Multiple sequence alignment - TraesCS4A01G240600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G240600 chr4A 100.000 5209 0 0 1 5209 550329176 550323968 0.000000e+00 9620.0
1 TraesCS4A01G240600 chr5A 95.550 4831 185 12 391 5206 27126701 27121886 0.000000e+00 7703.0
2 TraesCS4A01G240600 chr5A 95.203 1876 84 4 3193 5067 420632673 420630803 0.000000e+00 2961.0
3 TraesCS4A01G240600 chr5A 95.039 766 35 2 391 1154 420633951 420633187 0.000000e+00 1201.0
4 TraesCS4A01G240600 chr5A 96.464 509 18 0 1415 1923 420633184 420632676 0.000000e+00 841.0
5 TraesCS4A01G240600 chr1A 95.785 2657 106 3 2557 5208 401547524 401544869 0.000000e+00 4281.0
6 TraesCS4A01G240600 chr1A 94.195 1912 88 9 391 2296 401549413 401547519 0.000000e+00 2894.0
7 TraesCS4A01G240600 chr1A 91.142 779 44 11 2301 3073 579868576 579867817 0.000000e+00 1033.0
8 TraesCS4A01G240600 chr1A 95.745 188 8 0 3132 3319 579867029 579866842 2.360000e-78 303.0
9 TraesCS4A01G240600 chr1A 92.308 91 5 2 3054 3142 579867812 579867722 1.520000e-25 128.0
10 TraesCS4A01G240600 chr6A 96.937 1763 46 8 2301 4058 574610466 574608707 0.000000e+00 2950.0
11 TraesCS4A01G240600 chr6A 95.799 1476 50 5 2594 4058 201107707 201109181 0.000000e+00 2372.0
12 TraesCS4A01G240600 chr6A 94.293 736 38 3 381 1113 574611315 574610581 0.000000e+00 1123.0
13 TraesCS4A01G240600 chr6A 97.096 551 16 0 3508 4058 53869436 53868886 0.000000e+00 929.0
14 TraesCS4A01G240600 chr6A 95.211 522 23 2 594 1113 201106812 201107333 0.000000e+00 824.0
15 TraesCS4A01G240600 chr6A 95.385 260 12 0 2306 2565 201107453 201107712 1.040000e-111 414.0
16 TraesCS4A01G240600 chr6A 94.798 173 8 1 735 907 605995209 605995380 8.600000e-68 268.0
17 TraesCS4A01G240600 chr6A 97.368 152 4 0 3329 3480 136563147 136562996 5.170000e-65 259.0
18 TraesCS4A01G240600 chr2A 94.771 1530 62 6 953 2480 647178862 647180375 0.000000e+00 2366.0
19 TraesCS4A01G240600 chr2A 96.277 1155 39 3 4055 5208 32867658 32866507 0.000000e+00 1892.0
20 TraesCS4A01G240600 chr2A 94.510 1184 40 5 1117 2287 617004713 617005884 0.000000e+00 1803.0
21 TraesCS4A01G240600 chr2A 97.278 551 15 0 3508 4058 32868512 32867962 0.000000e+00 935.0
22 TraesCS4A01G240600 chr2A 95.283 530 23 2 391 919 647178329 647178857 0.000000e+00 839.0
23 TraesCS4A01G240600 chr2A 91.623 382 20 4 388 767 28102096 28102467 7.730000e-143 518.0
24 TraesCS4A01G240600 chr2A 93.919 148 3 3 2476 2622 647195084 647195226 8.780000e-53 219.0
25 TraesCS4A01G240600 chr2A 93.836 146 7 1 3125 3268 647195213 647195358 8.780000e-53 219.0
26 TraesCS4A01G240600 chr1B 95.848 1156 46 2 4055 5208 9251691 9250536 0.000000e+00 1868.0
27 TraesCS4A01G240600 chr1B 89.437 852 59 17 2301 3133 673181381 673180542 0.000000e+00 1046.0
28 TraesCS4A01G240600 chr1B 90.960 177 16 0 3138 3314 673179691 673179515 6.740000e-59 239.0
29 TraesCS4A01G240600 chr3B 95.439 1162 48 4 4051 5208 198334056 198335216 0.000000e+00 1847.0
30 TraesCS4A01G240600 chr3B 93.836 1168 53 5 1117 2284 18542616 18543764 0.000000e+00 1740.0
31 TraesCS4A01G240600 chr3B 94.307 685 35 1 1120 1800 644434023 644433339 0.000000e+00 1046.0
32 TraesCS4A01G240600 chr3B 97.268 549 15 0 3508 4056 778258560 778259108 0.000000e+00 931.0
33 TraesCS4A01G240600 chr3A 96.039 1136 43 2 4055 5189 491571300 491572434 0.000000e+00 1847.0
34 TraesCS4A01G240600 chr3A 94.675 1183 40 5 1117 2290 714028742 714027574 0.000000e+00 1814.0
35 TraesCS4A01G240600 chr5B 95.415 1156 51 2 4055 5208 255122938 255124093 0.000000e+00 1840.0
36 TraesCS4A01G240600 chr5B 92.518 695 41 3 1117 1800 468307048 468306354 0.000000e+00 985.0
37 TraesCS4A01G240600 chr5B 96.733 551 18 0 3508 4058 255122084 255122634 0.000000e+00 918.0
38 TraesCS4A01G240600 chr5B 91.966 473 25 7 391 863 692970720 692971179 0.000000e+00 651.0
39 TraesCS4A01G240600 chr7A 95.164 1158 50 4 4055 5208 639802247 639801092 0.000000e+00 1823.0
40 TraesCS4A01G240600 chr7A 93.942 1172 52 5 1117 2287 71732133 71733286 0.000000e+00 1753.0
41 TraesCS4A01G240600 chr7A 98.205 390 7 0 1 390 707357757 707358146 0.000000e+00 682.0
42 TraesCS4A01G240600 chr6B 94.017 1170 53 6 1117 2284 564720553 564721707 0.000000e+00 1757.0
43 TraesCS4A01G240600 chr6B 94.331 688 34 2 1117 1799 527622327 527621640 0.000000e+00 1050.0
44 TraesCS4A01G240600 chr6B 87.016 516 34 12 388 887 421314903 421315401 7.620000e-153 551.0
45 TraesCS4A01G240600 chr1D 92.152 841 48 9 2301 3133 483149054 483148224 0.000000e+00 1171.0
46 TraesCS4A01G240600 chr1D 86.226 530 35 18 390 907 180807912 180807409 1.650000e-149 540.0
47 TraesCS4A01G240600 chr1D 94.681 188 10 0 3132 3319 483147519 483147332 5.100000e-75 292.0
48 TraesCS4A01G240600 chr3D 92.000 525 32 3 390 907 209980101 209980622 0.000000e+00 728.0
49 TraesCS4A01G240600 chr3D 97.704 392 9 0 1 392 169813190 169812799 0.000000e+00 675.0
50 TraesCS4A01G240600 chr7D 97.704 392 9 0 1 392 30583957 30583566 0.000000e+00 675.0
51 TraesCS4A01G240600 chr7D 97.704 392 9 0 1 392 483979493 483979884 0.000000e+00 675.0
52 TraesCS4A01G240600 chr7D 96.581 117 4 0 3364 3480 513408895 513408779 1.480000e-45 195.0
53 TraesCS4A01G240600 chr7D 91.791 134 10 1 3347 3480 518889211 518889079 8.910000e-43 185.0
54 TraesCS4A01G240600 chr7D 95.000 40 0 2 3476 3515 518888977 518888940 1.570000e-05 62.1
55 TraesCS4A01G240600 chr5D 97.704 392 9 0 1 392 41204885 41205276 0.000000e+00 675.0
56 TraesCS4A01G240600 chr5D 97.704 392 9 0 1 392 473305076 473305467 0.000000e+00 675.0
57 TraesCS4A01G240600 chr5D 87.398 492 20 10 421 907 442384340 442383886 1.280000e-145 527.0
58 TraesCS4A01G240600 chr2D 97.704 392 9 0 1 392 294917800 294917409 0.000000e+00 675.0
59 TraesCS4A01G240600 chr2D 97.704 392 9 0 1 392 360342080 360342471 0.000000e+00 675.0
60 TraesCS4A01G240600 chr2D 97.704 392 9 0 1 392 516694125 516694516 0.000000e+00 675.0
61 TraesCS4A01G240600 chr2D 94.030 134 7 1 3347 3480 466830496 466830364 8.840000e-48 202.0
62 TraesCS4A01G240600 chr6D 92.348 379 17 6 389 767 47074896 47075262 3.570000e-146 529.0
63 TraesCS4A01G240600 chr6D 85.948 427 39 7 1574 1996 178629974 178630383 2.230000e-118 436.0
64 TraesCS4A01G240600 chr6D 94.030 134 8 0 3347 3480 473226576 473226709 2.460000e-48 204.0
65 TraesCS4A01G240600 chr6D 98.387 62 1 0 787 848 47075258 47075319 5.510000e-20 110.0
66 TraesCS4A01G240600 chr6D 100.000 33 0 0 3476 3508 473226809 473226841 1.570000e-05 62.1
67 TraesCS4A01G240600 chr4D 94.030 134 8 0 3347 3480 387796437 387796304 2.460000e-48 204.0
68 TraesCS4A01G240600 chr4D 89.552 134 14 0 3347 3480 79149237 79149104 2.490000e-38 171.0
69 TraesCS4A01G240600 chr4D 95.000 40 0 2 3476 3515 79149002 79148965 1.570000e-05 62.1
70 TraesCS4A01G240600 chr7B 95.000 40 0 2 3476 3515 670833351 670833314 1.570000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G240600 chr4A 550323968 550329176 5208 True 9620.000000 9620 100.000000 1 5209 1 chr4A.!!$R1 5208
1 TraesCS4A01G240600 chr5A 27121886 27126701 4815 True 7703.000000 7703 95.550000 391 5206 1 chr5A.!!$R1 4815
2 TraesCS4A01G240600 chr5A 420630803 420633951 3148 True 1667.666667 2961 95.568667 391 5067 3 chr5A.!!$R2 4676
3 TraesCS4A01G240600 chr1A 401544869 401549413 4544 True 3587.500000 4281 94.990000 391 5208 2 chr1A.!!$R1 4817
4 TraesCS4A01G240600 chr1A 579866842 579868576 1734 True 488.000000 1033 93.065000 2301 3319 3 chr1A.!!$R2 1018
5 TraesCS4A01G240600 chr6A 574608707 574611315 2608 True 2036.500000 2950 95.615000 381 4058 2 chr6A.!!$R3 3677
6 TraesCS4A01G240600 chr6A 201106812 201109181 2369 False 1203.333333 2372 95.465000 594 4058 3 chr6A.!!$F2 3464
7 TraesCS4A01G240600 chr6A 53868886 53869436 550 True 929.000000 929 97.096000 3508 4058 1 chr6A.!!$R1 550
8 TraesCS4A01G240600 chr2A 617004713 617005884 1171 False 1803.000000 1803 94.510000 1117 2287 1 chr2A.!!$F2 1170
9 TraesCS4A01G240600 chr2A 647178329 647180375 2046 False 1602.500000 2366 95.027000 391 2480 2 chr2A.!!$F3 2089
10 TraesCS4A01G240600 chr2A 32866507 32868512 2005 True 1413.500000 1892 96.777500 3508 5208 2 chr2A.!!$R1 1700
11 TraesCS4A01G240600 chr1B 9250536 9251691 1155 True 1868.000000 1868 95.848000 4055 5208 1 chr1B.!!$R1 1153
12 TraesCS4A01G240600 chr1B 673179515 673181381 1866 True 642.500000 1046 90.198500 2301 3314 2 chr1B.!!$R2 1013
13 TraesCS4A01G240600 chr3B 198334056 198335216 1160 False 1847.000000 1847 95.439000 4051 5208 1 chr3B.!!$F2 1157
14 TraesCS4A01G240600 chr3B 18542616 18543764 1148 False 1740.000000 1740 93.836000 1117 2284 1 chr3B.!!$F1 1167
15 TraesCS4A01G240600 chr3B 644433339 644434023 684 True 1046.000000 1046 94.307000 1120 1800 1 chr3B.!!$R1 680
16 TraesCS4A01G240600 chr3B 778258560 778259108 548 False 931.000000 931 97.268000 3508 4056 1 chr3B.!!$F3 548
17 TraesCS4A01G240600 chr3A 491571300 491572434 1134 False 1847.000000 1847 96.039000 4055 5189 1 chr3A.!!$F1 1134
18 TraesCS4A01G240600 chr3A 714027574 714028742 1168 True 1814.000000 1814 94.675000 1117 2290 1 chr3A.!!$R1 1173
19 TraesCS4A01G240600 chr5B 255122084 255124093 2009 False 1379.000000 1840 96.074000 3508 5208 2 chr5B.!!$F2 1700
20 TraesCS4A01G240600 chr5B 468306354 468307048 694 True 985.000000 985 92.518000 1117 1800 1 chr5B.!!$R1 683
21 TraesCS4A01G240600 chr7A 639801092 639802247 1155 True 1823.000000 1823 95.164000 4055 5208 1 chr7A.!!$R1 1153
22 TraesCS4A01G240600 chr7A 71732133 71733286 1153 False 1753.000000 1753 93.942000 1117 2287 1 chr7A.!!$F1 1170
23 TraesCS4A01G240600 chr6B 564720553 564721707 1154 False 1757.000000 1757 94.017000 1117 2284 1 chr6B.!!$F2 1167
24 TraesCS4A01G240600 chr6B 527621640 527622327 687 True 1050.000000 1050 94.331000 1117 1799 1 chr6B.!!$R1 682
25 TraesCS4A01G240600 chr1D 483147332 483149054 1722 True 731.500000 1171 93.416500 2301 3319 2 chr1D.!!$R2 1018
26 TraesCS4A01G240600 chr1D 180807409 180807912 503 True 540.000000 540 86.226000 390 907 1 chr1D.!!$R1 517
27 TraesCS4A01G240600 chr3D 209980101 209980622 521 False 728.000000 728 92.000000 390 907 1 chr3D.!!$F1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
192 193 0.032813 CCTGCAGATTGGAACCCCAT 60.033 55.0 17.39 0.00 43.12 4.00 F
1014 1067 0.178909 AGGAGATGGCATCGGAGGAT 60.179 55.0 21.01 2.99 0.00 3.24 F
1127 1180 0.251341 GCCCATGGGTGTCTTCAACT 60.251 55.0 31.58 0.00 37.65 3.16 F
1313 1370 0.533755 ACTTCTGCTTCTGCTGCGTT 60.534 50.0 0.00 0.00 40.48 4.84 F
2371 2445 0.615544 ATTTCCCTGTGCCCACATGG 60.616 55.0 14.29 14.29 45.02 3.66 F
3241 4226 0.316689 GTGGCCACTCAAACGAAACG 60.317 55.0 29.12 0.00 0.00 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1221 1277 0.111253 CTGCCTTCTCCACCTTGGTT 59.889 55.000 0.00 0.0 39.03 3.67 R
2371 2445 0.179134 ACTACAGATCACGAAGCGGC 60.179 55.000 0.00 0.0 0.00 6.53 R
3049 3144 2.391926 TCTGTGTGTTGGAGGGACTA 57.608 50.000 0.00 0.0 41.55 2.59 R
3236 4221 2.351726 ACTGTGCACTCAAAGACGTTTC 59.648 45.455 19.41 0.0 31.82 2.78 R
3472 4458 1.216710 GCTGTCAAGAGAGACCCGG 59.783 63.158 0.00 0.0 37.73 5.73 R
4554 5848 0.393944 TAGTCAGCGTCGATCACCCT 60.394 55.000 0.00 0.0 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.957288 ATACTTCACTGGCCACACC 57.043 52.632 0.00 0.00 39.84 4.16
20 21 0.107831 TACTTCACTGGCCACACCAC 59.892 55.000 0.00 0.00 46.36 4.16
21 22 1.149174 CTTCACTGGCCACACCACT 59.851 57.895 0.00 0.00 46.36 4.00
22 23 0.396435 CTTCACTGGCCACACCACTA 59.604 55.000 0.00 0.00 46.36 2.74
23 24 0.396435 TTCACTGGCCACACCACTAG 59.604 55.000 0.00 0.00 46.36 2.57
24 25 1.672356 CACTGGCCACACCACTAGC 60.672 63.158 0.00 0.00 46.36 3.42
25 26 2.045926 CTGGCCACACCACTAGCC 60.046 66.667 0.00 0.00 46.36 3.93
26 27 3.628646 CTGGCCACACCACTAGCCC 62.629 68.421 0.00 0.00 46.36 5.19
27 28 4.426313 GGCCACACCACTAGCCCC 62.426 72.222 0.00 0.00 39.60 5.80
28 29 3.646715 GCCACACCACTAGCCCCA 61.647 66.667 0.00 0.00 0.00 4.96
29 30 2.351276 CCACACCACTAGCCCCAC 59.649 66.667 0.00 0.00 0.00 4.61
30 31 2.351276 CACACCACTAGCCCCACC 59.649 66.667 0.00 0.00 0.00 4.61
31 32 2.122144 ACACCACTAGCCCCACCA 60.122 61.111 0.00 0.00 0.00 4.17
32 33 2.351276 CACCACTAGCCCCACCAC 59.649 66.667 0.00 0.00 0.00 4.16
33 34 2.122144 ACCACTAGCCCCACCACA 60.122 61.111 0.00 0.00 0.00 4.17
34 35 2.351276 CCACTAGCCCCACCACAC 59.649 66.667 0.00 0.00 0.00 3.82
35 36 2.525124 CCACTAGCCCCACCACACA 61.525 63.158 0.00 0.00 0.00 3.72
36 37 1.003355 CACTAGCCCCACCACACAG 60.003 63.158 0.00 0.00 0.00 3.66
37 38 2.224159 ACTAGCCCCACCACACAGG 61.224 63.158 0.00 0.00 45.67 4.00
38 39 1.918293 CTAGCCCCACCACACAGGA 60.918 63.158 0.00 0.00 41.22 3.86
39 40 2.185310 CTAGCCCCACCACACAGGAC 62.185 65.000 0.00 0.00 41.22 3.85
40 41 4.660938 GCCCCACCACACAGGACC 62.661 72.222 0.00 0.00 41.22 4.46
41 42 2.854032 CCCCACCACACAGGACCT 60.854 66.667 0.00 0.00 41.22 3.85
42 43 2.431683 CCCACCACACAGGACCTG 59.568 66.667 20.45 20.45 41.22 4.00
43 44 2.281761 CCACCACACAGGACCTGC 60.282 66.667 21.95 0.00 41.22 4.85
44 45 2.510411 CACCACACAGGACCTGCA 59.490 61.111 21.95 0.00 41.22 4.41
45 46 1.893808 CACCACACAGGACCTGCAC 60.894 63.158 21.95 0.00 41.22 4.57
46 47 2.072487 ACCACACAGGACCTGCACT 61.072 57.895 21.95 0.00 41.22 4.40
47 48 1.302033 CCACACAGGACCTGCACTC 60.302 63.158 21.95 0.00 41.22 3.51
48 49 1.302033 CACACAGGACCTGCACTCC 60.302 63.158 21.95 0.00 34.37 3.85
49 50 1.766059 ACACAGGACCTGCACTCCA 60.766 57.895 21.95 0.00 34.37 3.86
50 51 1.004080 CACAGGACCTGCACTCCAG 60.004 63.158 21.95 3.12 41.41 3.86
51 52 2.046507 CAGGACCTGCACTCCAGC 60.047 66.667 8.99 0.00 40.36 4.85
52 53 2.527624 AGGACCTGCACTCCAGCA 60.528 61.111 8.16 0.00 43.35 4.41
53 54 2.149383 AGGACCTGCACTCCAGCAA 61.149 57.895 8.16 0.00 45.13 3.91
54 55 1.228245 GGACCTGCACTCCAGCAAA 60.228 57.895 1.32 0.00 45.13 3.68
55 56 0.823356 GGACCTGCACTCCAGCAAAA 60.823 55.000 1.32 0.00 45.13 2.44
56 57 0.595095 GACCTGCACTCCAGCAAAAG 59.405 55.000 0.00 0.00 45.13 2.27
57 58 0.825010 ACCTGCACTCCAGCAAAAGG 60.825 55.000 0.00 0.00 45.13 3.11
58 59 0.825010 CCTGCACTCCAGCAAAAGGT 60.825 55.000 0.00 0.00 45.13 3.50
59 60 1.545428 CCTGCACTCCAGCAAAAGGTA 60.545 52.381 0.00 0.00 45.13 3.08
60 61 2.440409 CTGCACTCCAGCAAAAGGTAT 58.560 47.619 0.00 0.00 45.13 2.73
61 62 3.609853 CTGCACTCCAGCAAAAGGTATA 58.390 45.455 0.00 0.00 45.13 1.47
62 63 3.343617 TGCACTCCAGCAAAAGGTATAC 58.656 45.455 0.00 0.00 42.46 1.47
63 64 2.683362 GCACTCCAGCAAAAGGTATACC 59.317 50.000 14.54 14.54 0.00 2.73
64 65 2.936498 CACTCCAGCAAAAGGTATACCG 59.064 50.000 16.31 3.26 42.08 4.02
65 66 2.835764 ACTCCAGCAAAAGGTATACCGA 59.164 45.455 16.31 4.19 42.08 4.69
66 67 3.454812 ACTCCAGCAAAAGGTATACCGAT 59.545 43.478 16.31 6.84 42.08 4.18
67 68 4.080526 ACTCCAGCAAAAGGTATACCGATT 60.081 41.667 16.31 12.48 42.08 3.34
68 69 4.850680 TCCAGCAAAAGGTATACCGATTT 58.149 39.130 16.31 17.22 42.08 2.17
69 70 4.879545 TCCAGCAAAAGGTATACCGATTTC 59.120 41.667 19.71 12.57 42.08 2.17
70 71 4.638421 CCAGCAAAAGGTATACCGATTTCA 59.362 41.667 19.71 0.00 42.08 2.69
71 72 5.299279 CCAGCAAAAGGTATACCGATTTCAT 59.701 40.000 19.71 11.95 42.08 2.57
72 73 6.183360 CCAGCAAAAGGTATACCGATTTCATT 60.183 38.462 19.71 5.40 42.08 2.57
73 74 7.257722 CAGCAAAAGGTATACCGATTTCATTT 58.742 34.615 19.71 10.28 42.08 2.32
74 75 7.220683 CAGCAAAAGGTATACCGATTTCATTTG 59.779 37.037 19.71 18.68 42.08 2.32
75 76 6.019881 GCAAAAGGTATACCGATTTCATTTGC 60.020 38.462 24.15 24.15 42.08 3.68
76 77 5.767816 AAGGTATACCGATTTCATTTGCC 57.232 39.130 16.31 0.00 42.08 4.52
77 78 4.787551 AGGTATACCGATTTCATTTGCCA 58.212 39.130 16.31 0.00 42.08 4.92
78 79 5.385198 AGGTATACCGATTTCATTTGCCAT 58.615 37.500 16.31 0.00 42.08 4.40
79 80 6.539173 AGGTATACCGATTTCATTTGCCATA 58.461 36.000 16.31 0.00 42.08 2.74
80 81 6.655003 AGGTATACCGATTTCATTTGCCATAG 59.345 38.462 16.31 0.00 42.08 2.23
81 82 3.715628 ACCGATTTCATTTGCCATAGC 57.284 42.857 0.00 0.00 40.48 2.97
111 112 4.819630 TGTACCACAGAAAAATCACACTCC 59.180 41.667 0.00 0.00 0.00 3.85
112 113 3.897239 ACCACAGAAAAATCACACTCCA 58.103 40.909 0.00 0.00 0.00 3.86
113 114 3.885297 ACCACAGAAAAATCACACTCCAG 59.115 43.478 0.00 0.00 0.00 3.86
114 115 3.304928 CCACAGAAAAATCACACTCCAGC 60.305 47.826 0.00 0.00 0.00 4.85
115 116 3.316029 CACAGAAAAATCACACTCCAGCA 59.684 43.478 0.00 0.00 0.00 4.41
116 117 3.953612 ACAGAAAAATCACACTCCAGCAA 59.046 39.130 0.00 0.00 0.00 3.91
117 118 4.402155 ACAGAAAAATCACACTCCAGCAAA 59.598 37.500 0.00 0.00 0.00 3.68
118 119 5.105392 ACAGAAAAATCACACTCCAGCAAAA 60.105 36.000 0.00 0.00 0.00 2.44
119 120 5.811613 CAGAAAAATCACACTCCAGCAAAAA 59.188 36.000 0.00 0.00 0.00 1.94
120 121 6.019318 CAGAAAAATCACACTCCAGCAAAAAG 60.019 38.462 0.00 0.00 0.00 2.27
121 122 5.343307 AAAATCACACTCCAGCAAAAAGT 57.657 34.783 0.00 0.00 0.00 2.66
122 123 6.463995 AAAATCACACTCCAGCAAAAAGTA 57.536 33.333 0.00 0.00 0.00 2.24
123 124 5.438761 AATCACACTCCAGCAAAAAGTAC 57.561 39.130 0.00 0.00 0.00 2.73
124 125 3.879998 TCACACTCCAGCAAAAAGTACA 58.120 40.909 0.00 0.00 0.00 2.90
125 126 3.876914 TCACACTCCAGCAAAAAGTACAG 59.123 43.478 0.00 0.00 0.00 2.74
126 127 2.618709 ACACTCCAGCAAAAAGTACAGC 59.381 45.455 0.00 0.00 0.00 4.40
127 128 2.618241 CACTCCAGCAAAAAGTACAGCA 59.382 45.455 0.00 0.00 0.00 4.41
128 129 3.066621 CACTCCAGCAAAAAGTACAGCAA 59.933 43.478 0.00 0.00 0.00 3.91
129 130 3.316308 ACTCCAGCAAAAAGTACAGCAAG 59.684 43.478 0.00 0.00 0.00 4.01
130 131 3.287222 TCCAGCAAAAAGTACAGCAAGT 58.713 40.909 0.00 0.00 0.00 3.16
131 132 3.315191 TCCAGCAAAAAGTACAGCAAGTC 59.685 43.478 0.00 0.00 0.00 3.01
132 133 3.550842 CCAGCAAAAAGTACAGCAAGTCC 60.551 47.826 0.00 0.00 0.00 3.85
133 134 3.066621 CAGCAAAAAGTACAGCAAGTCCA 59.933 43.478 0.00 0.00 0.00 4.02
134 135 3.066760 AGCAAAAAGTACAGCAAGTCCAC 59.933 43.478 0.00 0.00 0.00 4.02
135 136 3.795488 GCAAAAAGTACAGCAAGTCCACC 60.795 47.826 0.00 0.00 0.00 4.61
136 137 1.878953 AAAGTACAGCAAGTCCACCG 58.121 50.000 0.00 0.00 0.00 4.94
137 138 0.034896 AAGTACAGCAAGTCCACCGG 59.965 55.000 0.00 0.00 0.00 5.28
138 139 2.033194 GTACAGCAAGTCCACCGGC 61.033 63.158 0.00 0.00 0.00 6.13
139 140 3.248446 TACAGCAAGTCCACCGGCC 62.248 63.158 0.00 0.00 0.00 6.13
143 144 2.742372 CAAGTCCACCGGCCGAAG 60.742 66.667 30.73 18.59 0.00 3.79
144 145 2.920912 AAGTCCACCGGCCGAAGA 60.921 61.111 30.73 17.42 0.00 2.87
145 146 3.236003 AAGTCCACCGGCCGAAGAC 62.236 63.158 30.73 27.35 0.00 3.01
146 147 4.754667 GTCCACCGGCCGAAGACC 62.755 72.222 30.73 7.60 0.00 3.85
148 149 3.072468 CCACCGGCCGAAGACCTA 61.072 66.667 30.73 0.00 0.00 3.08
149 150 2.432300 CCACCGGCCGAAGACCTAT 61.432 63.158 30.73 0.00 0.00 2.57
150 151 1.067582 CACCGGCCGAAGACCTATC 59.932 63.158 30.73 0.00 0.00 2.08
151 152 2.132352 ACCGGCCGAAGACCTATCC 61.132 63.158 30.73 0.00 0.00 2.59
152 153 2.735237 CGGCCGAAGACCTATCCC 59.265 66.667 24.07 0.00 0.00 3.85
153 154 2.131709 CGGCCGAAGACCTATCCCA 61.132 63.158 24.07 0.00 0.00 4.37
154 155 1.682451 CGGCCGAAGACCTATCCCAA 61.682 60.000 24.07 0.00 0.00 4.12
155 156 0.179054 GGCCGAAGACCTATCCCAAC 60.179 60.000 0.00 0.00 0.00 3.77
156 157 0.831307 GCCGAAGACCTATCCCAACT 59.169 55.000 0.00 0.00 0.00 3.16
157 158 2.037144 GCCGAAGACCTATCCCAACTA 58.963 52.381 0.00 0.00 0.00 2.24
158 159 2.223994 GCCGAAGACCTATCCCAACTAC 60.224 54.545 0.00 0.00 0.00 2.73
159 160 3.028850 CCGAAGACCTATCCCAACTACA 58.971 50.000 0.00 0.00 0.00 2.74
160 161 3.068307 CCGAAGACCTATCCCAACTACAG 59.932 52.174 0.00 0.00 0.00 2.74
161 162 3.952323 CGAAGACCTATCCCAACTACAGA 59.048 47.826 0.00 0.00 0.00 3.41
162 163 4.036971 CGAAGACCTATCCCAACTACAGAG 59.963 50.000 0.00 0.00 0.00 3.35
163 164 4.883021 AGACCTATCCCAACTACAGAGA 57.117 45.455 0.00 0.00 0.00 3.10
164 165 4.538738 AGACCTATCCCAACTACAGAGAC 58.461 47.826 0.00 0.00 0.00 3.36
165 166 3.288964 ACCTATCCCAACTACAGAGACG 58.711 50.000 0.00 0.00 0.00 4.18
166 167 2.623889 CCTATCCCAACTACAGAGACGG 59.376 54.545 0.00 0.00 0.00 4.79
167 168 0.824759 ATCCCAACTACAGAGACGGC 59.175 55.000 0.00 0.00 0.00 5.68
168 169 1.218316 CCCAACTACAGAGACGGCC 59.782 63.158 0.00 0.00 0.00 6.13
169 170 1.541310 CCCAACTACAGAGACGGCCA 61.541 60.000 2.24 0.00 0.00 5.36
170 171 0.320374 CCAACTACAGAGACGGCCAA 59.680 55.000 2.24 0.00 0.00 4.52
171 172 1.066143 CCAACTACAGAGACGGCCAAT 60.066 52.381 2.24 0.00 0.00 3.16
172 173 2.615493 CCAACTACAGAGACGGCCAATT 60.615 50.000 2.24 0.00 0.00 2.32
173 174 2.673368 CAACTACAGAGACGGCCAATTC 59.327 50.000 2.24 0.00 0.00 2.17
174 175 1.207329 ACTACAGAGACGGCCAATTCC 59.793 52.381 2.24 0.00 0.00 3.01
175 176 1.482593 CTACAGAGACGGCCAATTCCT 59.517 52.381 2.24 0.00 0.00 3.36
176 177 0.036010 ACAGAGACGGCCAATTCCTG 60.036 55.000 2.24 5.58 0.00 3.86
177 178 1.078143 AGAGACGGCCAATTCCTGC 60.078 57.895 2.24 0.00 0.00 4.85
178 179 1.377202 GAGACGGCCAATTCCTGCA 60.377 57.895 2.24 0.00 0.00 4.41
179 180 1.372087 GAGACGGCCAATTCCTGCAG 61.372 60.000 6.78 6.78 0.00 4.41
180 181 1.377202 GACGGCCAATTCCTGCAGA 60.377 57.895 17.39 0.00 0.00 4.26
181 182 0.749454 GACGGCCAATTCCTGCAGAT 60.749 55.000 17.39 0.00 0.00 2.90
182 183 0.323725 ACGGCCAATTCCTGCAGATT 60.324 50.000 17.39 4.89 0.00 2.40
183 184 0.101759 CGGCCAATTCCTGCAGATTG 59.898 55.000 17.39 17.29 0.00 2.67
184 185 0.462789 GGCCAATTCCTGCAGATTGG 59.537 55.000 29.89 29.89 44.64 3.16
185 186 1.477553 GCCAATTCCTGCAGATTGGA 58.522 50.000 34.79 17.57 44.62 3.53
186 187 1.826720 GCCAATTCCTGCAGATTGGAA 59.173 47.619 34.79 23.73 44.62 3.53
187 188 2.417787 GCCAATTCCTGCAGATTGGAAC 60.418 50.000 34.79 21.78 44.62 3.62
188 189 2.167075 CCAATTCCTGCAGATTGGAACC 59.833 50.000 30.24 0.00 44.62 3.62
189 190 2.149973 ATTCCTGCAGATTGGAACCC 57.850 50.000 17.39 0.00 44.02 4.11
190 191 0.039618 TTCCTGCAGATTGGAACCCC 59.960 55.000 17.39 0.00 37.42 4.95
191 192 1.139498 TCCTGCAGATTGGAACCCCA 61.139 55.000 17.39 0.00 41.64 4.96
192 193 0.032813 CCTGCAGATTGGAACCCCAT 60.033 55.000 17.39 0.00 43.12 4.00
193 194 1.620524 CCTGCAGATTGGAACCCCATT 60.621 52.381 17.39 0.00 43.12 3.16
194 195 1.753073 CTGCAGATTGGAACCCCATTC 59.247 52.381 8.42 0.00 43.12 2.67
206 207 5.930837 GAACCCCATTCCATTTATTCACA 57.069 39.130 0.00 0.00 0.00 3.58
207 208 5.660460 GAACCCCATTCCATTTATTCACAC 58.340 41.667 0.00 0.00 0.00 3.82
208 209 4.946646 ACCCCATTCCATTTATTCACACT 58.053 39.130 0.00 0.00 0.00 3.55
209 210 5.341169 ACCCCATTCCATTTATTCACACTT 58.659 37.500 0.00 0.00 0.00 3.16
210 211 5.784906 ACCCCATTCCATTTATTCACACTTT 59.215 36.000 0.00 0.00 0.00 2.66
211 212 6.957020 ACCCCATTCCATTTATTCACACTTTA 59.043 34.615 0.00 0.00 0.00 1.85
212 213 7.456269 ACCCCATTCCATTTATTCACACTTTAA 59.544 33.333 0.00 0.00 0.00 1.52
213 214 8.317679 CCCCATTCCATTTATTCACACTTTAAA 58.682 33.333 0.00 0.00 0.00 1.52
214 215 9.717942 CCCATTCCATTTATTCACACTTTAAAA 57.282 29.630 0.00 0.00 0.00 1.52
225 226 8.947055 ATTCACACTTTAAAAGACAATGCTTT 57.053 26.923 0.00 0.00 39.65 3.51
226 227 7.985634 TCACACTTTAAAAGACAATGCTTTC 57.014 32.000 0.00 0.00 37.12 2.62
227 228 7.542890 TCACACTTTAAAAGACAATGCTTTCA 58.457 30.769 0.00 0.00 37.12 2.69
228 229 8.031864 TCACACTTTAAAAGACAATGCTTTCAA 58.968 29.630 0.00 0.00 37.12 2.69
229 230 8.819974 CACACTTTAAAAGACAATGCTTTCAAT 58.180 29.630 0.00 0.00 37.12 2.57
230 231 8.819974 ACACTTTAAAAGACAATGCTTTCAATG 58.180 29.630 0.00 2.15 37.12 2.82
231 232 8.819974 CACTTTAAAAGACAATGCTTTCAATGT 58.180 29.630 0.00 2.62 38.92 2.71
232 233 9.382275 ACTTTAAAAGACAATGCTTTCAATGTT 57.618 25.926 0.00 0.00 36.52 2.71
233 234 9.640974 CTTTAAAAGACAATGCTTTCAATGTTG 57.359 29.630 3.84 0.00 36.52 3.33
234 235 8.715191 TTAAAAGACAATGCTTTCAATGTTGT 57.285 26.923 3.84 0.00 36.52 3.32
235 236 7.614124 AAAAGACAATGCTTTCAATGTTGTT 57.386 28.000 3.84 0.00 36.52 2.83
236 237 8.715191 AAAAGACAATGCTTTCAATGTTGTTA 57.285 26.923 3.84 0.00 36.52 2.41
237 238 7.935338 AAGACAATGCTTTCAATGTTGTTAG 57.065 32.000 0.00 0.00 36.52 2.34
238 239 6.449698 AGACAATGCTTTCAATGTTGTTAGG 58.550 36.000 0.00 0.00 36.52 2.69
239 240 5.540911 ACAATGCTTTCAATGTTGTTAGGG 58.459 37.500 0.00 0.00 32.72 3.53
240 241 5.304101 ACAATGCTTTCAATGTTGTTAGGGA 59.696 36.000 0.00 0.00 32.72 4.20
241 242 4.846779 TGCTTTCAATGTTGTTAGGGAC 57.153 40.909 0.00 0.00 0.00 4.46
242 243 4.469657 TGCTTTCAATGTTGTTAGGGACT 58.530 39.130 0.00 0.00 46.37 3.85
243 244 5.626142 TGCTTTCAATGTTGTTAGGGACTA 58.374 37.500 0.00 0.00 41.75 2.59
244 245 5.472137 TGCTTTCAATGTTGTTAGGGACTAC 59.528 40.000 0.00 0.00 42.67 2.73
245 246 5.390567 GCTTTCAATGTTGTTAGGGACTACG 60.391 44.000 0.00 0.00 42.67 3.51
246 247 4.877378 TCAATGTTGTTAGGGACTACGT 57.123 40.909 0.00 0.00 42.67 3.57
247 248 4.562082 TCAATGTTGTTAGGGACTACGTG 58.438 43.478 0.00 0.00 42.67 4.49
248 249 2.443887 TGTTGTTAGGGACTACGTGC 57.556 50.000 0.00 0.00 42.67 5.34
249 250 1.687660 TGTTGTTAGGGACTACGTGCA 59.312 47.619 0.00 0.00 42.67 4.57
250 251 2.300723 TGTTGTTAGGGACTACGTGCAT 59.699 45.455 0.00 0.00 42.67 3.96
251 252 3.510753 TGTTGTTAGGGACTACGTGCATA 59.489 43.478 0.00 0.00 42.67 3.14
252 253 4.160814 TGTTGTTAGGGACTACGTGCATAT 59.839 41.667 0.00 0.00 42.67 1.78
253 254 5.360429 TGTTGTTAGGGACTACGTGCATATA 59.640 40.000 0.00 0.00 42.67 0.86
254 255 6.041182 TGTTGTTAGGGACTACGTGCATATAT 59.959 38.462 0.00 0.00 42.67 0.86
255 256 6.659745 TGTTAGGGACTACGTGCATATATT 57.340 37.500 0.00 0.00 42.67 1.28
256 257 6.684686 TGTTAGGGACTACGTGCATATATTC 58.315 40.000 0.00 0.00 42.67 1.75
257 258 4.803098 AGGGACTACGTGCATATATTCC 57.197 45.455 0.00 0.00 36.02 3.01
258 259 3.514309 AGGGACTACGTGCATATATTCCC 59.486 47.826 19.94 19.94 39.50 3.97
259 260 3.259876 GGGACTACGTGCATATATTCCCA 59.740 47.826 21.48 0.00 39.18 4.37
260 261 4.081087 GGGACTACGTGCATATATTCCCAT 60.081 45.833 21.48 0.00 39.18 4.00
261 262 5.109903 GGACTACGTGCATATATTCCCATC 58.890 45.833 0.00 0.00 0.00 3.51
262 263 5.337250 GGACTACGTGCATATATTCCCATCA 60.337 44.000 0.00 0.00 0.00 3.07
263 264 6.299805 ACTACGTGCATATATTCCCATCAT 57.700 37.500 0.00 0.00 0.00 2.45
264 265 6.108687 ACTACGTGCATATATTCCCATCATG 58.891 40.000 0.00 0.00 0.00 3.07
265 266 4.264253 ACGTGCATATATTCCCATCATGG 58.736 43.478 0.00 0.00 37.25 3.66
280 281 6.570672 CCATCATGGGAAGATTATTGTGAG 57.429 41.667 0.00 0.00 32.67 3.51
281 282 5.475909 CCATCATGGGAAGATTATTGTGAGG 59.524 44.000 0.00 0.00 32.67 3.86
282 283 5.974156 TCATGGGAAGATTATTGTGAGGA 57.026 39.130 0.00 0.00 0.00 3.71
283 284 5.684704 TCATGGGAAGATTATTGTGAGGAC 58.315 41.667 0.00 0.00 0.00 3.85
284 285 5.191522 TCATGGGAAGATTATTGTGAGGACA 59.808 40.000 0.00 0.00 0.00 4.02
285 286 5.512942 TGGGAAGATTATTGTGAGGACAA 57.487 39.130 0.00 0.00 46.13 3.18
286 287 5.886609 TGGGAAGATTATTGTGAGGACAAA 58.113 37.500 0.00 0.00 45.23 2.83
287 288 5.945784 TGGGAAGATTATTGTGAGGACAAAG 59.054 40.000 0.00 0.00 45.23 2.77
288 289 6.180472 GGGAAGATTATTGTGAGGACAAAGA 58.820 40.000 0.00 0.00 45.23 2.52
289 290 6.659242 GGGAAGATTATTGTGAGGACAAAGAA 59.341 38.462 0.00 0.00 45.23 2.52
290 291 7.362142 GGGAAGATTATTGTGAGGACAAAGAAC 60.362 40.741 0.00 0.00 45.23 3.01
291 292 7.174946 GGAAGATTATTGTGAGGACAAAGAACA 59.825 37.037 0.00 0.00 45.23 3.18
292 293 8.641498 AAGATTATTGTGAGGACAAAGAACAT 57.359 30.769 0.00 0.00 45.23 2.71
293 294 8.641498 AGATTATTGTGAGGACAAAGAACATT 57.359 30.769 0.00 0.00 45.23 2.71
294 295 9.082313 AGATTATTGTGAGGACAAAGAACATTT 57.918 29.630 0.00 0.00 45.23 2.32
295 296 9.696917 GATTATTGTGAGGACAAAGAACATTTT 57.303 29.630 0.00 0.00 45.23 1.82
296 297 8.870160 TTATTGTGAGGACAAAGAACATTTTG 57.130 30.769 0.00 0.00 45.23 2.44
297 298 6.522625 TTGTGAGGACAAAGAACATTTTGA 57.477 33.333 5.58 0.00 39.20 2.69
298 299 5.890334 TGTGAGGACAAAGAACATTTTGAC 58.110 37.500 5.58 0.00 39.79 3.18
299 300 5.417266 TGTGAGGACAAAGAACATTTTGACA 59.583 36.000 5.58 0.00 39.79 3.58
300 301 6.096705 TGTGAGGACAAAGAACATTTTGACAT 59.903 34.615 5.58 0.00 39.79 3.06
301 302 6.638468 GTGAGGACAAAGAACATTTTGACATC 59.362 38.462 5.58 6.98 40.87 3.06
302 303 6.547141 TGAGGACAAAGAACATTTTGACATCT 59.453 34.615 13.36 0.82 40.98 2.90
303 304 7.068593 TGAGGACAAAGAACATTTTGACATCTT 59.931 33.333 13.36 0.00 40.98 2.40
304 305 7.428826 AGGACAAAGAACATTTTGACATCTTC 58.571 34.615 5.58 0.00 39.79 2.87
305 306 6.642540 GGACAAAGAACATTTTGACATCTTCC 59.357 38.462 5.58 0.00 39.79 3.46
306 307 7.352079 ACAAAGAACATTTTGACATCTTCCT 57.648 32.000 5.58 0.00 39.79 3.36
307 308 7.205297 ACAAAGAACATTTTGACATCTTCCTG 58.795 34.615 5.58 0.00 39.79 3.86
308 309 6.966534 AAGAACATTTTGACATCTTCCTGT 57.033 33.333 0.00 0.00 0.00 4.00
309 310 6.566197 AGAACATTTTGACATCTTCCTGTC 57.434 37.500 0.00 0.00 44.70 3.51
310 311 5.474876 AGAACATTTTGACATCTTCCTGTCC 59.525 40.000 2.08 0.00 43.99 4.02
311 312 4.728772 ACATTTTGACATCTTCCTGTCCA 58.271 39.130 2.08 0.00 43.99 4.02
312 313 5.139727 ACATTTTGACATCTTCCTGTCCAA 58.860 37.500 2.08 0.00 43.99 3.53
313 314 5.010012 ACATTTTGACATCTTCCTGTCCAAC 59.990 40.000 2.08 0.00 43.99 3.77
314 315 4.437682 TTTGACATCTTCCTGTCCAACT 57.562 40.909 2.08 0.00 43.99 3.16
315 316 4.437682 TTGACATCTTCCTGTCCAACTT 57.562 40.909 2.08 0.00 43.99 2.66
316 317 5.560722 TTGACATCTTCCTGTCCAACTTA 57.439 39.130 2.08 0.00 43.99 2.24
317 318 4.894784 TGACATCTTCCTGTCCAACTTAC 58.105 43.478 2.08 0.00 43.99 2.34
318 319 3.926616 ACATCTTCCTGTCCAACTTACG 58.073 45.455 0.00 0.00 0.00 3.18
319 320 3.323979 ACATCTTCCTGTCCAACTTACGT 59.676 43.478 0.00 0.00 0.00 3.57
320 321 3.380479 TCTTCCTGTCCAACTTACGTG 57.620 47.619 0.00 0.00 0.00 4.49
321 322 2.696707 TCTTCCTGTCCAACTTACGTGT 59.303 45.455 0.00 0.00 0.00 4.49
322 323 3.890756 TCTTCCTGTCCAACTTACGTGTA 59.109 43.478 0.00 0.00 0.00 2.90
323 324 4.341806 TCTTCCTGTCCAACTTACGTGTAA 59.658 41.667 0.00 0.00 0.00 2.41
324 325 4.247267 TCCTGTCCAACTTACGTGTAAG 57.753 45.455 16.21 16.21 45.95 2.34
339 340 6.844696 ACGTGTAAGTGCTATTATTCATGG 57.155 37.500 0.00 0.00 0.00 3.66
340 341 6.346096 ACGTGTAAGTGCTATTATTCATGGT 58.654 36.000 0.00 0.00 0.00 3.55
341 342 6.821665 ACGTGTAAGTGCTATTATTCATGGTT 59.178 34.615 0.00 0.00 0.00 3.67
342 343 7.982919 ACGTGTAAGTGCTATTATTCATGGTTA 59.017 33.333 0.00 0.00 0.00 2.85
343 344 8.988934 CGTGTAAGTGCTATTATTCATGGTTAT 58.011 33.333 0.00 0.00 0.00 1.89
358 359 8.655651 TTCATGGTTATTGTTTTCCTGTTTTC 57.344 30.769 0.00 0.00 0.00 2.29
359 360 8.017418 TCATGGTTATTGTTTTCCTGTTTTCT 57.983 30.769 0.00 0.00 0.00 2.52
360 361 7.925483 TCATGGTTATTGTTTTCCTGTTTTCTG 59.075 33.333 0.00 0.00 0.00 3.02
361 362 6.045955 TGGTTATTGTTTTCCTGTTTTCTGC 58.954 36.000 0.00 0.00 0.00 4.26
362 363 6.127196 TGGTTATTGTTTTCCTGTTTTCTGCT 60.127 34.615 0.00 0.00 0.00 4.24
363 364 6.200854 GGTTATTGTTTTCCTGTTTTCTGCTG 59.799 38.462 0.00 0.00 0.00 4.41
364 365 5.596836 ATTGTTTTCCTGTTTTCTGCTGA 57.403 34.783 0.00 0.00 0.00 4.26
365 366 5.596836 TTGTTTTCCTGTTTTCTGCTGAT 57.403 34.783 0.00 0.00 0.00 2.90
366 367 5.596836 TGTTTTCCTGTTTTCTGCTGATT 57.403 34.783 0.00 0.00 0.00 2.57
367 368 5.350633 TGTTTTCCTGTTTTCTGCTGATTG 58.649 37.500 0.00 0.00 0.00 2.67
368 369 5.126869 TGTTTTCCTGTTTTCTGCTGATTGA 59.873 36.000 0.00 0.00 0.00 2.57
369 370 5.850557 TTTCCTGTTTTCTGCTGATTGAA 57.149 34.783 0.00 0.00 0.00 2.69
370 371 4.836125 TCCTGTTTTCTGCTGATTGAAC 57.164 40.909 0.00 1.73 0.00 3.18
371 372 4.206375 TCCTGTTTTCTGCTGATTGAACA 58.794 39.130 13.24 13.24 0.00 3.18
372 373 4.036734 TCCTGTTTTCTGCTGATTGAACAC 59.963 41.667 11.16 0.00 0.00 3.32
373 374 4.202040 CCTGTTTTCTGCTGATTGAACACA 60.202 41.667 11.16 0.00 33.59 3.72
374 375 5.508489 CCTGTTTTCTGCTGATTGAACACAT 60.508 40.000 11.16 0.00 34.00 3.21
375 376 5.522456 TGTTTTCTGCTGATTGAACACATC 58.478 37.500 11.16 0.00 30.85 3.06
376 377 5.067544 TGTTTTCTGCTGATTGAACACATCA 59.932 36.000 11.16 0.00 30.85 3.07
432 433 3.079578 ACACAGACGCTTACTAGTAGCA 58.920 45.455 18.33 0.88 0.00 3.49
586 589 2.632996 GGGACATGCCATAGTAGTAGCA 59.367 50.000 8.20 0.00 40.00 3.49
628 631 7.259161 GCTACTACTTTGTGAATAGCTGTAGT 58.741 38.462 11.15 11.15 41.02 2.73
704 709 2.516888 CCACCAACCGTCCCACTCT 61.517 63.158 0.00 0.00 0.00 3.24
1014 1067 0.178909 AGGAGATGGCATCGGAGGAT 60.179 55.000 21.01 2.99 0.00 3.24
1127 1180 0.251341 GCCCATGGGTGTCTTCAACT 60.251 55.000 31.58 0.00 37.65 3.16
1212 1268 5.045578 GCACCCCTGTGATGATATATAGGTT 60.046 44.000 0.00 0.00 45.76 3.50
1283 1340 5.622233 GCAACTTCCTCACAAACTTCTTGTT 60.622 40.000 0.00 0.00 41.29 2.83
1313 1370 0.533755 ACTTCTGCTTCTGCTGCGTT 60.534 50.000 0.00 0.00 40.48 4.84
1529 1602 4.742201 AATGCAGCTCCGTCGCGT 62.742 61.111 5.77 0.00 34.40 6.01
1567 1640 1.981495 ACTCACTCCCCTCTTCCTTTG 59.019 52.381 0.00 0.00 0.00 2.77
1602 1675 5.095490 GGGTCATCAAATTTTCTTGCTACG 58.905 41.667 0.00 0.00 0.00 3.51
1632 1705 9.965902 ACATTAGAGAGGACAAGTCAATAAAAT 57.034 29.630 2.29 0.00 0.00 1.82
1731 1804 1.446618 CTTGCGGAAATGCCAAGCC 60.447 57.895 0.00 0.00 35.94 4.35
1843 1916 9.710900 ACGAATGAATATATGCATCACTCTTTA 57.289 29.630 0.19 0.00 0.00 1.85
1853 1926 4.142116 TGCATCACTCTTTATTTGGCATGG 60.142 41.667 0.00 0.00 0.00 3.66
1925 1998 7.041508 CCTGATCAGTTCCTAATGTAGATTTGC 60.042 40.741 21.11 0.00 0.00 3.68
1942 2015 2.526304 TGCAGTTGGACACAGTAGAC 57.474 50.000 0.00 0.00 0.00 2.59
1961 2034 1.537638 ACACAACACACGCAACTTGAA 59.462 42.857 0.00 0.00 0.00 2.69
1979 2052 7.504924 ACTTGAATTGATTCAGTCGGTTAAA 57.495 32.000 6.53 0.00 46.34 1.52
2021 2094 6.944234 ATTATGTGCCTTACTTCCTAAAGC 57.056 37.500 0.00 0.00 35.81 3.51
2145 2218 3.512154 TACCACCACGACTCCCCGT 62.512 63.158 0.00 0.00 44.43 5.28
2156 2229 1.479730 GACTCCCCGTAAAAGGTCGAT 59.520 52.381 0.00 0.00 0.00 3.59
2157 2230 1.479730 ACTCCCCGTAAAAGGTCGATC 59.520 52.381 0.00 0.00 0.00 3.69
2158 2231 1.755380 CTCCCCGTAAAAGGTCGATCT 59.245 52.381 0.00 0.00 0.00 2.75
2159 2232 1.753073 TCCCCGTAAAAGGTCGATCTC 59.247 52.381 0.00 0.00 0.00 2.75
2201 2274 3.878160 GCTGTGAGCTAGTTCCTACTT 57.122 47.619 3.94 0.00 38.45 2.24
2202 2275 3.776340 GCTGTGAGCTAGTTCCTACTTC 58.224 50.000 3.94 0.00 38.45 3.01
2203 2276 3.429684 GCTGTGAGCTAGTTCCTACTTCC 60.430 52.174 3.94 0.00 38.45 3.46
2204 2277 4.020543 CTGTGAGCTAGTTCCTACTTCCT 58.979 47.826 3.94 0.00 35.78 3.36
2205 2278 5.188988 TGTGAGCTAGTTCCTACTTCCTA 57.811 43.478 3.94 0.00 35.78 2.94
2339 2413 8.156994 TCGCATCTGATTGATTAATTTCATCA 57.843 30.769 0.00 0.00 32.05 3.07
2341 2415 8.688184 CGCATCTGATTGATTAATTTCATCAAC 58.312 33.333 12.59 8.90 42.17 3.18
2371 2445 0.615544 ATTTCCCTGTGCCCACATGG 60.616 55.000 14.29 14.29 45.02 3.66
2458 2532 6.214191 TGTTTTGTTTGGATCAGTTTGCTA 57.786 33.333 0.00 0.00 0.00 3.49
2719 2802 3.627395 AATAAGTCGATTCACCAGGCA 57.373 42.857 0.00 0.00 0.00 4.75
2828 2913 6.306643 TGTGGTATGTGGTTCTTCATGATA 57.693 37.500 0.00 0.00 0.00 2.15
2933 3022 5.066593 AGTTGATCTTGTCTTCCTTGGTTC 58.933 41.667 0.00 0.00 0.00 3.62
2974 3069 5.804639 TGTTGTTATAGTTGCTGGAGTCAT 58.195 37.500 0.00 0.00 0.00 3.06
3236 4221 0.457851 TTTTGGTGGCCACTCAAACG 59.542 50.000 33.70 0.00 34.03 3.60
3241 4226 0.316689 GTGGCCACTCAAACGAAACG 60.317 55.000 29.12 0.00 0.00 3.60
3378 4364 4.891756 GGCACTCACCACTAACTACCTATA 59.108 45.833 0.00 0.00 0.00 1.31
3436 4422 1.794512 GCATTGTTGTTGCCCGAAAT 58.205 45.000 0.00 0.00 33.95 2.17
3454 4440 4.506979 CGAAATAGAGTAGCCCCTCCTCTA 60.507 50.000 0.00 0.00 40.89 2.43
3472 4458 4.157840 CCTCTATTTTTGCAACCCTACCAC 59.842 45.833 0.00 0.00 0.00 4.16
3530 4516 3.260380 AGCTATTGTAGGGCAGATGCTAG 59.740 47.826 4.59 0.00 41.70 3.42
3618 4604 1.905637 TCTGCATCATGGCATGGATC 58.094 50.000 26.15 15.26 43.97 3.36
3698 4684 3.680490 TCGAGGTAAAAATGGTGCATCA 58.320 40.909 0.00 0.00 0.00 3.07
3715 4701 3.643237 CATCACCTCTCCCTACAAGGTA 58.357 50.000 0.00 0.00 41.48 3.08
3726 4712 8.906238 TCTCCCTACAAGGTATTAGTTTTAGT 57.094 34.615 0.00 0.00 31.93 2.24
3756 4742 1.473677 TGCATCATGGCTGTAAACTGC 59.526 47.619 3.60 3.60 39.66 4.40
3866 4852 7.800300 TTTGGCCCCTTTACATAAGTTTTAT 57.200 32.000 0.00 0.00 0.00 1.40
3946 4932 5.477984 TGAGAGCAGCCATCAATTTAGTTTT 59.522 36.000 0.00 0.00 0.00 2.43
4066 5359 3.654414 AGAGGCTGTTCTGAAACTAACG 58.346 45.455 0.00 0.00 36.30 3.18
4073 5367 7.822822 AGGCTGTTCTGAAACTAACGTATTTAT 59.177 33.333 0.00 0.00 36.30 1.40
4181 5475 4.500716 GGCTCAGCTAGAGTCCTTAATCAC 60.501 50.000 0.00 0.00 43.32 3.06
4294 5588 9.956720 CTACTTGTTCTTTTCAGTTCAAATGAT 57.043 29.630 0.00 0.00 0.00 2.45
4306 5600 7.209475 TCAGTTCAAATGATTGTTCCTTTTCC 58.791 34.615 0.00 0.00 37.79 3.13
4424 5718 9.793252 GAATTAAGCATATATTTTCGGCATGAT 57.207 29.630 0.00 0.00 0.00 2.45
4554 5848 1.298157 CTTTCTCGACATGGGCGCAA 61.298 55.000 10.83 0.00 0.00 4.85
4614 5910 1.620819 GCTCTTCAACCACTCAGAGGA 59.379 52.381 1.53 0.00 34.46 3.71
4671 5967 5.183530 AGATGATTGTCCAGGTGATTTCA 57.816 39.130 0.00 0.00 0.00 2.69
4786 6082 5.776173 AGATACATCTAGGGAAGTTGTCG 57.224 43.478 0.00 0.00 38.71 4.35
4787 6083 5.202004 AGATACATCTAGGGAAGTTGTCGT 58.798 41.667 0.00 0.00 38.71 4.34
4846 6142 6.072008 CCACCTTTCAATGATCATTGTGTGTA 60.072 38.462 35.74 20.92 46.15 2.90
4902 6200 2.093106 ACGTTGGTTTGGTTTGCACTA 58.907 42.857 0.00 0.00 0.00 2.74
4987 6289 3.482436 AGTAGCGTGGGAAACAAATGAA 58.518 40.909 0.00 0.00 0.00 2.57
4988 6290 4.079253 AGTAGCGTGGGAAACAAATGAAT 58.921 39.130 0.00 0.00 0.00 2.57
4989 6291 3.302365 AGCGTGGGAAACAAATGAATG 57.698 42.857 0.00 0.00 0.00 2.67
4990 6292 1.726248 GCGTGGGAAACAAATGAATGC 59.274 47.619 0.00 0.00 0.00 3.56
4991 6293 2.610232 GCGTGGGAAACAAATGAATGCT 60.610 45.455 0.00 0.00 0.00 3.79
4992 6294 3.366883 GCGTGGGAAACAAATGAATGCTA 60.367 43.478 0.00 0.00 0.00 3.49
4993 6295 4.804108 CGTGGGAAACAAATGAATGCTAA 58.196 39.130 0.00 0.00 0.00 3.09
4994 6296 5.410067 CGTGGGAAACAAATGAATGCTAAT 58.590 37.500 0.00 0.00 0.00 1.73
4995 6297 6.559810 CGTGGGAAACAAATGAATGCTAATA 58.440 36.000 0.00 0.00 0.00 0.98
4996 6298 6.692681 CGTGGGAAACAAATGAATGCTAATAG 59.307 38.462 0.00 0.00 0.00 1.73
4997 6299 7.547227 GTGGGAAACAAATGAATGCTAATAGT 58.453 34.615 0.00 0.00 0.00 2.12
4998 6300 8.682710 GTGGGAAACAAATGAATGCTAATAGTA 58.317 33.333 0.00 0.00 0.00 1.82
4999 6301 8.902806 TGGGAAACAAATGAATGCTAATAGTAG 58.097 33.333 0.00 0.00 0.00 2.57
5000 6302 8.903820 GGGAAACAAATGAATGCTAATAGTAGT 58.096 33.333 0.00 0.00 0.00 2.73
5018 6320 6.917217 AGTAGTTAGGTTAGTAGTAGCGTG 57.083 41.667 0.00 0.00 0.00 5.34
5019 6321 5.819901 AGTAGTTAGGTTAGTAGTAGCGTGG 59.180 44.000 0.00 0.00 0.00 4.94
5020 6322 3.950395 AGTTAGGTTAGTAGTAGCGTGGG 59.050 47.826 0.00 0.00 0.00 4.61
5021 6323 2.814805 AGGTTAGTAGTAGCGTGGGA 57.185 50.000 0.00 0.00 0.00 4.37
5022 6324 3.091633 AGGTTAGTAGTAGCGTGGGAA 57.908 47.619 0.00 0.00 0.00 3.97
5023 6325 3.434309 AGGTTAGTAGTAGCGTGGGAAA 58.566 45.455 0.00 0.00 0.00 3.13
5024 6326 4.028825 AGGTTAGTAGTAGCGTGGGAAAT 58.971 43.478 0.00 0.00 0.00 2.17
5025 6327 5.203528 AGGTTAGTAGTAGCGTGGGAAATA 58.796 41.667 0.00 0.00 0.00 1.40
5026 6328 5.658190 AGGTTAGTAGTAGCGTGGGAAATAA 59.342 40.000 0.00 0.00 0.00 1.40
5027 6329 5.981915 GGTTAGTAGTAGCGTGGGAAATAAG 59.018 44.000 0.00 0.00 0.00 1.73
5028 6330 6.183360 GGTTAGTAGTAGCGTGGGAAATAAGA 60.183 42.308 0.00 0.00 0.00 2.10
5029 6331 5.927281 AGTAGTAGCGTGGGAAATAAGAA 57.073 39.130 0.00 0.00 0.00 2.52
5030 6332 6.290294 AGTAGTAGCGTGGGAAATAAGAAA 57.710 37.500 0.00 0.00 0.00 2.52
5031 6333 6.885922 AGTAGTAGCGTGGGAAATAAGAAAT 58.114 36.000 0.00 0.00 0.00 2.17
5032 6334 6.761714 AGTAGTAGCGTGGGAAATAAGAAATG 59.238 38.462 0.00 0.00 0.00 2.32
5033 6335 5.741011 AGTAGCGTGGGAAATAAGAAATGA 58.259 37.500 0.00 0.00 0.00 2.57
5067 6369 4.593956 AGTTAGGTTAGTAGTAGCGTGGT 58.406 43.478 0.00 0.00 0.00 4.16
5138 6487 5.574443 CACCCGTGCTACTACTAACTTTTAC 59.426 44.000 0.00 0.00 0.00 2.01
5208 6557 4.207281 CCGCGCTGCTAGTAGCCA 62.207 66.667 24.74 6.87 41.51 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.330192 TGGTGTGGCCAGTGAAGT 58.670 55.556 5.11 0.00 43.61 3.01
9 10 3.646715 GGGCTAGTGGTGTGGCCA 61.647 66.667 0.00 0.00 45.68 5.36
10 11 4.426313 GGGGCTAGTGGTGTGGCC 62.426 72.222 0.00 0.00 44.43 5.36
11 12 3.646715 TGGGGCTAGTGGTGTGGC 61.647 66.667 0.00 0.00 0.00 5.01
12 13 2.351276 GTGGGGCTAGTGGTGTGG 59.649 66.667 0.00 0.00 0.00 4.17
13 14 2.351276 GGTGGGGCTAGTGGTGTG 59.649 66.667 0.00 0.00 0.00 3.82
14 15 2.122144 TGGTGGGGCTAGTGGTGT 60.122 61.111 0.00 0.00 0.00 4.16
15 16 2.351276 GTGGTGGGGCTAGTGGTG 59.649 66.667 0.00 0.00 0.00 4.17
16 17 2.122144 TGTGGTGGGGCTAGTGGT 60.122 61.111 0.00 0.00 0.00 4.16
17 18 2.351276 GTGTGGTGGGGCTAGTGG 59.649 66.667 0.00 0.00 0.00 4.00
18 19 1.003355 CTGTGTGGTGGGGCTAGTG 60.003 63.158 0.00 0.00 0.00 2.74
19 20 2.224159 CCTGTGTGGTGGGGCTAGT 61.224 63.158 0.00 0.00 0.00 2.57
20 21 1.918293 TCCTGTGTGGTGGGGCTAG 60.918 63.158 0.00 0.00 37.07 3.42
21 22 2.205749 TCCTGTGTGGTGGGGCTA 59.794 61.111 0.00 0.00 37.07 3.93
22 23 3.570212 GTCCTGTGTGGTGGGGCT 61.570 66.667 0.00 0.00 37.07 5.19
23 24 4.660938 GGTCCTGTGTGGTGGGGC 62.661 72.222 0.00 0.00 37.07 5.80
24 25 2.854032 AGGTCCTGTGTGGTGGGG 60.854 66.667 0.00 0.00 37.07 4.96
25 26 2.431683 CAGGTCCTGTGTGGTGGG 59.568 66.667 11.09 0.00 37.07 4.61
26 27 2.281761 GCAGGTCCTGTGTGGTGG 60.282 66.667 20.24 0.00 37.07 4.61
27 28 1.893808 GTGCAGGTCCTGTGTGGTG 60.894 63.158 20.24 0.00 37.07 4.17
28 29 2.044806 GAGTGCAGGTCCTGTGTGGT 62.045 60.000 20.24 1.20 37.07 4.16
29 30 1.302033 GAGTGCAGGTCCTGTGTGG 60.302 63.158 20.24 0.00 33.43 4.17
30 31 1.302033 GGAGTGCAGGTCCTGTGTG 60.302 63.158 20.24 0.00 33.43 3.82
31 32 1.762522 CTGGAGTGCAGGTCCTGTGT 61.763 60.000 20.24 5.17 34.86 3.72
32 33 1.004080 CTGGAGTGCAGGTCCTGTG 60.004 63.158 20.24 0.00 34.86 3.66
33 34 2.888447 GCTGGAGTGCAGGTCCTGT 61.888 63.158 20.24 0.00 35.87 4.00
34 35 2.046507 GCTGGAGTGCAGGTCCTG 60.047 66.667 15.15 15.15 36.39 3.86
35 36 1.708993 TTTGCTGGAGTGCAGGTCCT 61.709 55.000 14.04 0.00 44.27 3.85
36 37 0.823356 TTTTGCTGGAGTGCAGGTCC 60.823 55.000 14.04 7.95 44.27 4.46
37 38 0.595095 CTTTTGCTGGAGTGCAGGTC 59.405 55.000 14.04 0.00 44.27 3.85
38 39 0.825010 CCTTTTGCTGGAGTGCAGGT 60.825 55.000 14.04 0.00 44.27 4.00
39 40 0.825010 ACCTTTTGCTGGAGTGCAGG 60.825 55.000 14.04 0.00 44.27 4.85
40 41 1.896220 TACCTTTTGCTGGAGTGCAG 58.104 50.000 7.39 7.39 44.27 4.41
41 42 2.584835 ATACCTTTTGCTGGAGTGCA 57.415 45.000 0.00 0.00 41.65 4.57
42 43 2.683362 GGTATACCTTTTGCTGGAGTGC 59.317 50.000 15.09 0.00 0.00 4.40
43 44 2.936498 CGGTATACCTTTTGCTGGAGTG 59.064 50.000 19.68 0.00 0.00 3.51
44 45 2.835764 TCGGTATACCTTTTGCTGGAGT 59.164 45.455 19.68 0.00 0.00 3.85
45 46 3.536956 TCGGTATACCTTTTGCTGGAG 57.463 47.619 19.68 0.34 0.00 3.86
46 47 4.497291 AATCGGTATACCTTTTGCTGGA 57.503 40.909 19.68 7.27 0.00 3.86
47 48 4.638421 TGAAATCGGTATACCTTTTGCTGG 59.362 41.667 19.68 1.78 0.00 4.85
48 49 5.811399 TGAAATCGGTATACCTTTTGCTG 57.189 39.130 19.68 2.51 0.00 4.41
49 50 7.257722 CAAATGAAATCGGTATACCTTTTGCT 58.742 34.615 19.68 6.38 0.00 3.91
50 51 6.019881 GCAAATGAAATCGGTATACCTTTTGC 60.020 38.462 19.68 19.89 0.00 3.68
51 52 6.475402 GGCAAATGAAATCGGTATACCTTTTG 59.525 38.462 19.68 15.64 0.00 2.44
52 53 6.153680 TGGCAAATGAAATCGGTATACCTTTT 59.846 34.615 19.68 17.39 0.00 2.27
53 54 5.654650 TGGCAAATGAAATCGGTATACCTTT 59.345 36.000 19.68 13.73 0.00 3.11
54 55 5.197451 TGGCAAATGAAATCGGTATACCTT 58.803 37.500 19.68 7.44 0.00 3.50
55 56 4.787551 TGGCAAATGAAATCGGTATACCT 58.212 39.130 19.68 0.28 0.00 3.08
56 57 5.705609 ATGGCAAATGAAATCGGTATACC 57.294 39.130 12.27 12.27 0.00 2.73
57 58 6.072728 TGCTATGGCAAATGAAATCGGTATAC 60.073 38.462 0.00 0.00 46.36 1.47
58 59 6.000840 TGCTATGGCAAATGAAATCGGTATA 58.999 36.000 0.00 0.00 46.36 1.47
59 60 4.826733 TGCTATGGCAAATGAAATCGGTAT 59.173 37.500 0.00 0.00 46.36 2.73
60 61 4.203226 TGCTATGGCAAATGAAATCGGTA 58.797 39.130 0.00 0.00 46.36 4.02
61 62 3.023119 TGCTATGGCAAATGAAATCGGT 58.977 40.909 0.00 0.00 46.36 4.69
62 63 3.713858 TGCTATGGCAAATGAAATCGG 57.286 42.857 0.00 0.00 46.36 4.18
80 81 0.250295 TTCTGTGGTACAGCTGGTGC 60.250 55.000 19.93 7.27 45.54 5.01
81 82 2.254546 TTTCTGTGGTACAGCTGGTG 57.745 50.000 19.93 5.12 45.54 4.17
82 83 3.290948 TTTTTCTGTGGTACAGCTGGT 57.709 42.857 19.93 6.35 45.54 4.00
83 84 3.820467 TGATTTTTCTGTGGTACAGCTGG 59.180 43.478 19.93 0.00 45.54 4.85
84 85 4.275689 TGTGATTTTTCTGTGGTACAGCTG 59.724 41.667 13.48 13.48 45.54 4.24
85 86 4.275936 GTGTGATTTTTCTGTGGTACAGCT 59.724 41.667 4.14 0.00 45.54 4.24
86 87 4.275936 AGTGTGATTTTTCTGTGGTACAGC 59.724 41.667 4.14 0.00 45.54 4.40
88 89 4.819630 GGAGTGTGATTTTTCTGTGGTACA 59.180 41.667 0.00 0.00 0.00 2.90
89 90 4.819630 TGGAGTGTGATTTTTCTGTGGTAC 59.180 41.667 0.00 0.00 0.00 3.34
90 91 5.042463 TGGAGTGTGATTTTTCTGTGGTA 57.958 39.130 0.00 0.00 0.00 3.25
91 92 3.885297 CTGGAGTGTGATTTTTCTGTGGT 59.115 43.478 0.00 0.00 0.00 4.16
92 93 3.304928 GCTGGAGTGTGATTTTTCTGTGG 60.305 47.826 0.00 0.00 0.00 4.17
93 94 3.316029 TGCTGGAGTGTGATTTTTCTGTG 59.684 43.478 0.00 0.00 0.00 3.66
94 95 3.554934 TGCTGGAGTGTGATTTTTCTGT 58.445 40.909 0.00 0.00 0.00 3.41
95 96 4.572985 TTGCTGGAGTGTGATTTTTCTG 57.427 40.909 0.00 0.00 0.00 3.02
96 97 5.596836 TTTTGCTGGAGTGTGATTTTTCT 57.403 34.783 0.00 0.00 0.00 2.52
97 98 5.812127 ACTTTTTGCTGGAGTGTGATTTTTC 59.188 36.000 0.00 0.00 0.00 2.29
98 99 5.733676 ACTTTTTGCTGGAGTGTGATTTTT 58.266 33.333 0.00 0.00 0.00 1.94
99 100 5.343307 ACTTTTTGCTGGAGTGTGATTTT 57.657 34.783 0.00 0.00 0.00 1.82
100 101 5.359576 TGTACTTTTTGCTGGAGTGTGATTT 59.640 36.000 0.00 0.00 0.00 2.17
101 102 4.887071 TGTACTTTTTGCTGGAGTGTGATT 59.113 37.500 0.00 0.00 0.00 2.57
102 103 4.460263 TGTACTTTTTGCTGGAGTGTGAT 58.540 39.130 0.00 0.00 0.00 3.06
103 104 3.876914 CTGTACTTTTTGCTGGAGTGTGA 59.123 43.478 0.00 0.00 0.00 3.58
104 105 3.548818 GCTGTACTTTTTGCTGGAGTGTG 60.549 47.826 0.00 0.00 0.00 3.82
105 106 2.618709 GCTGTACTTTTTGCTGGAGTGT 59.381 45.455 0.00 0.00 0.00 3.55
106 107 2.618241 TGCTGTACTTTTTGCTGGAGTG 59.382 45.455 0.00 0.00 0.00 3.51
107 108 2.930950 TGCTGTACTTTTTGCTGGAGT 58.069 42.857 0.00 0.00 0.00 3.85
108 109 3.316308 ACTTGCTGTACTTTTTGCTGGAG 59.684 43.478 0.00 0.00 0.00 3.86
109 110 3.287222 ACTTGCTGTACTTTTTGCTGGA 58.713 40.909 0.00 0.00 0.00 3.86
110 111 3.550842 GGACTTGCTGTACTTTTTGCTGG 60.551 47.826 0.00 0.00 0.00 4.85
111 112 3.066621 TGGACTTGCTGTACTTTTTGCTG 59.933 43.478 0.00 0.00 0.00 4.41
112 113 3.066760 GTGGACTTGCTGTACTTTTTGCT 59.933 43.478 0.00 0.00 0.00 3.91
113 114 3.372060 GTGGACTTGCTGTACTTTTTGC 58.628 45.455 0.00 0.00 0.00 3.68
114 115 3.548014 CGGTGGACTTGCTGTACTTTTTG 60.548 47.826 0.00 0.00 0.00 2.44
115 116 2.616842 CGGTGGACTTGCTGTACTTTTT 59.383 45.455 0.00 0.00 0.00 1.94
116 117 2.218603 CGGTGGACTTGCTGTACTTTT 58.781 47.619 0.00 0.00 0.00 2.27
117 118 1.542547 CCGGTGGACTTGCTGTACTTT 60.543 52.381 0.00 0.00 0.00 2.66
118 119 0.034896 CCGGTGGACTTGCTGTACTT 59.965 55.000 0.00 0.00 0.00 2.24
119 120 1.671742 CCGGTGGACTTGCTGTACT 59.328 57.895 0.00 0.00 0.00 2.73
120 121 2.033194 GCCGGTGGACTTGCTGTAC 61.033 63.158 1.90 0.00 0.00 2.90
121 122 2.345991 GCCGGTGGACTTGCTGTA 59.654 61.111 1.90 0.00 0.00 2.74
122 123 4.643387 GGCCGGTGGACTTGCTGT 62.643 66.667 1.90 0.00 0.00 4.40
126 127 2.742372 CTTCGGCCGGTGGACTTG 60.742 66.667 27.83 2.84 0.00 3.16
127 128 2.920912 TCTTCGGCCGGTGGACTT 60.921 61.111 27.83 0.00 0.00 3.01
128 129 3.692406 GTCTTCGGCCGGTGGACT 61.692 66.667 27.83 0.00 0.00 3.85
129 130 4.754667 GGTCTTCGGCCGGTGGAC 62.755 72.222 27.83 26.67 0.00 4.02
130 131 2.866523 ATAGGTCTTCGGCCGGTGGA 62.867 60.000 27.83 17.71 0.00 4.02
131 132 2.365095 GATAGGTCTTCGGCCGGTGG 62.365 65.000 27.83 15.57 0.00 4.61
132 133 1.067582 GATAGGTCTTCGGCCGGTG 59.932 63.158 27.83 18.35 0.00 4.94
133 134 2.132352 GGATAGGTCTTCGGCCGGT 61.132 63.158 27.83 5.80 0.00 5.28
134 135 2.735237 GGATAGGTCTTCGGCCGG 59.265 66.667 27.83 10.69 0.00 6.13
135 136 1.682451 TTGGGATAGGTCTTCGGCCG 61.682 60.000 22.12 22.12 0.00 6.13
136 137 0.179054 GTTGGGATAGGTCTTCGGCC 60.179 60.000 0.00 0.00 0.00 6.13
137 138 0.831307 AGTTGGGATAGGTCTTCGGC 59.169 55.000 0.00 0.00 0.00 5.54
138 139 3.028850 TGTAGTTGGGATAGGTCTTCGG 58.971 50.000 0.00 0.00 0.00 4.30
139 140 3.952323 TCTGTAGTTGGGATAGGTCTTCG 59.048 47.826 0.00 0.00 0.00 3.79
140 141 5.068067 GTCTCTGTAGTTGGGATAGGTCTTC 59.932 48.000 0.00 0.00 0.00 2.87
141 142 4.957327 GTCTCTGTAGTTGGGATAGGTCTT 59.043 45.833 0.00 0.00 0.00 3.01
142 143 4.538738 GTCTCTGTAGTTGGGATAGGTCT 58.461 47.826 0.00 0.00 0.00 3.85
143 144 3.315749 CGTCTCTGTAGTTGGGATAGGTC 59.684 52.174 0.00 0.00 0.00 3.85
144 145 3.288964 CGTCTCTGTAGTTGGGATAGGT 58.711 50.000 0.00 0.00 0.00 3.08
145 146 2.623889 CCGTCTCTGTAGTTGGGATAGG 59.376 54.545 0.00 0.00 0.00 2.57
146 147 2.034812 GCCGTCTCTGTAGTTGGGATAG 59.965 54.545 0.00 0.00 0.00 2.08
147 148 2.029623 GCCGTCTCTGTAGTTGGGATA 58.970 52.381 0.00 0.00 0.00 2.59
148 149 0.824759 GCCGTCTCTGTAGTTGGGAT 59.175 55.000 0.00 0.00 0.00 3.85
149 150 1.255667 GGCCGTCTCTGTAGTTGGGA 61.256 60.000 0.00 0.00 0.00 4.37
150 151 1.218316 GGCCGTCTCTGTAGTTGGG 59.782 63.158 0.00 0.00 0.00 4.12
151 152 0.320374 TTGGCCGTCTCTGTAGTTGG 59.680 55.000 0.00 0.00 0.00 3.77
152 153 2.386661 ATTGGCCGTCTCTGTAGTTG 57.613 50.000 0.00 0.00 0.00 3.16
153 154 2.354805 GGAATTGGCCGTCTCTGTAGTT 60.355 50.000 0.00 0.00 0.00 2.24
154 155 1.207329 GGAATTGGCCGTCTCTGTAGT 59.793 52.381 0.00 0.00 0.00 2.73
155 156 1.482593 AGGAATTGGCCGTCTCTGTAG 59.517 52.381 0.00 0.00 0.00 2.74
156 157 1.207089 CAGGAATTGGCCGTCTCTGTA 59.793 52.381 0.00 0.00 0.00 2.74
157 158 0.036010 CAGGAATTGGCCGTCTCTGT 60.036 55.000 0.00 0.00 0.00 3.41
158 159 1.372087 GCAGGAATTGGCCGTCTCTG 61.372 60.000 0.00 3.38 0.00 3.35
159 160 1.078143 GCAGGAATTGGCCGTCTCT 60.078 57.895 0.00 0.00 0.00 3.10
160 161 1.372087 CTGCAGGAATTGGCCGTCTC 61.372 60.000 5.57 0.00 0.00 3.36
161 162 1.377725 CTGCAGGAATTGGCCGTCT 60.378 57.895 5.57 0.00 0.00 4.18
162 163 0.749454 ATCTGCAGGAATTGGCCGTC 60.749 55.000 15.13 0.00 0.00 4.79
163 164 0.323725 AATCTGCAGGAATTGGCCGT 60.324 50.000 15.13 0.00 0.00 5.68
164 165 0.101759 CAATCTGCAGGAATTGGCCG 59.898 55.000 15.13 0.00 0.00 6.13
165 166 0.462789 CCAATCTGCAGGAATTGGCC 59.537 55.000 25.84 0.00 37.36 5.36
166 167 1.477553 TCCAATCTGCAGGAATTGGC 58.522 50.000 29.63 0.00 42.32 4.52
167 168 2.167075 GGTTCCAATCTGCAGGAATTGG 59.833 50.000 29.00 29.00 44.98 3.16
168 169 2.167075 GGGTTCCAATCTGCAGGAATTG 59.833 50.000 15.13 16.43 44.98 2.32
169 170 2.460669 GGGTTCCAATCTGCAGGAATT 58.539 47.619 15.13 4.17 44.98 2.17
170 171 1.342374 GGGGTTCCAATCTGCAGGAAT 60.342 52.381 15.13 0.00 44.98 3.01
171 172 0.039618 GGGGTTCCAATCTGCAGGAA 59.960 55.000 15.13 7.52 41.41 3.36
172 173 1.139498 TGGGGTTCCAATCTGCAGGA 61.139 55.000 15.13 0.04 40.73 3.86
173 174 1.383799 TGGGGTTCCAATCTGCAGG 59.616 57.895 15.13 0.00 40.73 4.85
184 185 5.422012 AGTGTGAATAAATGGAATGGGGTTC 59.578 40.000 0.00 0.00 36.04 3.62
185 186 5.341169 AGTGTGAATAAATGGAATGGGGTT 58.659 37.500 0.00 0.00 0.00 4.11
186 187 4.946646 AGTGTGAATAAATGGAATGGGGT 58.053 39.130 0.00 0.00 0.00 4.95
187 188 5.937975 AAGTGTGAATAAATGGAATGGGG 57.062 39.130 0.00 0.00 0.00 4.96
188 189 9.717942 TTTTAAAGTGTGAATAAATGGAATGGG 57.282 29.630 0.00 0.00 0.00 4.00
200 201 8.947055 AAAGCATTGTCTTTTAAAGTGTGAAT 57.053 26.923 4.53 0.00 32.78 2.57
201 202 8.031864 TGAAAGCATTGTCTTTTAAAGTGTGAA 58.968 29.630 4.53 0.00 36.50 3.18
202 203 7.542890 TGAAAGCATTGTCTTTTAAAGTGTGA 58.457 30.769 4.53 0.00 36.50 3.58
203 204 7.754069 TGAAAGCATTGTCTTTTAAAGTGTG 57.246 32.000 4.53 1.87 36.50 3.82
204 205 8.819974 CATTGAAAGCATTGTCTTTTAAAGTGT 58.180 29.630 4.53 0.00 35.91 3.55
205 206 8.819974 ACATTGAAAGCATTGTCTTTTAAAGTG 58.180 29.630 4.53 10.63 34.49 3.16
206 207 8.947055 ACATTGAAAGCATTGTCTTTTAAAGT 57.053 26.923 4.53 10.93 35.91 2.66
207 208 9.640974 CAACATTGAAAGCATTGTCTTTTAAAG 57.359 29.630 0.00 0.00 37.56 1.85
208 209 9.160496 ACAACATTGAAAGCATTGTCTTTTAAA 57.840 25.926 11.66 8.58 37.56 1.52
209 210 8.715191 ACAACATTGAAAGCATTGTCTTTTAA 57.285 26.923 0.00 10.68 37.56 1.52
210 211 8.715191 AACAACATTGAAAGCATTGTCTTTTA 57.285 26.923 0.00 2.35 37.56 1.52
211 212 7.614124 AACAACATTGAAAGCATTGTCTTTT 57.386 28.000 0.00 0.00 37.56 2.27
212 213 7.439056 CCTAACAACATTGAAAGCATTGTCTTT 59.561 33.333 0.00 5.98 37.56 2.52
213 214 6.925165 CCTAACAACATTGAAAGCATTGTCTT 59.075 34.615 0.00 0.00 37.56 3.01
214 215 6.449698 CCTAACAACATTGAAAGCATTGTCT 58.550 36.000 0.00 0.00 37.56 3.41
215 216 5.634859 CCCTAACAACATTGAAAGCATTGTC 59.365 40.000 0.00 0.00 37.56 3.18
216 217 5.304101 TCCCTAACAACATTGAAAGCATTGT 59.696 36.000 0.00 0.00 39.54 2.71
217 218 5.634859 GTCCCTAACAACATTGAAAGCATTG 59.365 40.000 0.00 0.00 0.00 2.82
218 219 5.539955 AGTCCCTAACAACATTGAAAGCATT 59.460 36.000 0.00 0.00 0.00 3.56
219 220 5.079643 AGTCCCTAACAACATTGAAAGCAT 58.920 37.500 0.00 0.00 0.00 3.79
220 221 4.469657 AGTCCCTAACAACATTGAAAGCA 58.530 39.130 0.00 0.00 0.00 3.91
221 222 5.390567 CGTAGTCCCTAACAACATTGAAAGC 60.391 44.000 0.00 0.00 0.00 3.51
222 223 5.699458 ACGTAGTCCCTAACAACATTGAAAG 59.301 40.000 0.00 0.00 29.74 2.62
223 224 5.467399 CACGTAGTCCCTAACAACATTGAAA 59.533 40.000 0.00 0.00 41.61 2.69
224 225 4.992319 CACGTAGTCCCTAACAACATTGAA 59.008 41.667 0.00 0.00 41.61 2.69
225 226 4.562082 CACGTAGTCCCTAACAACATTGA 58.438 43.478 0.00 0.00 41.61 2.57
226 227 3.124636 GCACGTAGTCCCTAACAACATTG 59.875 47.826 0.00 0.00 41.61 2.82
227 228 3.244284 TGCACGTAGTCCCTAACAACATT 60.244 43.478 0.00 0.00 41.61 2.71
228 229 2.300723 TGCACGTAGTCCCTAACAACAT 59.699 45.455 0.00 0.00 41.61 2.71
229 230 1.687660 TGCACGTAGTCCCTAACAACA 59.312 47.619 0.00 0.00 41.61 3.33
230 231 2.443887 TGCACGTAGTCCCTAACAAC 57.556 50.000 0.00 0.00 41.61 3.32
231 232 6.659745 ATATATGCACGTAGTCCCTAACAA 57.340 37.500 0.00 0.00 41.61 2.83
232 233 6.294899 GGAATATATGCACGTAGTCCCTAACA 60.295 42.308 13.08 0.00 41.61 2.41
233 234 6.098017 GGAATATATGCACGTAGTCCCTAAC 58.902 44.000 13.08 0.00 41.61 2.34
234 235 5.186409 GGGAATATATGCACGTAGTCCCTAA 59.814 44.000 26.55 0.00 46.57 2.69
235 236 4.708421 GGGAATATATGCACGTAGTCCCTA 59.292 45.833 26.55 0.26 46.57 3.53
236 237 3.514309 GGGAATATATGCACGTAGTCCCT 59.486 47.826 26.55 0.00 46.57 4.20
237 238 3.858247 GGGAATATATGCACGTAGTCCC 58.142 50.000 22.49 22.49 44.89 4.46
238 239 4.530710 TGGGAATATATGCACGTAGTCC 57.469 45.455 14.90 14.90 41.61 3.85
239 240 5.720202 TGATGGGAATATATGCACGTAGTC 58.280 41.667 0.00 0.00 41.61 2.59
240 241 6.853377 CCATGATGGGAATATATGCACGTAGT 60.853 42.308 2.79 0.00 35.25 2.73
241 242 5.525012 CCATGATGGGAATATATGCACGTAG 59.475 44.000 2.79 0.00 32.67 3.51
242 243 5.427378 CCATGATGGGAATATATGCACGTA 58.573 41.667 2.79 0.00 32.67 3.57
243 244 4.264253 CCATGATGGGAATATATGCACGT 58.736 43.478 2.79 0.00 32.67 4.49
244 245 4.888038 CCATGATGGGAATATATGCACG 57.112 45.455 2.79 0.00 32.67 5.34
257 258 5.475909 CCTCACAATAATCTTCCCATGATGG 59.524 44.000 3.98 3.98 37.25 3.51
258 259 6.206243 GTCCTCACAATAATCTTCCCATGATG 59.794 42.308 0.00 0.00 0.00 3.07
259 260 6.126390 TGTCCTCACAATAATCTTCCCATGAT 60.126 38.462 0.00 0.00 0.00 2.45
260 261 5.191522 TGTCCTCACAATAATCTTCCCATGA 59.808 40.000 0.00 0.00 0.00 3.07
261 262 5.439721 TGTCCTCACAATAATCTTCCCATG 58.560 41.667 0.00 0.00 0.00 3.66
262 263 5.715439 TGTCCTCACAATAATCTTCCCAT 57.285 39.130 0.00 0.00 0.00 4.00
263 264 5.512942 TTGTCCTCACAATAATCTTCCCA 57.487 39.130 0.00 0.00 37.61 4.37
264 265 6.180472 TCTTTGTCCTCACAATAATCTTCCC 58.820 40.000 0.00 0.00 42.28 3.97
265 266 7.174946 TGTTCTTTGTCCTCACAATAATCTTCC 59.825 37.037 0.00 0.00 42.28 3.46
266 267 8.099364 TGTTCTTTGTCCTCACAATAATCTTC 57.901 34.615 0.00 0.00 42.28 2.87
267 268 8.641498 ATGTTCTTTGTCCTCACAATAATCTT 57.359 30.769 0.00 0.00 42.28 2.40
268 269 8.641498 AATGTTCTTTGTCCTCACAATAATCT 57.359 30.769 0.00 0.00 42.28 2.40
269 270 9.696917 AAAATGTTCTTTGTCCTCACAATAATC 57.303 29.630 0.00 0.00 42.28 1.75
270 271 9.480053 CAAAATGTTCTTTGTCCTCACAATAAT 57.520 29.630 0.00 0.00 42.28 1.28
271 272 8.690884 TCAAAATGTTCTTTGTCCTCACAATAA 58.309 29.630 0.00 0.00 42.28 1.40
272 273 8.134895 GTCAAAATGTTCTTTGTCCTCACAATA 58.865 33.333 0.00 0.00 42.28 1.90
273 274 6.980397 GTCAAAATGTTCTTTGTCCTCACAAT 59.020 34.615 0.00 0.00 42.28 2.71
274 275 6.071672 TGTCAAAATGTTCTTTGTCCTCACAA 60.072 34.615 0.00 0.00 40.97 3.33
275 276 5.417266 TGTCAAAATGTTCTTTGTCCTCACA 59.583 36.000 0.00 0.00 37.52 3.58
276 277 5.890334 TGTCAAAATGTTCTTTGTCCTCAC 58.110 37.500 0.00 0.00 37.52 3.51
277 278 6.547141 AGATGTCAAAATGTTCTTTGTCCTCA 59.453 34.615 0.00 0.00 37.52 3.86
278 279 6.974965 AGATGTCAAAATGTTCTTTGTCCTC 58.025 36.000 0.00 0.00 37.52 3.71
279 280 6.966534 AGATGTCAAAATGTTCTTTGTCCT 57.033 33.333 0.00 0.00 37.52 3.85
280 281 6.642540 GGAAGATGTCAAAATGTTCTTTGTCC 59.357 38.462 0.00 0.00 37.52 4.02
281 282 7.380602 CAGGAAGATGTCAAAATGTTCTTTGTC 59.619 37.037 0.00 0.00 37.52 3.18
282 283 7.147846 ACAGGAAGATGTCAAAATGTTCTTTGT 60.148 33.333 0.00 0.00 37.52 2.83
283 284 7.205297 ACAGGAAGATGTCAAAATGTTCTTTG 58.795 34.615 0.00 0.00 37.59 2.77
284 285 7.352079 ACAGGAAGATGTCAAAATGTTCTTT 57.648 32.000 0.00 0.00 32.03 2.52
285 286 6.966534 ACAGGAAGATGTCAAAATGTTCTT 57.033 33.333 0.00 0.00 32.03 2.52
297 298 3.926616 CGTAAGTTGGACAGGAAGATGT 58.073 45.455 0.00 0.00 35.68 3.06
313 314 8.487970 CCATGAATAATAGCACTTACACGTAAG 58.512 37.037 14.04 14.04 45.95 2.34
314 315 7.982919 ACCATGAATAATAGCACTTACACGTAA 59.017 33.333 0.00 0.00 0.00 3.18
315 316 7.494211 ACCATGAATAATAGCACTTACACGTA 58.506 34.615 0.00 0.00 0.00 3.57
316 317 6.346096 ACCATGAATAATAGCACTTACACGT 58.654 36.000 0.00 0.00 0.00 4.49
317 318 6.844696 ACCATGAATAATAGCACTTACACG 57.155 37.500 0.00 0.00 0.00 4.49
332 333 9.271828 GAAAACAGGAAAACAATAACCATGAAT 57.728 29.630 0.00 0.00 0.00 2.57
333 334 8.482128 AGAAAACAGGAAAACAATAACCATGAA 58.518 29.630 0.00 0.00 0.00 2.57
334 335 7.925483 CAGAAAACAGGAAAACAATAACCATGA 59.075 33.333 0.00 0.00 0.00 3.07
335 336 7.307337 GCAGAAAACAGGAAAACAATAACCATG 60.307 37.037 0.00 0.00 0.00 3.66
336 337 6.705825 GCAGAAAACAGGAAAACAATAACCAT 59.294 34.615 0.00 0.00 0.00 3.55
337 338 6.045955 GCAGAAAACAGGAAAACAATAACCA 58.954 36.000 0.00 0.00 0.00 3.67
338 339 6.200854 CAGCAGAAAACAGGAAAACAATAACC 59.799 38.462 0.00 0.00 0.00 2.85
339 340 6.978080 TCAGCAGAAAACAGGAAAACAATAAC 59.022 34.615 0.00 0.00 0.00 1.89
340 341 7.106439 TCAGCAGAAAACAGGAAAACAATAA 57.894 32.000 0.00 0.00 0.00 1.40
341 342 6.707440 TCAGCAGAAAACAGGAAAACAATA 57.293 33.333 0.00 0.00 0.00 1.90
342 343 5.596836 TCAGCAGAAAACAGGAAAACAAT 57.403 34.783 0.00 0.00 0.00 2.71
343 344 5.596836 ATCAGCAGAAAACAGGAAAACAA 57.403 34.783 0.00 0.00 0.00 2.83
344 345 5.126869 TCAATCAGCAGAAAACAGGAAAACA 59.873 36.000 0.00 0.00 0.00 2.83
345 346 5.591099 TCAATCAGCAGAAAACAGGAAAAC 58.409 37.500 0.00 0.00 0.00 2.43
346 347 5.850557 TCAATCAGCAGAAAACAGGAAAA 57.149 34.783 0.00 0.00 0.00 2.29
347 348 5.126869 TGTTCAATCAGCAGAAAACAGGAAA 59.873 36.000 2.37 0.00 0.00 3.13
348 349 4.644234 TGTTCAATCAGCAGAAAACAGGAA 59.356 37.500 2.37 0.00 0.00 3.36
349 350 4.036734 GTGTTCAATCAGCAGAAAACAGGA 59.963 41.667 5.66 0.00 33.24 3.86
350 351 4.202040 TGTGTTCAATCAGCAGAAAACAGG 60.202 41.667 5.66 0.00 37.13 4.00
351 352 4.923893 TGTGTTCAATCAGCAGAAAACAG 58.076 39.130 5.66 0.00 37.13 3.16
352 353 4.979943 TGTGTTCAATCAGCAGAAAACA 57.020 36.364 0.00 0.00 39.10 2.83
353 354 5.522456 TGATGTGTTCAATCAGCAGAAAAC 58.478 37.500 0.00 0.00 33.54 2.43
354 355 5.771153 TGATGTGTTCAATCAGCAGAAAA 57.229 34.783 0.00 0.00 0.00 2.29
355 356 5.771153 TTGATGTGTTCAATCAGCAGAAA 57.229 34.783 0.00 0.00 39.44 2.52
366 367 9.838975 GTGTAATGTAAATCATTGATGTGTTCA 57.161 29.630 0.00 0.00 45.14 3.18
380 381 9.392259 GCTTTTCCCTAGTAGTGTAATGTAAAT 57.608 33.333 0.00 0.00 0.00 1.40
381 382 8.599792 AGCTTTTCCCTAGTAGTGTAATGTAAA 58.400 33.333 0.00 0.00 0.00 2.01
382 383 8.142485 AGCTTTTCCCTAGTAGTGTAATGTAA 57.858 34.615 0.00 0.00 0.00 2.41
383 384 7.729124 AGCTTTTCCCTAGTAGTGTAATGTA 57.271 36.000 0.00 0.00 0.00 2.29
384 385 6.622427 AGCTTTTCCCTAGTAGTGTAATGT 57.378 37.500 0.00 0.00 0.00 2.71
387 388 9.258629 TGTATAAGCTTTTCCCTAGTAGTGTAA 57.741 33.333 3.20 0.00 0.00 2.41
388 389 8.689972 GTGTATAAGCTTTTCCCTAGTAGTGTA 58.310 37.037 3.20 0.00 0.00 2.90
474 475 4.092279 AGTAGTAGCGAGGGGTAAAAACT 58.908 43.478 0.00 0.00 0.00 2.66
586 589 5.291905 AGTAGCGCAGGTTTATAATCCTT 57.708 39.130 11.47 1.94 40.68 3.36
628 631 2.352422 GTGGGCATCTGACCTGCA 59.648 61.111 3.24 0.00 45.91 4.41
704 709 0.695924 CAATGGTGGACTGGTGGGTA 59.304 55.000 0.00 0.00 0.00 3.69
957 1010 0.178998 CTCTTACCCTCCCGGATCGA 60.179 60.000 0.73 0.00 34.64 3.59
1014 1067 2.528818 CCTGCTCTTCCCCACCACA 61.529 63.158 0.00 0.00 0.00 4.17
1191 1247 6.874278 TCAACCTATATATCATCACAGGGG 57.126 41.667 2.74 0.00 0.00 4.79
1212 1268 3.394274 TCTCCACCTTGGTTTCTTCATCA 59.606 43.478 0.00 0.00 39.03 3.07
1221 1277 0.111253 CTGCCTTCTCCACCTTGGTT 59.889 55.000 0.00 0.00 39.03 3.67
1283 1340 2.034879 GCAGAAGTAGCAGGCGCAA 61.035 57.895 10.83 0.00 42.27 4.85
1495 1568 1.863155 ATTTCCATGGCCTCCGGTGT 61.863 55.000 6.96 0.00 0.00 4.16
1512 1585 3.350909 TACGCGACGGAGCTGCATT 62.351 57.895 15.93 0.00 34.40 3.56
1529 1602 1.089920 GTACCTTGGCTCGACGACTA 58.910 55.000 0.00 0.00 0.00 2.59
1602 1675 5.794894 TGACTTGTCCTCTCTAATGTTTCC 58.205 41.667 0.00 0.00 0.00 3.13
1632 1705 4.341235 TCTCGTCTCTGAAGAAAGGTTCAA 59.659 41.667 0.00 0.00 36.01 2.69
1731 1804 3.485463 TTGGGTTCCTATGCCTAATCG 57.515 47.619 0.00 0.00 0.00 3.34
1843 1916 2.633967 TCTCAGTTTTGCCATGCCAAAT 59.366 40.909 2.25 0.00 34.92 2.32
1853 1926 0.937304 TCTGCACGTCTCAGTTTTGC 59.063 50.000 12.46 0.00 33.48 3.68
1925 1998 3.452755 TGTGTCTACTGTGTCCAACTG 57.547 47.619 0.00 0.00 0.00 3.16
1942 2015 2.254918 TTCAAGTTGCGTGTGTTGTG 57.745 45.000 0.00 0.00 0.00 3.33
1961 2034 9.840427 CAGTAAAATTTAACCGACTGAATCAAT 57.160 29.630 9.68 0.00 37.14 2.57
1979 2052 9.109393 CACATAATACACCTACAGCAGTAAAAT 57.891 33.333 0.00 0.00 0.00 1.82
2145 2218 5.996644 AGAGAGAGAGAGATCGACCTTTTA 58.003 41.667 0.00 0.00 0.00 1.52
2156 2229 6.614657 TGAGAGATAGAGAGAGAGAGAGAGA 58.385 44.000 0.00 0.00 0.00 3.10
2157 2230 6.572119 GCTGAGAGATAGAGAGAGAGAGAGAG 60.572 50.000 0.00 0.00 0.00 3.20
2158 2231 5.244851 GCTGAGAGATAGAGAGAGAGAGAGA 59.755 48.000 0.00 0.00 0.00 3.10
2159 2232 5.245751 AGCTGAGAGATAGAGAGAGAGAGAG 59.754 48.000 0.00 0.00 0.00 3.20
2251 2325 4.639310 AGAAGGTGTGATGTAGTACCTACG 59.361 45.833 0.00 0.00 42.47 3.51
2339 2413 5.611374 CACAGGGAAATGGTATAGATCGTT 58.389 41.667 0.00 0.00 0.00 3.85
2341 2415 3.997021 GCACAGGGAAATGGTATAGATCG 59.003 47.826 0.00 0.00 0.00 3.69
2371 2445 0.179134 ACTACAGATCACGAAGCGGC 60.179 55.000 0.00 0.00 0.00 6.53
2591 2674 8.922931 TGCAGAATATTAGAGATGGCATTTTA 57.077 30.769 0.00 0.00 0.00 1.52
2719 2802 9.678260 GCCAGTAATTAAGATCCAGATCATAAT 57.322 33.333 10.17 10.50 41.01 1.28
2828 2913 9.021807 CAGCTTTAGATAATGGGATTTCATGAT 57.978 33.333 0.00 0.00 0.00 2.45
2933 3022 4.222886 CAACATTCGATAGCTAGAGTCCG 58.777 47.826 0.00 0.00 0.00 4.79
2992 3087 3.957497 TCCAAGTGGCTAAAAAGCAAAGA 59.043 39.130 0.00 0.00 36.33 2.52
3049 3144 2.391926 TCTGTGTGTTGGAGGGACTA 57.608 50.000 0.00 0.00 41.55 2.59
3191 4176 5.486735 AGAAATGGTTCCATGAATGCAAA 57.513 34.783 5.02 0.00 33.92 3.68
3236 4221 2.351726 ACTGTGCACTCAAAGACGTTTC 59.648 45.455 19.41 0.00 31.82 2.78
3241 4226 4.023707 AGCAATTACTGTGCACTCAAAGAC 60.024 41.667 19.41 1.68 44.74 3.01
3378 4364 4.330944 TTCAGGTACGTGACAAGACAAT 57.669 40.909 17.44 0.00 0.00 2.71
3454 4440 1.616374 CGGTGGTAGGGTTGCAAAAAT 59.384 47.619 0.00 0.00 0.00 1.82
3472 4458 1.216710 GCTGTCAAGAGAGACCCGG 59.783 63.158 0.00 0.00 37.73 5.73
3698 4684 5.484734 ACTAATACCTTGTAGGGAGAGGT 57.515 43.478 0.00 0.00 45.38 3.85
3726 4712 4.346127 ACAGCCATGATGCAGAACTAGATA 59.654 41.667 0.00 0.00 0.00 1.98
3946 4932 5.825679 CCAGGAACATATATTTCCGGACAAA 59.174 40.000 1.83 0.00 46.32 2.83
3953 4939 6.838382 ACTGTACCCAGGAACATATATTTCC 58.162 40.000 14.18 14.18 43.36 3.13
4066 5359 8.297470 ACATCCATCATGCCCATTATAAATAC 57.703 34.615 0.00 0.00 35.65 1.89
4073 5367 2.629137 GCAACATCCATCATGCCCATTA 59.371 45.455 0.00 0.00 35.65 1.90
4181 5475 1.433879 GACGTGTCCCATCTCCTCG 59.566 63.158 0.00 0.00 0.00 4.63
4270 5564 9.090692 CAATCATTTGAACTGAAAAGAACAAGT 57.909 29.630 0.00 0.00 34.60 3.16
4294 5588 4.959210 TGGATTCAACAGGAAAAGGAACAA 59.041 37.500 0.00 0.00 39.39 2.83
4306 5600 4.033358 CGCTAGCTACTTTGGATTCAACAG 59.967 45.833 13.93 0.00 31.78 3.16
4424 5718 6.575244 TCTCATCTAGCAATTTAAAGGGGA 57.425 37.500 0.00 0.00 0.00 4.81
4554 5848 0.393944 TAGTCAGCGTCGATCACCCT 60.394 55.000 0.00 0.00 0.00 4.34
4581 5875 4.643387 AGAGCACAACGCCCACCC 62.643 66.667 0.00 0.00 44.04 4.61
4632 5928 4.805231 TACGCGACATGGCCACCG 62.805 66.667 15.93 13.95 0.00 4.94
4786 6082 4.866921 GTGTTCCATCACCAACCTAAAAC 58.133 43.478 0.00 0.00 32.81 2.43
4830 6126 8.571461 AACTTCAGATACACACAATGATCATT 57.429 30.769 15.36 15.36 0.00 2.57
4846 6142 9.745018 TTCTCAAGATTCCATTTAACTTCAGAT 57.255 29.630 0.00 0.00 0.00 2.90
4902 6200 3.558931 TTCATGGATGGCAATACGTCT 57.441 42.857 0.00 0.00 0.00 4.18
4992 6294 9.050601 CACGCTACTACTAACCTAACTACTATT 57.949 37.037 0.00 0.00 0.00 1.73
4993 6295 7.659390 CCACGCTACTACTAACCTAACTACTAT 59.341 40.741 0.00 0.00 0.00 2.12
4994 6296 6.986817 CCACGCTACTACTAACCTAACTACTA 59.013 42.308 0.00 0.00 0.00 1.82
4995 6297 5.819901 CCACGCTACTACTAACCTAACTACT 59.180 44.000 0.00 0.00 0.00 2.57
4996 6298 5.008118 CCCACGCTACTACTAACCTAACTAC 59.992 48.000 0.00 0.00 0.00 2.73
4997 6299 5.104527 TCCCACGCTACTACTAACCTAACTA 60.105 44.000 0.00 0.00 0.00 2.24
4998 6300 3.950395 CCCACGCTACTACTAACCTAACT 59.050 47.826 0.00 0.00 0.00 2.24
4999 6301 3.947834 TCCCACGCTACTACTAACCTAAC 59.052 47.826 0.00 0.00 0.00 2.34
5000 6302 4.235079 TCCCACGCTACTACTAACCTAA 57.765 45.455 0.00 0.00 0.00 2.69
5001 6303 3.931907 TCCCACGCTACTACTAACCTA 57.068 47.619 0.00 0.00 0.00 3.08
5002 6304 2.814805 TCCCACGCTACTACTAACCT 57.185 50.000 0.00 0.00 0.00 3.50
5003 6305 3.874392 TTTCCCACGCTACTACTAACC 57.126 47.619 0.00 0.00 0.00 2.85
5004 6306 6.799512 TCTTATTTCCCACGCTACTACTAAC 58.200 40.000 0.00 0.00 0.00 2.34
5005 6307 7.408756 TTCTTATTTCCCACGCTACTACTAA 57.591 36.000 0.00 0.00 0.00 2.24
5006 6308 7.408756 TTTCTTATTTCCCACGCTACTACTA 57.591 36.000 0.00 0.00 0.00 1.82
5007 6309 5.927281 TTCTTATTTCCCACGCTACTACT 57.073 39.130 0.00 0.00 0.00 2.57
5008 6310 6.759827 TCATTTCTTATTTCCCACGCTACTAC 59.240 38.462 0.00 0.00 0.00 2.73
5009 6311 6.880484 TCATTTCTTATTTCCCACGCTACTA 58.120 36.000 0.00 0.00 0.00 1.82
5010 6312 5.741011 TCATTTCTTATTTCCCACGCTACT 58.259 37.500 0.00 0.00 0.00 2.57
5011 6313 5.504173 GCTCATTTCTTATTTCCCACGCTAC 60.504 44.000 0.00 0.00 0.00 3.58
5012 6314 4.574828 GCTCATTTCTTATTTCCCACGCTA 59.425 41.667 0.00 0.00 0.00 4.26
5013 6315 3.378427 GCTCATTTCTTATTTCCCACGCT 59.622 43.478 0.00 0.00 0.00 5.07
5014 6316 3.695816 GCTCATTTCTTATTTCCCACGC 58.304 45.455 0.00 0.00 0.00 5.34
5015 6317 3.788797 GCGCTCATTTCTTATTTCCCACG 60.789 47.826 0.00 0.00 0.00 4.94
5016 6318 3.378427 AGCGCTCATTTCTTATTTCCCAC 59.622 43.478 2.64 0.00 0.00 4.61
5017 6319 3.620488 AGCGCTCATTTCTTATTTCCCA 58.380 40.909 2.64 0.00 0.00 4.37
5018 6320 4.816925 AGTAGCGCTCATTTCTTATTTCCC 59.183 41.667 16.34 0.00 0.00 3.97
5019 6321 5.993106 AGTAGCGCTCATTTCTTATTTCC 57.007 39.130 16.34 0.00 0.00 3.13
5020 6322 7.701809 ACTAGTAGCGCTCATTTCTTATTTC 57.298 36.000 16.34 0.00 0.00 2.17
5021 6323 8.414778 ACTACTAGTAGCGCTCATTTCTTATTT 58.585 33.333 26.54 1.40 36.66 1.40
5022 6324 7.942990 ACTACTAGTAGCGCTCATTTCTTATT 58.057 34.615 26.54 1.76 36.66 1.40
5023 6325 7.513371 ACTACTAGTAGCGCTCATTTCTTAT 57.487 36.000 26.54 2.37 36.66 1.73
5024 6326 6.939132 ACTACTAGTAGCGCTCATTTCTTA 57.061 37.500 26.54 0.00 36.66 2.10
5025 6327 5.838531 ACTACTAGTAGCGCTCATTTCTT 57.161 39.130 26.54 2.98 36.66 2.52
5026 6328 5.838531 AACTACTAGTAGCGCTCATTTCT 57.161 39.130 26.54 8.65 36.66 2.52
5027 6329 6.144175 CCTAACTACTAGTAGCGCTCATTTC 58.856 44.000 26.54 0.28 36.66 2.17
5028 6330 5.593502 ACCTAACTACTAGTAGCGCTCATTT 59.406 40.000 26.54 15.09 36.66 2.32
5029 6331 5.131784 ACCTAACTACTAGTAGCGCTCATT 58.868 41.667 26.54 15.71 36.66 2.57
5030 6332 4.716794 ACCTAACTACTAGTAGCGCTCAT 58.283 43.478 26.54 6.31 36.66 2.90
5031 6333 4.148128 ACCTAACTACTAGTAGCGCTCA 57.852 45.455 26.54 8.98 36.66 4.26
5032 6334 5.757808 ACTAACCTAACTACTAGTAGCGCTC 59.242 44.000 26.54 5.88 36.66 5.03
5033 6335 5.679601 ACTAACCTAACTACTAGTAGCGCT 58.320 41.667 26.54 17.26 36.66 5.92
5120 6469 7.542025 GCTACAGGTAAAAGTTAGTAGTAGCA 58.458 38.462 13.86 0.00 46.60 3.49
5124 6473 5.405797 GCGCTACAGGTAAAAGTTAGTAGT 58.594 41.667 0.00 0.00 33.37 2.73
5138 6487 2.159680 GCTACTAGTATCGCGCTACAGG 60.160 54.545 20.91 14.64 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.