Multiple sequence alignment - TraesCS4A01G239200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G239200 chr4A 100.000 2336 0 0 1 2336 548514335 548516670 0.000000e+00 4314.0
1 TraesCS4A01G239200 chr4A 100.000 29 0 0 1924 1952 548516230 548516258 1.000000e-03 54.7
2 TraesCS4A01G239200 chr4A 100.000 29 0 0 1896 1924 548516258 548516286 1.000000e-03 54.7
3 TraesCS4A01G239200 chr4D 95.122 779 38 0 687 1465 48719902 48719124 0.000000e+00 1229.0
4 TraesCS4A01G239200 chr4D 96.652 687 20 2 1 685 48720624 48719939 0.000000e+00 1138.0
5 TraesCS4A01G239200 chr4D 84.127 189 30 0 1735 1923 35597646 35597834 1.430000e-42 183.0
6 TraesCS4A01G239200 chr2D 94.673 413 22 0 1924 2336 101979717 101979305 1.960000e-180 641.0
7 TraesCS4A01G239200 chr2D 95.767 189 8 0 1735 1923 101979878 101979690 2.920000e-79 305.0
8 TraesCS4A01G239200 chr2A 94.189 413 24 0 1924 2336 755932097 755931685 4.240000e-177 630.0
9 TraesCS4A01G239200 chr2A 94.845 97 5 0 1827 1923 755932166 755932070 4.020000e-33 152.0
10 TraesCS4A01G239200 chr4B 91.480 446 31 5 687 1129 71601229 71600788 7.140000e-170 606.0
11 TraesCS4A01G239200 chr4B 90.112 445 32 3 252 685 71601709 71601266 3.370000e-158 568.0
12 TraesCS4A01G239200 chr4B 89.826 344 27 3 1127 1470 71600625 71600290 3.560000e-118 435.0
13 TraesCS4A01G239200 chr4B 90.230 174 17 0 64 237 71601868 71601695 6.490000e-56 228.0
14 TraesCS4A01G239200 chr4B 85.185 189 27 1 1735 1923 66008785 66008972 2.370000e-45 193.0
15 TraesCS4A01G239200 chr4B 90.244 41 4 0 1998 2038 390408040 390408080 1.000000e-03 54.7
16 TraesCS4A01G239200 chr2B 83.887 602 69 16 1735 2336 400366339 400366912 1.220000e-152 549.0
17 TraesCS4A01G239200 chr2B 74.129 402 90 9 1938 2336 101239314 101238924 1.120000e-33 154.0
18 TraesCS4A01G239200 chr3D 79.653 403 52 13 1736 2138 441132042 441131670 1.780000e-66 263.0
19 TraesCS4A01G239200 chr3D 85.263 95 14 0 2211 2305 431991490 431991396 5.310000e-17 99.0
20 TraesCS4A01G239200 chr3B 86.580 231 30 1 2106 2336 697980906 697980677 1.070000e-63 254.0
21 TraesCS4A01G239200 chr3B 93.056 72 3 2 1829 1900 697982047 697981978 1.140000e-18 104.0
22 TraesCS4A01G239200 chr1A 81.006 179 23 9 2159 2336 582773476 582773308 5.240000e-27 132.0
23 TraesCS4A01G239200 chr1A 94.286 35 2 0 2010 2044 94240551 94240517 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G239200 chr4A 548514335 548516670 2335 False 1474.466667 4314 100.000 1 2336 3 chr4A.!!$F1 2335
1 TraesCS4A01G239200 chr4D 48719124 48720624 1500 True 1183.500000 1229 95.887 1 1465 2 chr4D.!!$R1 1464
2 TraesCS4A01G239200 chr2D 101979305 101979878 573 True 473.000000 641 95.220 1735 2336 2 chr2D.!!$R1 601
3 TraesCS4A01G239200 chr4B 71600290 71601868 1578 True 459.250000 606 90.412 64 1470 4 chr4B.!!$R1 1406
4 TraesCS4A01G239200 chr2B 400366339 400366912 573 False 549.000000 549 83.887 1735 2336 1 chr2B.!!$F1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 1003 0.257328 TCTGTGTGCAGGAAACCCAA 59.743 50.0 0.0 0.0 42.78 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1925 2140 0.036105 TCATGGATGCTGCGTCACTT 60.036 50.0 22.2 8.18 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 6.238566 CCATCAACAGTGAAATCTCGCATATT 60.239 38.462 0.00 0.00 37.30 1.28
103 104 3.650070 TTGCAGTATCTCCTAGATGCG 57.350 47.619 0.00 0.00 41.40 4.73
209 210 3.023119 CCACTGCCCATAACAAAGCATA 58.977 45.455 0.00 0.00 34.16 3.14
241 242 5.411361 TGATGAAAGGTGTTCTGTTAATCCG 59.589 40.000 0.00 0.00 0.00 4.18
245 246 6.766944 TGAAAGGTGTTCTGTTAATCCGTTTA 59.233 34.615 0.00 0.00 0.00 2.01
606 618 6.119536 TGAGTTCTCCAGTTGTTGTATTTGT 58.880 36.000 0.00 0.00 0.00 2.83
694 741 0.450184 ATATTTCGCCGTGGCACAAC 59.550 50.000 19.09 7.64 44.16 3.32
746 794 7.392953 TGGTTGATGATTTTGCATCTACTGTAA 59.607 33.333 14.90 0.00 44.69 2.41
897 946 5.417580 GCACTCCATTTTATGAACCTTACCA 59.582 40.000 0.00 0.00 0.00 3.25
921 970 7.554118 CCATGTGAAGTTATTTGGATACTCACT 59.446 37.037 0.00 0.00 37.61 3.41
940 989 5.761003 TCACTGTGTTTGCATTTATCTGTG 58.239 37.500 7.79 0.00 0.00 3.66
954 1003 0.257328 TCTGTGTGCAGGAAACCCAA 59.743 50.000 0.00 0.00 42.78 4.12
995 1044 8.705594 TCAAGAGTAGGTTCCTATAAATTCTGG 58.294 37.037 1.73 0.62 0.00 3.86
1020 1069 0.776810 TGGAAATGGGAGACAAGGCA 59.223 50.000 0.00 0.00 0.00 4.75
1174 1389 4.982295 GGTGATTTTGTTTCTCTTTTCCCG 59.018 41.667 0.00 0.00 0.00 5.14
1221 1436 6.158598 CCATTTTGTCCACCAATACTTTCTG 58.841 40.000 0.00 0.00 31.81 3.02
1345 1560 1.188863 GGCTGCTTGATGGATTTGGT 58.811 50.000 0.00 0.00 0.00 3.67
1354 1569 1.566231 GATGGATTTGGTGACTCCCCT 59.434 52.381 0.00 0.00 34.77 4.79
1357 1572 0.681243 GATTTGGTGACTCCCCTGCC 60.681 60.000 0.00 0.00 34.77 4.85
1359 1574 4.631740 TGGTGACTCCCCTGCCGA 62.632 66.667 0.00 0.00 34.77 5.54
1404 1619 9.271828 GTACTTATAGAACCTAGTAGACAGGTC 57.728 40.741 0.00 0.00 45.90 3.85
1406 1621 8.559175 ACTTATAGAACCTAGTAGACAGGTCTT 58.441 37.037 7.33 0.00 45.90 3.01
1427 1642 8.902806 GGTCTTGTGGATGATTGTATTTCATTA 58.097 33.333 0.00 0.00 34.03 1.90
1438 1653 9.299963 TGATTGTATTTCATTAAATTGCCTTCG 57.700 29.630 0.00 0.00 36.67 3.79
1470 1685 3.963428 AGGCTTTCTCGTGACACTTAT 57.037 42.857 3.68 0.00 0.00 1.73
1471 1686 3.589988 AGGCTTTCTCGTGACACTTATG 58.410 45.455 3.68 0.00 0.00 1.90
1472 1687 3.006967 AGGCTTTCTCGTGACACTTATGT 59.993 43.478 3.68 0.00 43.71 2.29
1495 1710 9.986157 ATGTCATAAATTAGATCTAATGGGCAT 57.014 29.630 25.16 22.08 36.04 4.40
1496 1711 9.812347 TGTCATAAATTAGATCTAATGGGCATT 57.188 29.630 25.16 17.85 36.04 3.56
1499 1714 9.362539 CATAAATTAGATCTAATGGGCATTTGC 57.637 33.333 25.16 0.00 36.04 3.68
1500 1715 6.982160 AATTAGATCTAATGGGCATTTGCA 57.018 33.333 25.16 0.00 38.04 4.08
1501 1716 7.549147 AATTAGATCTAATGGGCATTTGCAT 57.451 32.000 25.16 5.58 38.04 3.96
1502 1717 4.866508 AGATCTAATGGGCATTTGCATG 57.133 40.909 4.74 0.00 44.36 4.06
1503 1718 4.220724 AGATCTAATGGGCATTTGCATGT 58.779 39.130 4.74 0.00 44.36 3.21
1504 1719 4.652421 AGATCTAATGGGCATTTGCATGTT 59.348 37.500 4.74 0.00 44.36 2.71
1505 1720 4.389890 TCTAATGGGCATTTGCATGTTC 57.610 40.909 4.74 0.00 44.36 3.18
1506 1721 4.025360 TCTAATGGGCATTTGCATGTTCT 58.975 39.130 4.74 0.00 44.36 3.01
1507 1722 3.706600 AATGGGCATTTGCATGTTCTT 57.293 38.095 4.74 0.00 44.36 2.52
1508 1723 2.459060 TGGGCATTTGCATGTTCTTG 57.541 45.000 4.74 0.00 44.36 3.02
1509 1724 1.002201 TGGGCATTTGCATGTTCTTGG 59.998 47.619 4.74 0.00 44.36 3.61
1510 1725 1.002315 GGGCATTTGCATGTTCTTGGT 59.998 47.619 4.74 0.00 44.36 3.67
1511 1726 2.233431 GGGCATTTGCATGTTCTTGGTA 59.767 45.455 4.74 0.00 44.36 3.25
1512 1727 3.514645 GGCATTTGCATGTTCTTGGTAG 58.485 45.455 4.74 0.00 44.36 3.18
1513 1728 3.056607 GGCATTTGCATGTTCTTGGTAGT 60.057 43.478 4.74 0.00 44.36 2.73
1514 1729 4.559153 GCATTTGCATGTTCTTGGTAGTT 58.441 39.130 0.00 0.00 41.59 2.24
1515 1730 4.990426 GCATTTGCATGTTCTTGGTAGTTT 59.010 37.500 0.00 0.00 41.59 2.66
1516 1731 6.155827 GCATTTGCATGTTCTTGGTAGTTTA 58.844 36.000 0.00 0.00 41.59 2.01
1517 1732 6.089417 GCATTTGCATGTTCTTGGTAGTTTAC 59.911 38.462 0.00 0.00 41.59 2.01
1518 1733 6.952773 TTTGCATGTTCTTGGTAGTTTACT 57.047 33.333 0.00 0.00 0.00 2.24
1519 1734 5.940192 TGCATGTTCTTGGTAGTTTACTG 57.060 39.130 0.00 0.00 0.00 2.74
1520 1735 5.616270 TGCATGTTCTTGGTAGTTTACTGA 58.384 37.500 0.00 0.00 0.00 3.41
1521 1736 6.237901 TGCATGTTCTTGGTAGTTTACTGAT 58.762 36.000 0.00 0.00 0.00 2.90
1522 1737 6.149308 TGCATGTTCTTGGTAGTTTACTGATG 59.851 38.462 0.00 0.00 0.00 3.07
1523 1738 6.403636 GCATGTTCTTGGTAGTTTACTGATGG 60.404 42.308 0.00 0.00 0.00 3.51
1524 1739 5.001232 TGTTCTTGGTAGTTTACTGATGGC 58.999 41.667 0.00 0.00 0.00 4.40
1525 1740 4.901197 TCTTGGTAGTTTACTGATGGCA 57.099 40.909 0.00 0.00 0.00 4.92
1526 1741 5.235850 TCTTGGTAGTTTACTGATGGCAA 57.764 39.130 0.00 0.00 0.00 4.52
1527 1742 5.245531 TCTTGGTAGTTTACTGATGGCAAG 58.754 41.667 0.00 0.00 0.00 4.01
1528 1743 3.950397 TGGTAGTTTACTGATGGCAAGG 58.050 45.455 0.00 0.00 0.00 3.61
1529 1744 3.329520 TGGTAGTTTACTGATGGCAAGGT 59.670 43.478 0.00 0.00 0.00 3.50
1530 1745 3.689649 GGTAGTTTACTGATGGCAAGGTG 59.310 47.826 0.00 0.00 0.00 4.00
1531 1746 2.162681 AGTTTACTGATGGCAAGGTGC 58.837 47.619 0.00 0.00 44.08 5.01
1539 1754 1.479323 GATGGCAAGGTGCATGACATT 59.521 47.619 8.50 0.00 46.40 2.71
1540 1755 1.479323 ATGGCAAGGTGCATGACATTC 59.521 47.619 1.07 0.00 44.05 2.67
1541 1756 3.727419 GCAAGGTGCATGACATTCC 57.273 52.632 0.00 0.00 44.26 3.01
1542 1757 0.889994 GCAAGGTGCATGACATTCCA 59.110 50.000 0.00 0.00 44.26 3.53
1543 1758 1.273048 GCAAGGTGCATGACATTCCAA 59.727 47.619 0.00 0.00 44.26 3.53
1544 1759 2.673043 GCAAGGTGCATGACATTCCAAG 60.673 50.000 0.00 0.00 44.26 3.61
1545 1760 2.821378 CAAGGTGCATGACATTCCAAGA 59.179 45.455 0.00 0.00 0.00 3.02
1546 1761 3.159213 AGGTGCATGACATTCCAAGAA 57.841 42.857 0.00 0.00 0.00 2.52
1547 1762 3.705051 AGGTGCATGACATTCCAAGAAT 58.295 40.909 0.00 0.00 0.00 2.40
1548 1763 3.446161 AGGTGCATGACATTCCAAGAATG 59.554 43.478 14.25 14.25 0.00 2.67
1549 1764 3.444742 GGTGCATGACATTCCAAGAATGA 59.555 43.478 20.97 3.28 0.00 2.57
1550 1765 4.082081 GGTGCATGACATTCCAAGAATGAA 60.082 41.667 20.97 10.79 0.00 2.57
1551 1766 4.860907 GTGCATGACATTCCAAGAATGAAC 59.139 41.667 20.97 14.72 0.00 3.18
1552 1767 4.100529 GCATGACATTCCAAGAATGAACG 58.899 43.478 20.97 9.31 0.00 3.95
1553 1768 4.379813 GCATGACATTCCAAGAATGAACGT 60.380 41.667 20.97 13.28 0.00 3.99
1554 1769 5.702865 CATGACATTCCAAGAATGAACGTT 58.297 37.500 20.97 0.00 0.00 3.99
1555 1770 5.107109 TGACATTCCAAGAATGAACGTTG 57.893 39.130 20.97 0.00 0.00 4.10
1556 1771 4.023279 TGACATTCCAAGAATGAACGTTGG 60.023 41.667 20.97 0.00 41.92 3.77
1557 1772 3.888930 ACATTCCAAGAATGAACGTTGGT 59.111 39.130 20.97 0.00 41.39 3.67
1558 1773 4.023193 ACATTCCAAGAATGAACGTTGGTC 60.023 41.667 20.97 0.00 41.39 4.02
1559 1774 3.201353 TCCAAGAATGAACGTTGGTCA 57.799 42.857 5.00 0.00 41.39 4.02
1560 1775 3.546724 TCCAAGAATGAACGTTGGTCAA 58.453 40.909 5.00 0.00 41.39 3.18
1561 1776 3.948473 TCCAAGAATGAACGTTGGTCAAA 59.052 39.130 5.00 0.00 41.39 2.69
1562 1777 4.582656 TCCAAGAATGAACGTTGGTCAAAT 59.417 37.500 5.00 0.00 41.39 2.32
1563 1778 5.765677 TCCAAGAATGAACGTTGGTCAAATA 59.234 36.000 5.00 0.00 41.39 1.40
1564 1779 6.432783 TCCAAGAATGAACGTTGGTCAAATAT 59.567 34.615 5.00 0.00 41.39 1.28
1565 1780 6.747280 CCAAGAATGAACGTTGGTCAAATATC 59.253 38.462 5.00 0.00 36.70 1.63
1566 1781 7.304735 CAAGAATGAACGTTGGTCAAATATCA 58.695 34.615 5.00 0.00 0.00 2.15
1567 1782 7.447374 AGAATGAACGTTGGTCAAATATCAA 57.553 32.000 5.00 0.00 0.00 2.57
1568 1783 7.530010 AGAATGAACGTTGGTCAAATATCAAG 58.470 34.615 5.00 0.00 0.00 3.02
1569 1784 6.817765 ATGAACGTTGGTCAAATATCAAGT 57.182 33.333 5.00 0.00 0.00 3.16
1570 1785 5.996219 TGAACGTTGGTCAAATATCAAGTG 58.004 37.500 5.00 0.00 0.00 3.16
1571 1786 5.529430 TGAACGTTGGTCAAATATCAAGTGT 59.471 36.000 5.00 0.00 0.00 3.55
1572 1787 6.038825 TGAACGTTGGTCAAATATCAAGTGTT 59.961 34.615 5.00 0.00 0.00 3.32
1573 1788 5.757886 ACGTTGGTCAAATATCAAGTGTTG 58.242 37.500 0.00 0.00 0.00 3.33
1574 1789 4.616802 CGTTGGTCAAATATCAAGTGTTGC 59.383 41.667 0.00 0.00 0.00 4.17
1575 1790 5.562696 CGTTGGTCAAATATCAAGTGTTGCT 60.563 40.000 0.00 0.00 0.00 3.91
1576 1791 6.348132 CGTTGGTCAAATATCAAGTGTTGCTA 60.348 38.462 0.00 0.00 0.00 3.49
1577 1792 6.494893 TGGTCAAATATCAAGTGTTGCTAC 57.505 37.500 0.00 0.00 0.00 3.58
1578 1793 6.000840 TGGTCAAATATCAAGTGTTGCTACA 58.999 36.000 0.00 0.00 0.00 2.74
1579 1794 6.658816 TGGTCAAATATCAAGTGTTGCTACAT 59.341 34.615 3.85 0.00 36.50 2.29
1580 1795 7.148255 TGGTCAAATATCAAGTGTTGCTACATC 60.148 37.037 3.85 0.00 36.50 3.06
1581 1796 7.148255 GGTCAAATATCAAGTGTTGCTACATCA 60.148 37.037 3.85 0.00 36.50 3.07
1582 1797 8.236586 GTCAAATATCAAGTGTTGCTACATCAA 58.763 33.333 3.85 0.00 36.50 2.57
1583 1798 8.959548 TCAAATATCAAGTGTTGCTACATCAAT 58.040 29.630 3.85 0.00 36.50 2.57
1589 1804 8.565896 TCAAGTGTTGCTACATCAATATTTCT 57.434 30.769 3.85 0.00 36.50 2.52
1590 1805 8.668353 TCAAGTGTTGCTACATCAATATTTCTC 58.332 33.333 3.85 0.00 36.50 2.87
1591 1806 7.239166 AGTGTTGCTACATCAATATTTCTCG 57.761 36.000 3.85 0.00 36.50 4.04
1592 1807 6.258727 AGTGTTGCTACATCAATATTTCTCGG 59.741 38.462 3.85 0.00 36.50 4.63
1593 1808 6.257849 GTGTTGCTACATCAATATTTCTCGGA 59.742 38.462 3.85 0.00 36.50 4.55
1594 1809 6.992123 TGTTGCTACATCAATATTTCTCGGAT 59.008 34.615 0.00 0.00 0.00 4.18
1595 1810 7.498900 TGTTGCTACATCAATATTTCTCGGATT 59.501 33.333 0.00 0.00 0.00 3.01
1596 1811 8.988934 GTTGCTACATCAATATTTCTCGGATTA 58.011 33.333 0.00 0.00 0.00 1.75
1597 1812 9.725019 TTGCTACATCAATATTTCTCGGATTAT 57.275 29.630 0.00 0.00 0.00 1.28
1598 1813 9.154847 TGCTACATCAATATTTCTCGGATTATG 57.845 33.333 0.00 0.00 0.00 1.90
1599 1814 9.155975 GCTACATCAATATTTCTCGGATTATGT 57.844 33.333 0.00 0.00 0.00 2.29
1601 1816 8.908786 ACATCAATATTTCTCGGATTATGTGT 57.091 30.769 0.00 0.00 0.00 3.72
1602 1817 9.342308 ACATCAATATTTCTCGGATTATGTGTT 57.658 29.630 0.00 0.00 0.00 3.32
1605 1820 9.389755 TCAATATTTCTCGGATTATGTGTTTGA 57.610 29.630 0.00 0.00 0.00 2.69
1608 1823 7.864108 ATTTCTCGGATTATGTGTTTGATCA 57.136 32.000 0.00 0.00 0.00 2.92
1609 1824 7.680442 TTTCTCGGATTATGTGTTTGATCAA 57.320 32.000 3.38 3.38 0.00 2.57
1610 1825 7.864108 TTCTCGGATTATGTGTTTGATCAAT 57.136 32.000 9.40 0.00 0.00 2.57
1611 1826 7.250445 TCTCGGATTATGTGTTTGATCAATG 57.750 36.000 9.40 0.00 0.00 2.82
1612 1827 6.823182 TCTCGGATTATGTGTTTGATCAATGT 59.177 34.615 9.40 0.00 0.00 2.71
1613 1828 7.984617 TCTCGGATTATGTGTTTGATCAATGTA 59.015 33.333 9.40 0.00 0.00 2.29
1614 1829 8.141835 TCGGATTATGTGTTTGATCAATGTAG 57.858 34.615 9.40 0.00 0.00 2.74
1615 1830 7.768582 TCGGATTATGTGTTTGATCAATGTAGT 59.231 33.333 9.40 0.00 0.00 2.73
1616 1831 8.064222 CGGATTATGTGTTTGATCAATGTAGTC 58.936 37.037 9.40 4.95 0.00 2.59
1617 1832 8.064222 GGATTATGTGTTTGATCAATGTAGTCG 58.936 37.037 9.40 0.00 0.00 4.18
1618 1833 5.801350 ATGTGTTTGATCAATGTAGTCGG 57.199 39.130 9.40 0.00 0.00 4.79
1619 1834 3.435327 TGTGTTTGATCAATGTAGTCGGC 59.565 43.478 9.40 0.00 0.00 5.54
1620 1835 3.435327 GTGTTTGATCAATGTAGTCGGCA 59.565 43.478 9.40 0.00 0.00 5.69
1621 1836 3.435327 TGTTTGATCAATGTAGTCGGCAC 59.565 43.478 9.40 0.86 0.00 5.01
1622 1837 3.610040 TTGATCAATGTAGTCGGCACT 57.390 42.857 3.38 0.00 36.55 4.40
1623 1838 4.729227 TTGATCAATGTAGTCGGCACTA 57.271 40.909 3.38 0.00 33.62 2.74
1624 1839 4.729227 TGATCAATGTAGTCGGCACTAA 57.271 40.909 0.00 0.00 36.84 2.24
1625 1840 4.430007 TGATCAATGTAGTCGGCACTAAC 58.570 43.478 0.00 0.00 36.84 2.34
1626 1841 3.945981 TCAATGTAGTCGGCACTAACA 57.054 42.857 0.00 0.00 36.84 2.41
1627 1842 4.465632 TCAATGTAGTCGGCACTAACAT 57.534 40.909 0.00 0.00 36.84 2.71
1628 1843 4.180817 TCAATGTAGTCGGCACTAACATG 58.819 43.478 0.00 0.00 36.84 3.21
1629 1844 3.887621 ATGTAGTCGGCACTAACATGT 57.112 42.857 0.00 0.00 36.84 3.21
1630 1845 4.994907 ATGTAGTCGGCACTAACATGTA 57.005 40.909 0.00 0.00 36.84 2.29
1631 1846 4.994907 TGTAGTCGGCACTAACATGTAT 57.005 40.909 0.00 0.00 36.84 2.29
1632 1847 4.928601 TGTAGTCGGCACTAACATGTATC 58.071 43.478 0.00 0.00 36.84 2.24
1633 1848 4.399934 TGTAGTCGGCACTAACATGTATCA 59.600 41.667 0.00 0.00 36.84 2.15
1634 1849 4.672587 AGTCGGCACTAACATGTATCAT 57.327 40.909 0.00 0.00 0.00 2.45
1635 1850 4.371786 AGTCGGCACTAACATGTATCATG 58.628 43.478 0.00 7.99 0.00 3.07
1636 1851 3.059597 GTCGGCACTAACATGTATCATGC 60.060 47.826 0.00 7.25 0.00 4.06
1637 1852 3.133691 CGGCACTAACATGTATCATGCT 58.866 45.455 18.25 0.95 0.00 3.79
1638 1853 3.561310 CGGCACTAACATGTATCATGCTT 59.439 43.478 18.25 6.32 0.00 3.91
1639 1854 4.553351 CGGCACTAACATGTATCATGCTTG 60.553 45.833 18.25 10.97 0.00 4.01
1640 1855 4.336433 GGCACTAACATGTATCATGCTTGT 59.664 41.667 18.25 2.82 0.00 3.16
1641 1856 5.268544 GCACTAACATGTATCATGCTTGTG 58.731 41.667 16.71 16.71 0.00 3.33
1642 1857 5.163723 GCACTAACATGTATCATGCTTGTGT 60.164 40.000 19.60 10.91 0.00 3.72
1643 1858 6.253013 CACTAACATGTATCATGCTTGTGTG 58.747 40.000 0.00 13.06 0.00 3.82
1644 1859 5.939883 ACTAACATGTATCATGCTTGTGTGT 59.060 36.000 0.00 0.00 0.00 3.72
1645 1860 7.064490 CACTAACATGTATCATGCTTGTGTGTA 59.936 37.037 0.00 0.00 0.00 2.90
1646 1861 6.426980 AACATGTATCATGCTTGTGTGTAG 57.573 37.500 0.00 0.00 0.00 2.74
1647 1862 5.491070 ACATGTATCATGCTTGTGTGTAGT 58.509 37.500 0.00 0.00 0.00 2.73
1648 1863 5.939883 ACATGTATCATGCTTGTGTGTAGTT 59.060 36.000 0.00 0.00 0.00 2.24
1649 1864 6.092670 ACATGTATCATGCTTGTGTGTAGTTC 59.907 38.462 0.00 0.00 0.00 3.01
1650 1865 5.546526 TGTATCATGCTTGTGTGTAGTTCA 58.453 37.500 0.00 0.00 0.00 3.18
1651 1866 5.408299 TGTATCATGCTTGTGTGTAGTTCAC 59.592 40.000 0.00 0.00 46.31 3.18
1652 1867 4.071961 TCATGCTTGTGTGTAGTTCACT 57.928 40.909 1.38 0.00 46.27 3.41
1653 1868 4.450976 TCATGCTTGTGTGTAGTTCACTT 58.549 39.130 1.38 0.00 46.27 3.16
1654 1869 4.881273 TCATGCTTGTGTGTAGTTCACTTT 59.119 37.500 1.38 0.00 46.27 2.66
1655 1870 5.356751 TCATGCTTGTGTGTAGTTCACTTTT 59.643 36.000 1.38 0.00 46.27 2.27
1656 1871 4.980590 TGCTTGTGTGTAGTTCACTTTTG 58.019 39.130 1.38 0.00 46.27 2.44
1657 1872 4.142491 TGCTTGTGTGTAGTTCACTTTTGG 60.142 41.667 1.38 0.00 46.27 3.28
1658 1873 4.142469 GCTTGTGTGTAGTTCACTTTTGGT 60.142 41.667 1.38 0.00 46.27 3.67
1659 1874 5.065474 GCTTGTGTGTAGTTCACTTTTGGTA 59.935 40.000 1.38 0.00 46.27 3.25
1660 1875 6.425577 TTGTGTGTAGTTCACTTTTGGTAC 57.574 37.500 1.38 0.00 46.27 3.34
1661 1876 4.877251 TGTGTGTAGTTCACTTTTGGTACC 59.123 41.667 4.43 4.43 46.27 3.34
1662 1877 4.877251 GTGTGTAGTTCACTTTTGGTACCA 59.123 41.667 11.60 11.60 46.27 3.25
1663 1878 5.007332 GTGTGTAGTTCACTTTTGGTACCAG 59.993 44.000 15.65 6.38 46.27 4.00
1664 1879 5.121105 GTGTAGTTCACTTTTGGTACCAGT 58.879 41.667 15.65 7.10 43.13 4.00
1665 1880 6.127111 TGTGTAGTTCACTTTTGGTACCAGTA 60.127 38.462 15.65 4.62 46.27 2.74
1666 1881 6.201615 GTGTAGTTCACTTTTGGTACCAGTAC 59.798 42.308 15.65 7.18 43.13 2.73
1667 1882 5.362105 AGTTCACTTTTGGTACCAGTACA 57.638 39.130 15.65 0.00 37.78 2.90
1668 1883 5.365619 AGTTCACTTTTGGTACCAGTACAG 58.634 41.667 15.65 11.70 37.78 2.74
1669 1884 5.129815 AGTTCACTTTTGGTACCAGTACAGA 59.870 40.000 15.65 9.28 37.78 3.41
1670 1885 5.617528 TCACTTTTGGTACCAGTACAGAA 57.382 39.130 15.65 2.20 37.78 3.02
1671 1886 5.607477 TCACTTTTGGTACCAGTACAGAAG 58.393 41.667 15.65 14.41 37.78 2.85
1672 1887 4.213482 CACTTTTGGTACCAGTACAGAAGC 59.787 45.833 15.65 0.00 37.78 3.86
1673 1888 4.102681 ACTTTTGGTACCAGTACAGAAGCT 59.897 41.667 15.65 3.24 37.78 3.74
1674 1889 3.678056 TTGGTACCAGTACAGAAGCTG 57.322 47.619 15.65 0.00 37.78 4.24
1675 1890 1.275291 TGGTACCAGTACAGAAGCTGC 59.725 52.381 11.60 0.00 37.78 5.25
1676 1891 1.275291 GGTACCAGTACAGAAGCTGCA 59.725 52.381 7.15 0.00 37.78 4.41
1677 1892 2.338500 GTACCAGTACAGAAGCTGCAC 58.662 52.381 1.02 0.00 34.37 4.57
1678 1893 0.758734 ACCAGTACAGAAGCTGCACA 59.241 50.000 1.02 0.00 34.37 4.57
1679 1894 1.349026 ACCAGTACAGAAGCTGCACAT 59.651 47.619 1.02 0.00 34.37 3.21
1680 1895 2.567169 ACCAGTACAGAAGCTGCACATA 59.433 45.455 1.02 0.00 34.37 2.29
1681 1896 3.007940 ACCAGTACAGAAGCTGCACATAA 59.992 43.478 1.02 0.00 34.37 1.90
1682 1897 4.002982 CCAGTACAGAAGCTGCACATAAA 58.997 43.478 1.02 0.00 34.37 1.40
1683 1898 4.455533 CCAGTACAGAAGCTGCACATAAAA 59.544 41.667 1.02 0.00 34.37 1.52
1684 1899 5.391310 CCAGTACAGAAGCTGCACATAAAAG 60.391 44.000 1.02 0.00 34.37 2.27
1685 1900 4.697352 AGTACAGAAGCTGCACATAAAAGG 59.303 41.667 1.02 0.00 34.37 3.11
1686 1901 2.229784 ACAGAAGCTGCACATAAAAGGC 59.770 45.455 1.02 0.00 34.37 4.35
1687 1902 2.229543 CAGAAGCTGCACATAAAAGGCA 59.770 45.455 1.02 0.00 35.96 4.75
1688 1903 2.229784 AGAAGCTGCACATAAAAGGCAC 59.770 45.455 1.02 0.00 33.34 5.01
1689 1904 1.619654 AGCTGCACATAAAAGGCACA 58.380 45.000 1.02 0.00 33.34 4.57
1690 1905 1.542915 AGCTGCACATAAAAGGCACAG 59.457 47.619 1.02 0.00 33.34 3.66
1691 1906 1.986698 CTGCACATAAAAGGCACAGC 58.013 50.000 0.00 0.00 33.34 4.40
1705 1920 1.774639 CACAGCCAAATGTGTCTTGC 58.225 50.000 0.00 0.00 44.49 4.01
1706 1921 1.338973 CACAGCCAAATGTGTCTTGCT 59.661 47.619 0.00 0.00 44.49 3.91
1707 1922 1.610522 ACAGCCAAATGTGTCTTGCTC 59.389 47.619 0.00 0.00 30.46 4.26
1708 1923 1.610038 CAGCCAAATGTGTCTTGCTCA 59.390 47.619 0.00 0.00 0.00 4.26
1709 1924 2.230508 CAGCCAAATGTGTCTTGCTCAT 59.769 45.455 0.00 0.00 33.22 2.90
1710 1925 2.895404 AGCCAAATGTGTCTTGCTCATT 59.105 40.909 0.00 0.00 41.42 2.57
1711 1926 3.322828 AGCCAAATGTGTCTTGCTCATTT 59.677 39.130 0.00 0.00 46.17 2.32
1712 1927 4.060205 GCCAAATGTGTCTTGCTCATTTT 58.940 39.130 0.00 0.00 44.20 1.82
1713 1928 5.010922 AGCCAAATGTGTCTTGCTCATTTTA 59.989 36.000 0.00 0.00 44.20 1.52
1714 1929 5.346822 GCCAAATGTGTCTTGCTCATTTTAG 59.653 40.000 0.00 0.00 44.20 1.85
1715 1930 5.346822 CCAAATGTGTCTTGCTCATTTTAGC 59.653 40.000 0.00 0.00 44.20 3.09
1716 1931 3.811722 TGTGTCTTGCTCATTTTAGCG 57.188 42.857 0.00 0.00 45.85 4.26
1717 1932 3.138304 TGTGTCTTGCTCATTTTAGCGT 58.862 40.909 0.00 0.00 45.85 5.07
1718 1933 3.186409 TGTGTCTTGCTCATTTTAGCGTC 59.814 43.478 0.00 0.00 45.85 5.19
1719 1934 3.433615 GTGTCTTGCTCATTTTAGCGTCT 59.566 43.478 0.00 0.00 45.85 4.18
1720 1935 3.679980 TGTCTTGCTCATTTTAGCGTCTC 59.320 43.478 0.00 0.00 45.85 3.36
1721 1936 3.062774 GTCTTGCTCATTTTAGCGTCTCC 59.937 47.826 0.00 0.00 45.85 3.71
1722 1937 2.760634 TGCTCATTTTAGCGTCTCCA 57.239 45.000 0.00 0.00 45.85 3.86
1723 1938 3.052455 TGCTCATTTTAGCGTCTCCAA 57.948 42.857 0.00 0.00 45.85 3.53
1724 1939 3.002791 TGCTCATTTTAGCGTCTCCAAG 58.997 45.455 0.00 0.00 45.85 3.61
1725 1940 2.223135 GCTCATTTTAGCGTCTCCAAGC 60.223 50.000 0.00 0.00 31.76 4.01
1726 1941 3.265791 CTCATTTTAGCGTCTCCAAGCT 58.734 45.455 0.00 0.00 46.53 3.74
1727 1942 3.002791 TCATTTTAGCGTCTCCAAGCTG 58.997 45.455 0.00 0.00 44.32 4.24
1728 1943 2.831685 TTTTAGCGTCTCCAAGCTGA 57.168 45.000 0.00 0.00 44.32 4.26
1729 1944 2.831685 TTTAGCGTCTCCAAGCTGAA 57.168 45.000 0.00 0.00 44.32 3.02
1730 1945 3.334583 TTTAGCGTCTCCAAGCTGAAT 57.665 42.857 0.00 0.00 44.32 2.57
1731 1946 4.465632 TTTAGCGTCTCCAAGCTGAATA 57.534 40.909 0.00 0.00 44.32 1.75
1732 1947 2.593346 AGCGTCTCCAAGCTGAATAG 57.407 50.000 0.00 0.00 42.82 1.73
1733 1948 1.827969 AGCGTCTCCAAGCTGAATAGT 59.172 47.619 0.00 0.00 42.82 2.12
1900 2115 3.367292 CGCCCAAAGTGCATTCATTAAGT 60.367 43.478 0.00 0.00 0.00 2.24
1901 2116 3.928375 GCCCAAAGTGCATTCATTAAGTG 59.072 43.478 0.00 0.00 0.00 3.16
1902 2117 4.321899 GCCCAAAGTGCATTCATTAAGTGA 60.322 41.667 0.00 0.00 34.25 3.41
1903 2118 5.163513 CCCAAAGTGCATTCATTAAGTGAC 58.836 41.667 0.00 0.00 36.32 3.67
1904 2119 4.853196 CCAAAGTGCATTCATTAAGTGACG 59.147 41.667 0.00 0.00 36.32 4.35
1905 2120 3.747099 AGTGCATTCATTAAGTGACGC 57.253 42.857 0.00 0.00 36.32 5.19
1906 2121 3.073678 AGTGCATTCATTAAGTGACGCA 58.926 40.909 0.00 0.00 41.03 5.24
1907 2122 3.125829 AGTGCATTCATTAAGTGACGCAG 59.874 43.478 0.00 0.00 42.81 5.18
1908 2123 2.159531 TGCATTCATTAAGTGACGCAGC 60.160 45.455 0.00 0.00 39.39 5.25
1909 2124 2.159531 GCATTCATTAAGTGACGCAGCA 60.160 45.455 0.00 0.00 36.32 4.41
1910 2125 3.488047 GCATTCATTAAGTGACGCAGCAT 60.488 43.478 0.00 0.00 36.32 3.79
1911 2126 4.277258 CATTCATTAAGTGACGCAGCATC 58.723 43.478 0.00 0.00 36.32 3.91
1912 2127 2.279741 TCATTAAGTGACGCAGCATCC 58.720 47.619 0.00 0.00 0.00 3.51
1913 2128 2.009051 CATTAAGTGACGCAGCATCCA 58.991 47.619 0.00 0.00 0.00 3.41
1914 2129 2.401583 TTAAGTGACGCAGCATCCAT 57.598 45.000 0.00 0.00 0.00 3.41
1915 2130 1.655484 TAAGTGACGCAGCATCCATG 58.345 50.000 0.00 0.00 0.00 3.66
1916 2131 0.036105 AAGTGACGCAGCATCCATGA 60.036 50.000 0.00 0.00 0.00 3.07
1917 2132 0.742281 AGTGACGCAGCATCCATGAC 60.742 55.000 0.00 0.00 0.00 3.06
1918 2133 1.020861 GTGACGCAGCATCCATGACA 61.021 55.000 0.00 0.00 0.00 3.58
1919 2134 0.321475 TGACGCAGCATCCATGACAA 60.321 50.000 0.00 0.00 0.00 3.18
1920 2135 0.097674 GACGCAGCATCCATGACAAC 59.902 55.000 0.00 0.00 0.00 3.32
1921 2136 0.321919 ACGCAGCATCCATGACAACT 60.322 50.000 0.00 0.00 0.00 3.16
1922 2137 0.806868 CGCAGCATCCATGACAACTT 59.193 50.000 0.00 0.00 0.00 2.66
1923 2138 1.200716 CGCAGCATCCATGACAACTTT 59.799 47.619 0.00 0.00 0.00 2.66
1924 2139 2.352030 CGCAGCATCCATGACAACTTTT 60.352 45.455 0.00 0.00 0.00 2.27
1925 2140 3.119884 CGCAGCATCCATGACAACTTTTA 60.120 43.478 0.00 0.00 0.00 1.52
1926 2141 4.615682 CGCAGCATCCATGACAACTTTTAA 60.616 41.667 0.00 0.00 0.00 1.52
1927 2142 4.860907 GCAGCATCCATGACAACTTTTAAG 59.139 41.667 0.00 0.00 0.00 1.85
1928 2143 5.565439 GCAGCATCCATGACAACTTTTAAGT 60.565 40.000 0.00 0.00 42.04 2.24
1939 2154 3.813529 ACTTTTAAGTGACGCAGCATC 57.186 42.857 0.00 0.00 37.98 3.91
1951 2166 1.200716 CGCAGCATCCATGACAACTTT 59.799 47.619 0.00 0.00 0.00 2.66
1957 2172 6.489675 CAGCATCCATGACAACTTTATGTAC 58.510 40.000 0.00 0.00 32.57 2.90
1961 2176 6.715344 TCCATGACAACTTTATGTACGTTC 57.285 37.500 0.00 0.00 32.57 3.95
1972 2187 1.780806 TGTACGTTCGGAATTTCGCA 58.219 45.000 0.00 0.00 0.00 5.10
1999 2214 3.181491 GGCTACACAAGTGCAAAACTTCA 60.181 43.478 0.00 0.00 46.60 3.02
2002 2217 2.230992 ACACAAGTGCAAAACTTCAGCA 59.769 40.909 0.00 0.00 46.60 4.41
2063 2278 4.081862 CGGTTAAGTGGAGTTACATCCTGA 60.082 45.833 0.00 0.00 40.29 3.86
2076 2291 1.630369 CATCCTGAACCTCCTCCAACA 59.370 52.381 0.00 0.00 0.00 3.33
2124 2339 3.369787 GCTTGGATTGCTGCCCTTTTAAT 60.370 43.478 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 4.937620 ACATGGAGTCACATTACACATGAC 59.062 41.667 0.00 0.00 42.54 3.06
150 151 5.598417 ACTAAGATTTTGCTGTCCCTTGTTT 59.402 36.000 0.00 0.00 0.00 2.83
209 210 5.879223 CAGAACACCTTTCATCAGCTAGATT 59.121 40.000 0.00 0.00 33.72 2.40
629 641 3.323243 ACTTTTGACGACTAATGGACGG 58.677 45.455 0.00 0.00 0.00 4.79
670 682 2.088423 TGCCACGGCGAAATATTTCTT 58.912 42.857 22.52 5.02 45.51 2.52
685 697 0.238289 CATCAACTCGGTTGTGCCAC 59.762 55.000 13.95 0.00 43.23 5.01
694 741 4.371855 TCTAGTGTAAGCATCAACTCGG 57.628 45.455 0.00 0.00 0.00 4.63
701 749 7.661968 TCAACCAGATATCTAGTGTAAGCATC 58.338 38.462 4.54 0.00 0.00 3.91
746 794 4.096382 CACTCCACCGCTAAAGCAATAAAT 59.904 41.667 2.44 0.00 42.21 1.40
897 946 8.103305 ACAGTGAGTATCCAAATAACTTCACAT 58.897 33.333 0.00 0.00 0.00 3.21
921 970 4.202090 TGCACACAGATAAATGCAAACACA 60.202 37.500 0.00 0.00 44.72 3.72
940 989 3.192541 ACAAAATTGGGTTTCCTGCAC 57.807 42.857 0.00 0.00 0.00 4.57
995 1044 4.400567 CCTTGTCTCCCATTTCCATTTCTC 59.599 45.833 0.00 0.00 0.00 2.87
1020 1069 1.227853 GGTCAACACAAGGCCGACT 60.228 57.895 0.00 0.00 0.00 4.18
1144 1359 6.187125 AGAGAAACAAAATCACCATCGATG 57.813 37.500 18.76 18.76 0.00 3.84
1174 1389 1.448985 TCGTCAACAAATGGCTAGGC 58.551 50.000 9.85 9.85 0.00 3.93
1221 1436 2.246719 AGATGGCGTATTCTTGAGGC 57.753 50.000 0.00 0.00 0.00 4.70
1345 1560 2.764128 GGATCGGCAGGGGAGTCA 60.764 66.667 0.00 0.00 0.00 3.41
1354 1569 1.281867 AGAAATTCCACTGGATCGGCA 59.718 47.619 0.00 0.00 0.00 5.69
1427 1642 2.821969 AGATCACAAGCGAAGGCAATTT 59.178 40.909 0.00 0.00 43.41 1.82
1429 1644 2.119801 AGATCACAAGCGAAGGCAAT 57.880 45.000 0.00 0.00 43.41 3.56
1431 1646 2.621338 CTTAGATCACAAGCGAAGGCA 58.379 47.619 0.00 0.00 43.41 4.75
1438 1653 3.308323 CGAGAAAGCCTTAGATCACAAGC 59.692 47.826 0.00 0.00 0.00 4.01
1470 1685 9.812347 AATGCCCATTAGATCTAATTTATGACA 57.188 29.630 22.76 15.50 33.79 3.58
1473 1688 9.362539 GCAAATGCCCATTAGATCTAATTTATG 57.637 33.333 22.76 14.28 32.59 1.90
1474 1689 9.092338 TGCAAATGCCCATTAGATCTAATTTAT 57.908 29.630 22.76 12.76 41.18 1.40
1475 1690 8.476064 TGCAAATGCCCATTAGATCTAATTTA 57.524 30.769 22.76 11.30 41.18 1.40
1476 1691 7.364149 TGCAAATGCCCATTAGATCTAATTT 57.636 32.000 22.76 12.90 41.18 1.82
1477 1692 6.982160 TGCAAATGCCCATTAGATCTAATT 57.018 33.333 22.76 7.84 41.18 1.40
1478 1693 6.495872 ACATGCAAATGCCCATTAGATCTAAT 59.504 34.615 20.20 20.20 41.18 1.73
1479 1694 5.834742 ACATGCAAATGCCCATTAGATCTAA 59.165 36.000 17.32 17.32 41.18 2.10
1480 1695 5.387788 ACATGCAAATGCCCATTAGATCTA 58.612 37.500 0.00 0.00 41.18 1.98
1481 1696 4.220724 ACATGCAAATGCCCATTAGATCT 58.779 39.130 0.00 0.00 41.18 2.75
1482 1697 4.595762 ACATGCAAATGCCCATTAGATC 57.404 40.909 2.46 0.00 41.18 2.75
1483 1698 4.652421 AGAACATGCAAATGCCCATTAGAT 59.348 37.500 2.46 0.00 41.18 1.98
1484 1699 4.025360 AGAACATGCAAATGCCCATTAGA 58.975 39.130 2.46 0.00 41.18 2.10
1485 1700 4.395959 AGAACATGCAAATGCCCATTAG 57.604 40.909 2.46 0.00 41.18 1.73
1486 1701 4.505808 CAAGAACATGCAAATGCCCATTA 58.494 39.130 2.46 0.00 41.18 1.90
1487 1702 3.340034 CAAGAACATGCAAATGCCCATT 58.660 40.909 2.46 0.00 41.18 3.16
1488 1703 2.355310 CCAAGAACATGCAAATGCCCAT 60.355 45.455 2.46 0.00 41.18 4.00
1489 1704 1.002201 CCAAGAACATGCAAATGCCCA 59.998 47.619 2.46 0.00 41.18 5.36
1490 1705 1.002315 ACCAAGAACATGCAAATGCCC 59.998 47.619 2.46 0.00 41.18 5.36
1491 1706 2.460757 ACCAAGAACATGCAAATGCC 57.539 45.000 2.46 0.00 41.18 4.40
1492 1707 4.178545 ACTACCAAGAACATGCAAATGC 57.821 40.909 0.00 0.00 42.50 3.56
1493 1708 7.326789 CAGTAAACTACCAAGAACATGCAAATG 59.673 37.037 0.00 0.00 0.00 2.32
1494 1709 7.230510 TCAGTAAACTACCAAGAACATGCAAAT 59.769 33.333 0.00 0.00 0.00 2.32
1495 1710 6.544197 TCAGTAAACTACCAAGAACATGCAAA 59.456 34.615 0.00 0.00 0.00 3.68
1496 1711 6.058833 TCAGTAAACTACCAAGAACATGCAA 58.941 36.000 0.00 0.00 0.00 4.08
1497 1712 5.616270 TCAGTAAACTACCAAGAACATGCA 58.384 37.500 0.00 0.00 0.00 3.96
1498 1713 6.403636 CCATCAGTAAACTACCAAGAACATGC 60.404 42.308 0.00 0.00 0.00 4.06
1499 1714 6.403636 GCCATCAGTAAACTACCAAGAACATG 60.404 42.308 0.00 0.00 0.00 3.21
1500 1715 5.648092 GCCATCAGTAAACTACCAAGAACAT 59.352 40.000 0.00 0.00 0.00 2.71
1501 1716 5.001232 GCCATCAGTAAACTACCAAGAACA 58.999 41.667 0.00 0.00 0.00 3.18
1502 1717 5.001232 TGCCATCAGTAAACTACCAAGAAC 58.999 41.667 0.00 0.00 0.00 3.01
1503 1718 5.235850 TGCCATCAGTAAACTACCAAGAA 57.764 39.130 0.00 0.00 0.00 2.52
1504 1719 4.901197 TGCCATCAGTAAACTACCAAGA 57.099 40.909 0.00 0.00 0.00 3.02
1505 1720 4.396166 CCTTGCCATCAGTAAACTACCAAG 59.604 45.833 0.00 0.00 0.00 3.61
1506 1721 4.202524 ACCTTGCCATCAGTAAACTACCAA 60.203 41.667 0.00 0.00 0.00 3.67
1507 1722 3.329520 ACCTTGCCATCAGTAAACTACCA 59.670 43.478 0.00 0.00 0.00 3.25
1508 1723 3.689649 CACCTTGCCATCAGTAAACTACC 59.310 47.826 0.00 0.00 0.00 3.18
1509 1724 3.127030 GCACCTTGCCATCAGTAAACTAC 59.873 47.826 0.00 0.00 37.42 2.73
1510 1725 3.244735 TGCACCTTGCCATCAGTAAACTA 60.245 43.478 0.00 0.00 44.23 2.24
1511 1726 2.162681 GCACCTTGCCATCAGTAAACT 58.837 47.619 0.00 0.00 37.42 2.66
1512 1727 1.885887 TGCACCTTGCCATCAGTAAAC 59.114 47.619 0.00 0.00 44.23 2.01
1513 1728 2.284754 TGCACCTTGCCATCAGTAAA 57.715 45.000 0.00 0.00 44.23 2.01
1514 1729 2.093890 CATGCACCTTGCCATCAGTAA 58.906 47.619 0.00 0.00 44.23 2.24
1515 1730 1.281577 TCATGCACCTTGCCATCAGTA 59.718 47.619 0.00 0.00 44.23 2.74
1516 1731 0.038599 TCATGCACCTTGCCATCAGT 59.961 50.000 0.00 0.00 44.23 3.41
1517 1732 0.454600 GTCATGCACCTTGCCATCAG 59.545 55.000 0.00 0.00 44.23 2.90
1518 1733 0.251253 TGTCATGCACCTTGCCATCA 60.251 50.000 0.00 0.00 44.23 3.07
1519 1734 1.108776 ATGTCATGCACCTTGCCATC 58.891 50.000 0.00 0.00 44.23 3.51
1520 1735 1.479323 GAATGTCATGCACCTTGCCAT 59.521 47.619 0.00 0.00 44.23 4.40
1521 1736 0.889994 GAATGTCATGCACCTTGCCA 59.110 50.000 0.00 0.00 44.23 4.92
1522 1737 0.174162 GGAATGTCATGCACCTTGCC 59.826 55.000 0.00 0.00 44.23 4.52
1523 1738 0.889994 TGGAATGTCATGCACCTTGC 59.110 50.000 0.00 0.00 45.29 4.01
1524 1739 2.821378 TCTTGGAATGTCATGCACCTTG 59.179 45.455 0.00 0.00 0.00 3.61
1525 1740 3.159213 TCTTGGAATGTCATGCACCTT 57.841 42.857 0.00 0.00 0.00 3.50
1526 1741 2.885135 TCTTGGAATGTCATGCACCT 57.115 45.000 0.00 0.00 0.00 4.00
1527 1742 3.444742 TCATTCTTGGAATGTCATGCACC 59.555 43.478 16.52 0.00 0.00 5.01
1528 1743 4.707030 TCATTCTTGGAATGTCATGCAC 57.293 40.909 16.52 0.00 0.00 4.57
1529 1744 4.379708 CGTTCATTCTTGGAATGTCATGCA 60.380 41.667 16.52 0.00 0.00 3.96
1530 1745 4.100529 CGTTCATTCTTGGAATGTCATGC 58.899 43.478 16.52 0.00 0.00 4.06
1531 1746 5.300969 ACGTTCATTCTTGGAATGTCATG 57.699 39.130 16.52 12.92 39.62 3.07
1532 1747 5.335897 CCAACGTTCATTCTTGGAATGTCAT 60.336 40.000 16.52 2.26 42.12 3.06
1533 1748 4.023279 CCAACGTTCATTCTTGGAATGTCA 60.023 41.667 16.52 5.79 42.12 3.58
1534 1749 4.023193 ACCAACGTTCATTCTTGGAATGTC 60.023 41.667 16.52 11.49 42.12 3.06
1535 1750 3.888930 ACCAACGTTCATTCTTGGAATGT 59.111 39.130 16.52 0.00 44.17 2.71
1536 1751 4.023279 TGACCAACGTTCATTCTTGGAATG 60.023 41.667 7.17 12.44 38.29 2.67
1537 1752 4.141287 TGACCAACGTTCATTCTTGGAAT 58.859 39.130 7.17 0.00 38.29 3.01
1538 1753 3.546724 TGACCAACGTTCATTCTTGGAA 58.453 40.909 7.17 0.00 38.29 3.53
1539 1754 3.201353 TGACCAACGTTCATTCTTGGA 57.799 42.857 7.17 0.00 38.29 3.53
1540 1755 3.980646 TTGACCAACGTTCATTCTTGG 57.019 42.857 0.00 0.00 40.40 3.61
1541 1756 7.304735 TGATATTTGACCAACGTTCATTCTTG 58.695 34.615 0.00 0.00 0.00 3.02
1542 1757 7.447374 TGATATTTGACCAACGTTCATTCTT 57.553 32.000 0.00 0.00 0.00 2.52
1543 1758 7.174946 ACTTGATATTTGACCAACGTTCATTCT 59.825 33.333 0.00 0.00 0.00 2.40
1544 1759 7.271223 CACTTGATATTTGACCAACGTTCATTC 59.729 37.037 0.00 0.00 0.00 2.67
1545 1760 7.083858 CACTTGATATTTGACCAACGTTCATT 58.916 34.615 0.00 0.00 0.00 2.57
1546 1761 6.206634 ACACTTGATATTTGACCAACGTTCAT 59.793 34.615 0.00 0.00 0.00 2.57
1547 1762 5.529430 ACACTTGATATTTGACCAACGTTCA 59.471 36.000 0.00 0.00 0.00 3.18
1548 1763 5.997385 ACACTTGATATTTGACCAACGTTC 58.003 37.500 0.00 0.00 0.00 3.95
1549 1764 6.205784 CAACACTTGATATTTGACCAACGTT 58.794 36.000 0.00 0.00 0.00 3.99
1550 1765 5.757886 CAACACTTGATATTTGACCAACGT 58.242 37.500 0.00 0.00 0.00 3.99
1551 1766 4.616802 GCAACACTTGATATTTGACCAACG 59.383 41.667 0.00 0.00 0.00 4.10
1552 1767 5.772521 AGCAACACTTGATATTTGACCAAC 58.227 37.500 0.00 0.00 0.00 3.77
1553 1768 6.488344 TGTAGCAACACTTGATATTTGACCAA 59.512 34.615 0.00 0.00 33.68 3.67
1554 1769 6.000840 TGTAGCAACACTTGATATTTGACCA 58.999 36.000 0.00 0.00 33.68 4.02
1555 1770 6.494893 TGTAGCAACACTTGATATTTGACC 57.505 37.500 0.00 0.00 33.68 4.02
1556 1771 7.751732 TGATGTAGCAACACTTGATATTTGAC 58.248 34.615 0.00 0.00 38.78 3.18
1557 1772 7.920160 TGATGTAGCAACACTTGATATTTGA 57.080 32.000 0.00 0.00 38.78 2.69
1563 1778 9.182214 AGAAATATTGATGTAGCAACACTTGAT 57.818 29.630 0.00 0.00 38.78 2.57
1564 1779 8.565896 AGAAATATTGATGTAGCAACACTTGA 57.434 30.769 0.00 0.00 38.78 3.02
1565 1780 7.637519 CGAGAAATATTGATGTAGCAACACTTG 59.362 37.037 0.00 0.00 38.78 3.16
1566 1781 7.201644 CCGAGAAATATTGATGTAGCAACACTT 60.202 37.037 0.00 0.00 38.78 3.16
1567 1782 6.258727 CCGAGAAATATTGATGTAGCAACACT 59.741 38.462 0.00 0.00 38.78 3.55
1568 1783 6.257849 TCCGAGAAATATTGATGTAGCAACAC 59.742 38.462 0.00 0.00 38.78 3.32
1569 1784 6.345298 TCCGAGAAATATTGATGTAGCAACA 58.655 36.000 0.00 0.00 40.69 3.33
1570 1785 6.844696 TCCGAGAAATATTGATGTAGCAAC 57.155 37.500 0.00 0.00 0.00 4.17
1571 1786 9.725019 ATAATCCGAGAAATATTGATGTAGCAA 57.275 29.630 0.00 0.00 0.00 3.91
1572 1787 9.154847 CATAATCCGAGAAATATTGATGTAGCA 57.845 33.333 0.00 0.00 0.00 3.49
1573 1788 9.155975 ACATAATCCGAGAAATATTGATGTAGC 57.844 33.333 0.00 0.00 0.00 3.58
1575 1790 9.996554 ACACATAATCCGAGAAATATTGATGTA 57.003 29.630 0.00 0.00 0.00 2.29
1576 1791 8.908786 ACACATAATCCGAGAAATATTGATGT 57.091 30.769 0.00 0.00 0.00 3.06
1579 1794 9.389755 TCAAACACATAATCCGAGAAATATTGA 57.610 29.630 0.00 0.00 0.00 2.57
1582 1797 9.559732 TGATCAAACACATAATCCGAGAAATAT 57.440 29.630 0.00 0.00 0.00 1.28
1583 1798 8.956533 TGATCAAACACATAATCCGAGAAATA 57.043 30.769 0.00 0.00 0.00 1.40
1584 1799 7.864108 TGATCAAACACATAATCCGAGAAAT 57.136 32.000 0.00 0.00 0.00 2.17
1585 1800 7.680442 TTGATCAAACACATAATCCGAGAAA 57.320 32.000 5.45 0.00 0.00 2.52
1586 1801 7.336679 ACATTGATCAAACACATAATCCGAGAA 59.663 33.333 13.09 0.00 0.00 2.87
1587 1802 6.823182 ACATTGATCAAACACATAATCCGAGA 59.177 34.615 13.09 0.00 0.00 4.04
1588 1803 7.019774 ACATTGATCAAACACATAATCCGAG 57.980 36.000 13.09 0.00 0.00 4.63
1589 1804 7.768582 ACTACATTGATCAAACACATAATCCGA 59.231 33.333 13.09 0.00 0.00 4.55
1590 1805 7.919690 ACTACATTGATCAAACACATAATCCG 58.080 34.615 13.09 0.00 0.00 4.18
1591 1806 8.064222 CGACTACATTGATCAAACACATAATCC 58.936 37.037 13.09 0.00 0.00 3.01
1592 1807 8.064222 CCGACTACATTGATCAAACACATAATC 58.936 37.037 13.09 2.77 0.00 1.75
1593 1808 7.467267 GCCGACTACATTGATCAAACACATAAT 60.467 37.037 13.09 0.00 0.00 1.28
1594 1809 6.183360 GCCGACTACATTGATCAAACACATAA 60.183 38.462 13.09 0.00 0.00 1.90
1595 1810 5.293324 GCCGACTACATTGATCAAACACATA 59.707 40.000 13.09 0.43 0.00 2.29
1596 1811 4.094887 GCCGACTACATTGATCAAACACAT 59.905 41.667 13.09 0.00 0.00 3.21
1597 1812 3.435327 GCCGACTACATTGATCAAACACA 59.565 43.478 13.09 0.00 0.00 3.72
1598 1813 3.435327 TGCCGACTACATTGATCAAACAC 59.565 43.478 13.09 0.97 0.00 3.32
1599 1814 3.435327 GTGCCGACTACATTGATCAAACA 59.565 43.478 13.09 0.00 0.00 2.83
1600 1815 3.684788 AGTGCCGACTACATTGATCAAAC 59.315 43.478 13.09 1.87 0.00 2.93
1601 1816 3.937814 AGTGCCGACTACATTGATCAAA 58.062 40.909 13.09 0.00 0.00 2.69
1602 1817 3.610040 AGTGCCGACTACATTGATCAA 57.390 42.857 11.26 11.26 0.00 2.57
1603 1818 4.081917 TGTTAGTGCCGACTACATTGATCA 60.082 41.667 0.00 0.00 34.23 2.92
1604 1819 4.430007 TGTTAGTGCCGACTACATTGATC 58.570 43.478 0.00 0.00 34.23 2.92
1605 1820 4.465632 TGTTAGTGCCGACTACATTGAT 57.534 40.909 0.00 0.00 34.23 2.57
1606 1821 3.945981 TGTTAGTGCCGACTACATTGA 57.054 42.857 0.00 0.00 34.23 2.57
1607 1822 3.932710 ACATGTTAGTGCCGACTACATTG 59.067 43.478 0.00 0.00 34.23 2.82
1608 1823 4.202245 ACATGTTAGTGCCGACTACATT 57.798 40.909 0.00 0.00 34.23 2.71
1609 1824 3.887621 ACATGTTAGTGCCGACTACAT 57.112 42.857 0.00 0.00 34.23 2.29
1610 1825 4.399934 TGATACATGTTAGTGCCGACTACA 59.600 41.667 2.30 0.00 34.23 2.74
1611 1826 4.928601 TGATACATGTTAGTGCCGACTAC 58.071 43.478 2.30 0.00 34.23 2.73
1612 1827 5.528870 CATGATACATGTTAGTGCCGACTA 58.471 41.667 2.30 0.00 33.21 2.59
1613 1828 4.371786 CATGATACATGTTAGTGCCGACT 58.628 43.478 2.30 0.00 36.07 4.18
1614 1829 3.059597 GCATGATACATGTTAGTGCCGAC 60.060 47.826 2.30 0.00 0.00 4.79
1615 1830 3.130633 GCATGATACATGTTAGTGCCGA 58.869 45.455 2.30 0.00 0.00 5.54
1616 1831 3.133691 AGCATGATACATGTTAGTGCCG 58.866 45.455 2.30 0.00 0.00 5.69
1617 1832 4.336433 ACAAGCATGATACATGTTAGTGCC 59.664 41.667 2.30 0.00 0.00 5.01
1618 1833 5.163723 ACACAAGCATGATACATGTTAGTGC 60.164 40.000 2.30 10.14 0.00 4.40
1619 1834 6.128200 ACACACAAGCATGATACATGTTAGTG 60.128 38.462 2.30 19.49 0.00 2.74
1620 1835 5.939883 ACACACAAGCATGATACATGTTAGT 59.060 36.000 2.30 6.48 0.00 2.24
1621 1836 6.426980 ACACACAAGCATGATACATGTTAG 57.573 37.500 2.30 5.98 0.00 2.34
1622 1837 7.102993 ACTACACACAAGCATGATACATGTTA 58.897 34.615 2.30 0.00 0.00 2.41
1623 1838 5.939883 ACTACACACAAGCATGATACATGTT 59.060 36.000 2.30 4.70 0.00 2.71
1624 1839 5.491070 ACTACACACAAGCATGATACATGT 58.509 37.500 2.69 2.69 0.00 3.21
1625 1840 6.092533 TGAACTACACACAAGCATGATACATG 59.907 38.462 0.00 7.29 0.00 3.21
1626 1841 6.172630 TGAACTACACACAAGCATGATACAT 58.827 36.000 0.00 0.00 0.00 2.29
1627 1842 5.546526 TGAACTACACACAAGCATGATACA 58.453 37.500 0.00 0.00 0.00 2.29
1641 1856 8.111959 TGTACTGGTACCAAAAGTGAACTACAC 61.112 40.741 17.11 4.61 41.00 2.90
1642 1857 5.362105 ACTGGTACCAAAAGTGAACTACA 57.638 39.130 17.11 0.00 0.00 2.74
1643 1858 6.282930 TGTACTGGTACCAAAAGTGAACTAC 58.717 40.000 17.11 5.95 35.26 2.73
1644 1859 6.324512 TCTGTACTGGTACCAAAAGTGAACTA 59.675 38.462 17.11 0.00 35.26 2.24
1645 1860 5.129815 TCTGTACTGGTACCAAAAGTGAACT 59.870 40.000 17.11 0.00 35.26 3.01
1646 1861 5.362263 TCTGTACTGGTACCAAAAGTGAAC 58.638 41.667 17.11 7.31 35.26 3.18
1647 1862 5.617528 TCTGTACTGGTACCAAAAGTGAA 57.382 39.130 17.11 3.01 35.26 3.18
1648 1863 5.607477 CTTCTGTACTGGTACCAAAAGTGA 58.393 41.667 17.11 9.03 35.26 3.41
1649 1864 4.213482 GCTTCTGTACTGGTACCAAAAGTG 59.787 45.833 17.11 6.29 35.26 3.16
1650 1865 4.102681 AGCTTCTGTACTGGTACCAAAAGT 59.897 41.667 17.11 13.04 35.26 2.66
1651 1866 4.452455 CAGCTTCTGTACTGGTACCAAAAG 59.548 45.833 17.11 6.75 35.26 2.27
1652 1867 4.385825 CAGCTTCTGTACTGGTACCAAAA 58.614 43.478 17.11 3.71 35.26 2.44
1653 1868 3.805807 GCAGCTTCTGTACTGGTACCAAA 60.806 47.826 17.11 5.14 35.26 3.28
1654 1869 2.289444 GCAGCTTCTGTACTGGTACCAA 60.289 50.000 17.11 0.00 35.26 3.67
1655 1870 1.275291 GCAGCTTCTGTACTGGTACCA 59.725 52.381 15.39 15.39 35.26 3.25
1656 1871 1.275291 TGCAGCTTCTGTACTGGTACC 59.725 52.381 4.43 4.43 35.26 3.34
1657 1872 2.288825 TGTGCAGCTTCTGTACTGGTAC 60.289 50.000 14.30 4.15 45.03 3.34
1658 1873 1.967779 TGTGCAGCTTCTGTACTGGTA 59.032 47.619 14.30 0.00 45.03 3.25
1659 1874 0.758734 TGTGCAGCTTCTGTACTGGT 59.241 50.000 14.30 0.00 45.03 4.00
1660 1875 2.105006 ATGTGCAGCTTCTGTACTGG 57.895 50.000 14.30 0.00 45.03 4.00
1661 1876 5.391310 CCTTTTATGTGCAGCTTCTGTACTG 60.391 44.000 14.30 0.00 45.03 2.74
1662 1877 4.697352 CCTTTTATGTGCAGCTTCTGTACT 59.303 41.667 14.30 5.03 45.03 2.73
1663 1878 4.672801 GCCTTTTATGTGCAGCTTCTGTAC 60.673 45.833 7.89 7.89 45.02 2.90
1664 1879 3.440173 GCCTTTTATGTGCAGCTTCTGTA 59.560 43.478 0.00 0.00 33.43 2.74
1665 1880 2.229784 GCCTTTTATGTGCAGCTTCTGT 59.770 45.455 0.00 0.00 33.43 3.41
1666 1881 2.229543 TGCCTTTTATGTGCAGCTTCTG 59.770 45.455 0.00 0.00 34.12 3.02
1667 1882 2.229784 GTGCCTTTTATGTGCAGCTTCT 59.770 45.455 0.00 0.00 35.33 2.85
1668 1883 2.030007 TGTGCCTTTTATGTGCAGCTTC 60.030 45.455 0.00 0.00 35.33 3.86
1669 1884 1.962807 TGTGCCTTTTATGTGCAGCTT 59.037 42.857 0.00 0.00 35.33 3.74
1670 1885 1.542915 CTGTGCCTTTTATGTGCAGCT 59.457 47.619 0.00 0.00 35.33 4.24
1671 1886 1.986698 CTGTGCCTTTTATGTGCAGC 58.013 50.000 0.00 0.00 35.33 5.25
1672 1887 1.403249 GGCTGTGCCTTTTATGTGCAG 60.403 52.381 0.73 0.00 46.69 4.41
1673 1888 0.602562 GGCTGTGCCTTTTATGTGCA 59.397 50.000 0.73 0.00 46.69 4.57
1674 1889 3.423848 GGCTGTGCCTTTTATGTGC 57.576 52.632 0.73 0.00 46.69 4.57
1678 1893 8.146124 AAGACACATTTGGCTGTGCCTTTTAT 62.146 38.462 10.09 0.00 44.27 1.40
1679 1894 6.907578 AAGACACATTTGGCTGTGCCTTTTA 61.908 40.000 10.09 0.00 44.27 1.52
1680 1895 6.197330 AAGACACATTTGGCTGTGCCTTTT 62.197 41.667 10.09 0.00 44.27 2.27
1681 1896 4.758236 AAGACACATTTGGCTGTGCCTTT 61.758 43.478 10.09 0.00 44.27 3.11
1684 1899 0.675633 AAGACACATTTGGCTGTGCC 59.324 50.000 5.37 1.01 42.01 5.01
1685 1900 1.774639 CAAGACACATTTGGCTGTGC 58.225 50.000 5.37 0.00 42.01 4.57
1686 1901 1.338973 AGCAAGACACATTTGGCTGTG 59.661 47.619 4.03 4.03 42.01 3.66
1687 1902 1.610522 GAGCAAGACACATTTGGCTGT 59.389 47.619 0.00 0.00 42.01 4.40
1688 1903 1.610038 TGAGCAAGACACATTTGGCTG 59.390 47.619 0.00 0.00 42.01 4.85
1689 1904 1.985473 TGAGCAAGACACATTTGGCT 58.015 45.000 0.00 0.00 46.51 4.75
1690 1905 3.308438 AATGAGCAAGACACATTTGGC 57.692 42.857 0.00 0.00 36.31 4.52
1691 1906 5.346822 GCTAAAATGAGCAAGACACATTTGG 59.653 40.000 0.00 0.00 45.28 3.28
1692 1907 5.060077 CGCTAAAATGAGCAAGACACATTTG 59.940 40.000 0.00 0.00 45.28 2.32
1694 1909 4.216257 ACGCTAAAATGAGCAAGACACATT 59.784 37.500 0.00 0.00 42.99 2.71
1695 1910 3.753272 ACGCTAAAATGAGCAAGACACAT 59.247 39.130 0.00 0.00 42.99 3.21
1696 1911 3.138304 ACGCTAAAATGAGCAAGACACA 58.862 40.909 0.00 0.00 42.99 3.72
1697 1912 3.433615 AGACGCTAAAATGAGCAAGACAC 59.566 43.478 0.00 0.00 42.99 3.67
1698 1913 3.664107 AGACGCTAAAATGAGCAAGACA 58.336 40.909 0.00 0.00 42.99 3.41
1699 1914 3.062774 GGAGACGCTAAAATGAGCAAGAC 59.937 47.826 0.00 0.00 42.99 3.01
1700 1915 3.262420 GGAGACGCTAAAATGAGCAAGA 58.738 45.455 0.00 0.00 42.99 3.02
1701 1916 3.002791 TGGAGACGCTAAAATGAGCAAG 58.997 45.455 0.00 0.00 42.99 4.01
1702 1917 3.052455 TGGAGACGCTAAAATGAGCAA 57.948 42.857 0.00 0.00 42.99 3.91
1703 1918 2.760634 TGGAGACGCTAAAATGAGCA 57.239 45.000 0.00 0.00 42.99 4.26
1704 1919 2.223135 GCTTGGAGACGCTAAAATGAGC 60.223 50.000 0.00 0.00 39.20 4.26
1705 1920 3.063180 CAGCTTGGAGACGCTAAAATGAG 59.937 47.826 0.00 0.00 34.58 2.90
1706 1921 3.002791 CAGCTTGGAGACGCTAAAATGA 58.997 45.455 0.00 0.00 34.58 2.57
1707 1922 3.002791 TCAGCTTGGAGACGCTAAAATG 58.997 45.455 0.00 0.00 34.58 2.32
1708 1923 3.334583 TCAGCTTGGAGACGCTAAAAT 57.665 42.857 0.00 0.00 34.58 1.82
1709 1924 2.831685 TCAGCTTGGAGACGCTAAAA 57.168 45.000 0.00 0.00 34.58 1.52
1710 1925 2.831685 TTCAGCTTGGAGACGCTAAA 57.168 45.000 0.00 0.00 34.58 1.85
1711 1926 3.447586 ACTATTCAGCTTGGAGACGCTAA 59.552 43.478 0.00 0.00 34.58 3.09
1712 1927 3.024547 ACTATTCAGCTTGGAGACGCTA 58.975 45.455 0.00 0.00 34.58 4.26
1713 1928 1.827969 ACTATTCAGCTTGGAGACGCT 59.172 47.619 0.00 0.00 36.83 5.07
1714 1929 2.197577 GACTATTCAGCTTGGAGACGC 58.802 52.381 0.00 0.00 0.00 5.19
1715 1930 3.510388 TGACTATTCAGCTTGGAGACG 57.490 47.619 0.00 0.00 0.00 4.18
1716 1931 5.181748 ACATTGACTATTCAGCTTGGAGAC 58.818 41.667 0.00 0.00 31.71 3.36
1717 1932 5.426689 ACATTGACTATTCAGCTTGGAGA 57.573 39.130 0.00 0.00 31.71 3.71
1718 1933 5.413833 ACAACATTGACTATTCAGCTTGGAG 59.586 40.000 0.00 0.00 31.71 3.86
1719 1934 5.316167 ACAACATTGACTATTCAGCTTGGA 58.684 37.500 0.00 0.00 31.71 3.53
1720 1935 5.392380 GGACAACATTGACTATTCAGCTTGG 60.392 44.000 0.00 0.00 31.71 3.61
1721 1936 5.413833 AGGACAACATTGACTATTCAGCTTG 59.586 40.000 0.00 0.00 31.71 4.01
1722 1937 5.564550 AGGACAACATTGACTATTCAGCTT 58.435 37.500 0.00 0.00 31.71 3.74
1723 1938 5.046014 AGAGGACAACATTGACTATTCAGCT 60.046 40.000 0.00 0.00 31.71 4.24
1724 1939 5.181748 AGAGGACAACATTGACTATTCAGC 58.818 41.667 0.00 0.00 31.71 4.26
1725 1940 6.402983 GCAAGAGGACAACATTGACTATTCAG 60.403 42.308 0.00 0.00 31.71 3.02
1726 1941 5.412594 GCAAGAGGACAACATTGACTATTCA 59.587 40.000 0.00 0.00 0.00 2.57
1727 1942 5.163713 GGCAAGAGGACAACATTGACTATTC 60.164 44.000 0.00 0.00 0.00 1.75
1728 1943 4.702131 GGCAAGAGGACAACATTGACTATT 59.298 41.667 0.00 0.00 0.00 1.73
1729 1944 4.265073 GGCAAGAGGACAACATTGACTAT 58.735 43.478 0.00 0.00 0.00 2.12
1730 1945 3.559171 GGGCAAGAGGACAACATTGACTA 60.559 47.826 0.00 0.00 31.15 2.59
1731 1946 2.508526 GGCAAGAGGACAACATTGACT 58.491 47.619 0.00 0.00 0.00 3.41
1732 1947 1.541588 GGGCAAGAGGACAACATTGAC 59.458 52.381 0.00 0.00 0.00 3.18
1733 1948 1.144708 TGGGCAAGAGGACAACATTGA 59.855 47.619 0.00 0.00 0.00 2.57
1807 2022 1.873591 GGCGATGATTTTAGCGATGGT 59.126 47.619 0.00 0.00 0.00 3.55
1900 2115 0.321475 TTGTCATGGATGCTGCGTCA 60.321 50.000 22.20 9.79 0.00 4.35
1901 2116 0.097674 GTTGTCATGGATGCTGCGTC 59.902 55.000 13.40 13.40 0.00 5.19
1902 2117 0.321919 AGTTGTCATGGATGCTGCGT 60.322 50.000 0.00 0.00 0.00 5.24
1903 2118 0.806868 AAGTTGTCATGGATGCTGCG 59.193 50.000 0.00 0.00 0.00 5.18
1904 2119 3.308438 AAAAGTTGTCATGGATGCTGC 57.692 42.857 0.00 0.00 0.00 5.25
1905 2120 5.860182 CACTTAAAAGTTGTCATGGATGCTG 59.140 40.000 0.00 0.00 37.08 4.41
1906 2121 5.769662 TCACTTAAAAGTTGTCATGGATGCT 59.230 36.000 0.00 0.00 37.08 3.79
1907 2122 5.858581 GTCACTTAAAAGTTGTCATGGATGC 59.141 40.000 0.00 0.00 37.08 3.91
1908 2123 6.079763 CGTCACTTAAAAGTTGTCATGGATG 58.920 40.000 0.00 0.00 37.08 3.51
1909 2124 5.334879 GCGTCACTTAAAAGTTGTCATGGAT 60.335 40.000 0.00 0.00 37.08 3.41
1910 2125 4.024387 GCGTCACTTAAAAGTTGTCATGGA 60.024 41.667 0.00 0.00 37.08 3.41
1911 2126 4.219033 GCGTCACTTAAAAGTTGTCATGG 58.781 43.478 0.00 0.00 37.08 3.66
1912 2127 4.843147 TGCGTCACTTAAAAGTTGTCATG 58.157 39.130 0.00 0.00 37.08 3.07
1913 2128 4.554723 GCTGCGTCACTTAAAAGTTGTCAT 60.555 41.667 0.00 0.00 37.08 3.06
1914 2129 3.242608 GCTGCGTCACTTAAAAGTTGTCA 60.243 43.478 0.00 0.00 37.08 3.58
1915 2130 3.242608 TGCTGCGTCACTTAAAAGTTGTC 60.243 43.478 0.00 0.00 37.08 3.18
1916 2131 2.680841 TGCTGCGTCACTTAAAAGTTGT 59.319 40.909 0.00 0.00 37.08 3.32
1917 2132 3.332761 TGCTGCGTCACTTAAAAGTTG 57.667 42.857 0.00 0.00 37.08 3.16
1918 2133 3.058224 GGATGCTGCGTCACTTAAAAGTT 60.058 43.478 22.20 0.00 37.08 2.66
1919 2134 2.484264 GGATGCTGCGTCACTTAAAAGT 59.516 45.455 22.20 0.00 40.60 2.66
1920 2135 2.483877 TGGATGCTGCGTCACTTAAAAG 59.516 45.455 22.20 0.00 0.00 2.27
1921 2136 2.499197 TGGATGCTGCGTCACTTAAAA 58.501 42.857 22.20 0.00 0.00 1.52
1922 2137 2.177394 TGGATGCTGCGTCACTTAAA 57.823 45.000 22.20 0.00 0.00 1.52
1923 2138 2.009051 CATGGATGCTGCGTCACTTAA 58.991 47.619 22.20 3.96 0.00 1.85
1924 2139 1.206849 TCATGGATGCTGCGTCACTTA 59.793 47.619 22.20 6.94 0.00 2.24
1925 2140 0.036105 TCATGGATGCTGCGTCACTT 60.036 50.000 22.20 8.18 0.00 3.16
1926 2141 0.742281 GTCATGGATGCTGCGTCACT 60.742 55.000 22.20 6.86 0.00 3.41
1927 2142 1.020861 TGTCATGGATGCTGCGTCAC 61.021 55.000 22.20 12.55 0.00 3.67
1928 2143 0.321475 TTGTCATGGATGCTGCGTCA 60.321 50.000 22.20 9.79 0.00 4.35
1939 2154 5.445407 CCGAACGTACATAAAGTTGTCATGG 60.445 44.000 0.00 0.00 0.00 3.66
1951 2166 3.304026 GTGCGAAATTCCGAACGTACATA 59.696 43.478 0.00 0.00 40.01 2.29
1961 2176 3.089784 CCTCCGTGCGAAATTCCG 58.910 61.111 0.00 0.00 0.00 4.30
1972 2187 1.004918 GCACTTGTGTAGCCTCCGT 60.005 57.895 2.61 0.00 0.00 4.69
1999 2214 2.936202 TCAAGCTTGAAAAGGAGTGCT 58.064 42.857 26.61 0.00 46.35 4.40
2002 2217 7.388460 CTTGATATCAAGCTTGAAAAGGAGT 57.612 36.000 31.55 16.39 46.35 3.85
2083 2298 1.394618 CACGAAACTTGGTGGGGAAA 58.605 50.000 0.00 0.00 33.89 3.13
2124 2339 3.806625 TGATGCGAGATGAAGATGTCA 57.193 42.857 0.00 0.00 41.67 3.58
2314 2529 1.215673 TCCGCATAGAGAGAGGTCCTT 59.784 52.381 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.