Multiple sequence alignment - TraesCS4A01G238600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G238600 chr4A 100.000 3394 0 0 1 3394 547981325 547977932 0.000000e+00 6268.0
1 TraesCS4A01G238600 chr4A 93.692 539 32 1 2699 3237 640204712 640204176 0.000000e+00 806.0
2 TraesCS4A01G238600 chr4A 93.040 546 33 3 2694 3237 467345572 467345030 0.000000e+00 793.0
3 TraesCS4A01G238600 chr4A 92.683 123 5 3 3237 3357 214789784 214789904 1.250000e-39 174.0
4 TraesCS4A01G238600 chr4A 90.816 98 9 0 2592 2689 547988789 547988886 7.640000e-27 132.0
5 TraesCS4A01G238600 chr4B 91.249 2114 99 27 530 2593 72903124 72901047 0.000000e+00 2800.0
6 TraesCS4A01G238600 chr4B 82.772 534 88 4 1 531 163806546 163806014 1.100000e-129 473.0
7 TraesCS4A01G238600 chr4B 89.899 99 9 1 2592 2689 72893512 72893414 3.560000e-25 126.0
8 TraesCS4A01G238600 chr4B 96.491 57 2 0 477 533 615148985 615149041 1.000000e-15 95.3
9 TraesCS4A01G238600 chr4D 92.174 1610 79 22 528 2117 49370432 49368850 0.000000e+00 2231.0
10 TraesCS4A01G238600 chr4D 93.456 489 24 3 2111 2593 49367572 49367086 0.000000e+00 719.0
11 TraesCS4A01G238600 chr4D 88.972 535 55 2 1 531 384968723 384968189 0.000000e+00 658.0
12 TraesCS4A01G238600 chr4D 87.296 307 35 3 226 529 369255250 369254945 6.970000e-92 348.0
13 TraesCS4A01G238600 chr4D 92.070 227 7 2 305 530 416072522 416072306 3.290000e-80 309.0
14 TraesCS4A01G238600 chr4D 97.980 99 2 0 2591 2689 49420694 49420792 4.500000e-39 172.0
15 TraesCS4A01G238600 chr4D 96.491 57 2 0 477 533 426848086 426848142 1.000000e-15 95.3
16 TraesCS4A01G238600 chr4D 93.443 61 4 0 474 534 498051054 498051114 1.300000e-14 91.6
17 TraesCS4A01G238600 chr2B 99.064 534 4 1 1 533 395735754 395735221 0.000000e+00 957.0
18 TraesCS4A01G238600 chr1B 96.255 534 19 1 1 533 359904907 359904374 0.000000e+00 874.0
19 TraesCS4A01G238600 chr1B 92.871 533 35 2 1 531 550382304 550382835 0.000000e+00 771.0
20 TraesCS4A01G238600 chr1B 88.889 153 14 3 3236 3387 476971046 476971196 5.780000e-43 185.0
21 TraesCS4A01G238600 chr5A 94.074 540 30 1 2698 3237 411880792 411880255 0.000000e+00 819.0
22 TraesCS4A01G238600 chr5A 92.922 551 32 3 2689 3237 20788343 20787798 0.000000e+00 795.0
23 TraesCS4A01G238600 chr5A 91.541 532 41 3 1 529 552304800 552305330 0.000000e+00 730.0
24 TraesCS4A01G238600 chr5A 93.162 468 28 1 1 464 444046093 444046560 0.000000e+00 684.0
25 TraesCS4A01G238600 chr2D 93.394 545 33 2 2694 3237 647411629 647411087 0.000000e+00 804.0
26 TraesCS4A01G238600 chr2D 82.868 537 85 4 1 532 452604908 452604374 3.060000e-130 475.0
27 TraesCS4A01G238600 chr3B 93.797 532 31 2 1 531 422326348 422325818 0.000000e+00 798.0
28 TraesCS4A01G238600 chr3B 90.772 531 41 4 1 528 440225652 440225127 0.000000e+00 702.0
29 TraesCS4A01G238600 chr3B 80.925 173 27 4 1562 1731 597840721 597840552 7.640000e-27 132.0
30 TraesCS4A01G238600 chr3B 90.141 71 5 2 1389 1458 686524870 686524939 1.300000e-14 91.6
31 TraesCS4A01G238600 chr2A 93.199 544 35 2 2695 3237 59003302 59003844 0.000000e+00 798.0
32 TraesCS4A01G238600 chr2A 93.186 543 33 3 2696 3237 160011853 160012392 0.000000e+00 795.0
33 TraesCS4A01G238600 chr1A 92.989 542 36 1 2696 3237 496302364 496301825 0.000000e+00 789.0
34 TraesCS4A01G238600 chr1A 88.972 535 56 1 1 532 372115254 372115788 0.000000e+00 658.0
35 TraesCS4A01G238600 chr1A 81.166 446 80 4 38 480 276649130 276648686 4.170000e-94 355.0
36 TraesCS4A01G238600 chr7A 92.963 540 36 1 2698 3237 731780907 731780370 0.000000e+00 785.0
37 TraesCS4A01G238600 chr7A 84.082 534 73 11 2 530 109366103 109365577 3.910000e-139 505.0
38 TraesCS4A01G238600 chr7A 92.405 158 12 0 3237 3394 90325135 90325292 3.410000e-55 226.0
39 TraesCS4A01G238600 chr7A 92.810 153 10 1 3236 3387 14234045 14234197 1.590000e-53 220.0
40 TraesCS4A01G238600 chr7A 89.080 174 6 2 3234 3394 332513296 332513123 1.600000e-48 204.0
41 TraesCS4A01G238600 chr5D 88.641 537 53 6 1 532 152780776 152780243 0.000000e+00 647.0
42 TraesCS4A01G238600 chr5D 86.328 256 30 4 275 526 419766689 419766435 1.200000e-69 274.0
43 TraesCS4A01G238600 chr5D 96.491 57 2 0 477 533 519823190 519823134 1.000000e-15 95.3
44 TraesCS4A01G238600 chr3A 89.633 463 45 2 77 536 171214292 171213830 1.360000e-163 586.0
45 TraesCS4A01G238600 chr3A 91.198 409 30 6 133 536 657229364 657229771 4.950000e-153 551.0
46 TraesCS4A01G238600 chr3A 90.683 161 10 2 3238 3394 378830051 378830210 3.430000e-50 209.0
47 TraesCS4A01G238600 chr3A 89.266 177 4 5 3225 3388 557604719 557604893 1.230000e-49 207.0
48 TraesCS4A01G238600 chr3A 81.068 206 34 4 1559 1760 656135299 656135503 3.510000e-35 159.0
49 TraesCS4A01G238600 chr3A 81.250 176 27 4 1559 1731 596357567 596357739 1.640000e-28 137.0
50 TraesCS4A01G238600 chr3A 81.503 173 26 4 1562 1731 597234359 597234190 1.640000e-28 137.0
51 TraesCS4A01G238600 chr3D 83.925 535 69 12 5 531 590085270 590084745 2.350000e-136 496.0
52 TraesCS4A01G238600 chr3D 81.463 205 35 2 1559 1760 520824703 520824907 7.530000e-37 165.0
53 TraesCS4A01G238600 chr3D 81.503 173 26 4 1562 1731 454980986 454980817 1.640000e-28 137.0
54 TraesCS4A01G238600 chr3D 80.682 176 28 4 1559 1731 454219686 454219858 7.640000e-27 132.0
55 TraesCS4A01G238600 chr6D 82.156 538 85 9 1 530 294410929 294411463 5.160000e-123 451.0
56 TraesCS4A01G238600 chr6D 96.552 58 2 0 477 534 16638553 16638496 2.790000e-16 97.1
57 TraesCS4A01G238600 chr6D 96.491 57 2 0 477 533 143675869 143675925 1.000000e-15 95.3
58 TraesCS4A01G238600 chr6D 94.915 59 3 0 474 532 346463114 346463172 3.610000e-15 93.5
59 TraesCS4A01G238600 chr6D 96.429 56 2 0 477 532 450888452 450888507 3.610000e-15 93.5
60 TraesCS4A01G238600 chr6D 96.296 54 2 0 477 530 113910529 113910582 4.660000e-14 89.8
61 TraesCS4A01G238600 chr6D 98.039 51 1 0 482 532 291965633 291965683 4.660000e-14 89.8
62 TraesCS4A01G238600 chr6D 96.296 54 2 0 477 530 436246835 436246782 4.660000e-14 89.8
63 TraesCS4A01G238600 chr6D 94.545 55 3 0 477 531 39585171 39585117 6.030000e-13 86.1
64 TraesCS4A01G238600 chr6B 90.260 154 10 5 3238 3387 115656692 115656844 2.670000e-46 196.0
65 TraesCS4A01G238600 chr1D 83.626 171 14 9 3237 3394 433486141 433486310 7.590000e-32 148.0
66 TraesCS4A01G238600 chr1D 96.296 54 2 0 477 530 468715344 468715291 4.660000e-14 89.8
67 TraesCS4A01G238600 chr1D 96.226 53 2 0 477 529 234735100 234735152 1.680000e-13 87.9
68 TraesCS4A01G238600 chr1D 94.737 57 1 2 479 534 246417650 246417705 1.680000e-13 87.9
69 TraesCS4A01G238600 chr1D 91.525 59 4 1 477 534 229581344 229581286 2.810000e-11 80.5
70 TraesCS4A01G238600 chr1D 92.593 54 3 1 479 531 86511986 86511933 3.630000e-10 76.8
71 TraesCS4A01G238600 chr1D 92.453 53 4 0 479 531 453077115 453077167 3.630000e-10 76.8
72 TraesCS4A01G238600 chr1D 89.474 57 3 2 474 530 204003313 204003366 6.080000e-08 69.4
73 TraesCS4A01G238600 chrUn 96.226 53 2 0 477 529 6061816 6061868 1.680000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G238600 chr4A 547977932 547981325 3393 True 6268 6268 100.000 1 3394 1 chr4A.!!$R2 3393
1 TraesCS4A01G238600 chr4A 640204176 640204712 536 True 806 806 93.692 2699 3237 1 chr4A.!!$R3 538
2 TraesCS4A01G238600 chr4A 467345030 467345572 542 True 793 793 93.040 2694 3237 1 chr4A.!!$R1 543
3 TraesCS4A01G238600 chr4B 72901047 72903124 2077 True 2800 2800 91.249 530 2593 1 chr4B.!!$R2 2063
4 TraesCS4A01G238600 chr4B 163806014 163806546 532 True 473 473 82.772 1 531 1 chr4B.!!$R3 530
5 TraesCS4A01G238600 chr4D 49367086 49370432 3346 True 1475 2231 92.815 528 2593 2 chr4D.!!$R4 2065
6 TraesCS4A01G238600 chr4D 384968189 384968723 534 True 658 658 88.972 1 531 1 chr4D.!!$R2 530
7 TraesCS4A01G238600 chr2B 395735221 395735754 533 True 957 957 99.064 1 533 1 chr2B.!!$R1 532
8 TraesCS4A01G238600 chr1B 359904374 359904907 533 True 874 874 96.255 1 533 1 chr1B.!!$R1 532
9 TraesCS4A01G238600 chr1B 550382304 550382835 531 False 771 771 92.871 1 531 1 chr1B.!!$F2 530
10 TraesCS4A01G238600 chr5A 411880255 411880792 537 True 819 819 94.074 2698 3237 1 chr5A.!!$R2 539
11 TraesCS4A01G238600 chr5A 20787798 20788343 545 True 795 795 92.922 2689 3237 1 chr5A.!!$R1 548
12 TraesCS4A01G238600 chr5A 552304800 552305330 530 False 730 730 91.541 1 529 1 chr5A.!!$F2 528
13 TraesCS4A01G238600 chr2D 647411087 647411629 542 True 804 804 93.394 2694 3237 1 chr2D.!!$R2 543
14 TraesCS4A01G238600 chr2D 452604374 452604908 534 True 475 475 82.868 1 532 1 chr2D.!!$R1 531
15 TraesCS4A01G238600 chr3B 422325818 422326348 530 True 798 798 93.797 1 531 1 chr3B.!!$R1 530
16 TraesCS4A01G238600 chr3B 440225127 440225652 525 True 702 702 90.772 1 528 1 chr3B.!!$R2 527
17 TraesCS4A01G238600 chr2A 59003302 59003844 542 False 798 798 93.199 2695 3237 1 chr2A.!!$F1 542
18 TraesCS4A01G238600 chr2A 160011853 160012392 539 False 795 795 93.186 2696 3237 1 chr2A.!!$F2 541
19 TraesCS4A01G238600 chr1A 496301825 496302364 539 True 789 789 92.989 2696 3237 1 chr1A.!!$R2 541
20 TraesCS4A01G238600 chr1A 372115254 372115788 534 False 658 658 88.972 1 532 1 chr1A.!!$F1 531
21 TraesCS4A01G238600 chr7A 731780370 731780907 537 True 785 785 92.963 2698 3237 1 chr7A.!!$R3 539
22 TraesCS4A01G238600 chr7A 109365577 109366103 526 True 505 505 84.082 2 530 1 chr7A.!!$R1 528
23 TraesCS4A01G238600 chr5D 152780243 152780776 533 True 647 647 88.641 1 532 1 chr5D.!!$R1 531
24 TraesCS4A01G238600 chr3D 590084745 590085270 525 True 496 496 83.925 5 531 1 chr3D.!!$R2 526
25 TraesCS4A01G238600 chr6D 294410929 294411463 534 False 451 451 82.156 1 530 1 chr6D.!!$F4 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 814 0.608640 ATTCCGCGGCTTATCCCTAG 59.391 55.0 23.51 0.0 0.00 3.02 F
1799 1851 0.108585 GACCAGGCAAAGGTGAGTGA 59.891 55.0 0.86 0.0 40.09 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1858 1925 0.037139 TCCTGCAACATTTGGCATGC 60.037 50.0 9.9 9.9 39.65 4.06 R
2669 4026 0.175760 TTCGCTTTCATCGCCTAGCT 59.824 50.0 0.0 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
213 214 6.431543 TGAACTTTGACACAGTAAGGTTTTGA 59.568 34.615 0.00 0.00 0.00 2.69
582 591 4.340617 TCACACATACCAATCCTTTTCCC 58.659 43.478 0.00 0.00 0.00 3.97
598 607 5.246883 CCTTTTCCCTCCATGAACAGAAAAT 59.753 40.000 11.50 0.00 33.98 1.82
601 610 7.847711 TTTCCCTCCATGAACAGAAAATAAA 57.152 32.000 0.00 0.00 0.00 1.40
782 814 0.608640 ATTCCGCGGCTTATCCCTAG 59.391 55.000 23.51 0.00 0.00 3.02
783 815 2.048127 CCGCGGCTTATCCCTAGC 60.048 66.667 14.67 0.00 37.91 3.42
784 816 2.574955 CCGCGGCTTATCCCTAGCT 61.575 63.158 14.67 0.00 38.67 3.32
785 817 1.248785 CCGCGGCTTATCCCTAGCTA 61.249 60.000 14.67 0.00 38.67 3.32
828 860 4.767255 CCCGCCACAGCTCACCTC 62.767 72.222 0.00 0.00 36.60 3.85
829 861 4.767255 CCGCCACAGCTCACCTCC 62.767 72.222 0.00 0.00 36.60 4.30
847 879 1.149077 TCCGTCCCATCCCATCATCTA 59.851 52.381 0.00 0.00 0.00 1.98
904 936 1.330655 TGAAGCCTCTCGATCACCCC 61.331 60.000 0.00 0.00 0.00 4.95
906 938 1.045911 AAGCCTCTCGATCACCCCTC 61.046 60.000 0.00 0.00 0.00 4.30
907 939 2.503382 GCCTCTCGATCACCCCTCC 61.503 68.421 0.00 0.00 0.00 4.30
926 963 1.983605 CCAACGTCTATATAAGCCGCG 59.016 52.381 0.00 0.00 0.00 6.46
1103 1146 2.837291 CCTGGCCTCGGAGGAGAG 60.837 72.222 27.95 19.51 43.27 3.20
1153 1196 4.047059 ACTACACGGTGTCGCGGG 62.047 66.667 18.43 6.78 40.63 6.13
1376 1419 2.209064 GACGGCAGCTTCAGGTACGA 62.209 60.000 8.66 0.00 0.00 3.43
1377 1420 1.080093 CGGCAGCTTCAGGTACGAA 60.080 57.895 0.00 0.00 0.00 3.85
1384 1427 0.242825 CTTCAGGTACGAAGACGCCA 59.757 55.000 4.93 0.00 44.32 5.69
1495 1542 2.289547 TGAGTTTCTTTCTTTTCGGCCG 59.710 45.455 22.12 22.12 0.00 6.13
1511 1563 1.067821 GGCCGTTGGATGTGTCAAAAA 59.932 47.619 0.00 0.00 0.00 1.94
1514 1566 3.003897 GCCGTTGGATGTGTCAAAAACTA 59.996 43.478 0.00 0.00 0.00 2.24
1527 1579 8.849168 TGTGTCAAAAACTATGTGATTCATTCT 58.151 29.630 0.00 0.00 37.91 2.40
1542 1594 1.578215 ATTCTGCTGTGGGAGGCCAT 61.578 55.000 5.01 0.00 0.00 4.40
1552 1604 1.707989 TGGGAGGCCATAAACTGTTCA 59.292 47.619 5.01 0.00 0.00 3.18
1553 1605 2.109128 TGGGAGGCCATAAACTGTTCAA 59.891 45.455 5.01 0.00 0.00 2.69
1554 1606 3.161866 GGGAGGCCATAAACTGTTCAAA 58.838 45.455 5.01 0.00 0.00 2.69
1555 1607 3.769300 GGGAGGCCATAAACTGTTCAAAT 59.231 43.478 5.01 0.00 0.00 2.32
1796 1848 2.328099 GCGACCAGGCAAAGGTGAG 61.328 63.158 0.86 0.00 40.09 3.51
1797 1849 1.071471 CGACCAGGCAAAGGTGAGT 59.929 57.895 0.86 0.00 40.09 3.41
1798 1850 1.230635 CGACCAGGCAAAGGTGAGTG 61.231 60.000 0.86 0.00 40.09 3.51
1799 1851 0.108585 GACCAGGCAAAGGTGAGTGA 59.891 55.000 0.86 0.00 40.09 3.41
1914 1981 1.279238 GATCGACGGCTACGAGGAC 59.721 63.158 8.56 0.00 44.60 3.85
1938 2005 4.719369 GCCAACGACGAGTCCGCT 62.719 66.667 0.00 0.00 39.95 5.52
1956 2023 0.802607 CTCTACAGAAAGCCGTCGCC 60.803 60.000 0.00 0.00 34.57 5.54
2044 2111 1.811266 CCGATCCAACTCCGTGCAG 60.811 63.158 0.00 0.00 0.00 4.41
2055 2122 2.224185 ACTCCGTGCAGTTGATACACAA 60.224 45.455 0.00 0.00 33.89 3.33
2056 2123 3.002791 CTCCGTGCAGTTGATACACAAT 58.997 45.455 0.00 0.00 40.76 2.71
2057 2124 3.000041 TCCGTGCAGTTGATACACAATC 59.000 45.455 0.00 0.00 40.76 2.67
2058 2125 2.741517 CCGTGCAGTTGATACACAATCA 59.258 45.455 0.00 0.00 43.03 2.57
2059 2126 3.424829 CCGTGCAGTTGATACACAATCAC 60.425 47.826 0.00 0.00 44.42 3.06
2060 2127 3.186205 CGTGCAGTTGATACACAATCACA 59.814 43.478 0.00 0.00 44.42 3.58
2061 2128 4.319405 CGTGCAGTTGATACACAATCACAA 60.319 41.667 0.00 0.00 44.42 3.33
2062 2129 5.518812 GTGCAGTTGATACACAATCACAAA 58.481 37.500 0.00 0.00 44.42 2.83
2063 2130 6.151691 GTGCAGTTGATACACAATCACAAAT 58.848 36.000 0.00 0.00 44.42 2.32
2064 2131 6.088483 GTGCAGTTGATACACAATCACAAATG 59.912 38.462 0.00 0.00 44.42 2.32
2065 2132 6.621737 CAGTTGATACACAATCACAAATGC 57.378 37.500 0.00 0.00 44.42 3.56
2070 2137 6.239261 TTGATACACAATCACAAATGCCTTGT 60.239 34.615 0.00 0.00 44.42 3.16
2079 2146 5.129634 TCACAAATGCCTTGTTCTTGTCTA 58.870 37.500 0.00 0.00 46.49 2.59
2094 2161 6.530019 TCTTGTCTATGCTATGTTCAGTGA 57.470 37.500 0.00 0.00 0.00 3.41
2258 3609 1.645710 GAGAGGACTGGGGTGAGAAA 58.354 55.000 0.00 0.00 0.00 2.52
2336 3687 2.125673 CAGGCGTCCTACCCAACG 60.126 66.667 0.00 0.00 41.68 4.10
2369 3720 0.539051 ATGCTAGCACAGTCAGGGAC 59.461 55.000 22.07 0.00 0.00 4.46
2381 3732 0.750546 TCAGGGACGGGTCTCATACG 60.751 60.000 0.95 0.00 30.85 3.06
2397 3748 4.911390 TCATACGGATGAGCTCTAGATGA 58.089 43.478 16.19 11.67 37.15 2.92
2404 3755 4.322877 GGATGAGCTCTAGATGACATGCAT 60.323 45.833 16.19 0.00 40.77 3.96
2426 3777 1.217585 ATGCGATCATTCCGAGTGCG 61.218 55.000 0.00 0.00 31.91 5.34
2563 3920 8.883954 TGCAACTAATTTGTCAAATGATTCAA 57.116 26.923 11.54 0.00 37.54 2.69
2589 3946 8.187913 TGAAATTCAAGATTGGGTTGTATTCA 57.812 30.769 0.00 0.00 28.22 2.57
2593 3950 9.699410 AATTCAAGATTGGGTTGTATTCAGATA 57.301 29.630 0.00 0.00 0.00 1.98
2594 3951 9.872684 ATTCAAGATTGGGTTGTATTCAGATAT 57.127 29.630 0.00 0.00 0.00 1.63
2595 3952 9.699410 TTCAAGATTGGGTTGTATTCAGATATT 57.301 29.630 0.00 0.00 0.00 1.28
2596 3953 9.699410 TCAAGATTGGGTTGTATTCAGATATTT 57.301 29.630 0.00 0.00 0.00 1.40
2597 3954 9.956720 CAAGATTGGGTTGTATTCAGATATTTC 57.043 33.333 0.00 0.00 0.00 2.17
2598 3955 8.697507 AGATTGGGTTGTATTCAGATATTTCC 57.302 34.615 0.00 0.00 0.00 3.13
2599 3956 7.725844 AGATTGGGTTGTATTCAGATATTTCCC 59.274 37.037 0.00 0.00 0.00 3.97
2600 3957 6.590656 TGGGTTGTATTCAGATATTTCCCT 57.409 37.500 0.00 0.00 31.17 4.20
2601 3958 6.364701 TGGGTTGTATTCAGATATTTCCCTG 58.635 40.000 0.00 0.00 31.17 4.45
2602 3959 6.159575 TGGGTTGTATTCAGATATTTCCCTGA 59.840 38.462 0.00 0.00 37.61 3.86
2609 3966 5.512942 TCAGATATTTCCCTGAACCAACA 57.487 39.130 0.00 0.00 36.58 3.33
2610 3967 5.253330 TCAGATATTTCCCTGAACCAACAC 58.747 41.667 0.00 0.00 36.58 3.32
2611 3968 4.399303 CAGATATTTCCCTGAACCAACACC 59.601 45.833 0.00 0.00 32.37 4.16
2612 3969 4.292306 AGATATTTCCCTGAACCAACACCT 59.708 41.667 0.00 0.00 0.00 4.00
2613 3970 2.065899 TTTCCCTGAACCAACACCTG 57.934 50.000 0.00 0.00 0.00 4.00
2614 3971 0.467290 TTCCCTGAACCAACACCTGC 60.467 55.000 0.00 0.00 0.00 4.85
2615 3972 1.151450 CCCTGAACCAACACCTGCT 59.849 57.895 0.00 0.00 0.00 4.24
2616 3973 1.174712 CCCTGAACCAACACCTGCTG 61.175 60.000 0.00 0.00 0.00 4.41
2617 3974 1.174712 CCTGAACCAACACCTGCTGG 61.175 60.000 8.29 8.29 37.31 4.85
2621 3978 3.298320 ACCAACACCTGCTGGTTTT 57.702 47.368 13.36 10.56 46.05 2.43
2622 3979 1.111277 ACCAACACCTGCTGGTTTTC 58.889 50.000 13.36 0.00 46.05 2.29
2623 3980 0.389025 CCAACACCTGCTGGTTTTCC 59.611 55.000 13.36 0.00 46.05 3.13
2624 3981 0.389025 CAACACCTGCTGGTTTTCCC 59.611 55.000 13.36 0.00 46.05 3.97
2625 3982 0.759060 AACACCTGCTGGTTTTCCCC 60.759 55.000 13.36 0.00 46.05 4.81
2626 3983 1.153756 CACCTGCTGGTTTTCCCCT 59.846 57.895 13.36 0.00 46.05 4.79
2627 3984 1.153756 ACCTGCTGGTTTTCCCCTG 59.846 57.895 9.88 0.00 46.05 4.45
2628 3985 1.360393 ACCTGCTGGTTTTCCCCTGA 61.360 55.000 9.88 0.00 46.05 3.86
2629 3986 0.178964 CCTGCTGGTTTTCCCCTGAA 60.179 55.000 0.51 0.00 39.73 3.02
2630 3987 1.550869 CCTGCTGGTTTTCCCCTGAAT 60.551 52.381 0.51 0.00 39.73 2.57
2631 3988 2.291540 CCTGCTGGTTTTCCCCTGAATA 60.292 50.000 0.51 0.00 39.73 1.75
2632 3989 3.019564 CTGCTGGTTTTCCCCTGAATAG 58.980 50.000 0.00 0.00 39.73 1.73
2633 3990 2.647299 TGCTGGTTTTCCCCTGAATAGA 59.353 45.455 0.00 0.00 39.73 1.98
2634 3991 3.269381 TGCTGGTTTTCCCCTGAATAGAT 59.731 43.478 0.00 0.00 39.73 1.98
2635 3992 3.885901 GCTGGTTTTCCCCTGAATAGATC 59.114 47.826 0.00 0.00 39.73 2.75
2636 3993 4.130118 CTGGTTTTCCCCTGAATAGATCG 58.870 47.826 0.00 0.00 39.73 3.69
2637 3994 3.778075 TGGTTTTCCCCTGAATAGATCGA 59.222 43.478 0.00 0.00 39.73 3.59
2638 3995 4.412199 TGGTTTTCCCCTGAATAGATCGAT 59.588 41.667 0.00 0.00 39.73 3.59
2639 3996 5.104109 TGGTTTTCCCCTGAATAGATCGATT 60.104 40.000 0.00 0.11 39.73 3.34
2640 3997 5.239525 GGTTTTCCCCTGAATAGATCGATTG 59.760 44.000 5.73 0.00 0.00 2.67
2641 3998 5.887214 TTTCCCCTGAATAGATCGATTGA 57.113 39.130 5.73 0.00 0.00 2.57
2642 3999 5.474578 TTCCCCTGAATAGATCGATTGAG 57.525 43.478 5.73 6.90 0.00 3.02
2643 4000 3.259374 TCCCCTGAATAGATCGATTGAGC 59.741 47.826 5.73 0.00 0.00 4.26
2644 4001 3.007290 CCCCTGAATAGATCGATTGAGCA 59.993 47.826 5.73 0.00 31.29 4.26
2645 4002 4.503817 CCCCTGAATAGATCGATTGAGCAA 60.504 45.833 5.73 0.00 31.29 3.91
2646 4003 4.689812 CCCTGAATAGATCGATTGAGCAAG 59.310 45.833 5.73 0.00 31.29 4.01
2647 4004 4.689812 CCTGAATAGATCGATTGAGCAAGG 59.310 45.833 5.73 0.02 31.29 3.61
2648 4005 5.282055 TGAATAGATCGATTGAGCAAGGT 57.718 39.130 5.73 0.00 31.29 3.50
2649 4006 5.052481 TGAATAGATCGATTGAGCAAGGTG 58.948 41.667 5.73 0.00 31.29 4.00
2650 4007 4.944619 ATAGATCGATTGAGCAAGGTGA 57.055 40.909 0.00 0.00 31.29 4.02
2651 4008 2.898705 AGATCGATTGAGCAAGGTGAC 58.101 47.619 0.00 0.00 31.29 3.67
2652 4009 1.936547 GATCGATTGAGCAAGGTGACC 59.063 52.381 0.00 0.00 0.00 4.02
2653 4010 0.684535 TCGATTGAGCAAGGTGACCA 59.315 50.000 3.63 0.00 0.00 4.02
2654 4011 1.278985 TCGATTGAGCAAGGTGACCAT 59.721 47.619 3.63 0.00 0.00 3.55
2655 4012 1.399440 CGATTGAGCAAGGTGACCATG 59.601 52.381 3.63 2.66 0.00 3.66
2656 4013 2.440409 GATTGAGCAAGGTGACCATGT 58.560 47.619 8.77 0.00 0.00 3.21
2657 4014 1.896220 TTGAGCAAGGTGACCATGTC 58.104 50.000 8.77 5.74 0.00 3.06
2658 4015 0.320683 TGAGCAAGGTGACCATGTCG 60.321 55.000 8.77 0.00 34.95 4.35
2659 4016 1.003355 AGCAAGGTGACCATGTCGG 60.003 57.895 8.77 0.00 42.50 4.79
2660 4017 2.040544 GCAAGGTGACCATGTCGGG 61.041 63.158 8.77 0.00 40.22 5.14
2666 4023 4.530857 GACCATGTCGGGCGAGGG 62.531 72.222 0.00 0.00 40.22 4.30
2679 4036 3.299190 GAGGGCGAGCTAGGCGAT 61.299 66.667 14.06 5.42 37.59 4.58
2680 4037 3.565910 GAGGGCGAGCTAGGCGATG 62.566 68.421 14.06 0.00 37.59 3.84
2681 4038 3.606662 GGGCGAGCTAGGCGATGA 61.607 66.667 14.06 0.00 37.59 2.92
2682 4039 2.417516 GGCGAGCTAGGCGATGAA 59.582 61.111 4.29 0.00 0.00 2.57
2683 4040 1.227263 GGCGAGCTAGGCGATGAAA 60.227 57.895 4.29 0.00 0.00 2.69
2684 4041 1.218230 GGCGAGCTAGGCGATGAAAG 61.218 60.000 4.29 0.00 0.00 2.62
2685 4042 1.826299 GCGAGCTAGGCGATGAAAGC 61.826 60.000 0.00 0.00 35.16 3.51
2772 4129 1.980951 GCGCATCGTCTGATTTGGCA 61.981 55.000 0.30 0.00 30.49 4.92
2812 4169 0.958091 AGCAGCCACGTTAAAATGCA 59.042 45.000 9.71 0.00 36.15 3.96
2813 4170 1.068333 AGCAGCCACGTTAAAATGCAG 60.068 47.619 9.71 0.00 36.15 4.41
2822 4180 1.906994 TTAAAATGCAGAGCGCGCGT 61.907 50.000 32.35 18.26 46.97 6.01
2847 4207 1.154054 CCAGCAGCGCGCAAAAATA 60.154 52.632 35.10 0.00 46.13 1.40
3048 4411 3.306166 GCACAAATCATGATGCTCTTTGC 59.694 43.478 9.46 8.77 43.25 3.68
3147 4510 2.494530 GGAGGCAACAAAACGGGCA 61.495 57.895 0.00 0.00 41.41 5.36
3237 4600 0.811616 GGCCACGCTCATTCTCGATT 60.812 55.000 0.00 0.00 0.00 3.34
3238 4601 0.302890 GCCACGCTCATTCTCGATTG 59.697 55.000 0.00 0.00 0.00 2.67
3239 4602 1.645034 CCACGCTCATTCTCGATTGT 58.355 50.000 0.00 0.00 0.00 2.71
3240 4603 2.809446 CCACGCTCATTCTCGATTGTA 58.191 47.619 0.00 0.00 0.00 2.41
3241 4604 3.186909 CCACGCTCATTCTCGATTGTAA 58.813 45.455 0.00 0.00 0.00 2.41
3242 4605 3.000322 CCACGCTCATTCTCGATTGTAAC 60.000 47.826 0.00 0.00 0.00 2.50
3243 4606 2.852413 ACGCTCATTCTCGATTGTAACG 59.148 45.455 0.00 0.00 0.00 3.18
3244 4607 2.346741 CGCTCATTCTCGATTGTAACGC 60.347 50.000 0.00 0.00 0.00 4.84
3245 4608 2.033662 GCTCATTCTCGATTGTAACGCC 60.034 50.000 0.00 0.00 0.00 5.68
3246 4609 2.540101 CTCATTCTCGATTGTAACGCCC 59.460 50.000 0.00 0.00 0.00 6.13
3247 4610 1.257936 CATTCTCGATTGTAACGCCCG 59.742 52.381 0.00 0.00 0.00 6.13
3248 4611 0.527113 TTCTCGATTGTAACGCCCGA 59.473 50.000 0.00 0.00 0.00 5.14
3249 4612 0.527113 TCTCGATTGTAACGCCCGAA 59.473 50.000 0.00 0.00 0.00 4.30
3250 4613 1.135527 TCTCGATTGTAACGCCCGAAT 59.864 47.619 0.00 0.00 0.00 3.34
3251 4614 2.358582 TCTCGATTGTAACGCCCGAATA 59.641 45.455 0.00 0.00 0.00 1.75
3252 4615 3.117794 CTCGATTGTAACGCCCGAATAA 58.882 45.455 0.00 0.00 0.00 1.40
3253 4616 3.719924 TCGATTGTAACGCCCGAATAAT 58.280 40.909 0.00 0.00 0.00 1.28
3254 4617 4.121317 TCGATTGTAACGCCCGAATAATT 58.879 39.130 0.00 0.00 0.00 1.40
3255 4618 5.288015 TCGATTGTAACGCCCGAATAATTA 58.712 37.500 0.00 0.00 0.00 1.40
3256 4619 5.927689 TCGATTGTAACGCCCGAATAATTAT 59.072 36.000 0.00 0.00 0.00 1.28
3257 4620 6.013085 CGATTGTAACGCCCGAATAATTATG 58.987 40.000 0.00 0.00 0.00 1.90
3258 4621 4.735662 TGTAACGCCCGAATAATTATGC 57.264 40.909 0.00 0.00 0.00 3.14
3259 4622 4.382291 TGTAACGCCCGAATAATTATGCT 58.618 39.130 0.00 0.00 0.00 3.79
3260 4623 5.539979 TGTAACGCCCGAATAATTATGCTA 58.460 37.500 0.00 0.00 0.00 3.49
3261 4624 5.406175 TGTAACGCCCGAATAATTATGCTAC 59.594 40.000 0.00 0.00 0.00 3.58
3262 4625 3.997762 ACGCCCGAATAATTATGCTACA 58.002 40.909 0.00 0.00 0.00 2.74
3263 4626 3.994392 ACGCCCGAATAATTATGCTACAG 59.006 43.478 0.00 0.00 0.00 2.74
3264 4627 3.994392 CGCCCGAATAATTATGCTACAGT 59.006 43.478 0.00 0.00 0.00 3.55
3265 4628 5.165676 CGCCCGAATAATTATGCTACAGTA 58.834 41.667 0.00 0.00 0.00 2.74
3266 4629 5.636121 CGCCCGAATAATTATGCTACAGTAA 59.364 40.000 0.00 0.00 0.00 2.24
3267 4630 6.146510 CGCCCGAATAATTATGCTACAGTAAA 59.853 38.462 0.00 0.00 0.00 2.01
3268 4631 7.307514 CGCCCGAATAATTATGCTACAGTAAAA 60.308 37.037 0.00 0.00 0.00 1.52
3269 4632 7.801783 GCCCGAATAATTATGCTACAGTAAAAC 59.198 37.037 0.00 0.00 0.00 2.43
3270 4633 9.052759 CCCGAATAATTATGCTACAGTAAAACT 57.947 33.333 0.00 0.00 0.00 2.66
3279 4642 9.817809 TTATGCTACAGTAAAACTCTCCTAATG 57.182 33.333 0.00 0.00 0.00 1.90
3280 4643 7.476540 TGCTACAGTAAAACTCTCCTAATGA 57.523 36.000 0.00 0.00 0.00 2.57
3281 4644 8.079211 TGCTACAGTAAAACTCTCCTAATGAT 57.921 34.615 0.00 0.00 0.00 2.45
3282 4645 7.981789 TGCTACAGTAAAACTCTCCTAATGATG 59.018 37.037 0.00 0.00 0.00 3.07
3283 4646 7.042389 GCTACAGTAAAACTCTCCTAATGATGC 60.042 40.741 0.00 0.00 0.00 3.91
3284 4647 6.116126 ACAGTAAAACTCTCCTAATGATGCC 58.884 40.000 0.00 0.00 0.00 4.40
3285 4648 6.115446 CAGTAAAACTCTCCTAATGATGCCA 58.885 40.000 0.00 0.00 0.00 4.92
3286 4649 6.769822 CAGTAAAACTCTCCTAATGATGCCAT 59.230 38.462 0.00 0.00 33.66 4.40
3287 4650 6.769822 AGTAAAACTCTCCTAATGATGCCATG 59.230 38.462 0.00 0.00 32.36 3.66
3288 4651 4.785346 AACTCTCCTAATGATGCCATGT 57.215 40.909 0.00 0.00 32.36 3.21
3289 4652 4.348863 ACTCTCCTAATGATGCCATGTC 57.651 45.455 0.00 0.00 32.36 3.06
3290 4653 3.713248 ACTCTCCTAATGATGCCATGTCA 59.287 43.478 0.00 0.00 32.36 3.58
3291 4654 4.350225 ACTCTCCTAATGATGCCATGTCAT 59.650 41.667 0.00 0.00 37.91 3.06
3292 4655 4.903054 TCTCCTAATGATGCCATGTCATC 58.097 43.478 9.79 9.79 42.33 2.92
3293 4656 4.596212 TCTCCTAATGATGCCATGTCATCT 59.404 41.667 17.00 1.38 42.44 2.90
3294 4657 4.648651 TCCTAATGATGCCATGTCATCTG 58.351 43.478 17.00 5.70 42.44 2.90
3295 4658 4.103627 TCCTAATGATGCCATGTCATCTGT 59.896 41.667 17.00 7.87 42.44 3.41
3296 4659 4.215613 CCTAATGATGCCATGTCATCTGTG 59.784 45.833 17.00 5.70 42.44 3.66
3297 4660 3.570912 ATGATGCCATGTCATCTGTGA 57.429 42.857 17.00 0.00 42.44 3.58
3298 4661 3.570912 TGATGCCATGTCATCTGTGAT 57.429 42.857 17.00 0.00 42.44 3.06
3299 4662 3.893521 TGATGCCATGTCATCTGTGATT 58.106 40.909 17.00 0.00 42.44 2.57
3300 4663 5.038651 TGATGCCATGTCATCTGTGATTA 57.961 39.130 17.00 0.00 42.44 1.75
3301 4664 4.818005 TGATGCCATGTCATCTGTGATTAC 59.182 41.667 17.00 0.00 42.44 1.89
3302 4665 4.492494 TGCCATGTCATCTGTGATTACT 57.508 40.909 0.00 0.00 36.60 2.24
3303 4666 4.193865 TGCCATGTCATCTGTGATTACTG 58.806 43.478 0.00 0.00 36.60 2.74
3304 4667 4.194640 GCCATGTCATCTGTGATTACTGT 58.805 43.478 0.00 0.00 36.60 3.55
3305 4668 4.637534 GCCATGTCATCTGTGATTACTGTT 59.362 41.667 0.00 0.00 36.60 3.16
3306 4669 5.448225 GCCATGTCATCTGTGATTACTGTTG 60.448 44.000 0.00 0.75 36.60 3.33
3307 4670 5.448225 CCATGTCATCTGTGATTACTGTTGC 60.448 44.000 0.00 0.00 36.60 4.17
3308 4671 4.898320 TGTCATCTGTGATTACTGTTGCT 58.102 39.130 0.00 0.00 36.60 3.91
3309 4672 6.036577 TGTCATCTGTGATTACTGTTGCTA 57.963 37.500 0.00 0.00 36.60 3.49
3310 4673 6.463360 TGTCATCTGTGATTACTGTTGCTAA 58.537 36.000 0.00 0.00 36.60 3.09
3311 4674 6.934083 TGTCATCTGTGATTACTGTTGCTAAA 59.066 34.615 0.00 0.00 36.60 1.85
3312 4675 7.095229 TGTCATCTGTGATTACTGTTGCTAAAC 60.095 37.037 0.00 0.00 36.60 2.01
3313 4676 7.118390 GTCATCTGTGATTACTGTTGCTAAACT 59.882 37.037 0.00 0.00 36.60 2.66
3314 4677 7.661437 TCATCTGTGATTACTGTTGCTAAACTT 59.339 33.333 0.00 0.00 37.19 2.66
3315 4678 7.801716 TCTGTGATTACTGTTGCTAAACTTT 57.198 32.000 0.00 0.00 37.19 2.66
3316 4679 7.861630 TCTGTGATTACTGTTGCTAAACTTTC 58.138 34.615 0.00 0.00 37.19 2.62
3317 4680 6.655062 TGTGATTACTGTTGCTAAACTTTCG 58.345 36.000 0.00 0.00 37.19 3.46
3318 4681 6.259167 TGTGATTACTGTTGCTAAACTTTCGT 59.741 34.615 0.00 0.00 37.19 3.85
3319 4682 7.130269 GTGATTACTGTTGCTAAACTTTCGTT 58.870 34.615 0.00 0.00 37.19 3.85
3320 4683 8.277713 GTGATTACTGTTGCTAAACTTTCGTTA 58.722 33.333 0.00 0.00 37.19 3.18
3321 4684 8.492748 TGATTACTGTTGCTAAACTTTCGTTAG 58.507 33.333 0.00 0.00 37.19 2.34
3322 4685 7.775397 TTACTGTTGCTAAACTTTCGTTAGT 57.225 32.000 0.00 0.00 37.19 2.24
3323 4686 6.673154 ACTGTTGCTAAACTTTCGTTAGTT 57.327 33.333 0.18 0.18 39.97 2.24
3324 4687 6.712549 ACTGTTGCTAAACTTTCGTTAGTTC 58.287 36.000 5.61 0.00 37.37 3.01
3325 4688 6.314400 ACTGTTGCTAAACTTTCGTTAGTTCA 59.686 34.615 5.61 0.00 37.37 3.18
3326 4689 7.074507 TGTTGCTAAACTTTCGTTAGTTCAA 57.925 32.000 5.61 4.16 37.37 2.69
3327 4690 7.528307 TGTTGCTAAACTTTCGTTAGTTCAAA 58.472 30.769 5.61 0.00 37.37 2.69
3328 4691 7.482428 TGTTGCTAAACTTTCGTTAGTTCAAAC 59.518 33.333 5.61 8.07 37.37 2.93
3329 4692 6.488817 TGCTAAACTTTCGTTAGTTCAAACC 58.511 36.000 5.61 0.00 37.37 3.27
3330 4693 5.618395 GCTAAACTTTCGTTAGTTCAAACCG 59.382 40.000 5.61 0.00 37.37 4.44
3331 4694 5.799681 AAACTTTCGTTAGTTCAAACCGA 57.200 34.783 5.61 0.00 37.37 4.69
3332 4695 5.996669 AACTTTCGTTAGTTCAAACCGAT 57.003 34.783 0.00 0.00 33.12 4.18
3333 4696 5.996669 ACTTTCGTTAGTTCAAACCGATT 57.003 34.783 0.00 0.00 0.00 3.34
3334 4697 5.982324 ACTTTCGTTAGTTCAAACCGATTC 58.018 37.500 0.00 0.00 0.00 2.52
3335 4698 5.524646 ACTTTCGTTAGTTCAAACCGATTCA 59.475 36.000 0.00 0.00 0.00 2.57
3336 4699 5.987777 TTCGTTAGTTCAAACCGATTCAA 57.012 34.783 0.00 0.00 0.00 2.69
3337 4700 5.987777 TCGTTAGTTCAAACCGATTCAAA 57.012 34.783 0.00 0.00 0.00 2.69
3338 4701 6.360844 TCGTTAGTTCAAACCGATTCAAAA 57.639 33.333 0.00 0.00 0.00 2.44
3339 4702 6.783162 TCGTTAGTTCAAACCGATTCAAAAA 58.217 32.000 0.00 0.00 0.00 1.94
3362 4725 8.654230 AAAAATGGCAAACAACAAAAGTTTTT 57.346 23.077 0.00 0.00 37.10 1.94
3363 4726 9.750125 AAAAATGGCAAACAACAAAAGTTTTTA 57.250 22.222 0.00 0.00 37.10 1.52
3364 4727 9.750125 AAAATGGCAAACAACAAAAGTTTTTAA 57.250 22.222 0.00 0.00 37.10 1.52
3365 4728 9.750125 AAATGGCAAACAACAAAAGTTTTTAAA 57.250 22.222 0.00 0.00 37.10 1.52
3366 4729 9.750125 AATGGCAAACAACAAAAGTTTTTAAAA 57.250 22.222 0.00 0.00 37.10 1.52
3367 4730 8.788409 TGGCAAACAACAAAAGTTTTTAAAAG 57.212 26.923 0.00 0.00 37.10 2.27
3368 4731 8.406297 TGGCAAACAACAAAAGTTTTTAAAAGT 58.594 25.926 0.00 0.00 37.10 2.66
3369 4732 9.239002 GGCAAACAACAAAAGTTTTTAAAAGTT 57.761 25.926 4.82 4.82 37.10 2.66
3386 4749 9.813080 TTTAAAAGTTGAAACAAAAATGTTCGG 57.187 25.926 0.00 0.00 0.00 4.30
3387 4750 7.428282 AAAAGTTGAAACAAAAATGTTCGGT 57.572 28.000 0.00 0.00 0.00 4.69
3388 4751 7.428282 AAAGTTGAAACAAAAATGTTCGGTT 57.572 28.000 0.00 0.00 0.00 4.44
3389 4752 8.535690 AAAGTTGAAACAAAAATGTTCGGTTA 57.464 26.923 0.00 0.00 0.00 2.85
3390 4753 7.749539 AGTTGAAACAAAAATGTTCGGTTAG 57.250 32.000 0.00 0.00 0.00 2.34
3391 4754 7.317390 AGTTGAAACAAAAATGTTCGGTTAGT 58.683 30.769 0.00 0.00 0.00 2.24
3392 4755 7.274686 AGTTGAAACAAAAATGTTCGGTTAGTG 59.725 33.333 0.00 0.00 0.00 2.74
3393 4756 5.517054 TGAAACAAAAATGTTCGGTTAGTGC 59.483 36.000 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
544 553 2.395360 TGATGCGTAAGGCCGTTGC 61.395 57.895 0.00 2.11 42.61 4.17
601 610 8.753133 TCATATCATATGTCGAGGCTCTTTTAT 58.247 33.333 13.50 4.52 0.00 1.40
693 703 4.243008 TGGAACGCGAACTGGCCA 62.243 61.111 15.93 4.71 0.00 5.36
782 814 3.067320 GCCATGAACTTTTGGAGGATAGC 59.933 47.826 0.00 0.00 34.81 2.97
783 815 4.530875 AGCCATGAACTTTTGGAGGATAG 58.469 43.478 0.00 0.00 34.81 2.08
784 816 4.591321 AGCCATGAACTTTTGGAGGATA 57.409 40.909 0.00 0.00 34.81 2.59
785 817 3.463048 AGCCATGAACTTTTGGAGGAT 57.537 42.857 0.00 0.00 34.81 3.24
827 859 0.104986 AGATGATGGGATGGGACGGA 60.105 55.000 0.00 0.00 0.00 4.69
828 860 1.552337 CTAGATGATGGGATGGGACGG 59.448 57.143 0.00 0.00 0.00 4.79
829 861 1.066573 GCTAGATGATGGGATGGGACG 60.067 57.143 0.00 0.00 0.00 4.79
830 862 1.280421 GGCTAGATGATGGGATGGGAC 59.720 57.143 0.00 0.00 0.00 4.46
936 973 5.069501 ACTGAGACCGGTGTAAGAAATAC 57.930 43.478 22.80 0.00 34.92 1.89
938 975 3.833070 AGACTGAGACCGGTGTAAGAAAT 59.167 43.478 22.80 0.00 30.59 2.17
1076 1119 2.285743 AGGCCAGGTCTTCCTCCC 60.286 66.667 5.01 0.00 43.07 4.30
1081 1124 2.726351 CCTCCGAGGCCAGGTCTTC 61.726 68.421 15.72 0.00 0.00 2.87
1299 1342 3.133464 CTGGACCCGGCGTACGTA 61.133 66.667 17.90 0.00 42.24 3.57
1376 1419 2.193536 GGCAGGTTGTTGGCGTCTT 61.194 57.895 0.00 0.00 33.76 3.01
1377 1420 2.594592 GGCAGGTTGTTGGCGTCT 60.595 61.111 0.00 0.00 33.76 4.18
1433 1476 1.304381 TGCCCTTGGTCCTTGATGC 60.304 57.895 0.00 0.00 0.00 3.91
1495 1542 6.734137 TCACATAGTTTTTGACACATCCAAC 58.266 36.000 0.00 0.00 0.00 3.77
1511 1563 4.880120 CCACAGCAGAATGAATCACATAGT 59.120 41.667 0.00 0.00 39.69 2.12
1514 1566 3.021695 CCCACAGCAGAATGAATCACAT 58.978 45.455 0.00 0.00 39.69 3.21
1527 1579 0.323360 GTTTATGGCCTCCCACAGCA 60.323 55.000 3.32 0.00 45.77 4.41
1542 1594 5.183140 GCAGCTCCCTTATTTGAACAGTTTA 59.817 40.000 0.00 0.00 0.00 2.01
1552 1604 0.396278 GCCCAGCAGCTCCCTTATTT 60.396 55.000 0.00 0.00 0.00 1.40
1553 1605 1.228510 GCCCAGCAGCTCCCTTATT 59.771 57.895 0.00 0.00 0.00 1.40
1554 1606 2.922234 GCCCAGCAGCTCCCTTAT 59.078 61.111 0.00 0.00 0.00 1.73
1555 1607 3.785859 CGCCCAGCAGCTCCCTTA 61.786 66.667 0.00 0.00 0.00 2.69
1796 1848 1.947456 GAAGCCGGGGATTATTGTCAC 59.053 52.381 2.18 0.00 0.00 3.67
1797 1849 1.133915 GGAAGCCGGGGATTATTGTCA 60.134 52.381 2.18 0.00 0.00 3.58
1798 1850 1.605753 GGAAGCCGGGGATTATTGTC 58.394 55.000 2.18 0.00 0.00 3.18
1799 1851 0.179029 CGGAAGCCGGGGATTATTGT 60.179 55.000 2.18 0.00 44.15 2.71
1821 1876 3.109619 GAGACAAGATTCTCGGCTAACG 58.890 50.000 0.00 0.00 46.11 3.18
1823 1878 4.801330 TTGAGACAAGATTCTCGGCTAA 57.199 40.909 0.00 0.00 44.48 3.09
1825 1880 3.685139 TTTGAGACAAGATTCTCGGCT 57.315 42.857 0.00 0.00 44.48 5.52
1858 1925 0.037139 TCCTGCAACATTTGGCATGC 60.037 50.000 9.90 9.90 39.65 4.06
1935 2002 1.134530 CGACGGCTTTCTGTAGAGCG 61.135 60.000 0.00 0.00 39.78 5.03
1938 2005 1.214589 GGCGACGGCTTTCTGTAGA 59.785 57.895 15.00 0.00 39.81 2.59
2044 2111 5.713025 AGGCATTTGTGATTGTGTATCAAC 58.287 37.500 0.00 0.00 44.62 3.18
2059 2126 4.860907 GCATAGACAAGAACAAGGCATTTG 59.139 41.667 0.00 0.00 42.68 2.32
2060 2127 4.768968 AGCATAGACAAGAACAAGGCATTT 59.231 37.500 0.00 0.00 0.00 2.32
2061 2128 4.338879 AGCATAGACAAGAACAAGGCATT 58.661 39.130 0.00 0.00 0.00 3.56
2062 2129 3.960571 AGCATAGACAAGAACAAGGCAT 58.039 40.909 0.00 0.00 0.00 4.40
2063 2130 3.423539 AGCATAGACAAGAACAAGGCA 57.576 42.857 0.00 0.00 0.00 4.75
2064 2131 4.878397 ACATAGCATAGACAAGAACAAGGC 59.122 41.667 0.00 0.00 0.00 4.35
2065 2132 6.595326 TGAACATAGCATAGACAAGAACAAGG 59.405 38.462 0.00 0.00 0.00 3.61
2070 2137 6.935167 TCACTGAACATAGCATAGACAAGAA 58.065 36.000 0.00 0.00 0.00 2.52
2079 2146 5.114780 GTCACTCATCACTGAACATAGCAT 58.885 41.667 0.00 0.00 0.00 3.79
2357 3708 1.878656 GAGACCCGTCCCTGACTGTG 61.879 65.000 0.00 0.00 0.00 3.66
2381 3732 3.006644 TGCATGTCATCTAGAGCTCATCC 59.993 47.826 17.77 0.00 0.00 3.51
2404 3755 2.742774 CACTCGGAATGATCGCATGTA 58.257 47.619 0.00 0.00 34.26 2.29
2409 3760 1.543941 CTCGCACTCGGAATGATCGC 61.544 60.000 0.00 0.00 36.13 4.58
2419 3770 4.767841 ACGCAGAGCTCGCACTCG 62.768 66.667 23.57 17.88 41.77 4.18
2426 3777 0.244994 TTCTCCTCAACGCAGAGCTC 59.755 55.000 5.27 5.27 34.26 4.09
2491 3842 7.100829 TGCTTACGCTTATTACATTCGTATG 57.899 36.000 0.00 0.00 35.87 2.39
2492 3843 7.703298 TTGCTTACGCTTATTACATTCGTAT 57.297 32.000 0.00 0.00 35.87 3.06
2507 3858 3.609409 GCTATAATGCCCTTTGCTTACGC 60.609 47.826 0.00 0.00 42.00 4.42
2520 3871 7.529880 AGTTGCAATTCTTTTGCTATAATGC 57.470 32.000 0.59 0.00 45.13 3.56
2561 3918 9.439500 AATACAACCCAATCTTGAATTTCATTG 57.561 29.630 0.00 2.46 0.00 2.82
2563 3920 8.814931 TGAATACAACCCAATCTTGAATTTCAT 58.185 29.630 0.00 0.00 0.00 2.57
2589 3946 4.292306 AGGTGTTGGTTCAGGGAAATATCT 59.708 41.667 0.00 0.00 0.00 1.98
2593 3950 2.597455 CAGGTGTTGGTTCAGGGAAAT 58.403 47.619 0.00 0.00 0.00 2.17
2594 3951 2.026905 GCAGGTGTTGGTTCAGGGAAA 61.027 52.381 0.00 0.00 0.00 3.13
2595 3952 0.467290 GCAGGTGTTGGTTCAGGGAA 60.467 55.000 0.00 0.00 0.00 3.97
2596 3953 1.150536 GCAGGTGTTGGTTCAGGGA 59.849 57.895 0.00 0.00 0.00 4.20
2597 3954 1.151450 AGCAGGTGTTGGTTCAGGG 59.849 57.895 0.00 0.00 32.47 4.45
2598 3955 1.174712 CCAGCAGGTGTTGGTTCAGG 61.175 60.000 4.75 0.00 40.91 3.86
2599 3956 2.334307 CCAGCAGGTGTTGGTTCAG 58.666 57.895 4.75 0.00 40.91 3.02
2600 3957 4.577152 CCAGCAGGTGTTGGTTCA 57.423 55.556 4.75 0.00 40.91 3.18
2608 3965 6.880934 TATTCAGGGGAAAACCAGCAGGTG 62.881 50.000 0.00 0.00 41.05 4.00
2609 3966 4.177045 ATTCAGGGGAAAACCAGCAGGT 62.177 50.000 0.00 0.00 42.07 4.00
2610 3967 0.178964 TTCAGGGGAAAACCAGCAGG 60.179 55.000 0.00 0.00 42.91 4.85
2611 3968 1.928868 ATTCAGGGGAAAACCAGCAG 58.071 50.000 0.00 0.00 42.91 4.24
2612 3969 2.647299 TCTATTCAGGGGAAAACCAGCA 59.353 45.455 0.00 0.00 42.91 4.41
2613 3970 3.366052 TCTATTCAGGGGAAAACCAGC 57.634 47.619 0.00 0.00 42.91 4.85
2614 3971 4.130118 CGATCTATTCAGGGGAAAACCAG 58.870 47.826 0.00 0.00 42.91 4.00
2615 3972 3.778075 TCGATCTATTCAGGGGAAAACCA 59.222 43.478 0.00 0.00 42.91 3.67
2616 3973 4.417426 TCGATCTATTCAGGGGAAAACC 57.583 45.455 0.00 0.00 36.43 3.27
2617 3974 6.055588 TCAATCGATCTATTCAGGGGAAAAC 58.944 40.000 0.00 0.00 36.43 2.43
2618 3975 6.247229 TCAATCGATCTATTCAGGGGAAAA 57.753 37.500 0.00 0.00 36.43 2.29
2619 3976 5.743130 GCTCAATCGATCTATTCAGGGGAAA 60.743 44.000 0.00 0.00 36.43 3.13
2620 3977 4.262635 GCTCAATCGATCTATTCAGGGGAA 60.263 45.833 0.00 0.00 37.45 3.97
2621 3978 3.259374 GCTCAATCGATCTATTCAGGGGA 59.741 47.826 0.00 0.00 0.00 4.81
2622 3979 3.007290 TGCTCAATCGATCTATTCAGGGG 59.993 47.826 0.00 0.00 0.00 4.79
2623 3980 4.263018 TGCTCAATCGATCTATTCAGGG 57.737 45.455 0.00 0.00 0.00 4.45
2624 3981 4.689812 CCTTGCTCAATCGATCTATTCAGG 59.310 45.833 0.00 0.00 0.00 3.86
2625 3982 5.177142 CACCTTGCTCAATCGATCTATTCAG 59.823 44.000 0.00 0.00 0.00 3.02
2626 3983 5.052481 CACCTTGCTCAATCGATCTATTCA 58.948 41.667 0.00 0.00 0.00 2.57
2627 3984 5.176590 GTCACCTTGCTCAATCGATCTATTC 59.823 44.000 0.00 0.00 0.00 1.75
2628 3985 5.053145 GTCACCTTGCTCAATCGATCTATT 58.947 41.667 0.00 0.00 0.00 1.73
2629 3986 4.502259 GGTCACCTTGCTCAATCGATCTAT 60.502 45.833 0.00 0.00 0.00 1.98
2630 3987 3.181475 GGTCACCTTGCTCAATCGATCTA 60.181 47.826 0.00 0.00 0.00 1.98
2631 3988 2.419297 GGTCACCTTGCTCAATCGATCT 60.419 50.000 0.00 0.00 0.00 2.75
2632 3989 1.936547 GGTCACCTTGCTCAATCGATC 59.063 52.381 0.00 0.00 0.00 3.69
2633 3990 1.278985 TGGTCACCTTGCTCAATCGAT 59.721 47.619 0.00 0.00 0.00 3.59
2634 3991 0.684535 TGGTCACCTTGCTCAATCGA 59.315 50.000 0.00 0.00 0.00 3.59
2635 3992 1.399440 CATGGTCACCTTGCTCAATCG 59.601 52.381 0.00 0.00 0.00 3.34
2636 3993 2.421424 GACATGGTCACCTTGCTCAATC 59.579 50.000 9.67 0.00 32.73 2.67
2637 3994 2.440409 GACATGGTCACCTTGCTCAAT 58.560 47.619 9.67 0.00 32.73 2.57
2638 3995 1.877680 CGACATGGTCACCTTGCTCAA 60.878 52.381 9.67 0.00 32.73 3.02
2639 3996 0.320683 CGACATGGTCACCTTGCTCA 60.321 55.000 9.67 0.00 32.73 4.26
2640 3997 1.021390 CCGACATGGTCACCTTGCTC 61.021 60.000 9.67 6.05 32.73 4.26
2641 3998 1.003355 CCGACATGGTCACCTTGCT 60.003 57.895 9.67 0.00 32.73 3.91
2642 3999 2.040544 CCCGACATGGTCACCTTGC 61.041 63.158 9.67 2.38 32.73 4.01
2643 4000 2.040544 GCCCGACATGGTCACCTTG 61.041 63.158 8.20 8.20 35.15 3.61
2644 4001 2.351276 GCCCGACATGGTCACCTT 59.649 61.111 0.00 0.00 35.15 3.50
2645 4002 4.082523 CGCCCGACATGGTCACCT 62.083 66.667 0.00 0.00 35.15 4.00
2646 4003 4.077184 TCGCCCGACATGGTCACC 62.077 66.667 0.00 0.00 35.15 4.02
2647 4004 2.509336 CTCGCCCGACATGGTCAC 60.509 66.667 0.00 0.00 35.15 3.67
2648 4005 3.770040 CCTCGCCCGACATGGTCA 61.770 66.667 0.00 0.00 35.15 4.02
2649 4006 4.530857 CCCTCGCCCGACATGGTC 62.531 72.222 0.00 0.00 35.15 4.02
2662 4019 3.299190 ATCGCCTAGCTCGCCCTC 61.299 66.667 0.00 0.00 0.00 4.30
2663 4020 3.610669 CATCGCCTAGCTCGCCCT 61.611 66.667 0.00 0.00 0.00 5.19
2664 4021 2.644555 TTTCATCGCCTAGCTCGCCC 62.645 60.000 0.00 0.00 0.00 6.13
2665 4022 1.218230 CTTTCATCGCCTAGCTCGCC 61.218 60.000 0.00 0.00 0.00 5.54
2666 4023 1.826299 GCTTTCATCGCCTAGCTCGC 61.826 60.000 0.00 0.00 0.00 5.03
2667 4024 1.543941 CGCTTTCATCGCCTAGCTCG 61.544 60.000 0.00 0.00 0.00 5.03
2668 4025 0.249073 TCGCTTTCATCGCCTAGCTC 60.249 55.000 0.00 0.00 0.00 4.09
2669 4026 0.175760 TTCGCTTTCATCGCCTAGCT 59.824 50.000 0.00 0.00 0.00 3.32
2670 4027 1.221414 ATTCGCTTTCATCGCCTAGC 58.779 50.000 0.00 0.00 0.00 3.42
2671 4028 3.643763 ACTATTCGCTTTCATCGCCTAG 58.356 45.455 0.00 0.00 0.00 3.02
2672 4029 3.728076 ACTATTCGCTTTCATCGCCTA 57.272 42.857 0.00 0.00 0.00 3.93
2673 4030 2.604046 ACTATTCGCTTTCATCGCCT 57.396 45.000 0.00 0.00 0.00 5.52
2674 4031 3.381949 AGTACTATTCGCTTTCATCGCC 58.618 45.455 0.00 0.00 0.00 5.54
2675 4032 5.913514 TCTTAGTACTATTCGCTTTCATCGC 59.086 40.000 2.79 0.00 0.00 4.58
2676 4033 6.087028 GCTCTTAGTACTATTCGCTTTCATCG 59.913 42.308 2.79 0.00 0.00 3.84
2677 4034 6.918569 TGCTCTTAGTACTATTCGCTTTCATC 59.081 38.462 2.79 0.00 0.00 2.92
2678 4035 6.806751 TGCTCTTAGTACTATTCGCTTTCAT 58.193 36.000 2.79 0.00 0.00 2.57
2679 4036 6.203808 TGCTCTTAGTACTATTCGCTTTCA 57.796 37.500 2.79 0.00 0.00 2.69
2680 4037 7.142680 AGATGCTCTTAGTACTATTCGCTTTC 58.857 38.462 2.79 7.87 0.00 2.62
2681 4038 7.045126 AGATGCTCTTAGTACTATTCGCTTT 57.955 36.000 2.79 0.00 0.00 3.51
2682 4039 6.294286 GGAGATGCTCTTAGTACTATTCGCTT 60.294 42.308 2.79 4.95 0.00 4.68
2683 4040 5.182380 GGAGATGCTCTTAGTACTATTCGCT 59.818 44.000 2.79 0.00 0.00 4.93
2684 4041 5.048643 TGGAGATGCTCTTAGTACTATTCGC 60.049 44.000 2.79 7.08 0.00 4.70
2685 4042 6.561737 TGGAGATGCTCTTAGTACTATTCG 57.438 41.667 2.79 0.00 0.00 3.34
2686 4043 7.717568 TGTTGGAGATGCTCTTAGTACTATTC 58.282 38.462 2.79 0.00 0.00 1.75
2687 4044 7.661536 TGTTGGAGATGCTCTTAGTACTATT 57.338 36.000 2.79 0.00 0.00 1.73
2800 4157 0.179225 CGCGCTCTGCATTTTAACGT 60.179 50.000 5.56 0.00 46.97 3.99
3010 4373 7.740246 TGATTTGTGCGTTCGTTATTGTATTA 58.260 30.769 0.00 0.00 0.00 0.98
3048 4411 2.120909 GTGGGCATGGAATGGACGG 61.121 63.158 0.00 0.00 46.86 4.79
3147 4510 2.125766 GACGGAGGGCTGAAAGGGTT 62.126 60.000 0.00 0.00 0.00 4.11
3175 4538 1.069204 TGAGCTCTTGGGATATCACGC 59.931 52.381 16.19 0.00 0.00 5.34
3178 4541 5.397360 TCAGTATGAGCTCTTGGGATATCA 58.603 41.667 16.19 0.00 42.56 2.15
3237 4600 4.382291 AGCATAATTATTCGGGCGTTACA 58.618 39.130 0.00 0.00 0.00 2.41
3238 4601 5.406175 TGTAGCATAATTATTCGGGCGTTAC 59.594 40.000 0.00 0.00 0.00 2.50
3239 4602 5.539979 TGTAGCATAATTATTCGGGCGTTA 58.460 37.500 0.00 0.00 0.00 3.18
3240 4603 4.382291 TGTAGCATAATTATTCGGGCGTT 58.618 39.130 0.00 0.00 0.00 4.84
3241 4604 3.994392 CTGTAGCATAATTATTCGGGCGT 59.006 43.478 0.00 0.00 0.00 5.68
3242 4605 3.994392 ACTGTAGCATAATTATTCGGGCG 59.006 43.478 0.00 0.00 0.00 6.13
3243 4606 7.429636 TTTACTGTAGCATAATTATTCGGGC 57.570 36.000 0.00 0.00 0.00 6.13
3244 4607 9.052759 AGTTTTACTGTAGCATAATTATTCGGG 57.947 33.333 0.00 0.00 0.00 5.14
3253 4616 9.817809 CATTAGGAGAGTTTTACTGTAGCATAA 57.182 33.333 0.00 0.00 0.00 1.90
3254 4617 9.197306 TCATTAGGAGAGTTTTACTGTAGCATA 57.803 33.333 0.00 0.00 0.00 3.14
3255 4618 8.079211 TCATTAGGAGAGTTTTACTGTAGCAT 57.921 34.615 0.00 0.00 0.00 3.79
3256 4619 7.476540 TCATTAGGAGAGTTTTACTGTAGCA 57.523 36.000 0.00 0.00 0.00 3.49
3257 4620 7.042389 GCATCATTAGGAGAGTTTTACTGTAGC 60.042 40.741 0.00 0.00 0.00 3.58
3258 4621 7.439655 GGCATCATTAGGAGAGTTTTACTGTAG 59.560 40.741 0.00 0.00 0.00 2.74
3259 4622 7.093068 TGGCATCATTAGGAGAGTTTTACTGTA 60.093 37.037 0.00 0.00 0.00 2.74
3260 4623 6.116126 GGCATCATTAGGAGAGTTTTACTGT 58.884 40.000 0.00 0.00 0.00 3.55
3261 4624 6.115446 TGGCATCATTAGGAGAGTTTTACTG 58.885 40.000 0.00 0.00 0.00 2.74
3262 4625 6.313519 TGGCATCATTAGGAGAGTTTTACT 57.686 37.500 0.00 0.00 0.00 2.24
3263 4626 6.543831 ACATGGCATCATTAGGAGAGTTTTAC 59.456 38.462 0.00 0.00 0.00 2.01
3264 4627 6.662755 ACATGGCATCATTAGGAGAGTTTTA 58.337 36.000 0.00 0.00 0.00 1.52
3265 4628 5.513233 ACATGGCATCATTAGGAGAGTTTT 58.487 37.500 0.00 0.00 0.00 2.43
3266 4629 5.121380 ACATGGCATCATTAGGAGAGTTT 57.879 39.130 0.00 0.00 0.00 2.66
3267 4630 4.164796 TGACATGGCATCATTAGGAGAGTT 59.835 41.667 0.00 0.00 0.00 3.01
3268 4631 3.713248 TGACATGGCATCATTAGGAGAGT 59.287 43.478 0.00 0.00 0.00 3.24
3269 4632 4.347360 TGACATGGCATCATTAGGAGAG 57.653 45.455 0.00 0.00 0.00 3.20
3270 4633 4.596212 AGATGACATGGCATCATTAGGAGA 59.404 41.667 36.86 0.00 45.52 3.71
3271 4634 4.695928 CAGATGACATGGCATCATTAGGAG 59.304 45.833 36.86 16.86 45.52 3.69
3272 4635 4.103627 ACAGATGACATGGCATCATTAGGA 59.896 41.667 36.86 0.00 45.52 2.94
3273 4636 4.215613 CACAGATGACATGGCATCATTAGG 59.784 45.833 36.86 23.64 45.52 2.69
3274 4637 5.061179 TCACAGATGACATGGCATCATTAG 58.939 41.667 36.86 25.94 45.52 1.73
3275 4638 5.038651 TCACAGATGACATGGCATCATTA 57.961 39.130 36.86 19.80 45.52 1.90
3276 4639 3.893521 TCACAGATGACATGGCATCATT 58.106 40.909 36.86 23.22 45.52 2.57
3277 4640 3.570912 TCACAGATGACATGGCATCAT 57.429 42.857 36.86 24.52 45.52 2.45
3278 4641 3.570912 ATCACAGATGACATGGCATCA 57.429 42.857 36.86 20.84 45.52 3.07
3279 4642 5.049612 CAGTAATCACAGATGACATGGCATC 60.050 44.000 30.85 30.85 43.88 3.91
3280 4643 4.820173 CAGTAATCACAGATGACATGGCAT 59.180 41.667 15.73 15.73 37.79 4.40
3281 4644 4.193865 CAGTAATCACAGATGACATGGCA 58.806 43.478 2.18 2.18 37.79 4.92
3282 4645 4.194640 ACAGTAATCACAGATGACATGGC 58.805 43.478 0.00 0.00 37.79 4.40
3283 4646 5.448225 GCAACAGTAATCACAGATGACATGG 60.448 44.000 0.00 0.00 37.79 3.66
3284 4647 5.353400 AGCAACAGTAATCACAGATGACATG 59.647 40.000 0.00 0.00 37.79 3.21
3285 4648 5.494724 AGCAACAGTAATCACAGATGACAT 58.505 37.500 0.00 0.00 37.79 3.06
3286 4649 4.898320 AGCAACAGTAATCACAGATGACA 58.102 39.130 0.00 0.00 37.79 3.58
3287 4650 6.968131 TTAGCAACAGTAATCACAGATGAC 57.032 37.500 0.00 0.00 37.79 3.06
3288 4651 7.161404 AGTTTAGCAACAGTAATCACAGATGA 58.839 34.615 0.00 0.00 35.72 2.92
3289 4652 7.369803 AGTTTAGCAACAGTAATCACAGATG 57.630 36.000 0.00 0.00 35.05 2.90
3290 4653 7.986085 AAGTTTAGCAACAGTAATCACAGAT 57.014 32.000 0.00 0.00 35.05 2.90
3291 4654 7.307160 CGAAAGTTTAGCAACAGTAATCACAGA 60.307 37.037 0.00 0.00 35.05 3.41
3292 4655 6.792250 CGAAAGTTTAGCAACAGTAATCACAG 59.208 38.462 0.00 0.00 35.05 3.66
3293 4656 6.259167 ACGAAAGTTTAGCAACAGTAATCACA 59.741 34.615 0.00 0.00 46.40 3.58
3294 4657 6.656003 ACGAAAGTTTAGCAACAGTAATCAC 58.344 36.000 0.00 0.00 46.40 3.06
3295 4658 6.854496 ACGAAAGTTTAGCAACAGTAATCA 57.146 33.333 0.00 0.00 46.40 2.57
3312 4675 5.981174 TGAATCGGTTTGAACTAACGAAAG 58.019 37.500 0.00 0.00 0.00 2.62
3313 4676 5.987777 TGAATCGGTTTGAACTAACGAAA 57.012 34.783 0.00 0.00 0.00 3.46
3314 4677 5.987777 TTGAATCGGTTTGAACTAACGAA 57.012 34.783 0.00 0.00 0.00 3.85
3315 4678 5.987777 TTTGAATCGGTTTGAACTAACGA 57.012 34.783 0.00 0.00 0.00 3.85
3337 4700 8.654230 AAAAACTTTTGTTGTTTGCCATTTTT 57.346 23.077 0.00 0.00 42.67 1.94
3338 4701 9.750125 TTAAAAACTTTTGTTGTTTGCCATTTT 57.250 22.222 0.00 0.00 42.67 1.82
3339 4702 9.750125 TTTAAAAACTTTTGTTGTTTGCCATTT 57.250 22.222 0.00 0.00 42.67 2.32
3340 4703 9.750125 TTTTAAAAACTTTTGTTGTTTGCCATT 57.250 22.222 0.00 0.00 42.67 3.16
3341 4704 9.404348 CTTTTAAAAACTTTTGTTGTTTGCCAT 57.596 25.926 1.66 0.00 42.67 4.40
3342 4705 8.406297 ACTTTTAAAAACTTTTGTTGTTTGCCA 58.594 25.926 1.66 0.00 42.67 4.92
3343 4706 8.789881 ACTTTTAAAAACTTTTGTTGTTTGCC 57.210 26.923 1.66 0.00 42.67 4.52
3360 4723 9.813080 CCGAACATTTTTGTTTCAACTTTTAAA 57.187 25.926 0.00 0.00 31.35 1.52
3361 4724 8.989980 ACCGAACATTTTTGTTTCAACTTTTAA 58.010 25.926 0.00 0.00 31.35 1.52
3362 4725 8.535690 ACCGAACATTTTTGTTTCAACTTTTA 57.464 26.923 0.00 0.00 31.35 1.52
3363 4726 7.428282 ACCGAACATTTTTGTTTCAACTTTT 57.572 28.000 0.00 0.00 31.35 2.27
3364 4727 7.428282 AACCGAACATTTTTGTTTCAACTTT 57.572 28.000 0.00 0.00 31.35 2.66
3365 4728 7.815549 ACTAACCGAACATTTTTGTTTCAACTT 59.184 29.630 0.00 0.00 31.35 2.66
3366 4729 7.274686 CACTAACCGAACATTTTTGTTTCAACT 59.725 33.333 0.00 0.00 31.35 3.16
3367 4730 7.387945 CACTAACCGAACATTTTTGTTTCAAC 58.612 34.615 0.00 0.00 31.35 3.18
3368 4731 6.035112 GCACTAACCGAACATTTTTGTTTCAA 59.965 34.615 0.00 0.00 31.35 2.69
3369 4732 5.517054 GCACTAACCGAACATTTTTGTTTCA 59.483 36.000 0.00 0.00 31.35 2.69
3370 4733 5.958428 GCACTAACCGAACATTTTTGTTTC 58.042 37.500 0.00 0.00 31.35 2.78
3371 4734 5.959652 GCACTAACCGAACATTTTTGTTT 57.040 34.783 0.00 0.00 31.35 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.