AutoCloner

Multiple sequence alignment - TraesCS4A01G241400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G241400	chr4A	100.000	2267	0	0	1	2267	551139171	551136905	0.000000e+00	4187.0
1	TraesCS4A01G241400	chr4A	91.240	1210	76	13	1067	2265	533466896	533465706	0.000000e+00	1620.0
2	TraesCS4A01G241400	chr4A	90.768	1224	74	20	1057	2267	552250467	552251664	0.000000e+00	1598.0
3	TraesCS4A01G241400	chr4A	86.492	533	45	6	1459	1983	533465491	533464978	5.470000e-156	560.0
4	TraesCS4A01G241400	chr4A	82.660	421	43	9	670	1071	533473115	533472706	1.670000e-91	346.0
5	TraesCS4A01G241400	chr4A	90.000	160	8	4	2106	2265	533464972	533464821	1.370000e-47	200.0
6	TraesCS4A01G241400	chr4A	92.857	56	4	0	1	56	350252164	350252109	5.190000e-12	82.4
7	TraesCS4A01G241400	chr4B	86.540	1954	157	52	344	2265	68954428	68956307	0.000000e+00	2054.0
8	TraesCS4A01G241400	chr4B	88.838	1299	92	21	880	2164	68125131	68123872	0.000000e+00	1546.0
9	TraesCS4A01G241400	chr4B	86.737	1327	108	36	344	1639	68720135	68721424	0.000000e+00	1413.0
10	TraesCS4A01G241400	chr4B	94.454	595	30	3	1674	2267	68721424	68722016	0.000000e+00	913.0
11	TraesCS4A01G241400	chr4B	90.625	288	16	7	881	1168	68701182	68701458	2.750000e-99	372.0
12	TraesCS4A01G241400	chr4B	88.848	269	15	6	1163	1431	68718803	68719056	1.310000e-82	316.0
13	TraesCS4A01G241400	chr4B	88.667	150	10	4	52	195	68700090	68700238	2.310000e-40	176.0
14	TraesCS4A01G241400	chr4B	95.146	103	5	0	2164	2266	68123765	68123663	1.800000e-36	163.0
15	TraesCS4A01G241400	chr4B	86.577	149	13	1	194	335	68700304	68700452	8.380000e-35	158.0
16	TraesCS4A01G241400	chr4D	90.426	1316	83	23	433	1723	47329782	47331079	0.000000e+00	1692.0
17	TraesCS4A01G241400	chr4D	89.787	1312	73	21	651	1926	47322013	47323299	0.000000e+00	1624.0
18	TraesCS4A01G241400	chr4D	93.455	932	36	10	804	1723	46628340	46627422	0.000000e+00	1360.0
19	TraesCS4A01G241400	chr4D	95.478	575	26	0	1693	2267	46627422	46626848	0.000000e+00	918.0
20	TraesCS4A01G241400	chr4D	94.783	575	30	0	1693	2267	47331079	47331653	0.000000e+00	896.0
21	TraesCS4A01G241400	chr4D	87.838	222	22	2	436	653	47321584	47321804	2.890000e-64	255.0
22	TraesCS4A01G241400	chr4D	91.279	172	13	1	2097	2266	47323804	47323975	1.350000e-57	233.0
23	TraesCS4A01G241400	chr4D	88.333	120	14	0	216	335	47321293	47321412	6.530000e-31	145.0
24	TraesCS4A01G241400	chr4D	90.909	66	6	0	343	408	47321523	47321588	3.100000e-14	89.8
25	TraesCS4A01G241400	chr4D	97.727	44	1	0	343	386	47329692	47329735	2.410000e-10	76.8
26	TraesCS4A01G241400	chr7A	100.000	53	0	0	1	53	4945067	4945119	5.150000e-17	99.0
27	TraesCS4A01G241400	chr2D	96.364	55	2	0	2	56	189919073	189919019	8.620000e-15	91.6
28	TraesCS4A01G241400	chr5A	94.643	56	3	0	1	56	614344784	614344729	1.120000e-13	87.9
29	TraesCS4A01G241400	chr5A	94.643	56	3	0	1	56	667820558	667820503	1.120000e-13	87.9
30	TraesCS4A01G241400	chr6B	94.545	55	3	0	2	56	128378757	128378703	4.010000e-13	86.1
31	TraesCS4A01G241400	chr7D	96.000	50	1	1	4	53	322737356	322737404	1.870000e-11	80.5
32	TraesCS4A01G241400	chr2B	100.000	35	0	0	2	36	72422516	72422482	5.230000e-07	65.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G241400	chr4A	551136905	551139171	2266	True	4187.000000	4187	100.0000	1	2267	1	chr4A.!!$R3	2266
1	TraesCS4A01G241400	chr4A	552250467	552251664	1197	False	1598.000000	1598	90.7680	1057	2267	1	chr4A.!!$F1	1210
2	TraesCS4A01G241400	chr4A	533464821	533466896	2075	True	793.333333	1620	89.2440	1067	2265	3	chr4A.!!$R4	1198
3	TraesCS4A01G241400	chr4B	68954428	68956307	1879	False	2054.000000	2054	86.5400	344	2265	1	chr4B.!!$F1	1921
4	TraesCS4A01G241400	chr4B	68718803	68722016	3213	False	880.666667	1413	90.0130	344	2267	3	chr4B.!!$F3	1923
5	TraesCS4A01G241400	chr4B	68123663	68125131	1468	True	854.500000	1546	91.9920	880	2266	2	chr4B.!!$R1	1386
6	TraesCS4A01G241400	chr4B	68700090	68701458	1368	False	235.333333	372	88.6230	52	1168	3	chr4B.!!$F2	1116
7	TraesCS4A01G241400	chr4D	46626848	46628340	1492	True	1139.000000	1360	94.4665	804	2267	2	chr4D.!!$R1	1463
8	TraesCS4A01G241400	chr4D	47329692	47331653	1961	False	888.266667	1692	94.3120	343	2267	3	chr4D.!!$F2	1924
9	TraesCS4A01G241400	chr4D	47321293	47323975	2682	False	469.360000	1624	89.6292	216	2266	5	chr4D.!!$F1	2050

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
923	2254	0.949105	TTCTCCGTCTTTGCTTCCGC	60.949	55.0	0.0	0.0	0.0	5.54	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1904	3794	0.108138	AACAGTAGCCCGATGTGAGC	60.108	55.0	0.0	0.0	0.0	4.26	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	5.552870	GGGAAGCAGATAGAACCTATTCA	57.447	43.478	0.00	0.00	37.29	2.57
23	24	5.930135	GGGAAGCAGATAGAACCTATTCAA	58.070	41.667	0.00	0.00	37.29	2.69
24	25	6.538263	GGGAAGCAGATAGAACCTATTCAAT	58.462	40.000	0.00	0.00	37.29	2.57
25	26	6.652900	GGGAAGCAGATAGAACCTATTCAATC	59.347	42.308	0.00	0.00	37.29	2.67
26	27	7.220030	GGAAGCAGATAGAACCTATTCAATCA	58.780	38.462	0.00	0.00	37.29	2.57
27	28	7.716998	GGAAGCAGATAGAACCTATTCAATCAA	59.283	37.037	0.00	0.00	37.29	2.57
28	29	9.113838	GAAGCAGATAGAACCTATTCAATCAAA	57.886	33.333	0.00	0.00	37.29	2.69
29	30	9.466497	AAGCAGATAGAACCTATTCAATCAAAA	57.534	29.630	0.00	0.00	37.29	2.44
50	51	6.973229	AAAAACGTATTCTAACGCCTGTAT	57.027	33.333	0.00	0.00	46.71	2.29
51	52	6.973229	AAAACGTATTCTAACGCCTGTATT	57.027	33.333	0.00	0.00	46.71	1.89
52	53	6.973229	AAACGTATTCTAACGCCTGTATTT	57.027	33.333	0.00	0.00	46.71	1.40
54	55	6.340537	ACGTATTCTAACGCCTGTATTTTG	57.659	37.500	0.00	0.00	46.71	2.44
55	56	6.101332	ACGTATTCTAACGCCTGTATTTTGA	58.899	36.000	0.00	0.00	46.71	2.69
56	57	6.591062	ACGTATTCTAACGCCTGTATTTTGAA	59.409	34.615	0.00	0.00	46.71	2.69
60	61	6.189677	TCTAACGCCTGTATTTTGAAATGG	57.810	37.500	0.00	0.00	0.00	3.16
93	94	2.494918	CGGCCTCTTCTACACCCG	59.505	66.667	0.00	0.00	0.00	5.28
150	156	4.028852	CAGGATGCTCAAATGTGTGATG	57.971	45.455	0.00	0.00	0.00	3.07
183	190	3.670625	TCTCGGGTTGTTTAGACATTGG	58.329	45.455	0.00	0.00	35.29	3.16
185	192	3.670625	TCGGGTTGTTTAGACATTGGAG	58.329	45.455	0.00	0.00	35.29	3.86
187	194	3.558321	CGGGTTGTTTAGACATTGGAGGA	60.558	47.826	0.00	0.00	35.29	3.71
255	336	3.153369	TGTTTTGCCATGAGCTCCTTA	57.847	42.857	12.15	0.00	44.23	2.69
261	342	3.700538	TGCCATGAGCTCCTTAAATGTT	58.299	40.909	12.15	0.00	44.23	2.71
269	350	7.288810	TGAGCTCCTTAAATGTTCAAACAAT	57.711	32.000	12.15	0.00	43.03	2.71
274	355	7.603784	GCTCCTTAAATGTTCAAACAATCCAAT	59.396	33.333	0.00	0.00	43.03	3.16
324	405	7.763528	TGAGCATCTTACAACACAAAACAATTT	59.236	29.630	0.00	0.00	34.92	1.82
394	1414	3.496875	CTCTCCATCCGAGCGCCAG	62.497	68.421	2.29	0.00	38.62	4.85
431	1452	5.241662	AGAAGTAGAGTGGCAAATTGTCTC	58.758	41.667	0.00	0.00	0.00	3.36
432	1453	4.623932	AGTAGAGTGGCAAATTGTCTCA	57.376	40.909	0.00	0.00	0.00	3.27
468	1489	3.364167	GCGCCACAACTTTTCACGTATAA	60.364	43.478	0.00	0.00	0.00	0.98
479	1500	9.940166	AACTTTTCACGTATAACCTACAAAAAG	57.060	29.630	0.00	0.00	37.27	2.27
542	1566	9.909644	CGGTTGTACTGTATAATTTATAGAGCT	57.090	33.333	16.52	9.28	35.95	4.09
632	1660	2.230660	TGTCTTCGCTCAACTCTCTCA	58.769	47.619	0.00	0.00	0.00	3.27
649	1677	5.987098	TCTCTCATTCCTCCATCTTTTCAG	58.013	41.667	0.00	0.00	0.00	3.02
653	1892	6.388100	TCTCATTCCTCCATCTTTTCAGGTAT	59.612	38.462	0.00	0.00	0.00	2.73
723	1965	1.874019	CGCGTCATCCGAGGACTTG	60.874	63.158	11.18	0.14	39.56	3.16
797	2082	7.492352	AATACCTAATCGACTTGTTTATGGC	57.508	36.000	0.00	0.00	0.00	4.40
853	2141	4.750172	ATACGCGTATTCGACTTGTTTC	57.250	40.909	25.54	0.00	39.71	2.78
854	2142	1.384409	ACGCGTATTCGACTTGTTTCG	59.616	47.619	11.67	0.00	40.53	3.46
918	2249	5.712152	AATTTGATTTCTCCGTCTTTGCT	57.288	34.783	0.00	0.00	0.00	3.91
921	2252	3.074412	TGATTTCTCCGTCTTTGCTTCC	58.926	45.455	0.00	0.00	0.00	3.46
923	2254	0.949105	TTCTCCGTCTTTGCTTCCGC	60.949	55.000	0.00	0.00	0.00	5.54
924	2255	1.374758	CTCCGTCTTTGCTTCCGCT	60.375	57.895	0.00	0.00	36.97	5.52
1003	2339	4.529219	CCACAGCCGCCGCTATGA	62.529	66.667	6.90	0.00	42.44	2.15
1153	2498	3.398353	CTCCTTCTCGCCGACGACC	62.398	68.421	0.00	0.00	45.12	4.79
1195	2540	4.147449	CGATCCTGGACCGCAGCA	62.147	66.667	0.00	0.00	0.00	4.41
1229	2577	3.934962	GCGAGGCCCATCTCCCTC	61.935	72.222	0.00	0.00	43.35	4.30
1230	2578	2.123077	CGAGGCCCATCTCCCTCT	60.123	66.667	0.00	0.00	44.35	3.69
1231	2579	1.764054	CGAGGCCCATCTCCCTCTT	60.764	63.158	0.00	0.00	44.35	2.85
1232	2580	1.753368	CGAGGCCCATCTCCCTCTTC	61.753	65.000	0.00	0.00	44.35	2.87
1233	2581	1.385206	AGGCCCATCTCCCTCTTCC	60.385	63.158	0.00	0.00	0.00	3.46
1234	2582	1.694169	GGCCCATCTCCCTCTTCCA	60.694	63.158	0.00	0.00	0.00	3.53
1235	2583	1.704007	GGCCCATCTCCCTCTTCCAG	61.704	65.000	0.00	0.00	0.00	3.86
1302	2650	1.080230	CGTGACCAGGAGACAGCTG	60.080	63.158	13.48	13.48	0.00	4.24
1456	2816	7.510549	CCTGAAGAAGGTTCAATCTTTTACA	57.489	36.000	0.00	0.00	41.74	2.41
1593	2959	1.762370	TGTTGCTGAGTGTTGAGGAGA	59.238	47.619	0.00	0.00	0.00	3.71
1739	3165	3.339141	AGTCGAATCTTCCCAAGCTTTC	58.661	45.455	0.00	0.00	0.00	2.62
1777	3203	3.390135	TCTGGTTGTCTTTCGATGTGTC	58.610	45.455	0.00	0.00	0.00	3.67
1799	3225	4.792066	CCAATTGATGGGCCCTGT	57.208	55.556	25.70	12.25	46.27	4.00
1800	3226	2.995480	CCAATTGATGGGCCCTGTT	58.005	52.632	25.70	7.89	46.27	3.16
1801	3227	2.157640	CCAATTGATGGGCCCTGTTA	57.842	50.000	25.70	1.52	46.27	2.41
1802	3228	2.034124	CCAATTGATGGGCCCTGTTAG	58.966	52.381	25.70	6.79	46.27	2.34
1803	3229	2.034124	CAATTGATGGGCCCTGTTAGG	58.966	52.381	25.70	3.19	34.30	2.69
1880	3319	8.755018	CGGCTTGTTTGATAAATAAATTGATCC	58.245	33.333	0.00	0.00	0.00	3.36
1904	3794	0.870393	AAGCTGAGTTGTGATGTGCG	59.130	50.000	0.00	0.00	0.00	5.34
1934	3824	1.798813	GGCTACTGTTTTGTGACCTCG	59.201	52.381	0.00	0.00	0.00	4.63
2051	3941	4.383861	CCTCTGCAGCGGCTGTGA	62.384	66.667	28.88	23.99	41.91	3.58
2073	3963	2.990479	GAGGGACGGGATGCAGTT	59.010	61.111	0.00	0.00	0.00	3.16
2102	3992	3.008375	TGCTTCTTGGCTAGTGATTCTGT	59.992	43.478	0.00	0.00	0.00	3.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1	2	7.220030	TGATTGAATAGGTTCTATCTGCTTCC	58.780	38.462	11.70	0.00	42.95	3.46
2	3	8.668510	TTGATTGAATAGGTTCTATCTGCTTC	57.331	34.615	11.70	0.00	42.95	3.86
27	28	6.973229	ATACAGGCGTTAGAATACGTTTTT	57.027	33.333	0.00	0.00	43.22	1.94
28	29	6.973229	AATACAGGCGTTAGAATACGTTTT	57.027	33.333	0.00	0.00	43.22	2.43
29	30	6.973229	AAATACAGGCGTTAGAATACGTTT	57.027	33.333	0.00	0.00	43.22	3.60
31	32	6.101332	TCAAAATACAGGCGTTAGAATACGT	58.899	36.000	0.00	0.00	43.22	3.57
33	34	9.221775	CATTTCAAAATACAGGCGTTAGAATAC	57.778	33.333	0.00	0.00	0.00	1.89
35	36	7.257722	CCATTTCAAAATACAGGCGTTAGAAT	58.742	34.615	0.00	0.00	0.00	2.40
36	37	6.349777	CCCATTTCAAAATACAGGCGTTAGAA	60.350	38.462	0.00	0.00	0.00	2.10
37	38	5.124776	CCCATTTCAAAATACAGGCGTTAGA	59.875	40.000	0.00	0.00	0.00	2.10
39	40	4.767928	ACCCATTTCAAAATACAGGCGTTA	59.232	37.500	0.00	0.00	0.00	3.18
40	41	3.576550	ACCCATTTCAAAATACAGGCGTT	59.423	39.130	0.00	0.00	0.00	4.84
41	42	3.056891	CACCCATTTCAAAATACAGGCGT	60.057	43.478	0.00	0.00	0.00	5.68
42	43	3.192422	TCACCCATTTCAAAATACAGGCG	59.808	43.478	0.00	0.00	0.00	5.52
45	46	7.605449	AGAACATCACCCATTTCAAAATACAG	58.395	34.615	0.00	0.00	0.00	2.74
46	47	7.537596	AGAACATCACCCATTTCAAAATACA	57.462	32.000	0.00	0.00	0.00	2.29
48	49	8.642935	TGTAGAACATCACCCATTTCAAAATA	57.357	30.769	0.00	0.00	0.00	1.40
49	50	7.537596	TGTAGAACATCACCCATTTCAAAAT	57.462	32.000	0.00	0.00	0.00	1.82
50	51	6.968263	TGTAGAACATCACCCATTTCAAAA	57.032	33.333	0.00	0.00	0.00	2.44
162	169	3.325425	TCCAATGTCTAAACAACCCGAGA	59.675	43.478	0.00	0.00	39.30	4.04
163	170	3.670625	TCCAATGTCTAAACAACCCGAG	58.329	45.455	0.00	0.00	39.30	4.63
165	172	2.747446	CCTCCAATGTCTAAACAACCCG	59.253	50.000	0.00	0.00	39.30	5.28
335	416	1.406887	GCTACTGGGCCGAGAATTCAA	60.407	52.381	23.01	0.00	0.00	2.69
336	417	0.178068	GCTACTGGGCCGAGAATTCA	59.822	55.000	23.01	0.00	0.00	2.57
337	418	0.876342	CGCTACTGGGCCGAGAATTC	60.876	60.000	23.01	6.41	0.00	2.17
339	420	2.797278	CCGCTACTGGGCCGAGAAT	61.797	63.158	23.01	2.00	0.00	2.40
455	1476	8.562052	ACCTTTTTGTAGGTTATACGTGAAAAG	58.438	33.333	0.00	0.00	46.39	2.27
538	1562	4.142881	GGATCCGAAACAAACTTACAGCTC	60.143	45.833	0.00	0.00	0.00	4.09
566	1594	3.384532	GGGCGACGGGTTACAGGA	61.385	66.667	0.00	0.00	0.00	3.86
617	1645	2.425312	GAGGAATGAGAGAGTTGAGCGA	59.575	50.000	0.00	0.00	0.00	4.93
632	1660	6.581388	TCATACCTGAAAAGATGGAGGAAT	57.419	37.500	0.00	0.00	0.00	3.01
781	2066	8.067784	CGTATTTTATGCCATAAACAAGTCGAT	58.932	33.333	9.35	2.20	34.68	3.59
797	2082	9.417284	GGAAACAAGTCGAATACGTATTTTATG	57.583	33.333	21.18	16.73	40.69	1.90
918	2249	1.178276	GGAGAGAGTTGAGAGCGGAA	58.822	55.000	0.00	0.00	0.00	4.30
921	2252	1.735369	GCAAGGAGAGAGTTGAGAGCG	60.735	57.143	0.00	0.00	0.00	5.03
923	2254	2.166254	GGAGCAAGGAGAGAGTTGAGAG	59.834	54.545	0.00	0.00	0.00	3.20
924	2255	2.175202	GGAGCAAGGAGAGAGTTGAGA	58.825	52.381	0.00	0.00	0.00	3.27
1003	2339	3.200593	CGGGATCTCGACGGACGT	61.201	66.667	10.16	0.00	43.13	4.34
1228	2576	1.978580	GGTGGAAGGAAGACTGGAAGA	59.021	52.381	0.00	0.00	37.43	2.87
1229	2577	1.338200	CGGTGGAAGGAAGACTGGAAG	60.338	57.143	0.00	0.00	42.29	3.46
1230	2578	0.685097	CGGTGGAAGGAAGACTGGAA	59.315	55.000	0.00	0.00	0.00	3.53
1231	2579	1.827399	GCGGTGGAAGGAAGACTGGA	61.827	60.000	0.00	0.00	0.00	3.86
1232	2580	1.376037	GCGGTGGAAGGAAGACTGG	60.376	63.158	0.00	0.00	0.00	4.00
1233	2581	1.738099	CGCGGTGGAAGGAAGACTG	60.738	63.158	0.00	0.00	0.00	3.51
1234	2582	2.657237	CGCGGTGGAAGGAAGACT	59.343	61.111	0.00	0.00	0.00	3.24
1235	2583	2.434359	CCGCGGTGGAAGGAAGAC	60.434	66.667	19.50	0.00	42.00	3.01
1302	2650	3.259425	CTTCTGCCACAACTGCCGC	62.259	63.158	0.00	0.00	0.00	6.53
1341	2689	0.250338	ACAGTCGGCTCCTTTTCACC	60.250	55.000	0.00	0.00	0.00	4.02
1456	2816	4.973168	TCTGCAATAAACACAAGGAGAGT	58.027	39.130	0.00	0.00	0.00	3.24
1593	2959	6.045072	TGTAATCCGATTACTTCTGGTTGT	57.955	37.500	24.91	0.00	44.17	3.32
1797	3223	2.230508	CGGACTCTGTAACAGCCTAACA	59.769	50.000	0.00	0.00	0.00	2.41
1798	3224	2.416972	CCGGACTCTGTAACAGCCTAAC	60.417	54.545	0.00	0.00	0.00	2.34
1799	3225	1.822990	CCGGACTCTGTAACAGCCTAA	59.177	52.381	0.00	0.00	0.00	2.69
1800	3226	1.272313	ACCGGACTCTGTAACAGCCTA	60.272	52.381	9.46	0.00	0.00	3.93
1801	3227	0.542232	ACCGGACTCTGTAACAGCCT	60.542	55.000	9.46	0.00	0.00	4.58
1802	3228	0.320697	AACCGGACTCTGTAACAGCC	59.679	55.000	9.46	0.00	0.00	4.85
1803	3229	1.000506	TGAACCGGACTCTGTAACAGC	59.999	52.381	9.46	0.00	0.00	4.40
1804	3230	3.254060	CATGAACCGGACTCTGTAACAG	58.746	50.000	9.46	0.00	0.00	3.16
1880	3319	4.612259	GCACATCACAACTCAGCTTAAGTG	60.612	45.833	4.02	1.82	0.00	3.16
1904	3794	0.108138	AACAGTAGCCCGATGTGAGC	60.108	55.000	0.00	0.00	0.00	4.26
2073	3963	3.107601	ACTAGCCAAGAAGCACATAGGA	58.892	45.455	0.00	0.00	34.23	2.94

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.