04 60.2
7 TraesCS4A01G241700 chr4D 96.068 2925 86 16 5940 8845 46728513 46731427 0.000000e+00 4737.0
8 TraesCS4A01G241700 chr4D 94.804 1886 64 15 3172 5033 46719876 46721751 0.000000e+00 2909.0
9 TraesCS4A01G241700 chr4D 92.896 1999 56 20 1168 3155 46717967 46719890 0.000000e+00 2826.0
10 TraesCS4A01G241700 chr4D 96.740 1135 20 11 8849 9969 46731729 46732860 0.000000e+00 1875.0
11 TraesCS4A01G241700 chr4D 93.929 1186 36 10 1 1174 46716905 46718066 0.000000e+00 1759.0
12 TraesCS4A01G241700 chr4D 89.655 609 40 7 5340 5947 46724781 46725367 0.000000e+00 754.0
13 TraesCS4A01G241700 chr4D 86.063 287 10 7 5029 5293 46722965 46723243 2.120000e-71 281.0
14 TraesCS4A01G241700 chr4D 89.655 58 5 1 1004 1060 46717846 46717903 1.390000e-08 73.1
15 TraesCS4A01G241700 chr4D 89.655 58 5 1 954 1011 46717896 46717952 1.390000e-08 73.1
16 TraesCS4A01G241700 chrUn 94.271 192 6 3 2226 2414 395661151 395661340 1.270000e-73 289.0
17 TraesCS4A01G241700 chrUn 94.271 192 6 3 2226 2414 436154875 436155064 1.270000e-73 289.0
18 TraesCS4A01G241700 chrUn 93.750 192 7 3 2226 2414 189404759 189404948 5.890000e-72 283.0
19 TraesCS4A01G241700 chr7B 94.271 192 6 3 2226 2414 644461120 644461309 1.270000e-73 289.0
20 TraesCS4A01G241700 chr6B 94.271 192 6 3 2226 2414 307002303 307002114 1.270000e-73 289.0
21 TraesCS4A01G241700 chr6B 100.000 28 0 0 4048 4075 633845739 633845712 1.800000e-02 52.8
22 TraesCS4A01G241700 chr2B 94.271 192 6 3 2226 2414 391119154 391118965 1.270000e-73 289.0
23 TraesCS4A01G241700 chr2B 93.750 192 9 2 2226 2414 357261621 357261812 1.640000e-72 285.0
24 TraesCS4A01G241700 chr1B 94.271 192 6 3 2226 2414 638706989 638706800 1.270000e-73 289.0
25 TraesCS4A01G241700 chr1B 80.645 217 26 6 3 206 615024052 615024265 4.820000e-33 154.0
26 TraesCS4A01G241700 chr1B 87.500 48 3 2 4063 4107 640071139 640071092 1.800000e-02 52.8
27 TraesCS4A01G241700 chr4B 93.007 143 10 0 316 458 68654332 68654474 1.010000e-49 209.0
28 TraesCS4A01G241700 chr4B 83.886 211 22 7 1 201 172519479 172519687 3.680000e-44 191.0
29 TraesCS4A01G241700 chr4B 81.281 203 25 4 3 194 610764866 610765066 1.730000e-32 152.0
30 TraesCS4A01G241700 chr4B 86.842 114 15 0 3042 3155 68656057 68656170 2.920000e-25 128.0
31 TraesCS4A01G241700 chr4B 91.304 92 7 1 315 405 68654147 68654238 3.780000e-24 124.0
32 TraesCS4A01G241700 chr4B 82.301 113 17 1 3042 3154 68512453 68512562 2.960000e-15 95.3
33 TraesCS4A01G241700 chr2D 83.732 209 21 8 1 198 613055478 613055684 1.710000e-42 185.0
34 TraesCS4A01G241700 chr2D 88.235 51 4 2 4048 4097 187113574 187113623 1.080000e-04 60.2
35 TraesCS4A01G241700 chr3B 83.575 207 18 7 1 196 665225677 665225878 7.960000e-41 180.0
36 TraesCS4A01G241700 chr3B 79.558 181 23 5 3 173 813612446 813612270 6.330000e-22 117.0
37 TraesCS4A01G241700 chr3B 87.000 100 11 1 74 173 813501419 813501322 2.940000e-20 111.0
38 TraesCS4A01G241700 chr1A 82.692 208 27 5 3 201 86610263 86610470 1.030000e-39 176.0
39 TraesCS4A01G241700 chr5D 82.927 205 22 7 4 196 367755956 367756159 1.330000e-38 172.0
40 TraesCS4A01G241700 chr5D 81.517 211 26 9 1 201 393562284 393562077 2.880000e-35 161.0
41 TraesCS4A01G241700 chr1D 90.244 123 11 1 74 195 16701084 16701206 1.040000e-34 159.0
42 TraesCS4A01G241700 chr1D 96.875 32 0 1 4048 4079 414875789 414875819 1.800000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G241700 chr4A 551763828 551773796 9968 True 3785.240000 18410 95.862000 1 9969 5 chr4A.!!$R2 9968
1 TraesCS4A01G241700 chr4D 46716905 46732860 15955 False 1698.577778 4737 92.162778 1 9969 9 chr4D.!!$F1 9968

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
415 426 0.033208 CTTTTGCCATGGCCTAGGGA 60.033 55.0 33.44 11.50 41.09 4.20 F
1210 1223 0.034089 GATGGGGAAGGGTGTTCCAG 60.034 60.0 6.15 0.00 40.32 3.86 F
1220 1233 0.036388 GGTGTTCCAGATGCGGAGAA 60.036 55.0 0.00 0.00 36.12 2.87 F
2114 2128 0.039527 GTTTGACGCATGGGGTGTTC 60.040 55.0 14.94 3.03 41.19 3.18 F
2161 2175 0.833287 CACCACCTCCCGATCTGATT 59.167 55.0 0.00 0.00 0.00 2.57 F
2585 2603 0.866061 CTCGCGTCACGTGGATAAGG 60.866 60.0 17.00 2.89 44.19 2.69 F
4411 4448 0.469917 ATTCTGTGTATCGCCCCCTG 59.530 55.0 0.00 0.00 0.00 4.45 F
5046 6312 0.035439 CGGATGTGGGCTGGTTAAGT 60.035 55.0 0.00 0.00 0.00 2.24 F
6251 12205 0.036294 GCTTGACCTACACACCCCTC 60.036 60.0 0.00 0.00 0.00 4.30 F
6433 12389 0.393077 ACCGACACTCAGGAACCAAG 59.607 55.0 0.00 0.00 0.00 3.61 F
8131 14095 0.038166 GGCAGACACTCCCCATTGAA 59.962 55.0 0.00 0.00 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2095 2109 0.039527 GAACACCCCATGCGTCAAAC 60.040 55.000 0.00 0.0 0.00 2.93 R
2580 2598 0.179009 ATCATGTGCCGCTGCCTTAT 60.179 50.000 0.00 0.0 36.33 1.73 R
2590 2608 0.396139 ACCATGGGTGATCATGTGCC 60.396 55.000 18.09 0.0 42.02 5.01 R
3684 3708 1.201414 GTGTTTTGTTGCTATCCCCCG 59.799 52.381 0.00 0.0 0.00 5.73 R
3717 3741 4.440829 GAGCCGGCCCAATCCCAA 62.441 66.667 26.15 0.0 0.00 4.12 R
4544 4581 0.319555 CCCGACAGAAGCAGAAACGA 60.320 55.000 0.00 0.0 0.00 3.85 R
5675 8472 0.392595 GGTAAAAGAGGCGGGTCTGG 60.393 60.000 0.00 0.0 0.00 3.86 R
6813 12772 0.108585 GACCAAGTCCAAGCACAGGA 59.891 55.000 0.00 0.0 0.00 3.86 R
8131 14095 0.846693 AGGGTCCAAACACTGAGCTT 59.153 50.000 0.00 0.0 37.89 3.74 R
8200 14164 1.003349 GGCTCATATGCTCCATCTGCT 59.997 52.381 0.00 0.0 0.00 4.24 R
9061 15329 0.740149 TTAGGCAAAGGCATGATGCG 59.260 50.000 11.75 0.0 46.21 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.357947 GGCGCAGTGGTCGTGAGA 62.358 66.667 10.83 0.00 38.16 3.27
55 56 3.031916 TCGTGAGACTTCTTCGGGT 57.968 52.632 5.42 0.00 33.31 5.28
114 125 3.363341 TTCATTTCTTTTGGGCGTGTC 57.637 42.857 0.00 0.00 0.00 3.67
118 129 2.623878 TTCTTTTGGGCGTGTCTGTA 57.376 45.000 0.00 0.00 0.00 2.74
131 142 0.108756 GTCTGTACTGCTTCCGTCCC 60.109 60.000 0.00 0.00 0.00 4.46
133 144 0.320374 CTGTACTGCTTCCGTCCCAA 59.680 55.000 0.00 0.00 0.00 4.12
134 145 0.034337 TGTACTGCTTCCGTCCCAAC 59.966 55.000 0.00 0.00 0.00 3.77
142 153 1.553248 CTTCCGTCCCAACACCTATCA 59.447 52.381 0.00 0.00 0.00 2.15
146 157 2.288666 CGTCCCAACACCTATCATTGG 58.711 52.381 0.00 0.00 42.21 3.16
155 166 4.703897 ACACCTATCATTGGTTGTATCGG 58.296 43.478 0.00 0.00 35.28 4.18
186 197 5.758924 CTTTGTAATATAAAGCGGGGAAGC 58.241 41.667 0.00 0.00 37.41 3.86
206 217 2.799978 GCCCTTTTTCGGAAAACATGTG 59.200 45.455 15.06 4.68 31.72 3.21
207 218 3.491792 GCCCTTTTTCGGAAAACATGTGA 60.492 43.478 15.06 0.00 31.72 3.58
208 219 4.688021 CCCTTTTTCGGAAAACATGTGAA 58.312 39.130 15.06 0.00 31.72 3.18
209 220 4.506288 CCCTTTTTCGGAAAACATGTGAAC 59.494 41.667 15.06 0.00 31.72 3.18
210 221 5.348164 CCTTTTTCGGAAAACATGTGAACT 58.652 37.500 15.06 0.00 31.72 3.01
211 222 5.458779 CCTTTTTCGGAAAACATGTGAACTC 59.541 40.000 15.06 0.00 31.72 3.01
212 223 4.561735 TTTCGGAAAACATGTGAACTCC 57.438 40.909 0.00 2.42 0.00 3.85
213 224 2.500229 TCGGAAAACATGTGAACTCCC 58.500 47.619 0.00 0.00 0.00 4.30
214 225 1.539827 CGGAAAACATGTGAACTCCCC 59.460 52.381 0.00 0.00 0.00 4.81
215 226 2.814097 CGGAAAACATGTGAACTCCCCT 60.814 50.000 0.00 0.00 0.00 4.79
221 232 1.815003 CATGTGAACTCCCCTCAAAGC 59.185 52.381 0.00 0.00 0.00 3.51
279 290 4.049186 CTCGGTCTTTTTCTTGACGAGAA 58.951 43.478 0.59 0.59 42.56 2.87
285 296 4.101119 TCTTTTTCTTGACGAGAAGGACCT 59.899 41.667 5.29 0.00 44.80 3.85
334 345 9.712305 TTTATGTTTTTCTTTTGTTGTTCAGGA 57.288 25.926 0.00 0.00 0.00 3.86
388 399 1.559682 TGACTACTGGAGGCCCATTTC 59.440 52.381 0.00 0.00 42.59 2.17
404 415 0.818445 TTTCGCCGTACCTTTTGCCA 60.818 50.000 0.00 0.00 0.00 4.92
405 416 0.606944 TTCGCCGTACCTTTTGCCAT 60.607 50.000 0.00 0.00 0.00 4.40
407 418 1.510844 GCCGTACCTTTTGCCATGG 59.489 57.895 7.63 7.63 0.00 3.66
409 420 1.510844 CGTACCTTTTGCCATGGCC 59.489 57.895 33.44 16.23 41.09 5.36
410 421 0.965363 CGTACCTTTTGCCATGGCCT 60.965 55.000 33.44 11.26 41.09 5.19
411 422 1.680555 CGTACCTTTTGCCATGGCCTA 60.681 52.381 33.44 18.99 41.09 3.93
412 423 2.024414 GTACCTTTTGCCATGGCCTAG 58.976 52.381 33.44 24.62 41.09 3.02
413 424 0.324645 ACCTTTTGCCATGGCCTAGG 60.325 55.000 31.74 31.74 41.09 3.02
415 426 0.033208 CTTTTGCCATGGCCTAGGGA 60.033 55.000 33.44 11.50 41.09 4.20
416 427 0.324275 TTTTGCCATGGCCTAGGGAC 60.324 55.000 33.44 4.41 41.09 4.46
417 428 2.550699 TTTGCCATGGCCTAGGGACG 62.551 60.000 33.44 0.00 41.09 4.79
418 429 4.256180 GCCATGGCCTAGGGACGG 62.256 72.222 27.24 1.50 29.56 4.79
419 430 4.256180 CCATGGCCTAGGGACGGC 62.256 72.222 11.72 0.00 46.83 5.68
434 445 2.954611 GGCCCGCTTGAACTTCAC 59.045 61.111 0.00 0.00 0.00 3.18
530 542 4.002982 CACAGGCAGCAACTATAACAGAA 58.997 43.478 0.00 0.00 0.00 3.02
531 543 4.637534 CACAGGCAGCAACTATAACAGAAT 59.362 41.667 0.00 0.00 0.00 2.40
576 588 0.390124 AAACTCCGTGGTACGCTTGA 59.610 50.000 0.00 0.00 40.91 3.02
582 594 1.533731 CCGTGGTACGCTTGAAATTGT 59.466 47.619 0.00 0.00 40.91 2.71
593 605 3.666374 GCTTGAAATTGTGCACTCGAGAG 60.666 47.826 21.68 13.24 0.00 3.20
617 629 9.783256 GAGCTCTCTCTACTTACTAAAAGAAAG 57.217 37.037 6.43 0.00 36.42 2.62
1142 1155 0.459411 GAGAAGGCCGAGCTCAACTC 60.459 60.000 15.40 8.47 42.47 3.01
1143 1156 0.902516 AGAAGGCCGAGCTCAACTCT 60.903 55.000 15.40 4.86 43.85 3.24
1144 1157 0.739112 GAAGGCCGAGCTCAACTCTG 60.739 60.000 15.40 0.00 43.85 3.35
1145 1158 1.476007 AAGGCCGAGCTCAACTCTGT 61.476 55.000 15.40 0.00 43.85 3.41
1146 1159 1.446966 GGCCGAGCTCAACTCTGTC 60.447 63.158 15.40 0.00 43.85 3.51
1147 1160 1.290324 GCCGAGCTCAACTCTGTCA 59.710 57.895 15.40 0.00 43.85 3.58
1148 1161 0.319900 GCCGAGCTCAACTCTGTCAA 60.320 55.000 15.40 0.00 43.85 3.18
1149 1162 1.873903 GCCGAGCTCAACTCTGTCAAA 60.874 52.381 15.40 0.00 43.85 2.69
1150 1163 2.064762 CCGAGCTCAACTCTGTCAAAG 58.935 52.381 15.40 0.00 43.85 2.77
1151 1164 2.288457 CCGAGCTCAACTCTGTCAAAGA 60.288 50.000 15.40 0.00 43.85 2.52
1152 1165 2.728839 CGAGCTCAACTCTGTCAAAGAC 59.271 50.000 15.40 0.00 43.85 3.01
1153 1166 3.063485 GAGCTCAACTCTGTCAAAGACC 58.937 50.000 9.40 0.00 42.62 3.85
1154 1167 2.435805 AGCTCAACTCTGTCAAAGACCA 59.564 45.455 0.00 0.00 0.00 4.02
1155 1168 2.545946 GCTCAACTCTGTCAAAGACCAC 59.454 50.000 0.00 0.00 0.00 4.16
1156 1169 3.134458 CTCAACTCTGTCAAAGACCACC 58.866 50.000 0.00 0.00 0.00 4.61
1157 1170 2.503765 TCAACTCTGTCAAAGACCACCA 59.496 45.455 0.00 0.00 0.00 4.17
1158 1171 2.614057 CAACTCTGTCAAAGACCACCAC 59.386 50.000 0.00 0.00 0.00 4.16
1159 1172 1.202533 ACTCTGTCAAAGACCACCACG 60.203 52.381 0.00 0.00 0.00 4.94
1160 1173 0.531974 TCTGTCAAAGACCACCACGC 60.532 55.000 0.00 0.00 0.00 5.34
1161 1174 1.507141 CTGTCAAAGACCACCACGCC 61.507 60.000 0.00 0.00 0.00 5.68
1162 1175 2.280524 TCAAAGACCACCACGCCG 60.281 61.111 0.00 0.00 0.00 6.46
1163 1176 4.025401 CAAAGACCACCACGCCGC 62.025 66.667 0.00 0.00 0.00 6.53
1184 1197 4.821589 GGTCGCCAAGCTCCGGAG 62.822 72.222 27.83 27.83 0.00 4.63
1194 1207 2.587194 CTCCGGAGCCGCAAGATG 60.587 66.667 20.67 0.00 43.02 2.90
1195 1208 4.161295 TCCGGAGCCGCAAGATGG 62.161 66.667 0.00 0.00 43.02 3.51
1203 1216 2.677228 CGCAAGATGGGGAAGGGT 59.323 61.111 0.00 0.00 43.02 4.34
1204 1217 1.750399 CGCAAGATGGGGAAGGGTG 60.750 63.158 0.00 0.00 43.02 4.61
1205 1218 1.384191 GCAAGATGGGGAAGGGTGT 59.616 57.895 0.00 0.00 0.00 4.16
1206 1219 0.251787 GCAAGATGGGGAAGGGTGTT 60.252 55.000 0.00 0.00 0.00 3.32
1207 1220 1.839424 CAAGATGGGGAAGGGTGTTC 58.161 55.000 0.00 0.00 0.00 3.18
1208 1221 0.704664 AAGATGGGGAAGGGTGTTCC 59.295 55.000 0.00 0.00 37.86 3.62
1209 1222 0.477597 AGATGGGGAAGGGTGTTCCA 60.478 55.000 6.15 0.00 40.32 3.53
1210 1223 0.034089 GATGGGGAAGGGTGTTCCAG 60.034 60.000 6.15 0.00 40.32 3.86
1211 1224 0.477597 ATGGGGAAGGGTGTTCCAGA 60.478 55.000 6.15 0.00 40.32 3.86
1212 1225 0.477597 TGGGGAAGGGTGTTCCAGAT 60.478 55.000 6.15 0.00 40.32 2.90
1213 1226 0.034089 GGGGAAGGGTGTTCCAGATG 60.034 60.000 6.15 0.00 40.32 2.90
1214 1227 0.681243 GGGAAGGGTGTTCCAGATGC 60.681 60.000 6.15 0.00 40.32 3.91
1215 1228 1.026718 GGAAGGGTGTTCCAGATGCG 61.027 60.000 0.00 0.00 38.45 4.73
1216 1229 1.002134 AAGGGTGTTCCAGATGCGG 60.002 57.895 0.00 0.00 38.24 5.69
1217 1230 1.488705 AAGGGTGTTCCAGATGCGGA 61.489 55.000 0.00 0.00 38.24 5.54
1218 1231 1.450312 GGGTGTTCCAGATGCGGAG 60.450 63.158 0.00 0.00 36.12 4.63
1219 1232 1.596934 GGTGTTCCAGATGCGGAGA 59.403 57.895 0.00 0.00 36.12 3.71
1220 1233 0.036388 GGTGTTCCAGATGCGGAGAA 60.036 55.000 0.00 0.00 36.12 2.87
1221 1234 1.363744 GTGTTCCAGATGCGGAGAAG 58.636 55.000 0.00 0.00 36.12 2.85
1222 1235 0.250234 TGTTCCAGATGCGGAGAAGG 59.750 55.000 0.00 0.00 36.12 3.46
1223 1236 1.092345 GTTCCAGATGCGGAGAAGGC 61.092 60.000 0.00 0.00 36.12 4.35
1224 1237 2.203126 CCAGATGCGGAGAAGGCC 60.203 66.667 0.00 0.00 0.00 5.19
1232 1245 2.982130 GGAGAAGGCCGAGCTCAA 59.018 61.111 15.40 0.00 0.00 3.02
1233 1246 1.448717 GGAGAAGGCCGAGCTCAAC 60.449 63.158 15.40 4.33 0.00 3.18
1234 1247 1.594310 GAGAAGGCCGAGCTCAACT 59.406 57.895 15.40 5.23 0.00 3.16
1436 1449 0.249447 GCAGTTCTTTGTTGGCCACC 60.249 55.000 3.88 0.00 0.00 4.61
1515 1528 7.336161 TGACCAAGGTCTAAATTTTCGAAAA 57.664 32.000 24.43 24.43 44.80 2.29
1528 1541 8.839947 AAATTTTCGAAAAGGCAAAAATTCTG 57.160 26.923 25.87 0.00 39.25 3.02
1543 1556 3.795688 ATTCTGCTCACCCTCAAAAGA 57.204 42.857 0.00 0.00 0.00 2.52
1546 1559 2.639347 TCTGCTCACCCTCAAAAGATCA 59.361 45.455 0.00 0.00 0.00 2.92
1555 1568 6.326064 TCACCCTCAAAAGATCAAAAATTCCA 59.674 34.615 0.00 0.00 0.00 3.53
1664 1677 6.319658 AGAAATGTAGCACATATTGAACCCAG 59.680 38.462 2.80 0.00 37.97 4.45
1749 1762 7.205297 CCAATCTTGGCTAGGTCATAATTTTG 58.795 38.462 0.00 0.00 42.21 2.44
1818 1832 4.581824 CCATATGATTTGAACCTGGACCTG 59.418 45.833 3.65 0.00 0.00 4.00
1830 1844 1.138859 CTGGACCTGCATATCGGAACA 59.861 52.381 0.00 0.00 0.00 3.18
1842 1856 6.093495 TGCATATCGGAACAAAACTTTCCTAG 59.907 38.462 0.00 0.00 40.51 3.02
1857 1871 0.530744 CCTAGTGCGGCTGTACTGAA 59.469 55.000 24.71 6.32 41.46 3.02
1868 1882 3.320826 GGCTGTACTGAAACCCATGTTTT 59.679 43.478 3.61 0.00 44.57 2.43
1890 1904 5.640189 TTTTTGACGTTTACTGAAACCCA 57.360 34.783 0.00 0.00 41.72 4.51
1891 1905 5.838531 TTTTGACGTTTACTGAAACCCAT 57.161 34.783 0.00 0.00 41.72 4.00
1892 1906 4.822036 TTGACGTTTACTGAAACCCATG 57.178 40.909 0.00 0.00 41.72 3.66
1893 1907 3.811083 TGACGTTTACTGAAACCCATGT 58.189 40.909 0.00 0.00 41.72 3.21
1894 1908 4.200874 TGACGTTTACTGAAACCCATGTT 58.799 39.130 0.00 0.00 41.72 2.71
1895 1909 5.366460 TGACGTTTACTGAAACCCATGTTA 58.634 37.500 0.00 0.00 41.72 2.41
1896 1910 5.821470 TGACGTTTACTGAAACCCATGTTAA 59.179 36.000 0.00 0.00 41.72 2.01
1897 1911 6.487331 TGACGTTTACTGAAACCCATGTTAAT 59.513 34.615 0.00 0.00 41.72 1.40
1898 1912 7.660617 TGACGTTTACTGAAACCCATGTTAATA 59.339 33.333 0.00 0.00 41.72 0.98
1927 1941 6.313905 ACTGATCCATGTTCTTTGTTCGATAC 59.686 38.462 0.00 0.00 0.00 2.24
1945 1959 7.931578 TCGATACAAATTCAAACCAACCTAT 57.068 32.000 0.00 0.00 0.00 2.57
1994 2008 3.392882 CCCAGCCTTGAAATTGTCAAAC 58.607 45.455 0.00 0.00 45.67 2.93
2091 2105 3.187637 GTCTGTTTTGCCTTGCGTACATA 59.812 43.478 0.00 0.00 0.00 2.29
2092 2106 3.815962 TCTGTTTTGCCTTGCGTACATAA 59.184 39.130 0.00 0.00 0.00 1.90
2093 2107 4.276183 TCTGTTTTGCCTTGCGTACATAAA 59.724 37.500 0.00 0.00 0.00 1.40
2095 2109 3.840890 TTTGCCTTGCGTACATAAAGG 57.159 42.857 11.94 11.94 42.86 3.11
2096 2110 2.483014 TGCCTTGCGTACATAAAGGT 57.517 45.000 15.78 0.00 42.13 3.50
2097 2111 2.785562 TGCCTTGCGTACATAAAGGTT 58.214 42.857 15.78 0.00 42.13 3.50
2098 2112 3.150767 TGCCTTGCGTACATAAAGGTTT 58.849 40.909 15.78 0.00 42.13 3.27
2099 2113 3.057876 TGCCTTGCGTACATAAAGGTTTG 60.058 43.478 15.78 0.00 42.13 2.93
2100 2114 3.189702 GCCTTGCGTACATAAAGGTTTGA 59.810 43.478 15.78 0.00 42.13 2.69
2101 2115 4.719040 CCTTGCGTACATAAAGGTTTGAC 58.281 43.478 9.16 0.00 36.50 3.18
2102 2116 4.391358 CTTGCGTACATAAAGGTTTGACG 58.609 43.478 0.00 0.00 0.00 4.35
2103 2117 2.765918 GCGTACATAAAGGTTTGACGC 58.234 47.619 0.44 0.44 45.92 5.19
2105 2119 4.593597 CGTACATAAAGGTTTGACGCAT 57.406 40.909 0.00 0.00 0.00 4.73
2106 2120 4.331137 CGTACATAAAGGTTTGACGCATG 58.669 43.478 0.00 0.00 0.00 4.06
2107 2121 3.848272 ACATAAAGGTTTGACGCATGG 57.152 42.857 0.00 0.00 0.00 3.66
2108 2122 2.491693 ACATAAAGGTTTGACGCATGGG 59.508 45.455 8.44 8.44 0.00 4.00
2109 2123 1.540267 TAAAGGTTTGACGCATGGGG 58.460 50.000 14.94 0.00 0.00 4.96
2110 2124 0.469144 AAAGGTTTGACGCATGGGGT 60.469 50.000 14.94 0.00 0.00 4.95
2111 2125 1.178534 AAGGTTTGACGCATGGGGTG 61.179 55.000 14.94 0.00 0.00 4.61
2112 2126 1.901464 GGTTTGACGCATGGGGTGT 60.901 57.895 14.94 0.00 44.56 4.16
2113 2127 1.460273 GGTTTGACGCATGGGGTGTT 61.460 55.000 14.94 0.00 41.19 3.32
2114 2128 0.039527 GTTTGACGCATGGGGTGTTC 60.040 55.000 14.94 3.03 41.19 3.18
2115 2129 1.175983 TTTGACGCATGGGGTGTTCC 61.176 55.000 14.94 0.00 41.19 3.62
2116 2130 2.063015 TTGACGCATGGGGTGTTCCT 62.063 55.000 14.94 0.00 41.19 3.36
2117 2131 1.303317 GACGCATGGGGTGTTCCTT 60.303 57.895 14.94 0.00 41.19 3.36
2146 2160 5.564063 CGAGTATTAATAGACGATGCCACCA 60.564 44.000 12.84 0.00 0.00 4.17
2161 2175 0.833287 CACCACCTCCCGATCTGATT 59.167 55.000 0.00 0.00 0.00 2.57
2164 2178 3.112263 ACCACCTCCCGATCTGATTTTA 58.888 45.455 0.00 0.00 0.00 1.52
2165 2179 3.521937 ACCACCTCCCGATCTGATTTTAA 59.478 43.478 0.00 0.00 0.00 1.52
2302 2316 6.780031 TCTCTAGAGGAGGTAAATCAATGGAG 59.220 42.308 19.67 0.00 42.10 3.86
2303 2317 5.841237 TCTAGAGGAGGTAAATCAATGGAGG 59.159 44.000 0.00 0.00 0.00 4.30
2304 2318 4.375313 AGAGGAGGTAAATCAATGGAGGT 58.625 43.478 0.00 0.00 0.00 3.85
2305 2319 5.538877 AGAGGAGGTAAATCAATGGAGGTA 58.461 41.667 0.00 0.00 0.00 3.08
2306 2320 5.367060 AGAGGAGGTAAATCAATGGAGGTAC 59.633 44.000 0.00 0.00 0.00 3.34
2307 2321 5.036916 AGGAGGTAAATCAATGGAGGTACA 58.963 41.667 0.00 0.00 0.00 2.90
2368 2386 3.713650 GCCTCTGCTAGTGGGTGA 58.286 61.111 0.00 0.00 29.86 4.02
2382 2400 7.094377 TGCTAGTGGGTGATTTTTCATTTCTAC 60.094 37.037 0.00 0.00 0.00 2.59
2388 2406 6.868339 GGGTGATTTTTCATTTCTACAACAGG 59.132 38.462 0.00 0.00 0.00 4.00
2398 2416 2.846193 TCTACAACAGGTGCTTGGTTC 58.154 47.619 0.00 0.00 0.00 3.62
2433 2451 3.646162 TGACTCAAGCCTCCTCAGTTTTA 59.354 43.478 0.00 0.00 0.00 1.52
2528 2546 2.701423 TCACTGCACCTACCTAACAACA 59.299 45.455 0.00 0.00 0.00 3.33
2580 2598 4.994201 GTGCTCGCGTCACGTGGA 62.994 66.667 17.00 3.75 44.19 4.02
2581 2599 4.050934 TGCTCGCGTCACGTGGAT 62.051 61.111 17.00 0.00 44.19 3.41
2582 2600 2.101575 GCTCGCGTCACGTGGATA 59.898 61.111 17.00 0.00 44.19 2.59
2583 2601 1.515519 GCTCGCGTCACGTGGATAA 60.516 57.895 17.00 0.00 44.19 1.75
2584 2602 1.472276 GCTCGCGTCACGTGGATAAG 61.472 60.000 17.00 8.42 44.19 1.73
2585 2603 0.866061 CTCGCGTCACGTGGATAAGG 60.866 60.000 17.00 2.89 44.19 2.69
2586 2604 2.514013 CGCGTCACGTGGATAAGGC 61.514 63.158 17.00 12.28 36.87 4.35
2587 2605 1.447140 GCGTCACGTGGATAAGGCA 60.447 57.895 17.00 0.00 0.00 4.75
2588 2606 1.421410 GCGTCACGTGGATAAGGCAG 61.421 60.000 17.00 0.00 0.00 4.85
2589 2607 1.421410 CGTCACGTGGATAAGGCAGC 61.421 60.000 17.00 0.00 0.00 5.25
2590 2608 1.153647 TCACGTGGATAAGGCAGCG 60.154 57.895 17.00 0.00 0.00 5.18
2591 2609 2.173669 CACGTGGATAAGGCAGCGG 61.174 63.158 7.95 0.00 0.00 5.52
2592 2610 3.272334 CGTGGATAAGGCAGCGGC 61.272 66.667 0.00 0.00 40.13 6.53
2593 2611 2.124736 GTGGATAAGGCAGCGGCA 60.125 61.111 11.88 0.00 43.71 5.69
2594 2612 2.124736 TGGATAAGGCAGCGGCAC 60.125 61.111 11.88 0.00 43.71 5.01
2595 2613 2.124736 GGATAAGGCAGCGGCACA 60.125 61.111 11.88 0.00 43.71 4.57
2596 2614 1.526917 GGATAAGGCAGCGGCACAT 60.527 57.895 11.88 0.00 43.71 3.21
2597 2615 1.650912 GATAAGGCAGCGGCACATG 59.349 57.895 11.88 0.00 43.71 3.21
2611 2629 1.302366 CACATGATCACCCATGGTCG 58.698 55.000 11.73 0.57 46.06 4.79
2670 2688 4.124351 TGGATGTCGGACGTCGCC 62.124 66.667 20.75 11.60 35.01 5.54
2734 2752 7.099266 ACATCTCTGAACAATTTGACAAACA 57.901 32.000 1.94 0.00 0.00 2.83
2735 2753 7.198390 ACATCTCTGAACAATTTGACAAACAG 58.802 34.615 1.94 6.01 0.00 3.16
2736 2754 6.757897 TCTCTGAACAATTTGACAAACAGT 57.242 33.333 1.94 2.09 0.00 3.55
2737 2755 7.857734 TCTCTGAACAATTTGACAAACAGTA 57.142 32.000 1.94 0.00 0.00 2.74
2738 2756 8.275015 TCTCTGAACAATTTGACAAACAGTAA 57.725 30.769 1.94 0.00 0.00 2.24
2780 2798 3.189080 TGGACAAATCTGTTGCTTCATCG 59.811 43.478 0.00 0.00 35.30 3.84
2781 2799 3.166657 GACAAATCTGTTGCTTCATCGC 58.833 45.455 0.00 0.00 35.30 4.58
2877 2895 2.799978 TCACGCATGTTACTGTTGTCTG 59.200 45.455 0.00 0.00 0.00 3.51
2879 2897 3.059884 ACGCATGTTACTGTTGTCTGAG 58.940 45.455 0.00 0.00 0.00 3.35
2937 2956 9.097257 AGTGAAATGTGGTGTTTCTAATTTTTG 57.903 29.630 0.00 0.00 36.71 2.44
2940 2959 8.432110 AAATGTGGTGTTTCTAATTTTTGTCC 57.568 30.769 0.00 0.00 0.00 4.02
2978 2997 3.881220 AGGTTTCTCAAGTTTGGACGAA 58.119 40.909 0.00 0.00 0.00 3.85
3066 3085 1.016653 GTTCTGAAGCTGGAGCGTCC 61.017 60.000 11.36 0.00 46.52 4.79
3155 3179 5.350640 CACGGGTAAGTTTTCATACTCCTTC 59.649 44.000 0.00 0.00 0.00 3.46
3156 3180 4.874396 CGGGTAAGTTTTCATACTCCTTCC 59.126 45.833 0.00 0.00 0.00 3.46
3157 3181 5.191426 GGGTAAGTTTTCATACTCCTTCCC 58.809 45.833 0.00 0.00 0.00 3.97
3158 3182 5.191426 GGTAAGTTTTCATACTCCTTCCCC 58.809 45.833 0.00 0.00 0.00 4.81
3159 3183 3.629142 AGTTTTCATACTCCTTCCCCG 57.371 47.619 0.00 0.00 0.00 5.73
3160 3184 2.014857 GTTTTCATACTCCTTCCCCGC 58.985 52.381 0.00 0.00 0.00 6.13
3161 3185 1.281419 TTTCATACTCCTTCCCCGCA 58.719 50.000 0.00 0.00 0.00 5.69
3162 3186 1.281419 TTCATACTCCTTCCCCGCAA 58.719 50.000 0.00 0.00 0.00 4.85
3163 3187 1.281419 TCATACTCCTTCCCCGCAAA 58.719 50.000 0.00 0.00 0.00 3.68
3164 3188 1.631388 TCATACTCCTTCCCCGCAAAA 59.369 47.619 0.00 0.00 0.00 2.44
3165 3189 2.040545 TCATACTCCTTCCCCGCAAAAA 59.959 45.455 0.00 0.00 0.00 1.94
3195 3219 8.418662 AGGTTTTCATACTCCTTTTTGGTTTAC 58.581 33.333 0.00 0.00 37.07 2.01
3247 3271 4.246458 CCTTGCAACAGAACTACCTAGTC 58.754 47.826 0.00 0.00 34.99 2.59
3314 3338 7.333174 TGAACGATGATGTGCAACTATTCTAAA 59.667 33.333 0.00 0.00 38.04 1.85
3315 3339 7.239166 ACGATGATGTGCAACTATTCTAAAG 57.761 36.000 0.00 0.00 38.04 1.85
3394 3418 1.268999 TGCACCGCATCAAGAAACAAC 60.269 47.619 0.00 0.00 31.71 3.32
3411 3435 7.450074 AGAAACAACAGTATTGGAGACATGTA 58.550 34.615 0.00 0.00 42.32 2.29
3560 3584 8.427012 CGACATCACAAAATTAAATTGGAGTTG 58.573 33.333 8.64 8.06 32.02 3.16
3606 3630 7.875041 ACATCTAATATCTCATCCCTCAAAACG 59.125 37.037 0.00 0.00 0.00 3.60
3612 3636 5.160607 TCTCATCCCTCAAAACGTACAAT 57.839 39.130 0.00 0.00 0.00 2.71
3613 3637 4.935205 TCTCATCCCTCAAAACGTACAATG 59.065 41.667 0.00 0.00 0.00 2.82
3635 3659 4.047822 GTGTGCTGAGCTAGTCATATGTC 58.952 47.826 5.83 0.00 33.51 3.06
3667 3691 4.478206 TCTCATTGACCTCAATCAGTCC 57.522 45.455 0.00 0.00 44.10 3.85
3717 3741 2.937959 AAAACACGCACCCACCCCAT 62.938 55.000 0.00 0.00 0.00 4.00
3762 3786 5.591877 AGTCTGTTTCTGCATTTTTCAGTCT 59.408 36.000 0.00 0.00 33.48 3.24
3803 3827 9.734620 CCTTTTTCAATTTTTCTTTCCATTTCC 57.265 29.630 0.00 0.00 0.00 3.13
3804 3828 9.734620 CTTTTTCAATTTTTCTTTCCATTTCCC 57.265 29.630 0.00 0.00 0.00 3.97
3904 3928 6.201806 CCGCAACCTATTTTCAAATTTGTGAA 59.798 34.615 17.47 13.20 35.72 3.18
3983 4009 3.332761 TGTTGAGTCGAATGCACAAAC 57.667 42.857 0.00 0.00 0.00 2.93
3984 4010 2.942376 TGTTGAGTCGAATGCACAAACT 59.058 40.909 0.00 0.00 0.00 2.66
4118 4146 4.836125 AGAACATTGTGCTGAAATCGTT 57.164 36.364 0.00 0.00 0.00 3.85
4122 4150 5.878332 ACATTGTGCTGAAATCGTTGATA 57.122 34.783 0.00 0.00 0.00 2.15
4281 4318 1.001641 CAGCTCTTGAGGTTGGGGG 60.002 63.158 0.00 0.00 0.00 5.40
4282 4319 1.464198 AGCTCTTGAGGTTGGGGGT 60.464 57.895 0.00 0.00 0.00 4.95
4321 4358 1.520787 GCACCATAGGAACCGTCGG 60.521 63.158 10.48 10.48 0.00 4.79
4322 4359 1.520787 CACCATAGGAACCGTCGGC 60.521 63.158 12.28 0.00 0.00 5.54
4387 4424 1.719063 TTGGATGGATAGGCTGGGGC 61.719 60.000 0.00 0.00 37.82 5.80
4394 4431 1.076044 ATAGGCTGGGGCGCAAATT 60.076 52.632 10.83 0.00 39.81 1.82
4411 4448 0.469917 ATTCTGTGTATCGCCCCCTG 59.530 55.000 0.00 0.00 0.00 4.45
4424 4461 1.146263 CCCCTGGTCCATTAGTCGC 59.854 63.158 0.00 0.00 0.00 5.19
4729 4767 9.671279 TCTCTGAAAATAATAGTTCTGCATGAA 57.329 29.630 0.00 0.00 0.00 2.57
4913 4960 7.649306 CAGAAACCTACCAGATTTGAAAAACAG 59.351 37.037 0.00 0.00 0.00 3.16
4916 4963 6.365520 ACCTACCAGATTTGAAAAACAGACT 58.634 36.000 0.00 0.00 0.00 3.24
4961 5009 1.534595 CAGCCTGTTTCTCTGAGCAAC 59.465 52.381 12.37 12.37 0.00 4.17
4968 5016 0.387367 TTCTCTGAGCAACGACGAGC 60.387 55.000 0.00 5.30 0.00 5.03
5005 5053 4.778415 CGGAGCGACGTGGGTCAG 62.778 72.222 27.14 21.01 43.61 3.51
5014 5062 2.836154 GTGGGTCAGTGGCTGGAA 59.164 61.111 0.00 0.00 31.51 3.53
5026 5074 2.262915 CTGGAAGCGAGGCGAAGT 59.737 61.111 0.00 0.00 0.00 3.01
5027 5075 1.807573 CTGGAAGCGAGGCGAAGTC 60.808 63.158 0.00 0.00 0.00 3.01
5036 6302 2.511600 GGCGAAGTCGGATGTGGG 60.512 66.667 2.47 0.00 40.23 4.61
5046 6312 0.035439 CGGATGTGGGCTGGTTAAGT 60.035 55.000 0.00 0.00 0.00 2.24
5049 6315 2.231235 GGATGTGGGCTGGTTAAGTTTG 59.769 50.000 0.00 0.00 0.00 2.93
5055 6321 4.569162 GTGGGCTGGTTAAGTTTGTTTTTC 59.431 41.667 0.00 0.00 0.00 2.29
5078 6344 2.439507 TCTTGAGAGAACTGGGCTTGTT 59.560 45.455 0.00 0.00 0.00 2.83
5089 6355 1.305930 GGGCTTGTTAAGTCGCTGGG 61.306 60.000 0.00 0.00 32.70 4.45
5161 6427 4.028825 ACGAAAGGTAGTTATGGGCTAGT 58.971 43.478 0.00 0.00 0.00 2.57
5162 6428 4.468868 ACGAAAGGTAGTTATGGGCTAGTT 59.531 41.667 0.00 0.00 0.00 2.24
5163 6429 5.658190 ACGAAAGGTAGTTATGGGCTAGTTA 59.342 40.000 0.00 0.00 0.00 2.24
5164 6430 6.325804 ACGAAAGGTAGTTATGGGCTAGTTAT 59.674 38.462 0.00 0.00 0.00 1.89
5165 6431 6.645415 CGAAAGGTAGTTATGGGCTAGTTATG 59.355 42.308 0.00 0.00 0.00 1.90
5166 6432 7.447510 AAAGGTAGTTATGGGCTAGTTATGT 57.552 36.000 0.00 0.00 0.00 2.29
5167 6433 7.447510 AAGGTAGTTATGGGCTAGTTATGTT 57.552 36.000 0.00 0.00 0.00 2.71
5284 6570 9.330063 TCTATACTATTGCCTCAAAAATGTCTG 57.670 33.333 0.00 0.00 0.00 3.51
5285 6571 7.944729 ATACTATTGCCTCAAAAATGTCTGT 57.055 32.000 0.00 0.00 0.00 3.41
5287 6573 7.145932 ACTATTGCCTCAAAAATGTCTGTAC 57.854 36.000 0.00 0.00 0.00 2.90
5288 6574 6.942576 ACTATTGCCTCAAAAATGTCTGTACT 59.057 34.615 0.00 0.00 0.00 2.73
5289 6575 8.100791 ACTATTGCCTCAAAAATGTCTGTACTA 58.899 33.333 0.00 0.00 0.00 1.82
5290 6576 7.759489 ATTGCCTCAAAAATGTCTGTACTAA 57.241 32.000 0.00 0.00 0.00 2.24
5291 6577 7.575414 TTGCCTCAAAAATGTCTGTACTAAA 57.425 32.000 0.00 0.00 0.00 1.85
5292 6578 7.759489 TGCCTCAAAAATGTCTGTACTAAAT 57.241 32.000 0.00 0.00 0.00 1.40
5293 6579 8.856153 TGCCTCAAAAATGTCTGTACTAAATA 57.144 30.769 0.00 0.00 0.00 1.40
5294 6580 9.290988 TGCCTCAAAAATGTCTGTACTAAATAA 57.709 29.630 0.00 0.00 0.00 1.40
5448 8245 7.992180 AACTCTGCAAAATAAACAAACTCTG 57.008 32.000 0.00 0.00 0.00 3.35
5449 8246 5.979517 ACTCTGCAAAATAAACAAACTCTGC 59.020 36.000 0.00 0.00 0.00 4.26
5450 8247 5.900425 TCTGCAAAATAAACAAACTCTGCA 58.100 33.333 0.00 0.00 37.07 4.41
5451 8248 6.336566 TCTGCAAAATAAACAAACTCTGCAA 58.663 32.000 0.00 0.00 38.03 4.08
5492 8289 2.287915 GCCATATTTGACTCGCGTGATT 59.712 45.455 16.04 0.00 0.00 2.57
5516 8313 1.743996 GGAACCCATCACAGAGCTTC 58.256 55.000 0.00 0.00 0.00 3.86
5542 8339 2.651455 TCTCATCGACACGGGAAGTAT 58.349 47.619 0.00 0.00 0.00 2.12
5548 8345 2.092753 TCGACACGGGAAGTATCCTACT 60.093 50.000 0.00 0.00 45.77 2.57
5564 8361 3.007940 TCCTACTGTGGATTGGTTGTGAG 59.992 47.826 0.00 0.00 0.00 3.51
5574 8371 1.954146 GGTTGTGAGACAGCGCGAA 60.954 57.895 12.10 0.00 29.43 4.70
5585 8382 0.041839 CAGCGCGAATTCCTGTATGC 60.042 55.000 12.10 0.00 0.00 3.14
5611 8408 1.734465 CTCTCCCACGCAGAACATTTC 59.266 52.381 0.00 0.00 0.00 2.17
5686 8483 2.197324 TTTTTGCCAGACCCGCCT 59.803 55.556 0.00 0.00 0.00 5.52
5687 8484 1.901464 TTTTTGCCAGACCCGCCTC 60.901 57.895 0.00 0.00 0.00 4.70
5696 8494 1.077930 GACCCGCCTCTTTTACCCC 60.078 63.158 0.00 0.00 0.00 4.95
5697 8495 2.124860 CCCGCCTCTTTTACCCCG 60.125 66.667 0.00 0.00 0.00 5.73
5700 8498 1.451387 CGCCTCTTTTACCCCGCAT 60.451 57.895 0.00 0.00 0.00 4.73
5702 8500 0.393808 GCCTCTTTTACCCCGCATCA 60.394 55.000 0.00 0.00 0.00 3.07
5711 8509 0.255604 ACCCCGCATCATCAACATCA 59.744 50.000 0.00 0.00 0.00 3.07
5726 8524 1.135373 ACATCAGTACTCGGTTGCTCG 60.135 52.381 0.00 0.00 0.00 5.03
5732 8530 0.454600 TACTCGGTTGCTCGGATCAC 59.545 55.000 0.00 0.00 0.00 3.06
5733 8531 1.251527 ACTCGGTTGCTCGGATCACT 61.252 55.000 0.00 0.00 0.00 3.41
5734 8532 0.526524 CTCGGTTGCTCGGATCACTC 60.527 60.000 0.00 0.00 0.00 3.51
5742 8540 2.202797 CGGATCACTCGTGCCAGG 60.203 66.667 0.00 0.00 0.00 4.45
5743 8541 2.512515 GGATCACTCGTGCCAGGC 60.513 66.667 3.66 3.66 0.00 4.85
5760 8558 3.074999 GCTCTGGAGAGTGCGAGGG 62.075 68.421 5.57 0.00 43.85 4.30
5761 8559 3.071206 TCTGGAGAGTGCGAGGGC 61.071 66.667 0.00 0.00 40.52 5.19
5766 8564 3.596066 GAGAGTGCGAGGGCTGCAA 62.596 63.158 0.50 0.00 45.23 4.08
5816 8614 2.550830 ATGATCTCGGGTATGGCAAC 57.449 50.000 0.00 0.00 0.00 4.17
5823 8621 1.760479 CGGGTATGGCAACGGGGATA 61.760 60.000 0.00 0.00 42.51 2.59
5824 8622 0.475044 GGGTATGGCAACGGGGATAA 59.525 55.000 0.00 0.00 42.51 1.75
5827 8625 2.159382 GTATGGCAACGGGGATAATGG 58.841 52.381 0.00 0.00 42.51 3.16
5884 8682 1.764571 TTAGTGCACCTGAACGGCCT 61.765 55.000 14.63 0.00 35.61 5.19
5930 8728 4.223953 TCGGGTATGCTTTCTTATCCTCT 58.776 43.478 0.00 0.00 0.00 3.69
5935 8733 6.372937 GGGTATGCTTTCTTATCCTCTAATGC 59.627 42.308 0.00 0.00 0.00 3.56
5985 11939 5.012328 CGGGAGCCTCTAATATCATTACC 57.988 47.826 0.00 0.00 0.00 2.85
5986 11940 4.466370 CGGGAGCCTCTAATATCATTACCA 59.534 45.833 0.00 0.00 0.00 3.25
5988 11942 5.338463 GGGAGCCTCTAATATCATTACCACC 60.338 48.000 0.00 0.00 0.00 4.61
5991 11945 4.938226 GCCTCTAATATCATTACCACCTGC 59.062 45.833 0.00 0.00 0.00 4.85
6000 11954 8.901472 ATATCATTACCACCTGCTCTATTCTA 57.099 34.615 0.00 0.00 0.00 2.10
6062 12016 1.808945 AGGTGTACTACTTCGTGGTCG 59.191 52.381 0.00 0.00 38.55 4.79
6080 12034 3.660111 GGGCAACTGACACGTGGC 61.660 66.667 21.57 19.24 32.97 5.01
6082 12036 4.012895 GCAACTGACACGTGGCGG 62.013 66.667 28.83 28.83 34.93 6.13
6140 12094 7.387948 GGGATGTCGTTTATTTCACAGCTATAT 59.612 37.037 0.00 0.00 0.00 0.86
6150 12104 5.708736 TTCACAGCTATATTCCCTTGGAA 57.291 39.130 0.00 0.00 46.39 3.53
6161 12115 1.283029 TCCCTTGGAATCTCTGGCAAG 59.717 52.381 0.00 0.00 0.00 4.01
6170 12124 2.672961 TCTCTGGCAAGGTATTCACG 57.327 50.000 0.00 0.00 0.00 4.35
6173 12127 0.729116 CTGGCAAGGTATTCACGCTG 59.271 55.000 0.00 0.00 0.00 5.18
6209 12163 1.228398 TGGTGGCGGAATTCTTGCA 60.228 52.632 19.81 7.86 0.00 4.08
6212 12166 1.469767 GGTGGCGGAATTCTTGCATTC 60.470 52.381 19.81 11.53 33.04 2.67
6251 12205 0.036294 GCTTGACCTACACACCCCTC 60.036 60.000 0.00 0.00 0.00 4.30
6275 12229 2.728922 CCATCGCCGTAAGTCTTCTAC 58.271 52.381 0.00 0.00 0.00 2.59
6276 12230 2.358267 CCATCGCCGTAAGTCTTCTACT 59.642 50.000 0.00 0.00 41.49 2.57
6279 12233 5.383958 CATCGCCGTAAGTCTTCTACTATC 58.616 45.833 0.00 0.00 37.50 2.08
6280 12234 4.445453 TCGCCGTAAGTCTTCTACTATCA 58.555 43.478 0.00 0.00 37.50 2.15
6282 12236 5.530171 TCGCCGTAAGTCTTCTACTATCATT 59.470 40.000 0.00 0.00 37.50 2.57
6283 12237 6.039047 TCGCCGTAAGTCTTCTACTATCATTT 59.961 38.462 0.00 0.00 37.50 2.32
6284 12238 6.696148 CGCCGTAAGTCTTCTACTATCATTTT 59.304 38.462 0.00 0.00 37.50 1.82
6285 12239 7.859377 CGCCGTAAGTCTTCTACTATCATTTTA 59.141 37.037 0.00 0.00 37.50 1.52
6332 12286 1.535204 CCGCCAAACTTGCCCTGATT 61.535 55.000 0.00 0.00 0.00 2.57
6433 12389 0.393077 ACCGACACTCAGGAACCAAG 59.607 55.000 0.00 0.00 0.00 3.61
6434 12390 0.393077 CCGACACTCAGGAACCAAGT 59.607 55.000 0.00 0.00 0.00 3.16
6435 12391 1.605712 CCGACACTCAGGAACCAAGTC 60.606 57.143 0.00 0.00 0.00 3.01
6482 12440 3.756069 CGAAGGGAACTACTGTAGAACG 58.244 50.000 21.01 10.72 42.68 3.95
6518 12476 4.083749 TCGCCACATTGTACAACACATAAC 60.084 41.667 11.22 0.00 36.90 1.89
6519 12477 4.319839 CGCCACATTGTACAACACATAACA 60.320 41.667 11.22 0.00 36.90 2.41
6576 12535 8.465999 TGTTTGAACAAATGTAAGAACAGACAT 58.534 29.630 3.34 0.00 35.94 3.06
6584 12543 5.456548 TGTAAGAACAGACATCACCGTAA 57.543 39.130 0.00 0.00 0.00 3.18
6595 12554 3.056749 ACATCACCGTAACTTCAGTCTCC 60.057 47.826 0.00 0.00 0.00 3.71
6650 12609 2.829120 TGTGTGTACACCTGCAGCTATA 59.171 45.455 22.91 0.00 45.88 1.31
6753 12712 1.134818 GCATACATGTGGAGACCGTGA 60.135 52.381 9.11 0.00 0.00 4.35
6797 12756 1.949525 ACTATTCATGGAATGCCGCAC 59.050 47.619 0.00 0.00 46.21 5.34
6847 12807 2.754946 TGGTCGATGTAGAAACCCAC 57.245 50.000 0.00 0.00 0.00 4.61
6850 12810 3.008594 TGGTCGATGTAGAAACCCACAAT 59.991 43.478 0.00 0.00 0.00 2.71
7107 13067 5.976458 AGAATCACTGGCTGAAAACAAAAA 58.024 33.333 0.00 0.00 30.60 1.94
7132 13092 1.251251 ATGCAAGAAGGGTTGAGCAC 58.749 50.000 0.00 0.00 34.54 4.40
7358 13318 6.149474 GGAACATTAGAGCTAGCAAAGAAACA 59.851 38.462 18.83 0.00 0.00 2.83
7550 13510 8.924511 TCTATATGGAAAGATTCAAATGACCC 57.075 34.615 0.00 0.00 0.00 4.46
7559 13519 8.611654 AAAGATTCAAATGACCCAAATGAAAG 57.388 30.769 0.00 0.00 34.09 2.62
7611 13571 7.281100 ACTTTAGATGCTGCTACTATTTTCCAC 59.719 37.037 0.00 0.00 0.00 4.02
7616 13576 3.242446 GCTGCTACTATTTTCCACGCTTC 60.242 47.826 0.00 0.00 0.00 3.86
7966 13929 2.284190 GTCCCAGCTAAGACATCTTGC 58.716 52.381 9.79 6.25 37.40 4.01
8045 14009 1.123077 ACTCTGTCTCAAGTGCACCA 58.877 50.000 14.63 1.78 0.00 4.17
8131 14095 0.038166 GGCAGACACTCCCCATTGAA 59.962 55.000 0.00 0.00 0.00 2.69
8137 14101 1.425066 ACACTCCCCATTGAAAGCTCA 59.575 47.619 0.00 0.00 0.00 4.26
8155 14119 0.884704 CAGTGTTTGGACCCTCACCG 60.885 60.000 7.03 0.00 0.00 4.94
8173 14137 5.163513 TCACCGAGTAATTTTACCTTCGTC 58.836 41.667 9.71 0.00 32.65 4.20
8218 14182 5.601583 ATCTAGCAGATGGAGCATATGAG 57.398 43.478 6.97 0.00 35.38 2.90
8229 14193 5.237815 TGGAGCATATGAGCCGTTTATTAG 58.762 41.667 6.97 0.00 34.23 1.73
8230 14194 5.221641 TGGAGCATATGAGCCGTTTATTAGT 60.222 40.000 6.97 0.00 34.23 2.24
8233 14197 4.213270 GCATATGAGCCGTTTATTAGTGCA 59.787 41.667 6.97 0.00 0.00 4.57
8284 14248 3.001838 TGTTAGCTACAACAAGCAACACG 59.998 43.478 0.00 0.00 45.30 4.49
8368 14334 2.144078 TTGCAACCCCTCCGTCTGA 61.144 57.895 0.00 0.00 0.00 3.27
8406 14372 5.211454 GGGAAAATGGCGAAATTTGTTTTG 58.789 37.500 0.00 0.00 30.21 2.44
8539 14509 2.224209 CGTGGAACTAGACTTTGTGGGT 60.224 50.000 0.00 0.00 31.75 4.51
8563 14533 4.021544 GGTGCCAAAATGTTTCTGTATCCA 60.022 41.667 0.00 0.00 0.00 3.41
8617 14587 8.571336 AGAGTCTTCCAACATTGAATTACTTTG 58.429 33.333 0.00 0.00 0.00 2.77
8626 14596 4.404507 TTGAATTACTTTGCTGTCTCGC 57.595 40.909 0.00 0.00 0.00 5.03
8643 14613 2.333926 TCGCAGATGGTTAACTGTTCG 58.666 47.619 5.42 2.92 36.62 3.95
8710 14680 1.204941 CTTAGGAACACGGGGAGACAG 59.795 57.143 0.00 0.00 0.00 3.51
8735 14705 6.489022 GGTCACTTTACTTGGAGGTACAAAAT 59.511 38.462 0.00 0.00 0.00 1.82
8736 14706 7.308408 GGTCACTTTACTTGGAGGTACAAAATC 60.308 40.741 0.00 0.00 0.00 2.17
8740 14710 2.374170 ACTTGGAGGTACAAAATCCCGT 59.626 45.455 0.00 0.00 31.73 5.28
8845 14815 4.598062 CAGATATCGTGCTCGTAGACAAA 58.402 43.478 8.17 0.00 38.33 2.83
8866 15134 6.828273 ACAAAATCCTAGTGCTATACATTGCA 59.172 34.615 0.00 0.00 36.25 4.08
8882 15150 4.518970 ACATTGCAAAATCGACCTACACTT 59.481 37.500 1.71 0.00 0.00 3.16
9061 15329 8.855279 CAAGCGTATAGAATATTCAGAAGCTAC 58.145 37.037 17.56 8.11 0.00 3.58
9074 15342 1.672881 GAAGCTACGCATCATGCCTTT 59.327 47.619 3.38 0.00 41.12 3.11
9384 15663 4.237843 TGCAGATCATATCTCCTTCCCTT 58.762 43.478 0.00 0.00 37.58 3.95
9486 15765 3.944015 GACATAAGATGCTTTGTGGAGCT 59.056 43.478 0.00 0.00 43.11 4.09
9514 15793 2.139917 TGGATTCAACGAACTGTTCCG 58.860 47.619 14.48 11.75 39.29 4.30
9517 15796 1.161563 TTCAACGAACTGTTCCGGCC 61.162 55.000 14.48 0.00 39.29 6.13
9553 15832 5.187772 TGATGGTAGACTTACAGAACTGCAT 59.812 40.000 1.46 0.00 0.00 3.96
9559 15838 8.414778 GGTAGACTTACAGAACTGCATAGTTAT 58.585 37.037 1.46 0.00 46.79 1.89
9716 15995 0.832135 TTCGTCCTCTCCACAGCCTT 60.832 55.000 0.00 0.00 0.00 4.35
9750 16029 1.574925 CGCATCAGCCATCATCAGC 59.425 57.895 0.00 0.00 37.52 4.26
9827 16106 1.375396 CAGCCCACGAATCGTCCAA 60.375 57.895 4.88 0.00 38.32 3.53
9876 16158 4.113906 CACGCAGTATCCATGAGGACCA 62.114 54.545 0.00 0.00 44.79 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.122019 GCCCACCGTAGATCTCCCAT 61.122 60.000 0.00 0.00 0.00 4.00
93 104 3.383185 AGACACGCCCAAAAGAAATGAAA 59.617 39.130 0.00 0.00 0.00 2.69
114 125 0.320374 TTGGGACGGAAGCAGTACAG 59.680 55.000 0.00 0.00 0.00 2.74
118 129 1.227853 GTGTTGGGACGGAAGCAGT 60.228 57.895 0.00 0.00 0.00 4.40
131 142 5.007626 CCGATACAACCAATGATAGGTGTTG 59.992 44.000 0.00 0.00 39.86 3.33
133 144 4.163458 ACCGATACAACCAATGATAGGTGT 59.837 41.667 0.00 0.00 39.86 4.16
134 145 4.703897 ACCGATACAACCAATGATAGGTG 58.296 43.478 0.00 0.00 39.86 4.00
142 153 2.230266 GCAACCAACCGATACAACCAAT 59.770 45.455 0.00 0.00 0.00 3.16
146 157 3.243267 ACAAAGCAACCAACCGATACAAC 60.243 43.478 0.00 0.00 0.00 3.32
183 194 3.133901 ACATGTTTTCCGAAAAAGGGCTT 59.866 39.130 7.88 0.00 35.10 4.35
185 196 2.799978 CACATGTTTTCCGAAAAAGGGC 59.200 45.455 7.88 0.00 35.10 5.19
186 197 4.314740 TCACATGTTTTCCGAAAAAGGG 57.685 40.909 7.88 3.43 35.10 3.95
206 217 2.303311 ACTACAGCTTTGAGGGGAGTTC 59.697 50.000 0.00 0.00 0.00 3.01
207 218 2.039084 CACTACAGCTTTGAGGGGAGTT 59.961 50.000 0.00 0.00 0.00 3.01
208 219 1.625818 CACTACAGCTTTGAGGGGAGT 59.374 52.381 0.00 0.00 0.00 3.85
209 220 1.625818 ACACTACAGCTTTGAGGGGAG 59.374 52.381 0.00 0.00 0.00 4.30
210 221 1.623811 GACACTACAGCTTTGAGGGGA 59.376 52.381 0.00 0.00 0.00 4.81
211 222 1.339151 GGACACTACAGCTTTGAGGGG 60.339 57.143 0.00 0.00 0.00 4.79
212 223 1.347707 TGGACACTACAGCTTTGAGGG 59.652 52.381 0.00 0.00 0.00 4.30
213 224 2.417719 GTGGACACTACAGCTTTGAGG 58.582 52.381 0.00 0.00 0.00 3.86
214 225 2.417719 GGTGGACACTACAGCTTTGAG 58.582 52.381 2.13 0.00 33.78 3.02
215 226 1.071699 GGGTGGACACTACAGCTTTGA 59.928 52.381 2.13 0.00 36.62 2.69
221 232 2.656069 CCGGGGGTGGACACTACAG 61.656 68.421 0.00 0.00 0.00 2.74
334 345 4.261656 CGACCGCTAGATTTCTCCACTTAT 60.262 45.833 0.00 0.00 0.00 1.73
388 399 1.136565 CATGGCAAAAGGTACGGCG 59.863 57.895 4.80 4.80 0.00 6.46
393 404 1.064017 CCTAGGCCATGGCAAAAGGTA 60.064 52.381 36.56 16.36 44.11 3.08
413 424 4.699522 AGTTCAAGCGGGCCGTCC 62.700 66.667 28.82 12.03 0.00 4.79
415 426 2.668550 GAAGTTCAAGCGGGCCGT 60.669 61.111 28.82 11.69 0.00 5.68
416 427 2.668212 TGAAGTTCAAGCGGGCCG 60.668 61.111 24.35 24.35 0.00 6.13
417 428 2.954611 GTGAAGTTCAAGCGGGCC 59.045 61.111 7.25 0.00 0.00 5.80
418 429 2.251642 ACGTGAAGTTCAAGCGGGC 61.252 57.895 17.33 0.00 28.70 6.13
419 430 1.569493 CACGTGAAGTTCAAGCGGG 59.431 57.895 17.33 10.74 28.70 6.13
420 431 1.082756 GCACGTGAAGTTCAAGCGG 60.083 57.895 22.23 11.54 28.70 5.52
421 432 0.235665 ATGCACGTGAAGTTCAAGCG 59.764 50.000 22.23 14.93 28.16 4.68
422 433 1.678360 CATGCACGTGAAGTTCAAGC 58.322 50.000 22.23 16.31 28.16 4.01
423 434 1.002576 TGCATGCACGTGAAGTTCAAG 60.003 47.619 22.23 16.05 28.16 3.02
487 498 4.097589 GTGTAGGCTTACTTCCGACAGTAT 59.902 45.833 7.57 0.00 39.34 2.12
530 542 9.418045 CTTTCGAATGGGTTTTGTTTATGTTAT 57.582 29.630 0.00 0.00 0.00 1.89
531 543 8.630917 TCTTTCGAATGGGTTTTGTTTATGTTA 58.369 29.630 10.78 0.00 0.00 2.41
563 575 2.570169 CACAATTTCAAGCGTACCACG 58.430 47.619 0.00 0.00 45.88 4.94
566 578 2.031157 AGTGCACAATTTCAAGCGTACC 60.031 45.455 21.04 0.00 0.00 3.34
568 580 2.096466 CGAGTGCACAATTTCAAGCGTA 60.096 45.455 21.04 0.00 0.00 4.42
576 588 2.072298 GAGCTCTCGAGTGCACAATTT 58.928 47.619 33.60 17.13 37.04 1.82
582 594 2.476772 GAGAGAGCTCTCGAGTGCA 58.523 57.895 33.60 7.17 45.49 4.57
623 635 9.030301 GCACTAAATGAAAGTTGTTGTTTACAT 57.970 29.630 0.00 0.00 36.44 2.29
877 889 1.750193 GTGTGATGGTGGTGGTATGG 58.250 55.000 0.00 0.00 0.00 2.74
908 920 2.813042 GTGCTCAGCTCAGGCGAC 60.813 66.667 0.00 0.00 44.37 5.19
909 921 2.871253 TTGTGCTCAGCTCAGGCGA 61.871 57.895 0.96 0.00 44.37 5.54
910 922 2.357881 TTGTGCTCAGCTCAGGCG 60.358 61.111 0.96 0.00 44.37 5.52
1053 1066 3.706373 GAGTCCTTGCCGGCCTGA 61.706 66.667 26.77 15.03 0.00 3.86
1142 1155 1.507141 GGCGTGGTGGTCTTTGACAG 61.507 60.000 0.07 0.00 33.68 3.51
1143 1156 1.525077 GGCGTGGTGGTCTTTGACA 60.525 57.895 0.07 0.00 33.68 3.58
1144 1157 2.604174 CGGCGTGGTGGTCTTTGAC 61.604 63.158 0.00 0.00 0.00 3.18
1145 1158 2.280524 CGGCGTGGTGGTCTTTGA 60.281 61.111 0.00 0.00 0.00 2.69
1146 1159 4.025401 GCGGCGTGGTGGTCTTTG 62.025 66.667 9.37 0.00 0.00 2.77
1167 1180 4.821589 CTCCGGAGCTTGGCGACC 62.822 72.222 20.67 0.00 0.00 4.79
1177 1190 2.587194 CATCTTGCGGCTCCGGAG 60.587 66.667 27.83 27.83 41.44 4.63
1178 1191 4.161295 CCATCTTGCGGCTCCGGA 62.161 66.667 2.93 2.93 40.19 5.14
1181 1194 3.344137 TTCCCCATCTTGCGGCTCC 62.344 63.158 0.00 0.00 0.00 4.70
1182 1195 1.821332 CTTCCCCATCTTGCGGCTC 60.821 63.158 0.00 0.00 0.00 4.70
1183 1196 2.273449 CTTCCCCATCTTGCGGCT 59.727 61.111 0.00 0.00 0.00 5.52
1184 1197 2.830370 CCTTCCCCATCTTGCGGC 60.830 66.667 0.00 0.00 0.00 6.53
1185 1198 2.124151 CCCTTCCCCATCTTGCGG 60.124 66.667 0.00 0.00 0.00 5.69
1186 1199 1.750399 CACCCTTCCCCATCTTGCG 60.750 63.158 0.00 0.00 0.00 4.85
1187 1200 0.251787 AACACCCTTCCCCATCTTGC 60.252 55.000 0.00 0.00 0.00 4.01
1188 1201 1.616994 GGAACACCCTTCCCCATCTTG 60.617 57.143 0.00 0.00 32.48 3.02
1189 1202 0.704664 GGAACACCCTTCCCCATCTT 59.295 55.000 0.00 0.00 32.48 2.40
1190 1203 0.477597 TGGAACACCCTTCCCCATCT 60.478 55.000 0.00 0.00 37.79 2.90
1191 1204 0.034089 CTGGAACACCCTTCCCCATC 60.034 60.000 0.00 0.00 37.79 3.51
1192 1205 0.477597 TCTGGAACACCCTTCCCCAT 60.478 55.000 0.00 0.00 37.79 4.00
1193 1206 0.477597 ATCTGGAACACCCTTCCCCA 60.478 55.000 0.00 0.00 37.79 4.96
1194 1207 0.034089 CATCTGGAACACCCTTCCCC 60.034 60.000 0.00 0.00 37.79 4.81
1195 1208 0.681243 GCATCTGGAACACCCTTCCC 60.681 60.000 0.00 0.00 37.79 3.97
1196 1209 1.026718 CGCATCTGGAACACCCTTCC 61.027 60.000 0.00 0.00 39.03 3.46
1197 1210 1.026718 CCGCATCTGGAACACCCTTC 61.027 60.000 0.00 0.00 35.38 3.46
1198 1211 1.002134 CCGCATCTGGAACACCCTT 60.002 57.895 0.00 0.00 35.38 3.95
1199 1212 1.903877 CTCCGCATCTGGAACACCCT 61.904 60.000 0.00 0.00 37.64 4.34
1200 1213 1.450312 CTCCGCATCTGGAACACCC 60.450 63.158 0.00 0.00 37.64 4.61
1201 1214 0.036388 TTCTCCGCATCTGGAACACC 60.036 55.000 0.00 0.00 37.64 4.16
1202 1215 1.363744 CTTCTCCGCATCTGGAACAC 58.636 55.000 0.00 0.00 37.64 3.32
1203 1216 0.250234 CCTTCTCCGCATCTGGAACA 59.750 55.000 0.00 0.00 37.64 3.18
1204 1217 1.092345 GCCTTCTCCGCATCTGGAAC 61.092 60.000 0.00 0.00 37.64 3.62
1205 1218 1.221840 GCCTTCTCCGCATCTGGAA 59.778 57.895 0.00 0.00 37.64 3.53
1206 1219 2.735772 GGCCTTCTCCGCATCTGGA 61.736 63.158 0.00 0.00 36.37 3.86
1207 1220 2.203126 GGCCTTCTCCGCATCTGG 60.203 66.667 0.00 0.00 0.00 3.86
1208 1221 2.587194 CGGCCTTCTCCGCATCTG 60.587 66.667 0.00 0.00 43.18 2.90
1215 1228 1.448717 GTTGAGCTCGGCCTTCTCC 60.449 63.158 9.64 0.00 0.00 3.71
1216 1229 0.459411 GAGTTGAGCTCGGCCTTCTC 60.459 60.000 9.64 4.97 34.13 2.87
1217 1230 1.594310 GAGTTGAGCTCGGCCTTCT 59.406 57.895 9.64 0.80 34.13 2.85
1218 1231 4.193653 GAGTTGAGCTCGGCCTTC 57.806 61.111 9.64 0.00 34.13 3.46
1225 1238 3.063485 GGTCTTTGACAGAGTTGAGCTC 58.937 50.000 6.82 6.82 44.45 4.09
1226 1239 2.435805 TGGTCTTTGACAGAGTTGAGCT 59.564 45.455 0.00 0.00 33.68 4.09
1227 1240 2.545946 GTGGTCTTTGACAGAGTTGAGC 59.454 50.000 0.07 0.00 33.68 4.26
1228 1241 3.134458 GGTGGTCTTTGACAGAGTTGAG 58.866 50.000 0.07 0.00 33.68 3.02
1229 1242 2.503765 TGGTGGTCTTTGACAGAGTTGA 59.496 45.455 0.07 0.00 33.68 3.18
1230 1243 2.614057 GTGGTGGTCTTTGACAGAGTTG 59.386 50.000 0.07 0.00 33.68 3.16
1231 1244 2.741878 CGTGGTGGTCTTTGACAGAGTT 60.742 50.000 0.07 0.00 33.68 3.01
1232 1245 1.202533 CGTGGTGGTCTTTGACAGAGT 60.203 52.381 0.07 0.00 33.68 3.24
1233 1246 1.502231 CGTGGTGGTCTTTGACAGAG 58.498 55.000 0.07 0.00 33.68 3.35
1234 1247 0.531974 GCGTGGTGGTCTTTGACAGA 60.532 55.000 0.07 0.00 33.68 3.41
1275 1288 2.801077 TGACGTCTGGATCTCACCTA 57.199 50.000 17.92 0.00 0.00 3.08
1436 1449 0.747255 ATGGCGACTGTAGGTAGCTG 59.253 55.000 4.27 0.00 44.22 4.24
1515 1528 1.620323 GGGTGAGCAGAATTTTTGCCT 59.380 47.619 8.19 0.00 42.48 4.75
1527 1540 3.507162 TTGATCTTTTGAGGGTGAGCA 57.493 42.857 0.00 0.00 0.00 4.26
1528 1541 4.853924 TTTTGATCTTTTGAGGGTGAGC 57.146 40.909 0.00 0.00 0.00 4.26
1555 1568 7.659652 TGTCCGAAACAAATTTCAAAGTTTT 57.340 28.000 5.99 0.00 43.90 2.43
1664 1677 4.630069 ACCGTCAAGTTTGATATGTACTGC 59.370 41.667 0.00 0.00 39.73 4.40
1702 1715 0.886490 CCTCGGTCAGCTGCTTGTTT 60.886 55.000 9.47 0.00 0.00 2.83
1830 1844 1.880027 CAGCCGCACTAGGAAAGTTTT 59.120 47.619 0.00 0.00 35.76 2.43
1842 1856 1.574702 GGGTTTCAGTACAGCCGCAC 61.575 60.000 0.00 0.00 0.00 5.34
1868 1882 5.640189 TGGGTTTCAGTAAACGTCAAAAA 57.360 34.783 0.00 0.00 44.97 1.94
1871 1885 4.200874 ACATGGGTTTCAGTAAACGTCAA 58.799 39.130 0.00 0.00 44.97 3.18
1872 1886 3.811083 ACATGGGTTTCAGTAAACGTCA 58.189 40.909 0.00 0.00 44.97 4.35
1873 1887 4.823790 AACATGGGTTTCAGTAAACGTC 57.176 40.909 0.00 0.00 44.97 4.34
1874 1888 6.887626 ATTAACATGGGTTTCAGTAAACGT 57.112 33.333 0.00 0.00 44.97 3.99
1875 1889 8.036273 ACTATTAACATGGGTTTCAGTAAACG 57.964 34.615 0.00 0.00 44.97 3.60
1879 1893 9.661563 CAGTTACTATTAACATGGGTTTCAGTA 57.338 33.333 5.85 0.00 40.25 2.74
1880 1894 8.380099 TCAGTTACTATTAACATGGGTTTCAGT 58.620 33.333 5.85 0.00 40.25 3.41
1881 1895 8.786826 TCAGTTACTATTAACATGGGTTTCAG 57.213 34.615 5.85 0.00 40.25 3.02
1882 1896 9.391006 GATCAGTTACTATTAACATGGGTTTCA 57.609 33.333 5.85 0.00 40.25 2.69
1883 1897 8.837389 GGATCAGTTACTATTAACATGGGTTTC 58.163 37.037 5.85 0.00 40.25 2.78
1884 1898 8.333235 TGGATCAGTTACTATTAACATGGGTTT 58.667 33.333 5.85 0.00 40.25 3.27
1885 1899 7.867921 TGGATCAGTTACTATTAACATGGGTT 58.132 34.615 5.85 0.00 40.25 4.11
1886 1900 7.446106 TGGATCAGTTACTATTAACATGGGT 57.554 36.000 5.85 0.00 40.25 4.51
1887 1901 7.939039 ACATGGATCAGTTACTATTAACATGGG 59.061 37.037 15.28 0.00 40.25 4.00
1888 1902 8.908786 ACATGGATCAGTTACTATTAACATGG 57.091 34.615 15.28 0.00 40.25 3.66
1895 1909 9.520515 AACAAAGAACATGGATCAGTTACTATT 57.479 29.630 0.00 0.00 0.00 1.73
1896 1910 9.167311 GAACAAAGAACATGGATCAGTTACTAT 57.833 33.333 0.00 0.00 0.00 2.12
1897 1911 7.330946 CGAACAAAGAACATGGATCAGTTACTA 59.669 37.037 0.00 0.00 0.00 1.82
1898 1912 6.147821 CGAACAAAGAACATGGATCAGTTACT 59.852 38.462 0.00 0.00 0.00 2.24
1967 1981 0.686789 ATTTCAAGGCTGGGCAAACC 59.313 50.000 0.00 0.00 40.81 3.27
1968 1982 2.145536 CAATTTCAAGGCTGGGCAAAC 58.854 47.619 0.00 0.00 0.00 2.93
1969 1983 1.767681 ACAATTTCAAGGCTGGGCAAA 59.232 42.857 0.00 0.00 0.00 3.68
1977 1991 5.234972 CCTGAAAGTTTGACAATTTCAAGGC 59.765 40.000 14.68 0.00 45.22 4.35
1994 2008 3.514645 CATGGGCGAAATTTCCTGAAAG 58.485 45.455 12.54 0.00 33.32 2.62
2071 2085 2.704725 ATGTACGCAAGGCAAAACAG 57.295 45.000 0.00 0.00 46.39 3.16
2091 2105 0.469144 ACCCCATGCGTCAAACCTTT 60.469 50.000 0.00 0.00 0.00 3.11
2092 2106 1.152830 ACCCCATGCGTCAAACCTT 59.847 52.632 0.00 0.00 0.00 3.50
2093 2107 1.603455 CACCCCATGCGTCAAACCT 60.603 57.895 0.00 0.00 0.00 3.50
2095 2109 0.039527 GAACACCCCATGCGTCAAAC 60.040 55.000 0.00 0.00 0.00 2.93
2096 2110 1.175983 GGAACACCCCATGCGTCAAA 61.176 55.000 0.00 0.00 0.00 2.69
2097 2111 1.602323 GGAACACCCCATGCGTCAA 60.602 57.895 0.00 0.00 0.00 3.18
2098 2112 2.033448 GGAACACCCCATGCGTCA 59.967 61.111 0.00 0.00 0.00 4.35
2099 2113 0.893727 AAAGGAACACCCCATGCGTC 60.894 55.000 0.00 0.00 34.66 5.19
2100 2114 0.469144 AAAAGGAACACCCCATGCGT 60.469 50.000 0.00 0.00 34.66 5.24
2101 2115 0.243636 GAAAAGGAACACCCCATGCG 59.756 55.000 0.00 0.00 34.66 4.73
2102 2116 1.000843 GTGAAAAGGAACACCCCATGC 59.999 52.381 0.00 0.00 34.66 4.06
2103 2117 1.269448 CGTGAAAAGGAACACCCCATG 59.731 52.381 0.00 0.00 34.05 3.66
2104 2118 1.144093 TCGTGAAAAGGAACACCCCAT 59.856 47.619 0.00 0.00 34.05 4.00
2105 2119 0.547075 TCGTGAAAAGGAACACCCCA 59.453 50.000 0.00 0.00 34.05 4.96
2106 2120 1.235724 CTCGTGAAAAGGAACACCCC 58.764 55.000 0.00 0.00 34.05 4.95
2107 2121 1.963172 ACTCGTGAAAAGGAACACCC 58.037 50.000 0.00 0.00 34.05 4.61
2108 2122 6.790285 TTAATACTCGTGAAAAGGAACACC 57.210 37.500 0.00 0.00 34.05 4.16
2109 2123 9.362539 TCTATTAATACTCGTGAAAAGGAACAC 57.637 33.333 0.00 0.00 0.00 3.32
2110 2124 9.362539 GTCTATTAATACTCGTGAAAAGGAACA 57.637 33.333 0.00 0.00 0.00 3.18
2111 2125 8.529911 CGTCTATTAATACTCGTGAAAAGGAAC 58.470 37.037 0.00 0.00 0.00 3.62
2112 2126 8.461222 TCGTCTATTAATACTCGTGAAAAGGAA 58.539 33.333 11.64 0.00 0.00 3.36
2113 2127 7.988737 TCGTCTATTAATACTCGTGAAAAGGA 58.011 34.615 11.64 0.00 0.00 3.36
2114 2128 8.691727 CATCGTCTATTAATACTCGTGAAAAGG 58.308 37.037 11.64 0.00 0.00 3.11
2115 2129 8.208560 GCATCGTCTATTAATACTCGTGAAAAG 58.791 37.037 11.64 0.00 0.00 2.27
2116 2130 7.168637 GGCATCGTCTATTAATACTCGTGAAAA 59.831 37.037 11.64 0.00 0.00 2.29
2117 2131 6.639686 GGCATCGTCTATTAATACTCGTGAAA 59.360 38.462 11.64 0.00 0.00 2.69
2146 2160 7.067494 CAGAAATTTAAAATCAGATCGGGAGGT 59.933 37.037 0.00 0.00 0.00 3.85
2302 2316 3.146066 TGTTTCAACCAGCTGATGTACC 58.854 45.455 17.39 1.12 0.00 3.34
2303 2317 3.365364 GCTGTTTCAACCAGCTGATGTAC 60.365 47.826 17.39 15.24 38.77 2.90
2304 2318 2.813754 GCTGTTTCAACCAGCTGATGTA 59.186 45.455 17.39 4.98 38.77 2.29
2305 2319 1.610522 GCTGTTTCAACCAGCTGATGT 59.389 47.619 17.39 1.80 38.77 3.06
2306 2320 1.068055 GGCTGTTTCAACCAGCTGATG 60.068 52.381 17.39 14.05 41.33 3.07
2307 2321 1.251251 GGCTGTTTCAACCAGCTGAT 58.749 50.000 17.39 0.00 41.33 2.90
2368 2386 7.054491 AGCACCTGTTGTAGAAATGAAAAAT 57.946 32.000 0.00 0.00 0.00 1.82
2382 2400 2.957491 TTTGAACCAAGCACCTGTTG 57.043 45.000 0.00 0.00 0.00 3.33
2406 2424 3.445008 TGAGGAGGCTTGAGTCATAAGT 58.555 45.455 0.00 0.00 0.00 2.24
2433 2451 2.716424 TCTCCCCAAGTTGAGTGGAAAT 59.284 45.455 3.87 0.00 38.54 2.17
2478 2496 6.560253 ACACAAGTGACTTGGAAATATGAC 57.440 37.500 27.01 0.00 44.81 3.06
2528 2546 4.737578 GGAAGTTCCCTCCCTTAACTTTT 58.262 43.478 11.17 0.00 42.06 2.27
2550 2568 0.738762 CGAGCACATCAGGTCTGTGG 60.739 60.000 5.67 0.00 43.34 4.17
2579 2597 0.815213 TCATGTGCCGCTGCCTTATC 60.815 55.000 0.00 0.00 36.33 1.75
2580 2598 0.179009 ATCATGTGCCGCTGCCTTAT 60.179 50.000 0.00 0.00 36.33 1.73
2581 2599 0.815213 GATCATGTGCCGCTGCCTTA 60.815 55.000 0.00 0.00 36.33 2.69
2582 2600 2.044650 ATCATGTGCCGCTGCCTT 60.045 55.556 0.00 0.00 36.33 4.35
2583 2601 2.515523 GATCATGTGCCGCTGCCT 60.516 61.111 0.00 0.00 36.33 4.75
2584 2602 2.825387 TGATCATGTGCCGCTGCC 60.825 61.111 0.00 0.00 36.33 4.85
2585 2603 2.406401 GTGATCATGTGCCGCTGC 59.594 61.111 0.00 0.00 38.26 5.25
2586 2604 2.475466 GGGTGATCATGTGCCGCTG 61.475 63.158 0.00 0.00 0.00 5.18
2587 2605 2.124570 GGGTGATCATGTGCCGCT 60.125 61.111 0.00 0.00 0.00 5.52
2588 2606 1.825191 ATGGGTGATCATGTGCCGC 60.825 57.895 0.00 0.00 0.00 6.53
2589 2607 1.449726 CCATGGGTGATCATGTGCCG 61.450 60.000 2.85 0.00 42.02 5.69
2590 2608 0.396139 ACCATGGGTGATCATGTGCC 60.396 55.000 18.09 0.00 42.02 5.01
2591 2609 1.027357 GACCATGGGTGATCATGTGC 58.973 55.000 18.09 0.00 42.02 4.57
2592 2610 1.302366 CGACCATGGGTGATCATGTG 58.698 55.000 18.09 0.00 42.02 3.21
2593 2611 0.464373 GCGACCATGGGTGATCATGT 60.464 55.000 18.09 0.00 42.02 3.21
2594 2612 1.168407 GGCGACCATGGGTGATCATG 61.168 60.000 18.09 0.00 42.92 3.07
2595 2613 1.149174 GGCGACCATGGGTGATCAT 59.851 57.895 18.09 0.00 35.25 2.45
2596 2614 1.846712 TTGGCGACCATGGGTGATCA 61.847 55.000 18.09 4.86 35.25 2.92
2597 2615 1.077787 TTGGCGACCATGGGTGATC 60.078 57.895 18.09 3.08 35.25 2.92
2611 2629 2.359011 CTTAGGGTGGGGGTTGGC 59.641 66.667 0.00 0.00 0.00 4.52
2734 2752 7.256475 CCATTCTAGATTGGCTCCACTATTACT 60.256 40.741 18.28 0.00 0.00 2.24
2735 2753 6.876257 CCATTCTAGATTGGCTCCACTATTAC 59.124 42.308 18.28 0.00 0.00 1.89
2736 2754 6.787458 TCCATTCTAGATTGGCTCCACTATTA 59.213 38.462 23.37 4.97 33.17 0.98
2737 2755 5.608437 TCCATTCTAGATTGGCTCCACTATT 59.392 40.000 23.37 0.00 33.17 1.73
2738 2756 5.012561 GTCCATTCTAGATTGGCTCCACTAT 59.987 44.000 23.37 0.00 33.17 2.12
2780 2798 3.067833 GAGTTTGGGTCAGACTTAGTGC 58.932 50.000 0.00 0.00 28.84 4.40
2781 2799 4.336889 TGAGTTTGGGTCAGACTTAGTG 57.663 45.455 0.00 0.00 28.84 2.74
2919 2937 5.457473 CACGGACAAAAATTAGAAACACCAC 59.543 40.000 0.00 0.00 0.00 4.16
3064 3083 4.641645 CCTGGCAGTGCGTTGGGA 62.642 66.667 14.43 0.00 0.00 4.37
3066 3085 3.052082 CTCCTGGCAGTGCGTTGG 61.052 66.667 14.43 10.89 0.00 3.77
3168 3192 7.432148 AACCAAAAAGGAGTATGAAAACCTT 57.568 32.000 0.00 0.00 43.40 3.50
3169 3193 7.432148 AAACCAAAAAGGAGTATGAAAACCT 57.568 32.000 0.00 0.00 41.22 3.50
3170 3194 8.198778 TGTAAACCAAAAAGGAGTATGAAAACC 58.801 33.333 0.00 0.00 41.22 3.27
3171 3195 9.589111 TTGTAAACCAAAAAGGAGTATGAAAAC 57.411 29.630 0.00 0.00 41.22 2.43
3195 3219 7.133891 AGTCTTATGAACGTCCTGAATTTTG 57.866 36.000 0.00 0.00 0.00 2.44
3247 3271 1.282382 TCGGGAAAGGGAAACTAGGG 58.718 55.000 0.00 0.00 0.00 3.53
3272 3296 3.246699 TCGTTCACTTGCTAAACCTTTCG 59.753 43.478 0.00 0.00 0.00 3.46
3288 3312 5.178061 AGAATAGTTGCACATCATCGTTCA 58.822 37.500 0.00 0.00 0.00 3.18
3394 3418 6.644347 AGAAAGGTACATGTCTCCAATACTG 58.356 40.000 18.21 0.00 0.00 2.74
3513 3537 5.000591 TCGTGGTTCTAAAATGAGCAATCA 58.999 37.500 0.00 0.00 0.00 2.57
3606 3630 3.589988 ACTAGCTCAGCACACATTGTAC 58.410 45.455 0.00 0.00 0.00 2.90
3612 3636 3.448660 ACATATGACTAGCTCAGCACACA 59.551 43.478 10.38 0.00 30.20 3.72
3613 3637 4.047822 GACATATGACTAGCTCAGCACAC 58.952 47.826 10.38 0.00 30.20 3.82
3635 3659 5.215252 AGGTCAATGAGATATGGTTACGG 57.785 43.478 0.00 0.00 0.00 4.02
3684 3708 1.201414 GTGTTTTGTTGCTATCCCCCG 59.799 52.381 0.00 0.00 0.00 5.73
3717 3741 4.440829 GAGCCGGCCCAATCCCAA 62.441 66.667 26.15 0.00 0.00 4.12
3992 4018 8.178964 ACAAATTTGATAAAATGTGCATGCATC 58.821 29.630 25.64 15.63 31.98 3.91
3995 4021 7.519843 TCACAAATTTGATAAAATGTGCATGC 58.480 30.769 24.64 11.82 39.81 4.06
4281 4318 1.452108 CCCCTTTCCCGCATCTCAC 60.452 63.158 0.00 0.00 0.00 3.51
4282 4319 2.679342 CCCCCTTTCCCGCATCTCA 61.679 63.158 0.00 0.00 0.00 3.27
4387 4424 1.268032 GGGCGATACACAGAATTTGCG 60.268 52.381 0.00 0.00 0.00 4.85
4394 4431 2.063979 CCAGGGGGCGATACACAGA 61.064 63.158 0.00 0.00 0.00 3.41
4411 4448 0.933509 CGTAGCGCGACTAATGGACC 60.934 60.000 18.58 0.00 44.77 4.46
4544 4581 0.319555 CCCGACAGAAGCAGAAACGA 60.320 55.000 0.00 0.00 0.00 3.85
4545 4582 0.319555 TCCCGACAGAAGCAGAAACG 60.320 55.000 0.00 0.00 0.00 3.60
4554 4592 7.229707 TGAACAATTTTAGAAATCCCGACAGAA 59.770 33.333 0.00 0.00 0.00 3.02
4608 4646 6.834959 TGCAAAATTCAAAACATAAGCGAA 57.165 29.167 0.00 0.00 0.00 4.70
4667 4705 7.698628 TGTTCATGTATTCAAAAACTGACGAA 58.301 30.769 0.00 0.00 32.21 3.85
4895 4942 7.122055 ACAACAGTCTGTTTTTCAAATCTGGTA 59.878 33.333 15.73 0.00 38.77 3.25
4898 4945 7.028962 TCACAACAGTCTGTTTTTCAAATCTG 58.971 34.615 15.73 4.15 38.77 2.90
4913 4960 7.826260 TTTTTCCTGATTTTTCACAACAGTC 57.174 32.000 0.00 0.00 0.00 3.51
4941 4989 1.534595 GTTGCTCAGAGAAACAGGCTG 59.465 52.381 15.74 14.16 33.83 4.85
4961 5009 0.247301 GCCATTTTTCTCGCTCGTCG 60.247 55.000 0.00 0.00 40.15 5.12
4968 5016 0.958382 TCGGTGGGCCATTTTTCTCG 60.958 55.000 10.70 5.90 34.09 4.04
5001 5049 1.739562 CTCGCTTCCAGCCACTGAC 60.740 63.158 0.00 0.00 38.18 3.51
5002 5050 2.659016 CTCGCTTCCAGCCACTGA 59.341 61.111 0.00 0.00 38.18 3.41
5003 5051 2.435586 CCTCGCTTCCAGCCACTG 60.436 66.667 0.00 0.00 38.18 3.66
5004 5052 4.400961 GCCTCGCTTCCAGCCACT 62.401 66.667 0.00 0.00 38.18 4.00
5014 5062 3.141488 ATCCGACTTCGCCTCGCT 61.141 61.111 0.00 0.00 38.18 4.93
5026 5074 0.251916 CTTAACCAGCCCACATCCGA 59.748 55.000 0.00 0.00 0.00 4.55
5027 5075 0.035439 ACTTAACCAGCCCACATCCG 60.035 55.000 0.00 0.00 0.00 4.18
5036 6302 7.544217 TCAAGAAGAAAAACAAACTTAACCAGC 59.456 33.333 0.00 0.00 0.00 4.85
5046 6312 7.362920 CCCAGTTCTCTCAAGAAGAAAAACAAA 60.363 37.037 0.00 0.00 42.14 2.83
5049 6315 5.506483 GCCCAGTTCTCTCAAGAAGAAAAAC 60.506 44.000 0.00 0.00 42.14 2.43
5055 6321 3.072944 CAAGCCCAGTTCTCTCAAGAAG 58.927 50.000 0.00 0.00 42.14 2.85
5136 6402 5.425196 AGCCCATAACTACCTTTCGTTTA 57.575 39.130 0.00 0.00 0.00 2.01
5141 6407 7.506971 ACATAACTAGCCCATAACTACCTTTC 58.493 38.462 0.00 0.00 0.00 2.62
5161 6427 2.336478 CGCGCCCCCAACAACATAA 61.336 57.895 0.00 0.00 0.00 1.90
5162 6428 2.748251 CGCGCCCCCAACAACATA 60.748 61.111 0.00 0.00 0.00 2.29
5191 6457 2.177594 CTGCACCCAGGTCAGTCCTC 62.178 65.000 7.65 0.00 46.24 3.71
5209 6492 4.835056 CCAGGGTGAGGAAAAAGAAATTCT 59.165 41.667 0.00 0.00 0.00 2.40
5341 6630 9.174166 GCCTAAGTTCCTTTCAGTCAATAATAA 57.826 33.333 0.00 0.00 0.00 1.40
5349 6638 3.601435 GGAGCCTAAGTTCCTTTCAGTC 58.399 50.000 0.00 0.00 40.14 3.51
5350 6639 2.306219 GGGAGCCTAAGTTCCTTTCAGT 59.694 50.000 0.00 0.00 42.78 3.41
5351 6640 2.305927 TGGGAGCCTAAGTTCCTTTCAG 59.694 50.000 0.00 0.00 42.78 3.02
5352 6641 2.344592 TGGGAGCCTAAGTTCCTTTCA 58.655 47.619 0.00 0.00 42.78 2.69
5353 6642 3.082548 GTTGGGAGCCTAAGTTCCTTTC 58.917 50.000 0.00 0.00 42.78 2.62
5367 8164 4.524316 TCATTGCAAATGAAGTTGGGAG 57.476 40.909 1.71 0.00 0.00 4.30
5423 8220 7.010460 GCAGAGTTTGTTTATTTTGCAGAGTTT 59.990 33.333 0.00 0.00 0.00 2.66
5434 8231 9.816354 AAACATAAGTTGCAGAGTTTGTTTATT 57.184 25.926 13.88 0.00 38.17 1.40
5435 8232 9.248291 CAAACATAAGTTGCAGAGTTTGTTTAT 57.752 29.630 14.64 0.00 40.29 1.40
5436 8233 7.704472 CCAAACATAAGTTGCAGAGTTTGTTTA 59.296 33.333 14.64 0.00 42.35 2.01
5437 8234 6.534793 CCAAACATAAGTTGCAGAGTTTGTTT 59.465 34.615 17.84 14.85 42.35 2.83
5438 8235 6.042143 CCAAACATAAGTTGCAGAGTTTGTT 58.958 36.000 17.84 11.25 42.35 2.83
5439 8236 5.359576 TCCAAACATAAGTTGCAGAGTTTGT 59.640 36.000 17.84 7.17 42.35 2.83
5440 8237 5.830912 TCCAAACATAAGTTGCAGAGTTTG 58.169 37.500 14.91 14.91 43.08 2.93
5441 8238 6.655078 ATCCAAACATAAGTTGCAGAGTTT 57.345 33.333 0.00 0.00 38.17 2.66
5442 8239 6.655078 AATCCAAACATAAGTTGCAGAGTT 57.345 33.333 0.00 0.00 38.17 3.01
5443 8240 6.449698 CAAATCCAAACATAAGTTGCAGAGT 58.550 36.000 0.00 0.00 38.17 3.24
5444 8241 5.346822 GCAAATCCAAACATAAGTTGCAGAG 59.653 40.000 2.34 0.00 41.96 3.35
5445 8242 5.221402 TGCAAATCCAAACATAAGTTGCAGA 60.221 36.000 5.47 0.00 45.55 4.26
5446 8243 4.989797 TGCAAATCCAAACATAAGTTGCAG 59.010 37.500 5.47 0.00 45.55 4.41
5448 8245 4.389687 CCTGCAAATCCAAACATAAGTTGC 59.610 41.667 0.00 0.00 42.51 4.17
5449 8246 4.389687 GCCTGCAAATCCAAACATAAGTTG 59.610 41.667 0.00 0.00 38.17 3.16
5450 8247 4.563374 GGCCTGCAAATCCAAACATAAGTT 60.563 41.667 0.00 0.00 40.40 2.66
5451 8248 3.055891 GGCCTGCAAATCCAAACATAAGT 60.056 43.478 0.00 0.00 0.00 2.24
5492 8289 1.630369 CTCTGTGATGGGTTCCCAAGA 59.370 52.381 14.91 11.44 39.80 3.02
5505 8302 0.952280 AGAACGTCGAAGCTCTGTGA 59.048 50.000 3.39 0.00 0.00 3.58
5542 8339 2.976185 TCACAACCAATCCACAGTAGGA 59.024 45.455 0.00 0.00 43.01 2.94
5548 8345 2.849942 CTGTCTCACAACCAATCCACA 58.150 47.619 0.00 0.00 0.00 4.17
5564 8361 1.258982 CATACAGGAATTCGCGCTGTC 59.741 52.381 17.64 6.86 0.00 3.51
5574 8371 3.073650 GGAGAGAATGGGCATACAGGAAT 59.926 47.826 0.00 0.00 0.00 3.01
5585 8382 1.153289 CTGCGTGGGAGAGAATGGG 60.153 63.158 0.00 0.00 0.00 4.00
5671 8468 2.351924 AAAGAGGCGGGTCTGGCAAA 62.352 55.000 6.14 0.00 36.77 3.68
5674 8471 1.025113 GTAAAAGAGGCGGGTCTGGC 61.025 60.000 0.00 0.00 0.00 4.85
5675 8472 0.392595 GGTAAAAGAGGCGGGTCTGG 60.393 60.000 0.00 0.00 0.00 3.86
5676 8473 0.392595 GGGTAAAAGAGGCGGGTCTG 60.393 60.000 0.00 0.00 0.00 3.51
5677 8474 1.559965 GGGGTAAAAGAGGCGGGTCT 61.560 60.000 0.00 0.00 0.00 3.85
5678 8475 1.077930 GGGGTAAAAGAGGCGGGTC 60.078 63.158 0.00 0.00 0.00 4.46
5679 8476 2.963101 CGGGGTAAAAGAGGCGGGT 61.963 63.158 0.00 0.00 0.00 5.28
5680 8477 2.124860 CGGGGTAAAAGAGGCGGG 60.125 66.667 0.00 0.00 0.00 6.13
5682 8479 1.436983 GATGCGGGGTAAAAGAGGCG 61.437 60.000 0.00 0.00 0.00 5.52
5683 8480 0.393808 TGATGCGGGGTAAAAGAGGC 60.394 55.000 0.00 0.00 0.00 4.70
5684 8481 2.222027 GATGATGCGGGGTAAAAGAGG 58.778 52.381 0.00 0.00 0.00 3.69
5685 8482 2.917933 TGATGATGCGGGGTAAAAGAG 58.082 47.619 0.00 0.00 0.00 2.85
5686 8483 3.013921 GTTGATGATGCGGGGTAAAAGA 58.986 45.455 0.00 0.00 0.00 2.52
5687 8484 2.752354 TGTTGATGATGCGGGGTAAAAG 59.248 45.455 0.00 0.00 0.00 2.27
5696 8494 3.181178 CGAGTACTGATGTTGATGATGCG 59.819 47.826 0.00 0.00 0.00 4.73
5697 8495 3.492383 CCGAGTACTGATGTTGATGATGC 59.508 47.826 0.00 0.00 0.00 3.91
5700 8498 4.494484 CAACCGAGTACTGATGTTGATGA 58.506 43.478 17.60 0.00 38.81 2.92
5702 8500 3.055819 AGCAACCGAGTACTGATGTTGAT 60.056 43.478 23.04 17.65 38.81 2.57
5711 8509 0.739561 GATCCGAGCAACCGAGTACT 59.260 55.000 0.00 0.00 0.00 2.73
5726 8524 2.512515 GCCTGGCACGAGTGATCC 60.513 66.667 15.17 0.29 0.00 3.36
5742 8540 2.493973 CCTCGCACTCTCCAGAGC 59.506 66.667 3.33 0.00 45.79 4.09
5752 8550 2.980233 ACTTTGCAGCCCTCGCAC 60.980 61.111 0.00 0.00 39.59 5.34
5766 8564 4.949856 CCTATTATTGGAGGTGTTGCACTT 59.050 41.667 0.00 0.00 34.40 3.16
5816 8614 0.466189 AAGCTGTGCCATTATCCCCG 60.466 55.000 0.00 0.00 0.00 5.73
5823 8621 1.868997 CGTTCGAAGCTGTGCCATT 59.131 52.632 0.00 0.00 0.00 3.16
5824 8622 2.680913 GCGTTCGAAGCTGTGCCAT 61.681 57.895 0.00 0.00 0.00 4.40
5827 8625 4.430423 CGGCGTTCGAAGCTGTGC 62.430 66.667 15.88 8.36 42.43 4.57
5884 8682 2.076100 CAATGCGTGCAGGAGTAGAAA 58.924 47.619 11.29 0.00 0.00 2.52
5947 8745 8.107095 AGAGGCTCCCGCAATAATAATAATAAA 58.893 33.333 11.71 0.00 38.10 1.40
5948 8746 7.630082 AGAGGCTCCCGCAATAATAATAATAA 58.370 34.615 11.71 0.00 38.10 1.40
5949 8747 7.195374 AGAGGCTCCCGCAATAATAATAATA 57.805 36.000 11.71 0.00 38.10 0.98
5952 8750 6.614694 TTAGAGGCTCCCGCAATAATAATA 57.385 37.500 11.71 0.00 38.10 0.98
5953 8751 5.499004 TTAGAGGCTCCCGCAATAATAAT 57.501 39.130 11.71 0.00 38.10 1.28
5959 11913 2.906389 TGATATTAGAGGCTCCCGCAAT 59.094 45.455 11.71 8.45 38.10 3.56
5964 11918 5.338463 GGTGGTAATGATATTAGAGGCTCCC 60.338 48.000 11.71 0.83 0.00 4.30
5985 11939 6.596309 TGATGGTATAGAATAGAGCAGGTG 57.404 41.667 0.00 0.00 43.97 4.00
5986 11940 7.805083 ATTGATGGTATAGAATAGAGCAGGT 57.195 36.000 0.00 0.00 43.97 4.00
6018 11972 3.637769 TGTGGGGAGGTTAATAAATGCC 58.362 45.455 0.00 0.00 0.00 4.40
6019 11973 5.869649 ATTGTGGGGAGGTTAATAAATGC 57.130 39.130 0.00 0.00 0.00 3.56
6021 11975 7.066781 CACCTATTGTGGGGAGGTTAATAAAT 58.933 38.462 0.00 0.00 41.80 1.40
6033 11987 6.847407 ACGAAGTAGTACACCTATTGTGGGG 61.847 48.000 2.52 0.00 45.69 4.96
6062 12016 2.978010 CCACGTGTCAGTTGCCCC 60.978 66.667 15.65 0.00 0.00 5.80
6080 12034 2.780993 CCAAAAATTCCGTCGAATCCG 58.219 47.619 0.00 0.00 37.76 4.18
6082 12036 3.487563 AGCCAAAAATTCCGTCGAATC 57.512 42.857 0.00 0.00 37.76 2.52
6140 12094 1.371467 TGCCAGAGATTCCAAGGGAA 58.629 50.000 0.00 0.00 46.39 3.97
6150 12104 2.743183 GCGTGAATACCTTGCCAGAGAT 60.743 50.000 0.00 0.00 0.00 2.75
6170 12124 1.097232 TTGGACTATGCATGCACAGC 58.903 50.000 25.54 17.25 0.00 4.40
6173 12127 1.402968 CCAGTTGGACTATGCATGCAC 59.597 52.381 25.37 10.28 37.39 4.57
6209 12163 1.517832 CTCGAGGGCTTCACCGAAT 59.482 57.895 3.91 0.00 40.62 3.34
6212 12166 4.821589 GGCTCGAGGGCTTCACCG 62.822 72.222 15.58 0.00 40.62 4.94
6251 12205 0.460284 AGACTTACGGCGATGGCAAG 60.460 55.000 16.62 10.74 42.47 4.01
6392 12346 4.873259 GTGCAAAACCTTGTGTTTACCATT 59.127 37.500 0.00 0.00 46.39 3.16
6415 12371 0.393077 ACTTGGTTCCTGAGTGTCGG 59.607 55.000 0.00 0.00 0.00 4.79
6416 12372 1.068588 TGACTTGGTTCCTGAGTGTCG 59.931 52.381 3.92 0.00 0.00 4.35
6419 12375 5.182001 CCTTTTATGACTTGGTTCCTGAGTG 59.818 44.000 3.92 0.00 0.00 3.51
6518 12476 8.523523 TTAATGTTTGCTCAGTCAATGATTTG 57.476 30.769 0.00 0.00 37.28 2.32
6519 12477 8.362639 ACTTAATGTTTGCTCAGTCAATGATTT 58.637 29.630 0.00 0.00 37.28 2.17
6567 12526 4.304110 TGAAGTTACGGTGATGTCTGTTC 58.696 43.478 0.00 0.00 0.00 3.18
6576 12535 2.818432 GAGGAGACTGAAGTTACGGTGA 59.182 50.000 0.00 0.00 44.43 4.02
6584 12543 0.318762 GGCAACGAGGAGACTGAAGT 59.681 55.000 0.00 0.00 44.43 3.01
6595 12554 1.665679 ACTGCGATAAATGGCAACGAG 59.334 47.619 0.00 0.00 40.95 4.18
6650 12609 3.255725 CAATTGGTGCTTGCGATGAAAT 58.744 40.909 0.00 0.00 0.00 2.17
6705 12664 3.083997 GGGATCGAGCCTGGGTGT 61.084 66.667 20.86 0.00 0.00 4.16
6706 12665 3.083349 TGGGATCGAGCCTGGGTG 61.083 66.667 20.86 0.00 0.00 4.61
6775 12734 3.187227 GTGCGGCATTCCATGAATAGTAG 59.813 47.826 5.72 0.00 30.44 2.57
6776 12735 3.138304 GTGCGGCATTCCATGAATAGTA 58.862 45.455 5.72 0.00 30.44 1.82
6777 12736 1.949525 GTGCGGCATTCCATGAATAGT 59.050 47.619 5.72 0.00 30.44 2.12
6813 12772 0.108585 GACCAAGTCCAAGCACAGGA 59.891 55.000 0.00 0.00 0.00 3.86
7107 13067 1.891150 CAACCCTTCTTGCATTCTGCT 59.109 47.619 0.34 0.00 45.31 4.24
7132 13092 5.749109 AGCGTAAATTAGATTGACTCCTTCG 59.251 40.000 0.00 0.00 0.00 3.79
7611 13571 2.076100 TGTGCAGAAGGTAATGAAGCG 58.924 47.619 0.00 0.00 0.00 4.68
7616 13576 5.830912 TGAGTTTTTGTGCAGAAGGTAATG 58.169 37.500 0.00 0.00 0.00 1.90
7890 13853 2.808906 CCCAAACTCTCTAAAGGGGG 57.191 55.000 0.00 0.00 32.59 5.40
8045 14009 7.664731 CCTGCATTTCATCAAGATAGTTAGGAT 59.335 37.037 0.00 0.00 0.00 3.24
8131 14095 0.846693 AGGGTCCAAACACTGAGCTT 59.153 50.000 0.00 0.00 37.89 3.74
8137 14101 1.052124 TCGGTGAGGGTCCAAACACT 61.052 55.000 10.57 0.00 43.69 3.55
8155 14119 6.291479 CCGAATCGACGAAGGTAAAATTACTC 60.291 42.308 3.36 0.00 33.25 2.59
8173 14137 2.125673 AGCGTGGTTCCCGAATCG 60.126 61.111 0.00 0.00 0.00 3.34
8194 14158 6.462552 TCATATGCTCCATCTGCTAGATAC 57.537 41.667 0.00 0.00 32.12 2.24
8196 14160 4.141892 GCTCATATGCTCCATCTGCTAGAT 60.142 45.833 0.00 0.00 34.74 1.98
8200 14164 1.003349 GGCTCATATGCTCCATCTGCT 59.997 52.381 0.00 0.00 0.00 4.24
8218 14182 5.522460 TGATCTTACTGCACTAATAAACGGC 59.478 40.000 0.00 0.00 0.00 5.68
8229 14193 9.428097 TGAATATATCATGTGATCTTACTGCAC 57.572 33.333 0.00 0.00 36.05 4.57
8337 14303 2.790433 GGTTGCAACCCTTATCTGTGA 58.210 47.619 34.36 0.00 43.43 3.58
8350 14316 1.701031 TTCAGACGGAGGGGTTGCAA 61.701 55.000 0.00 0.00 0.00 4.08
8382 14348 3.052455 ACAAATTTCGCCATTTTCCCC 57.948 42.857 0.00 0.00 0.00 4.81
8406 14372 2.215942 AAATACCTGGTGGAAGTGGC 57.784 50.000 10.23 0.00 37.04 5.01
8539 14509 4.021544 GGATACAGAAACATTTTGGCACCA 60.022 41.667 0.00 0.00 0.00 4.17
8617 14587 1.661112 GTTAACCATCTGCGAGACAGC 59.339 52.381 0.00 0.00 46.76 4.40
8626 14596 3.927142 GGTCTCGAACAGTTAACCATCTG 59.073 47.826 0.88 0.00 37.65 2.90
8643 14613 4.876679 GCTTAACCTGTAAATGGAGGTCTC 59.123 45.833 0.00 0.00 42.03 3.36
8710 14680 4.612264 TGTACCTCCAAGTAAAGTGACC 57.388 45.455 0.00 0.00 0.00 4.02
8735 14705 4.023536 GCTGAAAAACATAGTTTCACGGGA 60.024 41.667 0.00 0.00 39.46 5.14
8736 14706 4.226761 GCTGAAAAACATAGTTTCACGGG 58.773 43.478 0.00 0.00 39.46 5.28
8740 14710 7.939782 TGAGAATGCTGAAAAACATAGTTTCA 58.060 30.769 0.00 0.20 41.50 2.69
8845 14815 7.880160 TTTTGCAATGTATAGCACTAGGATT 57.120 32.000 0.00 0.00 41.05 3.01
9038 15306 7.425915 CGTAGCTTCTGAATATTCTATACGC 57.574 40.000 16.24 11.62 0.00 4.42
9061 15329 0.740149 TTAGGCAAAGGCATGATGCG 59.260 50.000 11.75 0.00 46.21 4.73
9384 15663 0.764890 CCGGATTATGGGCTGAAGGA 59.235 55.000 0.00 0.00 0.00 3.36
9405 15684 7.798596 AGGTCTATCAGCAATAACATTCTTG 57.201 36.000 0.00 0.00 0.00 3.02
9486 15765 3.882888 AGTTCGTTGAATCCAGCAAGAAA 59.117 39.130 0.00 0.00 0.00 2.52
9514 15793 7.885399 AGTCTACCATCAATAATATTCTTGGCC 59.115 37.037 12.20 0.00 0.00 5.36
9750 16029 1.277273 TCAGTGAATCAGCTGGTCAGG 59.723 52.381 15.13 12.36 33.81 3.86
9876 16158 4.741928 AGTACCTTTGGTTTTCCCTCAT 57.258 40.909 0.00 0.00 37.09 2.90
9883 16165 4.587262 GTGGGATGAAGTACCTTTGGTTTT 59.413 41.667 0.00 0.00 37.09 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.