Multiple sequence alignment - TraesCS4A01G240200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G240200 chr4A 100.000 6114 0 0 1 6114 549821868 549815755 0.000000e+00 11291.0
1 TraesCS4A01G240200 chr4B 89.467 3342 184 53 408 3664 70550081 70553339 0.000000e+00 4067.0
2 TraesCS4A01G240200 chr4B 87.392 1729 135 35 4371 6093 70553596 70555247 0.000000e+00 1908.0
3 TraesCS4A01G240200 chr4B 82.027 957 92 29 5149 6093 70560378 70561266 0.000000e+00 741.0
4 TraesCS4A01G240200 chr4B 92.788 513 30 3 1986 2498 310972662 310973167 0.000000e+00 736.0
5 TraesCS4A01G240200 chr4B 85.992 257 14 10 1 252 70548171 70548410 7.860000e-64 255.0
6 TraesCS4A01G240200 chr4D 94.121 1650 69 11 991 2640 47894532 47896153 0.000000e+00 2484.0
7 TraesCS4A01G240200 chr4D 90.448 1340 68 20 3995 5334 47897634 47898913 0.000000e+00 1711.0
8 TraesCS4A01G240200 chr4D 86.092 1172 73 44 2744 3883 47896219 47897332 0.000000e+00 1179.0
9 TraesCS4A01G240200 chr4D 85.507 345 35 7 5633 5962 47905330 47905674 4.540000e-91 346.0
10 TraesCS4A01G240200 chr4D 91.584 202 13 3 399 597 47893856 47894056 6.040000e-70 276.0
11 TraesCS4A01G240200 chr4D 82.727 330 32 19 634 959 47894157 47894465 2.810000e-68 270.0
12 TraesCS4A01G240200 chr4D 90.667 75 2 1 177 251 47893698 47893767 1.810000e-15 95.3
13 TraesCS4A01G240200 chr3A 88.937 1157 88 22 1484 2640 497760058 497761174 0.000000e+00 1391.0
14 TraesCS4A01G240200 chr3A 96.774 62 1 1 1367 1428 497760014 497760074 1.080000e-17 102.0
15 TraesCS4A01G240200 chr5A 92.638 815 51 3 1484 2298 55267275 55266470 0.000000e+00 1164.0
16 TraesCS4A01G240200 chr5A 96.970 66 2 0 1367 1432 55267320 55267255 1.800000e-20 111.0
17 TraesCS4A01G240200 chr5A 89.362 47 5 0 4768 4814 540054132 540054178 6.620000e-05 60.2
18 TraesCS4A01G240200 chr2A 92.638 815 51 5 1484 2298 469818896 469818091 0.000000e+00 1164.0
19 TraesCS4A01G240200 chr2A 77.085 1043 191 37 1037 2058 694443368 694444383 5.350000e-155 558.0
20 TraesCS4A01G240200 chr2A 96.970 66 2 0 1367 1432 469818941 469818876 1.800000e-20 111.0
21 TraesCS4A01G240200 chr6B 92.515 815 52 5 1484 2298 650651105 650650300 0.000000e+00 1158.0
22 TraesCS4A01G240200 chr6B 96.970 66 2 0 1367 1432 650651150 650651085 1.800000e-20 111.0
23 TraesCS4A01G240200 chr3D 92.214 655 34 10 1986 2640 32388310 32387673 0.000000e+00 911.0
24 TraesCS4A01G240200 chr5B 91.705 651 37 8 1986 2636 663519446 663520079 0.000000e+00 887.0
25 TraesCS4A01G240200 chr5B 91.489 47 4 0 4768 4814 515186245 515186291 1.420000e-06 65.8
26 TraesCS4A01G240200 chr6A 90.950 663 29 11 1986 2640 66268797 66269436 0.000000e+00 863.0
27 TraesCS4A01G240200 chr2D 76.983 1034 189 37 1048 2058 553991053 553992060 4.170000e-151 545.0
28 TraesCS4A01G240200 chr2D 87.826 345 40 2 2232 2575 553992228 553992571 2.650000e-108 403.0
29 TraesCS4A01G240200 chr2D 80.556 108 18 3 4484 4590 599790693 599790588 5.080000e-11 80.5
30 TraesCS4A01G240200 chr2B 76.431 1031 200 34 1048 2058 660113940 660114947 9.080000e-143 518.0
31 TraesCS4A01G240200 chr2B 86.377 345 45 2 2232 2575 660115124 660115467 5.790000e-100 375.0
32 TraesCS4A01G240200 chr2B 80.556 108 18 3 4484 4590 729135973 729135868 5.080000e-11 80.5
33 TraesCS4A01G240200 chr5D 97.297 37 1 0 4299 4335 343121036 343121000 5.120000e-06 63.9
34 TraesCS4A01G240200 chr5D 89.362 47 5 0 4768 4814 425841074 425841120 6.620000e-05 60.2
35 TraesCS4A01G240200 chr6D 96.970 33 1 0 4769 4801 411221476 411221444 8.560000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G240200 chr4A 549815755 549821868 6113 True 11291.000000 11291 100.000000 1 6114 1 chr4A.!!$R1 6113
1 TraesCS4A01G240200 chr4B 70548171 70555247 7076 False 2076.666667 4067 87.617000 1 6093 3 chr4B.!!$F3 6092
2 TraesCS4A01G240200 chr4B 70560378 70561266 888 False 741.000000 741 82.027000 5149 6093 1 chr4B.!!$F1 944
3 TraesCS4A01G240200 chr4B 310972662 310973167 505 False 736.000000 736 92.788000 1986 2498 1 chr4B.!!$F2 512
4 TraesCS4A01G240200 chr4D 47893698 47898913 5215 False 1002.550000 2484 89.273167 177 5334 6 chr4D.!!$F2 5157
5 TraesCS4A01G240200 chr3A 497760014 497761174 1160 False 746.500000 1391 92.855500 1367 2640 2 chr3A.!!$F1 1273
6 TraesCS4A01G240200 chr5A 55266470 55267320 850 True 637.500000 1164 94.804000 1367 2298 2 chr5A.!!$R1 931
7 TraesCS4A01G240200 chr2A 469818091 469818941 850 True 637.500000 1164 94.804000 1367 2298 2 chr2A.!!$R1 931
8 TraesCS4A01G240200 chr2A 694443368 694444383 1015 False 558.000000 558 77.085000 1037 2058 1 chr2A.!!$F1 1021
9 TraesCS4A01G240200 chr6B 650650300 650651150 850 True 634.500000 1158 94.742500 1367 2298 2 chr6B.!!$R1 931
10 TraesCS4A01G240200 chr3D 32387673 32388310 637 True 911.000000 911 92.214000 1986 2640 1 chr3D.!!$R1 654
11 TraesCS4A01G240200 chr5B 663519446 663520079 633 False 887.000000 887 91.705000 1986 2636 1 chr5B.!!$F2 650
12 TraesCS4A01G240200 chr6A 66268797 66269436 639 False 863.000000 863 90.950000 1986 2640 1 chr6A.!!$F1 654
13 TraesCS4A01G240200 chr2D 553991053 553992571 1518 False 474.000000 545 82.404500 1048 2575 2 chr2D.!!$F1 1527
14 TraesCS4A01G240200 chr2B 660113940 660115467 1527 False 446.500000 518 81.404000 1048 2575 2 chr2B.!!$F1 1527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 76 0.032615 TGCCAACCTCACCCTTTTGT 60.033 50.0 0.0 0.0 0.00 2.83 F
653 2321 0.033699 AGCTTTGCTCCATCCCTTCC 60.034 55.0 0.0 0.0 30.62 3.46 F
2609 4386 0.107410 TCCATACAATTCGCGCCCTT 60.107 50.0 0.0 0.0 0.00 3.95 F
3893 5738 0.030908 GTCCTCACTCGGCCTTATCG 59.969 60.0 0.0 0.0 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1579 3301 0.392193 CTCTTCATCTGCGGCAAGGT 60.392 55.000 3.44 0.0 0.0 3.50 R
2621 4401 0.037882 CTCAGAGCAGAGCAAACGGA 60.038 55.000 0.00 0.0 0.0 4.69 R
3906 5751 0.037326 TCATGGGTTCGAGTCAGTGC 60.037 55.000 0.00 0.0 0.0 4.40 R
5741 7822 1.064463 TGGATTGACTTGAGGATGGCC 60.064 52.381 0.00 0.0 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.802051 TCGGGATTGCTGCCAGCC 62.802 66.667 15.29 0.00 41.51 4.85
40 44 2.362120 GATTGCTGCCAGCCCACT 60.362 61.111 15.29 0.00 41.51 4.00
58 62 0.037326 CTACTGCTTCTCGGTGCCAA 60.037 55.000 0.00 0.00 35.51 4.52
60 64 2.281484 TGCTTCTCGGTGCCAACC 60.281 61.111 0.00 0.00 43.76 3.77
62 66 2.035442 GCTTCTCGGTGCCAACCTC 61.035 63.158 0.00 0.00 45.17 3.85
70 74 0.759060 GGTGCCAACCTCACCCTTTT 60.759 55.000 0.89 0.00 46.26 2.27
71 75 0.389025 GTGCCAACCTCACCCTTTTG 59.611 55.000 0.00 0.00 0.00 2.44
72 76 0.032615 TGCCAACCTCACCCTTTTGT 60.033 50.000 0.00 0.00 0.00 2.83
73 77 0.389025 GCCAACCTCACCCTTTTGTG 59.611 55.000 0.00 0.00 37.59 3.33
74 78 2.026905 GCCAACCTCACCCTTTTGTGA 61.027 52.381 0.00 0.00 42.75 3.58
75 79 1.681264 CCAACCTCACCCTTTTGTGAC 59.319 52.381 0.00 0.00 40.22 3.67
77 81 0.179029 ACCTCACCCTTTTGTGACGG 60.179 55.000 0.00 0.00 40.22 4.79
78 82 1.515521 CCTCACCCTTTTGTGACGGC 61.516 60.000 0.00 0.00 40.22 5.68
79 83 1.841663 CTCACCCTTTTGTGACGGCG 61.842 60.000 4.80 4.80 40.22 6.46
80 84 1.890041 CACCCTTTTGTGACGGCGA 60.890 57.895 16.62 0.00 38.55 5.54
81 85 1.072505 ACCCTTTTGTGACGGCGAT 59.927 52.632 16.62 0.00 0.00 4.58
82 86 1.234615 ACCCTTTTGTGACGGCGATG 61.235 55.000 16.62 0.00 0.00 3.84
83 87 0.953471 CCCTTTTGTGACGGCGATGA 60.953 55.000 16.62 0.00 0.00 2.92
84 88 0.871722 CCTTTTGTGACGGCGATGAA 59.128 50.000 16.62 0.00 0.00 2.57
85 89 1.265635 CCTTTTGTGACGGCGATGAAA 59.734 47.619 16.62 3.92 0.00 2.69
86 90 2.287308 CCTTTTGTGACGGCGATGAAAA 60.287 45.455 16.62 11.64 0.00 2.29
87 91 2.679355 TTTGTGACGGCGATGAAAAG 57.321 45.000 16.62 0.00 0.00 2.27
88 92 0.237235 TTGTGACGGCGATGAAAAGC 59.763 50.000 16.62 0.00 0.00 3.51
101 105 0.843872 GAAAAGCGAAAACGGTGCAC 59.156 50.000 8.80 8.80 0.00 4.57
115 119 1.007038 TGCACGTGGAGTCCGTTAC 60.007 57.895 18.88 0.00 36.17 2.50
159 165 0.325272 TGCATGGCGTAGGTACCAAA 59.675 50.000 15.94 0.00 39.96 3.28
167 173 1.849097 GTAGGTACCAAAGATCGCCG 58.151 55.000 15.94 0.00 0.00 6.46
172 178 0.459585 TACCAAAGATCGCCGTCAGC 60.460 55.000 0.00 0.00 38.52 4.26
201 207 1.940613 GCCGTCCCATACATGTTTCTC 59.059 52.381 2.30 0.00 0.00 2.87
207 213 2.632377 CCATACATGTTTCTCACGGCT 58.368 47.619 2.30 0.00 0.00 5.52
208 214 3.009723 CCATACATGTTTCTCACGGCTT 58.990 45.455 2.30 0.00 0.00 4.35
209 215 3.063997 CCATACATGTTTCTCACGGCTTC 59.936 47.826 2.30 0.00 0.00 3.86
210 216 2.550830 ACATGTTTCTCACGGCTTCT 57.449 45.000 0.00 0.00 0.00 2.85
211 217 3.678056 ACATGTTTCTCACGGCTTCTA 57.322 42.857 0.00 0.00 0.00 2.10
252 258 2.828095 ACAACGCAGCCAGCAACA 60.828 55.556 0.00 0.00 46.13 3.33
253 259 2.050714 CAACGCAGCCAGCAACAG 60.051 61.111 0.00 0.00 46.13 3.16
254 260 3.969802 AACGCAGCCAGCAACAGC 61.970 61.111 0.00 0.00 46.13 4.40
258 264 3.289834 CAGCCAGCAACAGCCGTT 61.290 61.111 0.00 0.00 35.01 4.44
270 276 3.113979 GCCGTTGGCTTGCAATGC 61.114 61.111 0.00 5.95 46.69 3.56
271 277 2.339348 CCGTTGGCTTGCAATGCA 59.661 55.556 2.72 2.72 39.01 3.96
272 278 1.079681 CCGTTGGCTTGCAATGCAT 60.080 52.632 9.39 0.00 38.76 3.96
273 279 1.355796 CCGTTGGCTTGCAATGCATG 61.356 55.000 9.39 13.09 38.76 4.06
274 280 0.388778 CGTTGGCTTGCAATGCATGA 60.389 50.000 22.76 2.26 38.76 3.07
275 281 1.798283 GTTGGCTTGCAATGCATGAA 58.202 45.000 22.76 8.00 38.76 2.57
276 282 2.144730 GTTGGCTTGCAATGCATGAAA 58.855 42.857 22.76 13.55 38.76 2.69
277 283 2.087501 TGGCTTGCAATGCATGAAAG 57.912 45.000 22.76 12.20 46.21 2.62
278 284 1.338294 TGGCTTGCAATGCATGAAAGG 60.338 47.619 22.76 5.19 43.97 3.11
281 287 2.671396 GCTTGCAATGCATGAAAGGAAG 59.329 45.455 22.76 9.75 43.97 3.46
284 290 4.182693 TGCAATGCATGAAAGGAAGAAG 57.817 40.909 2.72 0.00 31.71 2.85
286 292 4.082408 TGCAATGCATGAAAGGAAGAAGAG 60.082 41.667 2.72 0.00 31.71 2.85
300 306 4.023622 GGAAGAAGAGGCAGTTTTGACTTC 60.024 45.833 0.00 0.00 44.85 3.01
309 315 3.817647 GCAGTTTTGACTTCTGACCTGAT 59.182 43.478 0.00 0.00 0.00 2.90
310 316 4.320057 GCAGTTTTGACTTCTGACCTGATG 60.320 45.833 0.00 0.00 0.00 3.07
311 317 5.059161 CAGTTTTGACTTCTGACCTGATGA 58.941 41.667 0.00 0.00 0.00 2.92
312 318 5.528690 CAGTTTTGACTTCTGACCTGATGAA 59.471 40.000 0.00 0.00 0.00 2.57
313 319 6.038603 CAGTTTTGACTTCTGACCTGATGAAA 59.961 38.462 0.00 0.00 0.00 2.69
314 320 6.038714 AGTTTTGACTTCTGACCTGATGAAAC 59.961 38.462 0.00 0.00 0.00 2.78
316 322 2.413453 GACTTCTGACCTGATGAAACGC 59.587 50.000 0.00 0.00 0.00 4.84
317 323 2.037772 ACTTCTGACCTGATGAAACGCT 59.962 45.455 0.00 0.00 0.00 5.07
318 324 2.084610 TCTGACCTGATGAAACGCTG 57.915 50.000 0.00 0.00 0.00 5.18
319 325 1.618343 TCTGACCTGATGAAACGCTGA 59.382 47.619 0.00 0.00 0.00 4.26
320 326 1.728971 CTGACCTGATGAAACGCTGAC 59.271 52.381 0.00 0.00 0.00 3.51
322 328 1.291877 ACCTGATGAAACGCTGACGC 61.292 55.000 0.00 0.00 45.53 5.19
323 329 1.016130 CCTGATGAAACGCTGACGCT 61.016 55.000 0.00 0.00 45.53 5.07
324 330 0.094216 CTGATGAAACGCTGACGCTG 59.906 55.000 0.00 0.00 45.53 5.18
325 331 1.291184 TGATGAAACGCTGACGCTGG 61.291 55.000 0.00 0.00 45.53 4.85
326 332 1.291877 GATGAAACGCTGACGCTGGT 61.292 55.000 0.00 0.00 45.53 4.00
327 333 0.884704 ATGAAACGCTGACGCTGGTT 60.885 50.000 0.00 0.00 45.53 3.67
345 354 5.243426 TGGTTGTTGTTTAGCTTTCACTC 57.757 39.130 0.00 0.00 0.00 3.51
357 366 2.095718 GCTTTCACTCCAATCAACCGAC 60.096 50.000 0.00 0.00 0.00 4.79
382 391 7.815840 CCCCCACAAAAGATAAACAAATTTT 57.184 32.000 0.00 0.00 0.00 1.82
383 392 8.231692 CCCCCACAAAAGATAAACAAATTTTT 57.768 30.769 0.00 0.00 0.00 1.94
439 2020 2.033424 GGTGCCACTCAAAACTCAACTC 59.967 50.000 0.00 0.00 0.00 3.01
487 2069 2.034687 CCCTCCTTGGCCACACAG 59.965 66.667 3.88 0.00 0.00 3.66
490 2072 0.178992 CCTCCTTGGCCACACAGAAA 60.179 55.000 3.88 0.00 0.00 2.52
515 2097 2.142292 ATTTGCTTCCCACCTCGGCT 62.142 55.000 0.00 0.00 0.00 5.52
601 2205 2.530701 CACCTCCTCACTACCACTTCT 58.469 52.381 0.00 0.00 0.00 2.85
602 2206 2.494073 CACCTCCTCACTACCACTTCTC 59.506 54.545 0.00 0.00 0.00 2.87
632 2289 2.047179 GCGTCACCAACCTCTCCC 60.047 66.667 0.00 0.00 0.00 4.30
644 2312 0.679321 CCTCTCCCAAGCTTTGCTCC 60.679 60.000 0.00 0.00 38.25 4.70
648 2316 0.323725 TCCCAAGCTTTGCTCCATCC 60.324 55.000 0.00 0.00 38.25 3.51
653 2321 0.033699 AGCTTTGCTCCATCCCTTCC 60.034 55.000 0.00 0.00 30.62 3.46
654 2322 1.039785 GCTTTGCTCCATCCCTTCCC 61.040 60.000 0.00 0.00 0.00 3.97
656 2324 0.332632 TTTGCTCCATCCCTTCCCAG 59.667 55.000 0.00 0.00 0.00 4.45
742 2410 4.193826 AGTAGCACACTGACCACTATTG 57.806 45.455 0.00 0.00 35.62 1.90
743 2411 3.578716 AGTAGCACACTGACCACTATTGT 59.421 43.478 0.00 0.00 35.62 2.71
744 2412 4.770531 AGTAGCACACTGACCACTATTGTA 59.229 41.667 0.00 0.00 35.62 2.41
745 2413 4.617253 AGCACACTGACCACTATTGTAA 57.383 40.909 0.00 0.00 0.00 2.41
766 2434 4.832590 AGCATCATTGAGCTTGCTAATC 57.167 40.909 10.72 0.00 43.28 1.75
768 2436 4.276183 AGCATCATTGAGCTTGCTAATCAG 59.724 41.667 10.72 0.00 43.28 2.90
799 2467 3.573110 GCGGATCCATAGTTGGTAGTAGT 59.427 47.826 13.41 0.00 44.06 2.73
800 2468 4.763793 GCGGATCCATAGTTGGTAGTAGTA 59.236 45.833 13.41 0.00 44.06 1.82
801 2469 5.106237 GCGGATCCATAGTTGGTAGTAGTAG 60.106 48.000 13.41 0.00 44.06 2.57
806 2474 4.262079 CCATAGTTGGTAGTAGTAGCTGCC 60.262 50.000 8.20 0.00 40.92 4.85
825 2493 1.746239 GTGCATGCAATTTGGCCCC 60.746 57.895 24.58 2.21 0.00 5.80
827 2495 2.512057 CATGCAATTTGGCCCCGC 60.512 61.111 0.00 0.00 0.00 6.13
849 2519 3.066190 CATGCCTGCCCACCTGTG 61.066 66.667 0.00 0.00 0.00 3.66
853 2523 2.033141 CCTGCCCACCTGTGTCAG 59.967 66.667 8.80 8.80 32.62 3.51
900 2571 2.258286 GCGCATCCACAACCAACC 59.742 61.111 0.30 0.00 0.00 3.77
913 2584 2.903135 CAACCAACCCTCTCTCTCTCTT 59.097 50.000 0.00 0.00 0.00 2.85
914 2585 2.815158 ACCAACCCTCTCTCTCTCTTC 58.185 52.381 0.00 0.00 0.00 2.87
1013 2729 1.109920 TCGTAGATGAGGAGCCTGCC 61.110 60.000 0.00 0.00 0.00 4.85
1033 2749 1.092345 GCACTCCTCGCTTGGAATCC 61.092 60.000 0.00 0.00 35.43 3.01
1034 2750 0.539051 CACTCCTCGCTTGGAATCCT 59.461 55.000 0.00 0.00 35.43 3.24
1035 2751 0.827368 ACTCCTCGCTTGGAATCCTC 59.173 55.000 0.00 0.00 35.43 3.71
1225 2947 2.099652 CTGCGTCAACACCTCCTCCA 62.100 60.000 0.00 0.00 0.00 3.86
1277 2999 2.184579 GAAGAACCTCTCCGGCCG 59.815 66.667 21.04 21.04 35.61 6.13
1560 3282 1.440938 TTGCCAACAACGGGTTCTCG 61.441 55.000 0.00 0.00 37.72 4.04
1848 3570 1.971695 CTTCCTCAACAACCCCGGC 60.972 63.158 0.00 0.00 0.00 6.13
2367 4142 4.572571 GTGGTGGGCAACGGGACA 62.573 66.667 0.00 0.00 37.60 4.02
2594 4371 0.467384 CGCAACATCCTCTCCTCCAT 59.533 55.000 0.00 0.00 0.00 3.41
2595 4372 1.688735 CGCAACATCCTCTCCTCCATA 59.311 52.381 0.00 0.00 0.00 2.74
2596 4373 2.546795 CGCAACATCCTCTCCTCCATAC 60.547 54.545 0.00 0.00 0.00 2.39
2597 4374 2.435805 GCAACATCCTCTCCTCCATACA 59.564 50.000 0.00 0.00 0.00 2.29
2598 4375 3.118261 GCAACATCCTCTCCTCCATACAA 60.118 47.826 0.00 0.00 0.00 2.41
2599 4376 4.445448 GCAACATCCTCTCCTCCATACAAT 60.445 45.833 0.00 0.00 0.00 2.71
2600 4377 5.688807 CAACATCCTCTCCTCCATACAATT 58.311 41.667 0.00 0.00 0.00 2.32
2601 4378 5.559148 ACATCCTCTCCTCCATACAATTC 57.441 43.478 0.00 0.00 0.00 2.17
2602 4379 4.039730 ACATCCTCTCCTCCATACAATTCG 59.960 45.833 0.00 0.00 0.00 3.34
2603 4380 2.365617 TCCTCTCCTCCATACAATTCGC 59.634 50.000 0.00 0.00 0.00 4.70
2604 4381 2.398498 CTCTCCTCCATACAATTCGCG 58.602 52.381 0.00 0.00 0.00 5.87
2608 4385 0.532862 CTCCATACAATTCGCGCCCT 60.533 55.000 0.00 0.00 0.00 5.19
2609 4386 0.107410 TCCATACAATTCGCGCCCTT 60.107 50.000 0.00 0.00 0.00 3.95
2640 4420 0.037882 TCCGTTTGCTCTGCTCTGAG 60.038 55.000 0.00 0.00 37.16 3.35
2641 4421 0.320247 CCGTTTGCTCTGCTCTGAGT 60.320 55.000 6.53 0.00 36.51 3.41
2657 4437 0.179220 GAGTCTCTGACCGAACGTCG 60.179 60.000 0.00 0.00 45.23 5.12
2658 4438 0.883814 AGTCTCTGACCGAACGTCGT 60.884 55.000 0.00 0.00 45.23 4.34
2659 4439 0.792640 GTCTCTGACCGAACGTCGTA 59.207 55.000 0.00 0.00 45.23 3.43
2660 4440 1.195448 GTCTCTGACCGAACGTCGTAA 59.805 52.381 0.00 0.00 45.23 3.18
2661 4441 1.195448 TCTCTGACCGAACGTCGTAAC 59.805 52.381 0.00 0.00 45.23 2.50
2691 4471 0.610687 CCACCTCCCAGTGACTCTTC 59.389 60.000 0.00 0.00 40.34 2.87
2694 4474 3.165875 CACCTCCCAGTGACTCTTCTAA 58.834 50.000 0.00 0.00 40.34 2.10
2695 4475 3.578716 CACCTCCCAGTGACTCTTCTAAA 59.421 47.826 0.00 0.00 40.34 1.85
2696 4476 4.040461 CACCTCCCAGTGACTCTTCTAAAA 59.960 45.833 0.00 0.00 40.34 1.52
2697 4477 4.658901 ACCTCCCAGTGACTCTTCTAAAAA 59.341 41.667 0.00 0.00 0.00 1.94
2704 4484 7.041984 CCCAGTGACTCTTCTAAAAACTGTTAC 60.042 40.741 0.00 0.00 33.38 2.50
2740 4520 1.741394 GCTCCATGCAAATCCAAAGGC 60.741 52.381 0.00 0.00 42.31 4.35
2759 4557 7.812669 CCAAAGGCTATAAAAACACAACCTAAG 59.187 37.037 0.00 0.00 0.00 2.18
2779 4577 4.075963 AGCAAAACAAATGGCAGAACAT 57.924 36.364 0.00 0.00 0.00 2.71
2786 4584 3.118665 ACAAATGGCAGAACATAATGGGC 60.119 43.478 0.00 0.00 0.00 5.36
2835 4640 6.356186 ACGGTACAAAACTAGAGATCCTTT 57.644 37.500 0.00 0.00 0.00 3.11
2838 4644 6.310711 CGGTACAAAACTAGAGATCCTTTGTC 59.689 42.308 0.00 0.00 39.97 3.18
2840 4646 5.238583 ACAAAACTAGAGATCCTTTGTCGG 58.761 41.667 0.00 0.00 35.82 4.79
2854 4660 0.753479 TGTCGGTGGCCACAAACAAT 60.753 50.000 35.78 0.00 0.00 2.71
2869 4678 7.380602 GCCACAAACAATATCTGATTAAGCATC 59.619 37.037 0.00 0.00 0.00 3.91
2876 4685 7.610692 ACAATATCTGATTAAGCATCCATGAGG 59.389 37.037 0.00 0.00 0.00 3.86
2898 4707 2.595463 GTGCAAGGCTGTGCTCCA 60.595 61.111 18.03 1.34 45.17 3.86
2919 4729 1.141665 GGATTGTTGGATTGCGGCC 59.858 57.895 0.00 0.00 0.00 6.13
2935 4745 2.187946 CCCCTGCACGCTAAGGAG 59.812 66.667 0.00 0.00 35.40 3.69
3014 4824 0.389948 GCCAACTGACCGACCACTAG 60.390 60.000 0.00 0.00 0.00 2.57
3015 4825 1.254026 CCAACTGACCGACCACTAGA 58.746 55.000 0.00 0.00 0.00 2.43
3050 4860 0.039165 GCGGTGAAAAGCTTCCAAGG 60.039 55.000 0.00 0.00 0.00 3.61
3115 4930 4.737177 TGCATGGCATGGACCGCA 62.737 61.111 27.48 16.57 31.71 5.69
3116 4931 3.896133 GCATGGCATGGACCGCAG 61.896 66.667 27.48 1.12 0.00 5.18
3162 4977 0.548031 ATGATGATGCTCCGGTTGGT 59.452 50.000 0.00 0.00 36.30 3.67
3218 5033 1.271379 TGCCACCTTTTCTCCTGTAGC 60.271 52.381 0.00 0.00 0.00 3.58
3223 5038 2.019984 CCTTTTCTCCTGTAGCCATGC 58.980 52.381 0.00 0.00 0.00 4.06
3288 5106 1.000274 GCCTTCACAATCCGCAAACTT 60.000 47.619 0.00 0.00 0.00 2.66
3296 5114 3.058016 ACAATCCGCAAACTTCACTCATG 60.058 43.478 0.00 0.00 0.00 3.07
3298 5116 3.394674 TCCGCAAACTTCACTCATGTA 57.605 42.857 0.00 0.00 0.00 2.29
3299 5117 3.064207 TCCGCAAACTTCACTCATGTAC 58.936 45.455 0.00 0.00 0.00 2.90
3300 5118 2.159841 CCGCAAACTTCACTCATGTACG 60.160 50.000 0.00 0.00 0.00 3.67
3302 5120 3.671459 CGCAAACTTCACTCATGTACGTA 59.329 43.478 0.00 0.00 0.00 3.57
3341 5180 0.386476 ATGTTAGGCCAATGCATGCG 59.614 50.000 14.09 0.00 40.13 4.73
3344 5183 0.455410 TTAGGCCAATGCATGCGAAC 59.545 50.000 14.09 0.14 40.13 3.95
3356 5196 1.089920 ATGCGAACACAGAGATTGCC 58.910 50.000 0.00 0.00 0.00 4.52
3456 5296 2.033424 GGCAGTGAACAGGAAAGTGAAC 59.967 50.000 0.00 0.00 0.00 3.18
3471 5311 5.535753 AAGTGAACAAAGATCCAAAAGGG 57.464 39.130 0.00 0.00 38.37 3.95
3481 5321 5.171541 AGATCCAAAAGGGGTAGATAGGA 57.828 43.478 0.00 0.00 37.22 2.94
3692 5533 2.231964 AGATGCCGTCGGTAAAACTGTA 59.768 45.455 13.94 0.00 0.00 2.74
3693 5534 2.068837 TGCCGTCGGTAAAACTGTAG 57.931 50.000 13.94 0.00 0.00 2.74
3700 5541 5.460646 CGTCGGTAAAACTGTAGGAACTAA 58.539 41.667 0.00 0.00 45.48 2.24
3723 5564 4.184629 AGAGAAATACACAGTCAATCGGC 58.815 43.478 0.00 0.00 0.00 5.54
3729 5570 2.297701 ACACAGTCAATCGGCAAAACT 58.702 42.857 0.00 0.00 0.00 2.66
3732 5573 2.549754 ACAGTCAATCGGCAAAACTCTG 59.450 45.455 0.00 0.00 0.00 3.35
3785 5626 2.023673 GGGCGTTGGATCATCATCAAA 58.976 47.619 0.00 0.00 0.00 2.69
3801 5646 4.988598 AACAGCCAGCACCGTCGG 62.989 66.667 10.48 10.48 0.00 4.79
3821 5666 3.997064 CTGCTTCCTCGCCTCCACG 62.997 68.421 0.00 0.00 0.00 4.94
3822 5667 4.070552 GCTTCCTCGCCTCCACGT 62.071 66.667 0.00 0.00 0.00 4.49
3824 5669 4.373116 TTCCTCGCCTCCACGTGC 62.373 66.667 10.91 0.00 0.00 5.34
3843 5688 2.048503 ACGTCACGGCTTGCTACC 60.049 61.111 0.35 0.00 0.00 3.18
3879 5724 2.579738 GTCTCCGGCAAGGTCCTC 59.420 66.667 0.00 0.00 41.99 3.71
3883 5728 2.232298 CTCCGGCAAGGTCCTCACTC 62.232 65.000 0.00 0.00 41.99 3.51
3885 5730 2.266055 GGCAAGGTCCTCACTCGG 59.734 66.667 0.00 0.00 0.00 4.63
3889 5734 1.536662 AAGGTCCTCACTCGGCCTT 60.537 57.895 0.00 0.00 36.43 4.35
3891 5736 0.032017 AGGTCCTCACTCGGCCTTAT 60.032 55.000 0.00 0.00 29.82 1.73
3892 5737 0.389757 GGTCCTCACTCGGCCTTATC 59.610 60.000 0.00 0.00 0.00 1.75
3893 5738 0.030908 GTCCTCACTCGGCCTTATCG 59.969 60.000 0.00 0.00 0.00 2.92
3894 5739 0.106868 TCCTCACTCGGCCTTATCGA 60.107 55.000 0.00 0.00 35.24 3.59
3895 5740 0.744874 CCTCACTCGGCCTTATCGAA 59.255 55.000 0.00 0.00 36.15 3.71
3896 5741 1.269309 CCTCACTCGGCCTTATCGAAG 60.269 57.143 0.00 0.00 36.15 3.79
3897 5742 1.405821 CTCACTCGGCCTTATCGAAGT 59.594 52.381 0.00 0.00 36.15 3.01
3898 5743 1.404391 TCACTCGGCCTTATCGAAGTC 59.596 52.381 0.00 0.00 36.15 3.01
3899 5744 1.134367 CACTCGGCCTTATCGAAGTCA 59.866 52.381 0.00 0.00 36.15 3.41
3900 5745 1.822990 ACTCGGCCTTATCGAAGTCAA 59.177 47.619 0.00 0.00 36.15 3.18
3901 5746 2.194271 CTCGGCCTTATCGAAGTCAAC 58.806 52.381 0.00 0.00 36.15 3.18
3902 5747 1.546923 TCGGCCTTATCGAAGTCAACA 59.453 47.619 0.00 0.00 33.42 3.33
3903 5748 1.659098 CGGCCTTATCGAAGTCAACAC 59.341 52.381 0.00 0.00 0.00 3.32
3905 5750 3.335579 GGCCTTATCGAAGTCAACACTT 58.664 45.455 0.00 0.00 46.21 3.16
3906 5751 3.125316 GGCCTTATCGAAGTCAACACTTG 59.875 47.826 0.00 0.00 43.37 3.16
3909 5754 4.377431 CCTTATCGAAGTCAACACTTGCAC 60.377 45.833 0.00 0.00 43.37 4.57
3922 5798 0.249868 CTTGCACTGACTCGAACCCA 60.250 55.000 0.00 0.00 0.00 4.51
3929 5805 1.276421 CTGACTCGAACCCATGACCTT 59.724 52.381 0.00 0.00 0.00 3.50
3948 5824 3.578688 CTTATGGTCAAAAGGCAACAGC 58.421 45.455 0.00 0.00 41.41 4.40
3954 5830 2.226674 GTCAAAAGGCAACAGCTCTACC 59.773 50.000 0.00 0.00 41.41 3.18
3956 5832 0.955919 AAAGGCAACAGCTCTACCGC 60.956 55.000 0.00 0.00 41.41 5.68
3957 5833 2.804828 AAGGCAACAGCTCTACCGCC 62.805 60.000 0.00 0.00 39.90 6.13
3958 5834 2.047274 GCAACAGCTCTACCGCCA 60.047 61.111 0.00 0.00 0.00 5.69
3980 5856 3.875134 ACGCCATGGCTTTGTATTAGTAC 59.125 43.478 33.07 0.51 39.32 2.73
3991 5867 7.962918 GGCTTTGTATTAGTACTCACAAACATG 59.037 37.037 18.92 13.69 36.31 3.21
4052 6087 7.215789 TGAATACATGTGCAAAACAAAGGATT 58.784 30.769 9.11 0.00 43.61 3.01
4053 6088 7.171167 TGAATACATGTGCAAAACAAAGGATTG 59.829 33.333 9.11 0.00 43.61 2.67
4061 6096 6.258507 GTGCAAAACAAAGGATTGAGAAACAT 59.741 34.615 0.00 0.00 38.94 2.71
4089 6124 6.761242 GGATTTTATGAACTTGGGTATTTGGC 59.239 38.462 0.00 0.00 0.00 4.52
4108 6143 7.747809 TTTGGCCATAGAAATAGGGAAAAAT 57.252 32.000 6.09 0.00 0.00 1.82
4109 6144 8.846423 TTTGGCCATAGAAATAGGGAAAAATA 57.154 30.769 6.09 0.00 0.00 1.40
4110 6145 8.477419 TTGGCCATAGAAATAGGGAAAAATAG 57.523 34.615 6.09 0.00 0.00 1.73
4111 6146 7.821566 TGGCCATAGAAATAGGGAAAAATAGA 58.178 34.615 0.00 0.00 0.00 1.98
4113 6148 9.314133 GGCCATAGAAATAGGGAAAAATAGAAT 57.686 33.333 0.00 0.00 0.00 2.40
4142 6177 6.371271 ACCTTCAAACAAAGTCAAACAAATGG 59.629 34.615 0.00 0.00 0.00 3.16
4152 6195 4.757657 AGTCAAACAAATGGCATACGTACA 59.242 37.500 0.00 0.00 0.00 2.90
4154 6197 5.511377 GTCAAACAAATGGCATACGTACATG 59.489 40.000 0.00 0.00 0.00 3.21
4165 6208 4.509970 GCATACGTACATGGTAAGCAATCA 59.490 41.667 0.00 0.00 35.35 2.57
4219 6280 2.262423 AGGACCTCAGTTTTGTGCTC 57.738 50.000 0.00 0.00 0.00 4.26
4228 6289 5.647658 CCTCAGTTTTGTGCTCCATGTATTA 59.352 40.000 0.00 0.00 0.00 0.98
4237 6298 8.523915 TTGTGCTCCATGTATTAGAATTTGAT 57.476 30.769 0.00 0.00 0.00 2.57
4264 6325 7.434492 ACAGTCTTCCTAATGTTATATCCGTG 58.566 38.462 0.00 0.00 0.00 4.94
4267 6328 8.361139 AGTCTTCCTAATGTTATATCCGTGAAG 58.639 37.037 0.00 0.00 0.00 3.02
4268 6329 8.142551 GTCTTCCTAATGTTATATCCGTGAAGT 58.857 37.037 0.00 0.00 0.00 3.01
4317 6378 9.685276 AGAAATTCATGGTATGTCATTTGACTA 57.315 29.630 11.67 0.00 44.99 2.59
4325 6386 6.878923 TGGTATGTCATTTGACTAAGACTTGG 59.121 38.462 11.67 0.00 44.99 3.61
4337 6398 7.837863 TGACTAAGACTTGGTTAAATCTCGAT 58.162 34.615 5.60 0.00 0.00 3.59
4341 6402 5.112686 AGACTTGGTTAAATCTCGATCAGC 58.887 41.667 0.00 0.00 0.00 4.26
4352 6413 7.887996 AAATCTCGATCAGCTATCTCATTTC 57.112 36.000 0.00 0.00 31.87 2.17
5115 7182 2.457366 GACAAGATTGGGTCGTGACT 57.543 50.000 0.00 0.00 38.42 3.41
5116 7183 2.338500 GACAAGATTGGGTCGTGACTC 58.662 52.381 0.00 0.00 38.42 3.36
5117 7184 1.336887 ACAAGATTGGGTCGTGACTCG 60.337 52.381 0.00 0.00 38.42 4.18
5118 7185 0.966920 AAGATTGGGTCGTGACTCGT 59.033 50.000 0.00 0.00 40.80 4.18
5119 7186 0.243907 AGATTGGGTCGTGACTCGTG 59.756 55.000 0.00 0.00 40.80 4.35
5120 7187 0.242825 GATTGGGTCGTGACTCGTGA 59.757 55.000 0.00 0.00 40.80 4.35
5156 7223 0.109597 CTTTGCCATCCGTTGTCAGC 60.110 55.000 0.00 0.00 0.00 4.26
5178 7247 4.702131 GCTTGTCAGAATTGGTTATCACCT 59.298 41.667 0.00 0.00 44.61 4.00
5190 7259 3.444388 GGTTATCACCTGAGAACGTCTCT 59.556 47.826 13.65 7.91 44.61 3.10
5205 7274 3.557595 ACGTCTCTCTTTCTTTGCACTTG 59.442 43.478 0.00 0.00 0.00 3.16
5206 7275 3.059325 CGTCTCTCTTTCTTTGCACTTGG 60.059 47.826 0.00 0.00 0.00 3.61
5269 7338 8.293867 TCATTTTTAGGAACCTTCGTGTAAATG 58.706 33.333 0.00 14.98 37.81 2.32
5343 7412 9.384764 GTTATAGCAACTTATATCCTTCCATCC 57.615 37.037 0.00 0.00 0.00 3.51
5350 7425 6.644882 ACTTATATCCTTCCATCCTAAGGGT 58.355 40.000 2.23 0.00 43.20 4.34
5353 7428 9.285359 CTTATATCCTTCCATCCTAAGGGTATT 57.715 37.037 11.75 0.00 44.52 1.89
5365 7440 5.045432 TCCTAAGGGTATTTTCAACACGGAT 60.045 40.000 0.00 0.00 0.00 4.18
5431 7506 1.480789 TTGCCATGCAATGCAGATCT 58.519 45.000 14.98 0.00 43.99 2.75
5438 7513 5.700846 CCATGCAATGCAGATCTCTATTTC 58.299 41.667 14.98 0.00 44.97 2.17
5442 7517 4.152045 GCAATGCAGATCTCTATTTCTCCG 59.848 45.833 0.00 0.00 0.00 4.63
5464 7539 1.808411 GACCAGTCCAAATTCTCGCA 58.192 50.000 0.00 0.00 0.00 5.10
5465 7540 2.151202 GACCAGTCCAAATTCTCGCAA 58.849 47.619 0.00 0.00 0.00 4.85
5473 7550 3.066900 TCCAAATTCTCGCAAACCGAAAA 59.933 39.130 0.00 0.00 46.81 2.29
5495 7572 3.942748 ACAAACTTGAGCAAGGTTTACGA 59.057 39.130 10.61 0.00 45.33 3.43
5496 7573 4.578928 ACAAACTTGAGCAAGGTTTACGAT 59.421 37.500 10.61 0.00 45.33 3.73
5512 7589 2.033793 CGATAGTCCGAACATCCGAC 57.966 55.000 0.00 0.00 0.00 4.79
5513 7590 1.602851 CGATAGTCCGAACATCCGACT 59.397 52.381 6.60 6.60 0.00 4.18
5514 7591 2.602456 CGATAGTCCGAACATCCGACTG 60.602 54.545 10.34 0.00 0.00 3.51
5515 7592 1.830279 TAGTCCGAACATCCGACTGT 58.170 50.000 10.34 0.00 0.00 3.55
5516 7593 0.526662 AGTCCGAACATCCGACTGTC 59.473 55.000 0.00 0.00 0.00 3.51
5517 7594 0.526662 GTCCGAACATCCGACTGTCT 59.473 55.000 6.21 0.00 0.00 3.41
5518 7595 1.741706 GTCCGAACATCCGACTGTCTA 59.258 52.381 6.21 0.00 0.00 2.59
5519 7596 2.163010 GTCCGAACATCCGACTGTCTAA 59.837 50.000 6.21 0.00 0.00 2.10
5520 7597 3.021695 TCCGAACATCCGACTGTCTAAT 58.978 45.455 6.21 0.00 0.00 1.73
5521 7598 4.036027 GTCCGAACATCCGACTGTCTAATA 59.964 45.833 6.21 0.00 0.00 0.98
5522 7599 4.641541 TCCGAACATCCGACTGTCTAATAA 59.358 41.667 6.21 0.00 0.00 1.40
5523 7600 5.125900 TCCGAACATCCGACTGTCTAATAAA 59.874 40.000 6.21 0.00 0.00 1.40
5524 7601 5.808540 CCGAACATCCGACTGTCTAATAAAA 59.191 40.000 6.21 0.00 0.00 1.52
5525 7602 6.311935 CCGAACATCCGACTGTCTAATAAAAA 59.688 38.462 6.21 0.00 0.00 1.94
5547 7624 8.877864 AAAAACCATCATCCAACTGTCTAATA 57.122 30.769 0.00 0.00 0.00 0.98
5548 7625 8.877864 AAAACCATCATCCAACTGTCTAATAA 57.122 30.769 0.00 0.00 0.00 1.40
5568 7645 1.971481 AAAACCACCACGTACCCTTC 58.029 50.000 0.00 0.00 0.00 3.46
5569 7646 0.249996 AAACCACCACGTACCCTTCG 60.250 55.000 0.00 0.00 0.00 3.79
5570 7647 2.103339 AACCACCACGTACCCTTCGG 62.103 60.000 0.00 0.00 0.00 4.30
5576 7653 1.105457 CACGTACCCTTCGGTATCCA 58.895 55.000 0.00 0.00 46.46 3.41
5619 7700 1.880271 TGCGTATTTGGGTTTGACGA 58.120 45.000 0.00 0.00 35.59 4.20
5636 7717 4.439057 TGACGAAAGGTGATTAGTATGCC 58.561 43.478 0.00 0.00 0.00 4.40
5638 7719 4.694339 ACGAAAGGTGATTAGTATGCCTC 58.306 43.478 0.00 0.00 0.00 4.70
5741 7822 0.908198 ACCTGGCTAGAAGGAAGCAG 59.092 55.000 16.58 0.00 41.93 4.24
5750 7831 0.465278 GAAGGAAGCAGGCCATCCTC 60.465 60.000 16.76 9.10 42.72 3.71
5797 7878 1.004918 CGGCGAAGGACCAGAAGTT 60.005 57.895 0.00 0.00 0.00 2.66
5807 7888 1.080025 CCAGAAGTTCGGTCCGTCC 60.080 63.158 11.88 2.93 0.00 4.79
5815 7896 4.675029 CGGTCCGTCCCGCACTTT 62.675 66.667 2.08 0.00 41.78 2.66
5822 7903 1.135527 CCGTCCCGCACTTTAGATACA 59.864 52.381 0.00 0.00 0.00 2.29
5825 7906 3.428452 CGTCCCGCACTTTAGATACAGAA 60.428 47.826 0.00 0.00 0.00 3.02
5828 7909 4.222145 TCCCGCACTTTAGATACAGAAGTT 59.778 41.667 0.00 0.00 31.63 2.66
5848 7929 4.569162 AGTTGTCAAAATCTTCGACGACAA 59.431 37.500 0.00 0.00 43.59 3.18
5867 7948 7.095270 ACGACAAGTAGAAATAGGGTAGTTTG 58.905 38.462 0.00 0.00 0.00 2.93
5874 7955 9.710818 AGTAGAAATAGGGTAGTTTGATCTACA 57.289 33.333 10.61 0.00 41.20 2.74
5928 8010 7.452880 TGAATTTAGGTCAGTCAATTTCCTG 57.547 36.000 0.00 0.00 0.00 3.86
5954 8036 6.042777 CCGTTGATTACTGCTCTAAGATTCA 58.957 40.000 0.00 0.00 0.00 2.57
5955 8037 6.019479 CCGTTGATTACTGCTCTAAGATTCAC 60.019 42.308 0.00 0.00 0.00 3.18
5959 8041 3.601443 ACTGCTCTAAGATTCACGCTT 57.399 42.857 0.00 0.00 0.00 4.68
5960 8042 3.257393 ACTGCTCTAAGATTCACGCTTG 58.743 45.455 0.00 0.00 0.00 4.01
5961 8043 3.257393 CTGCTCTAAGATTCACGCTTGT 58.743 45.455 0.00 0.00 0.00 3.16
5962 8044 3.254060 TGCTCTAAGATTCACGCTTGTC 58.746 45.455 0.00 0.00 0.00 3.18
5963 8045 3.056536 TGCTCTAAGATTCACGCTTGTCT 60.057 43.478 0.00 0.00 0.00 3.41
5964 8046 3.929610 GCTCTAAGATTCACGCTTGTCTT 59.070 43.478 2.35 2.35 35.32 3.01
5965 8047 4.390297 GCTCTAAGATTCACGCTTGTCTTT 59.610 41.667 2.09 0.00 33.36 2.52
5966 8048 5.106908 GCTCTAAGATTCACGCTTGTCTTTT 60.107 40.000 2.09 0.00 33.36 2.27
5967 8049 6.566753 GCTCTAAGATTCACGCTTGTCTTTTT 60.567 38.462 2.09 0.00 33.36 1.94
5995 8077 1.034838 TGTGGGGTGTCTTGTTGTGC 61.035 55.000 0.00 0.00 0.00 4.57
5999 8081 1.381165 GGGTGTCTTGTTGTGCGGTT 61.381 55.000 0.00 0.00 0.00 4.44
6001 8083 1.263217 GGTGTCTTGTTGTGCGGTTAG 59.737 52.381 0.00 0.00 0.00 2.34
6011 8093 4.336993 TGTTGTGCGGTTAGTCAATTCTTT 59.663 37.500 0.00 0.00 0.00 2.52
6016 8098 3.430895 GCGGTTAGTCAATTCTTTCACGA 59.569 43.478 0.00 0.00 0.00 4.35
6026 8108 0.681733 TCTTTCACGAGCTGCCTCTT 59.318 50.000 0.00 0.00 35.90 2.85
6039 8121 2.968574 CTGCCTCTTTCTAGCCCATCTA 59.031 50.000 0.00 0.00 0.00 1.98
6048 8130 4.265856 TCTAGCCCATCTAACTCCTCAA 57.734 45.455 0.00 0.00 0.00 3.02
6049 8131 3.961408 TCTAGCCCATCTAACTCCTCAAC 59.039 47.826 0.00 0.00 0.00 3.18
6050 8132 1.840635 AGCCCATCTAACTCCTCAACC 59.159 52.381 0.00 0.00 0.00 3.77
6051 8133 1.134068 GCCCATCTAACTCCTCAACCC 60.134 57.143 0.00 0.00 0.00 4.11
6054 8136 2.436173 CCATCTAACTCCTCAACCCTCC 59.564 54.545 0.00 0.00 0.00 4.30
6055 8137 3.379452 CATCTAACTCCTCAACCCTCCT 58.621 50.000 0.00 0.00 0.00 3.69
6056 8138 3.103080 TCTAACTCCTCAACCCTCCTC 57.897 52.381 0.00 0.00 0.00 3.71
6057 8139 2.655407 TCTAACTCCTCAACCCTCCTCT 59.345 50.000 0.00 0.00 0.00 3.69
6096 8178 1.519408 TTTTCCGCACTCTGTTAGCC 58.481 50.000 0.00 0.00 0.00 3.93
6097 8179 0.321298 TTTCCGCACTCTGTTAGCCC 60.321 55.000 0.00 0.00 0.00 5.19
6098 8180 1.476845 TTCCGCACTCTGTTAGCCCA 61.477 55.000 0.00 0.00 0.00 5.36
6099 8181 1.221840 CCGCACTCTGTTAGCCCAT 59.778 57.895 0.00 0.00 0.00 4.00
6100 8182 0.811616 CCGCACTCTGTTAGCCCATC 60.812 60.000 0.00 0.00 0.00 3.51
6101 8183 0.176680 CGCACTCTGTTAGCCCATCT 59.823 55.000 0.00 0.00 0.00 2.90
6102 8184 1.409064 CGCACTCTGTTAGCCCATCTA 59.591 52.381 0.00 0.00 0.00 1.98
6103 8185 2.159099 CGCACTCTGTTAGCCCATCTAA 60.159 50.000 0.00 0.00 35.02 2.10
6111 8193 1.410004 TAGCCCATCTAACCCTGTCG 58.590 55.000 0.00 0.00 0.00 4.35
6112 8194 1.146263 GCCCATCTAACCCTGTCGG 59.854 63.158 0.00 0.00 37.81 4.79
6113 8195 1.146263 CCCATCTAACCCTGTCGGC 59.854 63.158 0.00 0.00 33.26 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.737715 GCACCGAGAAGCAGTAGTGG 60.738 60.000 0.00 0.00 0.00 4.00
37 38 0.737715 GGCACCGAGAAGCAGTAGTG 60.738 60.000 0.00 0.00 0.00 2.74
40 44 0.320421 GTTGGCACCGAGAAGCAGTA 60.320 55.000 0.00 0.00 0.00 2.74
62 66 1.234615 ATCGCCGTCACAAAAGGGTG 61.235 55.000 0.00 0.00 40.16 4.61
65 69 0.871722 TTCATCGCCGTCACAAAAGG 59.128 50.000 0.00 0.00 0.00 3.11
70 74 1.866237 GCTTTTCATCGCCGTCACA 59.134 52.632 0.00 0.00 0.00 3.58
71 75 1.225745 CGCTTTTCATCGCCGTCAC 60.226 57.895 0.00 0.00 0.00 3.67
72 76 0.946700 TTCGCTTTTCATCGCCGTCA 60.947 50.000 0.00 0.00 0.00 4.35
73 77 0.165079 TTTCGCTTTTCATCGCCGTC 59.835 50.000 0.00 0.00 0.00 4.79
74 78 0.589223 TTTTCGCTTTTCATCGCCGT 59.411 45.000 0.00 0.00 0.00 5.68
75 79 0.974836 GTTTTCGCTTTTCATCGCCG 59.025 50.000 0.00 0.00 0.00 6.46
77 81 0.974836 CCGTTTTCGCTTTTCATCGC 59.025 50.000 0.00 0.00 42.58 4.58
78 82 1.969256 CACCGTTTTCGCTTTTCATCG 59.031 47.619 0.00 0.00 42.58 3.84
79 83 1.713932 GCACCGTTTTCGCTTTTCATC 59.286 47.619 0.00 0.00 42.58 2.92
80 84 1.066303 TGCACCGTTTTCGCTTTTCAT 59.934 42.857 0.00 0.00 42.58 2.57
81 85 0.452184 TGCACCGTTTTCGCTTTTCA 59.548 45.000 0.00 0.00 42.58 2.69
82 86 0.843872 GTGCACCGTTTTCGCTTTTC 59.156 50.000 5.22 0.00 42.58 2.29
83 87 0.863957 CGTGCACCGTTTTCGCTTTT 60.864 50.000 12.15 0.00 42.58 2.27
84 88 1.298041 CGTGCACCGTTTTCGCTTT 60.298 52.632 12.15 0.00 42.58 3.51
85 89 2.326550 CGTGCACCGTTTTCGCTT 59.673 55.556 12.15 0.00 42.58 4.68
115 119 4.436998 GTCCTGACCACGAGCCCG 62.437 72.222 0.00 0.00 42.50 6.13
127 131 1.086067 CCATGCACAGCTACGTCCTG 61.086 60.000 12.94 12.94 36.41 3.86
167 173 1.639298 GACGGCCATCAACAGCTGAC 61.639 60.000 23.35 0.11 36.69 3.51
172 178 0.180171 TATGGGACGGCCATCAACAG 59.820 55.000 11.00 0.00 35.15 3.16
201 207 4.233789 GAGCAGATAGAATAGAAGCCGTG 58.766 47.826 0.00 0.00 0.00 4.94
207 213 5.508153 GCGACTTGGAGCAGATAGAATAGAA 60.508 44.000 0.00 0.00 0.00 2.10
208 214 4.022762 GCGACTTGGAGCAGATAGAATAGA 60.023 45.833 0.00 0.00 0.00 1.98
209 215 4.233789 GCGACTTGGAGCAGATAGAATAG 58.766 47.826 0.00 0.00 0.00 1.73
210 216 3.005897 GGCGACTTGGAGCAGATAGAATA 59.994 47.826 0.00 0.00 34.54 1.75
211 217 2.224161 GGCGACTTGGAGCAGATAGAAT 60.224 50.000 0.00 0.00 34.54 2.40
253 259 3.862394 TGCATTGCAAGCCAACGGC 62.862 57.895 9.33 0.00 40.91 5.68
254 260 1.079681 ATGCATTGCAAGCCAACGG 60.080 52.632 16.46 0.00 43.62 4.44
255 261 0.388778 TCATGCATTGCAAGCCAACG 60.389 50.000 16.46 1.04 43.62 4.10
257 263 2.418692 CTTTCATGCATTGCAAGCCAA 58.581 42.857 16.46 6.76 43.62 4.52
258 264 1.338294 CCTTTCATGCATTGCAAGCCA 60.338 47.619 16.46 4.70 43.62 4.75
259 265 1.066716 TCCTTTCATGCATTGCAAGCC 60.067 47.619 16.46 0.00 43.62 4.35
260 266 2.373540 TCCTTTCATGCATTGCAAGC 57.626 45.000 16.46 9.48 43.62 4.01
261 267 4.182693 TCTTCCTTTCATGCATTGCAAG 57.817 40.909 16.46 11.75 43.62 4.01
262 268 4.281435 TCTTCTTCCTTTCATGCATTGCAA 59.719 37.500 16.46 0.00 43.62 4.08
263 269 3.827876 TCTTCTTCCTTTCATGCATTGCA 59.172 39.130 14.72 14.72 44.86 4.08
264 270 4.421948 CTCTTCTTCCTTTCATGCATTGC 58.578 43.478 0.00 0.46 0.00 3.56
265 271 4.677250 GCCTCTTCTTCCTTTCATGCATTG 60.677 45.833 0.00 0.00 0.00 2.82
266 272 3.446516 GCCTCTTCTTCCTTTCATGCATT 59.553 43.478 0.00 0.00 0.00 3.56
267 273 3.022406 GCCTCTTCTTCCTTTCATGCAT 58.978 45.455 0.00 0.00 0.00 3.96
268 274 2.224843 TGCCTCTTCTTCCTTTCATGCA 60.225 45.455 0.00 0.00 0.00 3.96
269 275 2.422832 CTGCCTCTTCTTCCTTTCATGC 59.577 50.000 0.00 0.00 0.00 4.06
270 276 3.683802 ACTGCCTCTTCTTCCTTTCATG 58.316 45.455 0.00 0.00 0.00 3.07
271 277 4.379302 AACTGCCTCTTCTTCCTTTCAT 57.621 40.909 0.00 0.00 0.00 2.57
272 278 3.864789 AACTGCCTCTTCTTCCTTTCA 57.135 42.857 0.00 0.00 0.00 2.69
273 279 4.580580 TCAAAACTGCCTCTTCTTCCTTTC 59.419 41.667 0.00 0.00 0.00 2.62
274 280 4.339530 GTCAAAACTGCCTCTTCTTCCTTT 59.660 41.667 0.00 0.00 0.00 3.11
275 281 3.885901 GTCAAAACTGCCTCTTCTTCCTT 59.114 43.478 0.00 0.00 0.00 3.36
276 282 3.137360 AGTCAAAACTGCCTCTTCTTCCT 59.863 43.478 0.00 0.00 33.32 3.36
277 283 3.481453 AGTCAAAACTGCCTCTTCTTCC 58.519 45.455 0.00 0.00 33.32 3.46
278 284 4.819088 AGAAGTCAAAACTGCCTCTTCTTC 59.181 41.667 0.00 0.00 38.54 2.87
281 287 4.024472 GTCAGAAGTCAAAACTGCCTCTTC 60.024 45.833 0.00 0.00 35.36 2.87
284 290 2.550180 GGTCAGAAGTCAAAACTGCCTC 59.450 50.000 0.00 0.00 35.36 4.70
286 292 2.291741 CAGGTCAGAAGTCAAAACTGCC 59.708 50.000 0.00 0.00 35.36 4.85
300 306 1.728971 GTCAGCGTTTCATCAGGTCAG 59.271 52.381 0.00 0.00 0.00 3.51
316 322 2.602217 GCTAAACAACAACCAGCGTCAG 60.602 50.000 0.00 0.00 0.00 3.51
317 323 1.332375 GCTAAACAACAACCAGCGTCA 59.668 47.619 0.00 0.00 0.00 4.35
318 324 1.602377 AGCTAAACAACAACCAGCGTC 59.398 47.619 0.00 0.00 37.32 5.19
319 325 1.675552 AGCTAAACAACAACCAGCGT 58.324 45.000 0.00 0.00 37.32 5.07
320 326 2.774439 AAGCTAAACAACAACCAGCG 57.226 45.000 0.00 0.00 37.32 5.18
321 327 3.796717 GTGAAAGCTAAACAACAACCAGC 59.203 43.478 0.00 0.00 0.00 4.85
322 328 5.248870 AGTGAAAGCTAAACAACAACCAG 57.751 39.130 0.00 0.00 0.00 4.00
323 329 4.097286 GGAGTGAAAGCTAAACAACAACCA 59.903 41.667 0.00 0.00 0.00 3.67
324 330 4.097286 TGGAGTGAAAGCTAAACAACAACC 59.903 41.667 0.00 0.00 0.00 3.77
325 331 5.243426 TGGAGTGAAAGCTAAACAACAAC 57.757 39.130 0.00 0.00 0.00 3.32
326 332 5.906113 TTGGAGTGAAAGCTAAACAACAA 57.094 34.783 0.00 0.00 0.00 2.83
327 333 5.592282 TGATTGGAGTGAAAGCTAAACAACA 59.408 36.000 0.00 0.00 0.00 3.33
386 395 8.593679 CCTTTATTTGTTTATCTTTTGTCCCCT 58.406 33.333 0.00 0.00 0.00 4.79
387 396 7.822334 CCCTTTATTTGTTTATCTTTTGTCCCC 59.178 37.037 0.00 0.00 0.00 4.81
388 397 8.372459 ACCCTTTATTTGTTTATCTTTTGTCCC 58.628 33.333 0.00 0.00 0.00 4.46
389 398 9.203421 CACCCTTTATTTGTTTATCTTTTGTCC 57.797 33.333 0.00 0.00 0.00 4.02
390 399 9.974980 TCACCCTTTATTTGTTTATCTTTTGTC 57.025 29.630 0.00 0.00 0.00 3.18
393 402 9.942850 CCATCACCCTTTATTTGTTTATCTTTT 57.057 29.630 0.00 0.00 0.00 2.27
394 403 9.100197 ACCATCACCCTTTATTTGTTTATCTTT 57.900 29.630 0.00 0.00 0.00 2.52
395 404 8.531146 CACCATCACCCTTTATTTGTTTATCTT 58.469 33.333 0.00 0.00 0.00 2.40
396 405 7.363793 GCACCATCACCCTTTATTTGTTTATCT 60.364 37.037 0.00 0.00 0.00 1.98
397 406 6.756542 GCACCATCACCCTTTATTTGTTTATC 59.243 38.462 0.00 0.00 0.00 1.75
439 2020 0.802994 TACTAATTCGTGCGCACCGG 60.803 55.000 33.23 20.99 0.00 5.28
472 2053 1.338020 GTTTTCTGTGTGGCCAAGGAG 59.662 52.381 7.24 2.96 0.00 3.69
487 2069 3.996363 GGTGGGAAGCAAATGATGTTTTC 59.004 43.478 0.00 0.00 32.01 2.29
490 2072 2.827921 GAGGTGGGAAGCAAATGATGTT 59.172 45.455 0.00 0.00 0.00 2.71
515 2097 1.633945 GGGGAGTAGAAGGGAAGCAAA 59.366 52.381 0.00 0.00 0.00 3.68
601 2205 2.743060 ACGCAGTGATGCCTGTGA 59.257 55.556 8.57 0.00 43.97 3.58
632 2289 1.475682 GAAGGGATGGAGCAAAGCTTG 59.524 52.381 0.00 0.00 39.88 4.01
644 2312 3.411517 ACGGGCTGGGAAGGGATG 61.412 66.667 0.00 0.00 0.00 3.51
648 2316 3.612247 CTGACACGGGCTGGGAAGG 62.612 68.421 0.52 0.00 0.00 3.46
737 2405 5.913514 GCAAGCTCAATGATGCTTACAATAG 59.086 40.000 15.70 7.34 46.29 1.73
738 2406 5.591472 AGCAAGCTCAATGATGCTTACAATA 59.409 36.000 15.70 0.00 46.36 1.90
740 2408 3.760151 AGCAAGCTCAATGATGCTTACAA 59.240 39.130 15.70 0.00 46.36 2.41
741 2409 3.349927 AGCAAGCTCAATGATGCTTACA 58.650 40.909 15.70 0.00 46.36 2.41
742 2410 5.490139 TTAGCAAGCTCAATGATGCTTAC 57.510 39.130 14.05 10.95 46.36 2.34
743 2411 5.824097 TGATTAGCAAGCTCAATGATGCTTA 59.176 36.000 14.05 6.79 46.36 3.09
744 2412 4.643334 TGATTAGCAAGCTCAATGATGCTT 59.357 37.500 14.05 12.95 46.36 3.91
764 2432 4.843719 TCCGCGCATGCTGCTGAT 62.844 61.111 24.62 0.00 42.25 2.90
765 2433 4.843719 ATCCGCGCATGCTGCTGA 62.844 61.111 24.62 23.60 42.25 4.26
766 2434 4.309347 GATCCGCGCATGCTGCTG 62.309 66.667 24.62 20.24 42.25 4.41
799 2467 1.314534 AATTGCATGCACGGCAGCTA 61.315 50.000 22.58 2.84 43.65 3.32
800 2468 2.162338 AAATTGCATGCACGGCAGCT 62.162 50.000 22.58 0.00 43.65 4.24
801 2469 1.738830 AAATTGCATGCACGGCAGC 60.739 52.632 22.58 8.40 43.65 5.25
806 2474 2.101835 GGGCCAAATTGCATGCACG 61.102 57.895 22.58 9.23 0.00 5.34
838 2508 2.069430 TGTCTGACACAGGTGGGCA 61.069 57.895 6.36 1.23 34.19 5.36
849 2519 2.608090 GCGTATTTAAGGCCTGTCTGAC 59.392 50.000 5.69 1.10 32.71 3.51
853 2523 2.284417 CGAAGCGTATTTAAGGCCTGTC 59.716 50.000 5.69 0.00 39.90 3.51
888 2559 1.056660 GAGAGAGGGTTGGTTGTGGA 58.943 55.000 0.00 0.00 0.00 4.02
900 2571 3.282021 CACTGAGGAAGAGAGAGAGAGG 58.718 54.545 0.00 0.00 0.00 3.69
913 2584 1.583495 CGCGTGTACTCCACTGAGGA 61.583 60.000 0.00 0.00 46.75 3.71
914 2585 1.154016 CGCGTGTACTCCACTGAGG 60.154 63.158 0.00 0.00 43.29 3.86
932 2605 3.163594 GTGCAACAATAATCGTGTCAGC 58.836 45.455 0.00 0.00 36.32 4.26
995 2711 1.365633 GGCAGGCTCCTCATCTACG 59.634 63.158 0.00 0.00 0.00 3.51
1013 2729 1.424493 GATTCCAAGCGAGGAGTGCG 61.424 60.000 0.41 0.00 39.25 5.34
1023 2739 0.465278 GCAGGAGGAGGATTCCAAGC 60.465 60.000 5.29 0.00 46.64 4.01
1306 3028 4.821589 GTTGAGCCGGCGGAGGAG 62.822 72.222 33.44 2.12 0.00 3.69
1575 3297 4.039092 ATCTGCGGCAAGGTGGCT 62.039 61.111 3.44 0.00 41.25 4.75
1579 3301 0.392193 CTCTTCATCTGCGGCAAGGT 60.392 55.000 3.44 0.00 0.00 3.50
1955 3677 3.106986 TTCATCGGCTGGCTAGGGC 62.107 63.158 0.00 0.00 37.82 5.19
2031 3756 5.220381 CAGTATATGTACACCACGATGACC 58.780 45.833 0.00 0.00 33.09 4.02
2097 3852 4.824515 CCTCGCCCCTCCTCGTCT 62.825 72.222 0.00 0.00 0.00 4.18
2576 4351 2.435805 TGTATGGAGGAGAGGATGTTGC 59.564 50.000 0.00 0.00 0.00 4.17
2577 4352 4.760530 TTGTATGGAGGAGAGGATGTTG 57.239 45.455 0.00 0.00 0.00 3.33
2578 4353 5.453903 CGAATTGTATGGAGGAGAGGATGTT 60.454 44.000 0.00 0.00 0.00 2.71
2579 4354 4.039730 CGAATTGTATGGAGGAGAGGATGT 59.960 45.833 0.00 0.00 0.00 3.06
2580 4355 4.564041 CGAATTGTATGGAGGAGAGGATG 58.436 47.826 0.00 0.00 0.00 3.51
2609 4386 1.616374 GCAAACGGATGGGGAGAAAAA 59.384 47.619 0.00 0.00 0.00 1.94
2614 4391 0.745845 CAGAGCAAACGGATGGGGAG 60.746 60.000 0.00 0.00 0.00 4.30
2616 4393 2.409870 GCAGAGCAAACGGATGGGG 61.410 63.158 0.00 0.00 0.00 4.96
2617 4397 1.372087 GAGCAGAGCAAACGGATGGG 61.372 60.000 0.00 0.00 0.00 4.00
2621 4401 0.037882 CTCAGAGCAGAGCAAACGGA 60.038 55.000 0.00 0.00 0.00 4.69
2623 4403 1.066914 GACTCAGAGCAGAGCAAACG 58.933 55.000 0.00 0.00 39.26 3.60
2640 4420 0.792640 TACGACGTTCGGTCAGAGAC 59.207 55.000 5.50 0.00 46.42 3.36
2641 4421 1.195448 GTTACGACGTTCGGTCAGAGA 59.805 52.381 5.50 0.00 46.42 3.10
2677 4457 5.130477 ACAGTTTTTAGAAGAGTCACTGGGA 59.870 40.000 7.61 0.00 35.50 4.37
2678 4458 5.368989 ACAGTTTTTAGAAGAGTCACTGGG 58.631 41.667 7.61 0.00 35.50 4.45
2720 4500 1.741394 GCCTTTGGATTTGCATGGAGC 60.741 52.381 0.00 0.00 45.96 4.70
2723 4503 5.534207 TTATAGCCTTTGGATTTGCATGG 57.466 39.130 0.00 0.00 0.00 3.66
2740 4520 9.522804 TGTTTTGCTTAGGTTGTGTTTTTATAG 57.477 29.630 0.00 0.00 0.00 1.31
2759 4557 5.921004 TTATGTTCTGCCATTTGTTTTGC 57.079 34.783 0.00 0.00 0.00 3.68
2779 4577 5.467399 CCTTAATTAATCACGACGCCCATTA 59.533 40.000 0.00 0.00 0.00 1.90
2786 4584 4.317839 CGGAAGCCTTAATTAATCACGACG 60.318 45.833 0.00 0.00 0.00 5.12
2835 4640 0.753479 ATTGTTTGTGGCCACCGACA 60.753 50.000 32.62 29.88 0.00 4.35
2838 4644 2.091541 AGATATTGTTTGTGGCCACCG 58.908 47.619 32.62 0.00 0.00 4.94
2840 4646 4.989279 ATCAGATATTGTTTGTGGCCAC 57.011 40.909 29.67 29.67 0.00 5.01
2854 4660 5.013391 TGCCTCATGGATGCTTAATCAGATA 59.987 40.000 0.00 0.00 36.98 1.98
2876 4685 2.260434 CACAGCCTTGCACCATGC 59.740 61.111 0.00 0.00 45.29 4.06
2898 4707 1.134729 GCCGCAATCCAACAATCCAAT 60.135 47.619 0.00 0.00 0.00 3.16
2919 4729 0.179000 ATTCTCCTTAGCGTGCAGGG 59.821 55.000 8.72 0.00 0.00 4.45
2929 4739 2.554142 CACAGCGATGCATTCTCCTTA 58.446 47.619 0.00 0.00 0.00 2.69
3000 4810 2.011222 GACTCTCTAGTGGTCGGTCAG 58.989 57.143 0.00 0.00 35.56 3.51
3009 4819 3.715495 GACCATGCATGACTCTCTAGTG 58.285 50.000 28.31 9.32 35.56 2.74
3014 4824 1.485838 CGCGACCATGCATGACTCTC 61.486 60.000 28.31 14.70 34.15 3.20
3015 4825 1.520120 CGCGACCATGCATGACTCT 60.520 57.895 28.31 7.04 34.15 3.24
3050 4860 1.222936 CACACTCCCATCTGGCTCC 59.777 63.158 0.00 0.00 0.00 4.70
3162 4977 2.035626 GGTAAGGCAGGGCAAGCA 59.964 61.111 2.86 0.00 0.00 3.91
3218 5033 2.298163 AGTTTTGAAGGCAGAAGCATGG 59.702 45.455 0.00 0.00 44.61 3.66
3223 5038 5.505173 TTCTGAAGTTTTGAAGGCAGAAG 57.495 39.130 0.00 0.00 37.43 2.85
3288 5106 8.510243 TTAATCCTTACTACGTACATGAGTGA 57.490 34.615 0.00 0.00 0.00 3.41
3298 5116 9.706691 CATCCACATTATTAATCCTTACTACGT 57.293 33.333 0.00 0.00 0.00 3.57
3299 5117 9.706691 ACATCCACATTATTAATCCTTACTACG 57.293 33.333 0.00 0.00 0.00 3.51
3341 5180 1.467734 CAGCAGGCAATCTCTGTGTTC 59.532 52.381 0.00 0.00 34.89 3.18
3344 5183 1.801332 GCAGCAGGCAATCTCTGTG 59.199 57.895 0.00 0.00 43.97 3.66
3456 5296 6.064717 CCTATCTACCCCTTTTGGATCTTTG 58.935 44.000 0.00 0.00 44.07 2.77
3471 5311 5.221402 CGGAAGGTACCTTTTCCTATCTACC 60.221 48.000 27.72 17.87 40.55 3.18
3481 5321 2.701951 TGTCTGTCGGAAGGTACCTTTT 59.298 45.455 27.72 7.28 36.26 2.27
3667 5507 3.566742 AGTTTTACCGACGGCATCTTTTT 59.433 39.130 15.39 0.00 0.00 1.94
3669 5509 2.482721 CAGTTTTACCGACGGCATCTTT 59.517 45.455 15.39 0.00 0.00 2.52
3671 5511 1.001633 ACAGTTTTACCGACGGCATCT 59.998 47.619 15.39 2.84 0.00 2.90
3672 5512 1.435577 ACAGTTTTACCGACGGCATC 58.564 50.000 15.39 0.33 0.00 3.91
3673 5513 2.613691 CTACAGTTTTACCGACGGCAT 58.386 47.619 15.39 0.00 0.00 4.40
3674 5514 1.337074 CCTACAGTTTTACCGACGGCA 60.337 52.381 15.39 0.00 0.00 5.69
3677 5517 3.905784 AGTTCCTACAGTTTTACCGACG 58.094 45.455 0.00 0.00 0.00 5.12
3679 5519 7.231317 TCTCTTTAGTTCCTACAGTTTTACCGA 59.769 37.037 0.00 0.00 0.00 4.69
3681 5521 9.551734 TTTCTCTTTAGTTCCTACAGTTTTACC 57.448 33.333 0.00 0.00 0.00 2.85
3692 5533 7.963532 TGACTGTGTATTTCTCTTTAGTTCCT 58.036 34.615 0.00 0.00 0.00 3.36
3693 5534 8.603242 TTGACTGTGTATTTCTCTTTAGTTCC 57.397 34.615 0.00 0.00 0.00 3.62
3700 5541 4.631813 GCCGATTGACTGTGTATTTCTCTT 59.368 41.667 0.00 0.00 0.00 2.85
3712 5553 2.666619 GCAGAGTTTTGCCGATTGACTG 60.667 50.000 0.00 0.00 38.13 3.51
3801 5646 4.847444 GGAGGCGAGGAAGCAGGC 62.847 72.222 0.00 0.00 39.27 4.85
3821 5666 4.059459 CAAGCCGTGACGTCGCAC 62.059 66.667 27.16 18.54 35.46 5.34
3824 5669 2.126618 TAGCAAGCCGTGACGTCG 60.127 61.111 11.62 0.00 0.00 5.12
3845 5690 4.415332 CGACGACGACACTGGGGG 62.415 72.222 0.00 0.00 42.66 5.40
3850 5695 3.251974 GGAGACGACGACGACACT 58.748 61.111 15.32 9.84 42.66 3.55
3871 5716 0.252103 TAAGGCCGAGTGAGGACCTT 60.252 55.000 0.00 13.33 44.29 3.50
3879 5724 1.134367 TGACTTCGATAAGGCCGAGTG 59.866 52.381 0.00 0.00 40.37 3.51
3883 5728 1.659098 GTGTTGACTTCGATAAGGCCG 59.341 52.381 0.00 0.00 40.37 6.13
3885 5730 3.424962 GCAAGTGTTGACTTCGATAAGGC 60.425 47.826 0.00 0.00 40.68 4.35
3889 5734 3.740832 CAGTGCAAGTGTTGACTTCGATA 59.259 43.478 0.00 0.00 40.68 2.92
3891 5736 1.933181 CAGTGCAAGTGTTGACTTCGA 59.067 47.619 0.00 0.00 40.68 3.71
3892 5737 1.933181 TCAGTGCAAGTGTTGACTTCG 59.067 47.619 0.00 0.00 40.68 3.79
3893 5738 2.939103 AGTCAGTGCAAGTGTTGACTTC 59.061 45.455 11.15 0.00 45.80 3.01
3894 5739 2.991250 AGTCAGTGCAAGTGTTGACTT 58.009 42.857 11.15 0.00 45.80 3.01
3895 5740 2.698855 AGTCAGTGCAAGTGTTGACT 57.301 45.000 11.15 11.15 43.89 3.41
3896 5741 1.258982 CGAGTCAGTGCAAGTGTTGAC 59.741 52.381 0.00 0.00 38.75 3.18
3897 5742 1.136110 TCGAGTCAGTGCAAGTGTTGA 59.864 47.619 0.00 0.00 38.75 3.18
3898 5743 1.570813 TCGAGTCAGTGCAAGTGTTG 58.429 50.000 0.00 0.00 38.75 3.33
3899 5744 1.933853 GTTCGAGTCAGTGCAAGTGTT 59.066 47.619 0.00 0.00 38.75 3.32
3900 5745 1.571919 GTTCGAGTCAGTGCAAGTGT 58.428 50.000 0.00 0.00 38.75 3.55
3901 5746 0.861837 GGTTCGAGTCAGTGCAAGTG 59.138 55.000 0.00 0.00 39.10 3.16
3902 5747 0.249911 GGGTTCGAGTCAGTGCAAGT 60.250 55.000 0.00 0.00 0.00 3.16
3903 5748 0.249868 TGGGTTCGAGTCAGTGCAAG 60.250 55.000 0.00 0.00 0.00 4.01
3905 5750 0.320683 CATGGGTTCGAGTCAGTGCA 60.321 55.000 0.00 0.00 0.00 4.57
3906 5751 0.037326 TCATGGGTTCGAGTCAGTGC 60.037 55.000 0.00 0.00 0.00 4.40
3909 5754 0.898320 AGGTCATGGGTTCGAGTCAG 59.102 55.000 0.00 0.00 0.00 3.51
3929 5805 2.819608 GAGCTGTTGCCTTTTGACCATA 59.180 45.455 0.00 0.00 40.80 2.74
3937 5813 0.955919 GCGGTAGAGCTGTTGCCTTT 60.956 55.000 0.00 0.00 40.80 3.11
3948 5824 2.586079 CATGGCGTGGCGGTAGAG 60.586 66.667 0.00 0.00 0.00 2.43
3957 5833 6.425135 AGTACTAATACAAAGCCATGGCGTG 61.425 44.000 30.72 30.72 38.86 5.34
3958 5834 4.383770 AGTACTAATACAAAGCCATGGCGT 60.384 41.667 30.50 25.65 38.86 5.68
4108 6143 8.740123 TGACTTTGTTTGAAGGTGTTATTCTA 57.260 30.769 0.00 0.00 0.00 2.10
4109 6144 7.639113 TGACTTTGTTTGAAGGTGTTATTCT 57.361 32.000 0.00 0.00 0.00 2.40
4110 6145 8.592155 GTTTGACTTTGTTTGAAGGTGTTATTC 58.408 33.333 0.00 0.00 0.00 1.75
4111 6146 8.091449 TGTTTGACTTTGTTTGAAGGTGTTATT 58.909 29.630 0.00 0.00 0.00 1.40
4113 6148 6.982852 TGTTTGACTTTGTTTGAAGGTGTTA 58.017 32.000 0.00 0.00 0.00 2.41
4114 6149 5.848406 TGTTTGACTTTGTTTGAAGGTGTT 58.152 33.333 0.00 0.00 0.00 3.32
4115 6150 5.461032 TGTTTGACTTTGTTTGAAGGTGT 57.539 34.783 0.00 0.00 0.00 4.16
4116 6151 6.777526 TTTGTTTGACTTTGTTTGAAGGTG 57.222 33.333 0.00 0.00 0.00 4.00
4117 6152 6.371271 CCATTTGTTTGACTTTGTTTGAAGGT 59.629 34.615 0.00 0.00 0.00 3.50
4118 6153 6.675244 GCCATTTGTTTGACTTTGTTTGAAGG 60.675 38.462 0.00 0.00 0.00 3.46
4119 6154 6.128336 TGCCATTTGTTTGACTTTGTTTGAAG 60.128 34.615 0.00 0.00 0.00 3.02
4120 6155 5.702670 TGCCATTTGTTTGACTTTGTTTGAA 59.297 32.000 0.00 0.00 0.00 2.69
4121 6156 5.240891 TGCCATTTGTTTGACTTTGTTTGA 58.759 33.333 0.00 0.00 0.00 2.69
4122 6157 5.542616 TGCCATTTGTTTGACTTTGTTTG 57.457 34.783 0.00 0.00 0.00 2.93
4123 6158 6.019156 CGTATGCCATTTGTTTGACTTTGTTT 60.019 34.615 0.00 0.00 0.00 2.83
4128 6163 4.846779 ACGTATGCCATTTGTTTGACTT 57.153 36.364 0.00 0.00 0.00 3.01
4142 6177 4.509970 TGATTGCTTACCATGTACGTATGC 59.490 41.667 0.00 9.90 37.37 3.14
4191 6234 5.163237 ACAAAACTGAGGTCCTTTAGCAGTA 60.163 40.000 10.54 0.00 38.74 2.74
4204 6265 2.233271 ACATGGAGCACAAAACTGAGG 58.767 47.619 0.00 0.00 0.00 3.86
4228 6289 9.965902 ACATTAGGAAGACTGTTATCAAATTCT 57.034 29.630 0.00 0.00 0.00 2.40
4237 6298 9.139734 ACGGATATAACATTAGGAAGACTGTTA 57.860 33.333 0.00 0.00 38.16 2.41
4289 6350 9.643693 GTCAAATGACATACCATGAATTTCTTT 57.356 29.630 8.63 0.00 44.18 2.52
4310 6371 8.145767 TCGAGATTTAACCAAGTCTTAGTCAAA 58.854 33.333 0.00 0.00 31.40 2.69
4312 6373 7.223260 TCGAGATTTAACCAAGTCTTAGTCA 57.777 36.000 0.00 0.00 31.40 3.41
4317 6378 5.582665 GCTGATCGAGATTTAACCAAGTCTT 59.417 40.000 0.00 0.00 31.40 3.01
4325 6386 8.755696 AATGAGATAGCTGATCGAGATTTAAC 57.244 34.615 0.00 0.00 39.80 2.01
4555 6616 0.101399 CGTCGAGGAGGATGTTGGAG 59.899 60.000 0.00 0.00 0.00 3.86
4846 6907 2.920912 AAGGACGCCGAGGAACCA 60.921 61.111 0.00 0.00 0.00 3.67
4849 6910 2.697761 CGAGAAGGACGCCGAGGAA 61.698 63.158 0.00 0.00 0.00 3.36
5156 7223 5.939883 TCAGGTGATAACCAATTCTGACAAG 59.060 40.000 0.85 0.00 0.00 3.16
5190 7259 8.785329 AAAAATTAACCAAGTGCAAAGAAAGA 57.215 26.923 0.00 0.00 0.00 2.52
5288 7357 8.073768 TCAAAATAATTTCACAGAACGGAGAAC 58.926 33.333 0.00 0.00 0.00 3.01
5343 7412 5.296035 GGATCCGTGTTGAAAATACCCTTAG 59.704 44.000 0.00 0.00 34.07 2.18
5350 7425 5.765677 TGTTTGAGGATCCGTGTTGAAAATA 59.234 36.000 5.98 0.00 0.00 1.40
5353 7428 3.546724 TGTTTGAGGATCCGTGTTGAAA 58.453 40.909 5.98 0.00 0.00 2.69
5365 7440 2.290641 ACATATGCGGGTTGTTTGAGGA 60.291 45.455 1.58 0.00 0.00 3.71
5431 7506 2.758979 GACTGGTCCACGGAGAAATAGA 59.241 50.000 0.00 0.00 0.00 1.98
5464 7539 4.181309 TGCTCAAGTTTGTTTTCGGTTT 57.819 36.364 0.00 0.00 0.00 3.27
5465 7540 3.859411 TGCTCAAGTTTGTTTTCGGTT 57.141 38.095 0.00 0.00 0.00 4.44
5473 7550 3.942748 TCGTAAACCTTGCTCAAGTTTGT 59.057 39.130 8.60 0.00 36.72 2.83
5522 7599 7.781324 ATTAGACAGTTGGATGATGGTTTTT 57.219 32.000 0.00 0.00 0.00 1.94
5523 7600 8.877864 TTATTAGACAGTTGGATGATGGTTTT 57.122 30.769 0.00 0.00 0.00 2.43
5524 7601 8.877864 TTTATTAGACAGTTGGATGATGGTTT 57.122 30.769 0.00 0.00 0.00 3.27
5525 7602 8.877864 TTTTATTAGACAGTTGGATGATGGTT 57.122 30.769 0.00 0.00 0.00 3.67
5526 7603 8.877864 TTTTTATTAGACAGTTGGATGATGGT 57.122 30.769 0.00 0.00 0.00 3.55
5548 7625 2.300433 GAAGGGTACGTGGTGGTTTTT 58.700 47.619 0.00 0.00 0.00 1.94
5611 7692 6.248631 GCATACTAATCACCTTTCGTCAAAC 58.751 40.000 0.00 0.00 0.00 2.93
5619 7700 4.081087 ACGTGAGGCATACTAATCACCTTT 60.081 41.667 0.00 0.00 39.06 3.11
5636 7717 2.556287 GCTTCCGCCAAACGTGAG 59.444 61.111 0.00 0.00 41.42 3.51
5741 7822 1.064463 TGGATTGACTTGAGGATGGCC 60.064 52.381 0.00 0.00 0.00 5.36
5750 7831 1.066573 AGCTCCGACTGGATTGACTTG 60.067 52.381 0.00 0.00 45.33 3.16
5807 7888 4.929808 ACAACTTCTGTATCTAAAGTGCGG 59.070 41.667 0.00 0.00 36.10 5.69
5815 7896 9.140286 CGAAGATTTTGACAACTTCTGTATCTA 57.860 33.333 12.57 0.00 38.84 1.98
5822 7903 5.047847 TCGTCGAAGATTTTGACAACTTCT 58.952 37.500 12.57 4.90 42.96 2.85
5825 7906 4.116961 TGTCGTCGAAGATTTTGACAACT 58.883 39.130 3.90 0.00 42.96 3.16
5828 7909 4.116961 ACTTGTCGTCGAAGATTTTGACA 58.883 39.130 3.90 0.00 42.96 3.58
5848 7929 9.710818 TGTAGATCAAACTACCCTATTTCTACT 57.289 33.333 0.00 0.00 41.15 2.57
5895 7976 8.690203 TGACTGACCTAAATTCAATTTTCAGA 57.310 30.769 21.95 5.61 37.04 3.27
5911 7992 2.289694 CGGACAGGAAATTGACTGACCT 60.290 50.000 20.40 0.00 43.96 3.85
5925 8007 2.093973 AGAGCAGTAATCAACGGACAGG 60.094 50.000 0.00 0.00 0.00 4.00
5928 8010 4.995124 TCTTAGAGCAGTAATCAACGGAC 58.005 43.478 0.00 0.00 0.00 4.79
5965 8047 4.798882 AGACACCCCACACAATAGAAAAA 58.201 39.130 0.00 0.00 0.00 1.94
5966 8048 4.447138 AGACACCCCACACAATAGAAAA 57.553 40.909 0.00 0.00 0.00 2.29
5967 8049 4.141287 CAAGACACCCCACACAATAGAAA 58.859 43.478 0.00 0.00 0.00 2.52
5968 8050 3.137544 ACAAGACACCCCACACAATAGAA 59.862 43.478 0.00 0.00 0.00 2.10
5969 8051 2.708861 ACAAGACACCCCACACAATAGA 59.291 45.455 0.00 0.00 0.00 1.98
5970 8052 3.140325 ACAAGACACCCCACACAATAG 57.860 47.619 0.00 0.00 0.00 1.73
5971 8053 3.218453 CAACAAGACACCCCACACAATA 58.782 45.455 0.00 0.00 0.00 1.90
5972 8054 2.031120 CAACAAGACACCCCACACAAT 58.969 47.619 0.00 0.00 0.00 2.71
5973 8055 1.272203 ACAACAAGACACCCCACACAA 60.272 47.619 0.00 0.00 0.00 3.33
5974 8056 0.329931 ACAACAAGACACCCCACACA 59.670 50.000 0.00 0.00 0.00 3.72
5975 8057 0.738389 CACAACAAGACACCCCACAC 59.262 55.000 0.00 0.00 0.00 3.82
5981 8063 1.263217 CTAACCGCACAACAAGACACC 59.737 52.381 0.00 0.00 0.00 4.16
5995 8077 4.434330 GCTCGTGAAAGAATTGACTAACCG 60.434 45.833 0.00 0.00 0.00 4.44
5999 8081 3.679980 GCAGCTCGTGAAAGAATTGACTA 59.320 43.478 0.00 0.00 0.00 2.59
6001 8083 2.413371 GGCAGCTCGTGAAAGAATTGAC 60.413 50.000 0.00 0.00 0.00 3.18
6011 8093 1.474478 CTAGAAAGAGGCAGCTCGTGA 59.526 52.381 0.00 0.00 0.00 4.35
6016 8098 0.911525 TGGGCTAGAAAGAGGCAGCT 60.912 55.000 0.00 0.00 43.66 4.24
6026 8108 4.265856 TGAGGAGTTAGATGGGCTAGAA 57.734 45.455 0.00 0.00 0.00 2.10
6039 8121 1.435168 AGAGAGGAGGGTTGAGGAGTT 59.565 52.381 0.00 0.00 0.00 3.01
6048 8130 1.222567 GGAGAGAGAGAGAGGAGGGT 58.777 60.000 0.00 0.00 0.00 4.34
6049 8131 0.478507 GGGAGAGAGAGAGAGGAGGG 59.521 65.000 0.00 0.00 0.00 4.30
6050 8132 1.522900 AGGGAGAGAGAGAGAGGAGG 58.477 60.000 0.00 0.00 0.00 4.30
6051 8133 3.669939 AAAGGGAGAGAGAGAGAGGAG 57.330 52.381 0.00 0.00 0.00 3.69
6079 8161 1.295423 GGGCTAACAGAGTGCGGAA 59.705 57.895 0.00 0.00 0.00 4.30
6081 8163 0.811616 GATGGGCTAACAGAGTGCGG 60.812 60.000 0.00 0.00 0.00 5.69
6083 8165 3.543680 TTAGATGGGCTAACAGAGTGC 57.456 47.619 0.00 0.00 34.21 4.40
6091 8173 1.760613 CGACAGGGTTAGATGGGCTAA 59.239 52.381 0.00 0.00 36.75 3.09
6092 8174 1.410004 CGACAGGGTTAGATGGGCTA 58.590 55.000 0.00 0.00 0.00 3.93
6093 8175 1.338136 CCGACAGGGTTAGATGGGCT 61.338 60.000 0.00 0.00 0.00 5.19
6094 8176 1.146263 CCGACAGGGTTAGATGGGC 59.854 63.158 0.00 0.00 0.00 5.36
6095 8177 1.146263 GCCGACAGGGTTAGATGGG 59.854 63.158 0.00 0.00 38.44 4.00
6096 8178 4.857251 GCCGACAGGGTTAGATGG 57.143 61.111 0.00 0.00 38.44 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.