Multiple sequence alignment - TraesCS4A01G238300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G238300 chr4A 100.000 4430 0 0 1 4430 547304249 547299820 0.000000e+00 8181.0
1 TraesCS4A01G238300 chr4A 88.479 894 58 23 4 871 698560089 698559215 0.000000e+00 1038.0
2 TraesCS4A01G238300 chr4B 86.087 1610 149 40 1855 3435 73266197 73267760 0.000000e+00 1663.0
3 TraesCS4A01G238300 chr4B 85.714 483 36 7 1213 1695 73265480 73265929 3.100000e-131 479.0
4 TraesCS4A01G238300 chr4B 88.393 224 9 3 907 1129 73264895 73265102 2.050000e-63 254.0
5 TraesCS4A01G238300 chr4D 88.176 1387 113 23 2278 3645 49785822 49787176 0.000000e+00 1605.0
6 TraesCS4A01G238300 chr4D 85.366 984 60 25 913 1860 49784468 49785403 0.000000e+00 942.0
7 TraesCS4A01G238300 chr4D 86.577 298 24 8 4043 4327 49787475 49787769 9.250000e-82 315.0
8 TraesCS4A01G238300 chr4D 88.325 197 16 4 1855 2048 49785433 49785625 3.450000e-56 230.0
9 TraesCS4A01G238300 chr4D 92.000 50 4 0 2226 2275 49785750 49785799 2.210000e-08 71.3
10 TraesCS4A01G238300 chr1B 89.468 883 69 17 3 867 44063757 44064633 0.000000e+00 1094.0
11 TraesCS4A01G238300 chr5B 87.694 902 71 11 1 866 432707036 432706139 0.000000e+00 1014.0
12 TraesCS4A01G238300 chr7B 86.277 889 66 20 1 866 79102630 79103485 0.000000e+00 915.0
13 TraesCS4A01G238300 chr7D 85.189 898 86 29 1 866 244144153 244143271 0.000000e+00 878.0
14 TraesCS4A01G238300 chr7D 93.082 159 11 0 3838 3996 219849068 219848910 2.660000e-57 233.0
15 TraesCS4A01G238300 chr7D 91.398 93 7 1 774 866 53730934 53730843 4.650000e-25 126.0
16 TraesCS4A01G238300 chr6D 82.778 900 101 29 1 866 442155239 442156118 0.000000e+00 754.0
17 TraesCS4A01G238300 chr6D 94.545 165 8 1 3836 3999 452070848 452070684 2.050000e-63 254.0
18 TraesCS4A01G238300 chr6D 94.012 167 9 1 3836 4001 462398546 462398380 7.360000e-63 252.0
19 TraesCS4A01G238300 chr2B 81.910 890 101 31 1 867 19145569 19146421 0.000000e+00 697.0
20 TraesCS4A01G238300 chr2B 93.548 155 10 0 3839 3993 310807549 310807395 9.580000e-57 231.0
21 TraesCS4A01G238300 chr3D 94.937 158 8 0 3838 3995 177014241 177014084 9.510000e-62 248.0
22 TraesCS4A01G238300 chr3D 94.375 160 9 0 3836 3995 90830266 90830425 3.420000e-61 246.0
23 TraesCS4A01G238300 chr2A 93.413 167 10 1 3838 4003 728086128 728085962 3.420000e-61 246.0
24 TraesCS4A01G238300 chr2A 83.824 68 10 1 4075 4142 729499583 729499517 3.700000e-06 63.9
25 TraesCS4A01G238300 chr1D 93.252 163 10 1 3836 3997 356881795 356881957 5.730000e-59 239.0
26 TraesCS4A01G238300 chr6A 93.671 158 10 0 3838 3995 63107446 63107603 2.060000e-58 237.0
27 TraesCS4A01G238300 chr3A 95.726 117 0 1 992 1103 574339846 574339730 2.720000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G238300 chr4A 547299820 547304249 4429 True 8181.000000 8181 100.000000 1 4430 1 chr4A.!!$R1 4429
1 TraesCS4A01G238300 chr4A 698559215 698560089 874 True 1038.000000 1038 88.479000 4 871 1 chr4A.!!$R2 867
2 TraesCS4A01G238300 chr4B 73264895 73267760 2865 False 798.666667 1663 86.731333 907 3435 3 chr4B.!!$F1 2528
3 TraesCS4A01G238300 chr4D 49784468 49787769 3301 False 632.660000 1605 88.088800 913 4327 5 chr4D.!!$F1 3414
4 TraesCS4A01G238300 chr1B 44063757 44064633 876 False 1094.000000 1094 89.468000 3 867 1 chr1B.!!$F1 864
5 TraesCS4A01G238300 chr5B 432706139 432707036 897 True 1014.000000 1014 87.694000 1 866 1 chr5B.!!$R1 865
6 TraesCS4A01G238300 chr7B 79102630 79103485 855 False 915.000000 915 86.277000 1 866 1 chr7B.!!$F1 865
7 TraesCS4A01G238300 chr7D 244143271 244144153 882 True 878.000000 878 85.189000 1 866 1 chr7D.!!$R3 865
8 TraesCS4A01G238300 chr6D 442155239 442156118 879 False 754.000000 754 82.778000 1 866 1 chr6D.!!$F1 865
9 TraesCS4A01G238300 chr2B 19145569 19146421 852 False 697.000000 697 81.910000 1 867 1 chr2B.!!$F1 866

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
891 960 0.035630 AGTGTCCTGATCCAAGCAGC 60.036 55.0 0.00 0.0 32.06 5.25 F
1079 1149 0.040246 GACCTTCGATCCGATCCGAC 60.040 60.0 2.69 0.0 35.23 4.79 F
1484 1862 0.109532 GCTAGAGGGAGGGATTTGCC 59.890 60.0 0.00 0.0 0.00 4.52 F
1515 1893 0.178995 TGTTGCCTGAATGCCTGTGA 60.179 50.0 0.00 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2459 3141 0.253044 CATCTTTGGCCTCCCTTCGA 59.747 55.0 3.32 0.0 0.0 3.71 R
2534 3216 0.872388 GTTTGGACAGGGTTAGCACG 59.128 55.0 0.00 0.0 0.0 5.34 R
3145 3842 0.179150 CTGCTCAGCCACTACGACTC 60.179 60.0 0.00 0.0 0.0 3.36 R
3489 4190 0.179073 CCGAACGAGATGCTGGGAAT 60.179 55.0 0.00 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 65 7.066284 CGGGAACATTTTCTGAATCTGTAGAAT 59.934 37.037 5.98 0.00 33.34 2.40
93 96 6.970043 TGAGAACGTACACAATTTTTGGAAAG 59.030 34.615 0.00 0.00 34.12 2.62
108 111 8.614469 TTTTTGGAAAGATGAACACTTTTTGT 57.386 26.923 0.00 0.00 41.74 2.83
153 165 9.447157 TTTTCTGAAAACTGAAACATTTTCCAT 57.553 25.926 11.33 0.00 41.90 3.41
163 177 8.526147 ACTGAAACATTTTCCATATTCCAGAAG 58.474 33.333 0.00 0.00 0.00 2.85
186 200 9.763465 GAAGAAATTTTGGATATGCAAACATTG 57.237 29.630 20.51 0.00 37.74 2.82
234 253 6.992715 TCAAACACCTGAAAGTTTTTGGAAAA 59.007 30.769 12.79 0.00 37.78 2.29
428 454 9.018582 TCAAACTCCCAAACAAAATTTGAAAAT 57.981 25.926 13.19 0.00 33.06 1.82
565 608 9.389755 TCATAAAGAAAAGAAAACAAAAAGGGG 57.610 29.630 0.00 0.00 0.00 4.79
622 671 8.996651 AGAATAGAAACAGAAAAGGAAAAGGA 57.003 30.769 0.00 0.00 0.00 3.36
676 741 1.029681 AAACCAGTCCAAGAAACGGC 58.970 50.000 0.00 0.00 0.00 5.68
684 749 1.351017 TCCAAGAAACGGCTCAGGAAT 59.649 47.619 0.00 0.00 0.00 3.01
717 782 4.345547 GGTTCCCAAAACCATTAGAAACCA 59.654 41.667 2.12 0.00 40.03 3.67
722 787 2.231716 AACCATTAGAAACCAGGGCC 57.768 50.000 0.00 0.00 0.00 5.80
806 874 0.320160 GCCCAGTCGTTCGGTTAGTT 60.320 55.000 0.00 0.00 0.00 2.24
812 880 4.336433 CCAGTCGTTCGGTTAGTTATCCTA 59.664 45.833 0.00 0.00 0.00 2.94
817 885 4.049869 GTTCGGTTAGTTATCCTAGCTGC 58.950 47.826 0.00 0.00 34.25 5.25
837 906 0.782384 GTGCGTTACCTCGACTGTTG 59.218 55.000 0.00 0.00 0.00 3.33
867 936 5.012328 AGAGCGTCGAATAGGAAATTCTT 57.988 39.130 0.00 0.00 0.00 2.52
868 937 6.039493 AGAGAGCGTCGAATAGGAAATTCTTA 59.961 38.462 0.00 0.00 0.00 2.10
869 938 5.978322 AGAGCGTCGAATAGGAAATTCTTAC 59.022 40.000 0.00 0.00 0.00 2.34
870 939 5.657474 AGCGTCGAATAGGAAATTCTTACA 58.343 37.500 0.00 0.00 0.00 2.41
871 940 6.281405 AGCGTCGAATAGGAAATTCTTACAT 58.719 36.000 0.00 0.00 0.00 2.29
872 941 7.431249 AGCGTCGAATAGGAAATTCTTACATA 58.569 34.615 0.00 0.00 0.00 2.29
873 942 7.595502 AGCGTCGAATAGGAAATTCTTACATAG 59.404 37.037 0.00 0.00 0.00 2.23
874 943 7.381678 GCGTCGAATAGGAAATTCTTACATAGT 59.618 37.037 0.00 0.00 0.00 2.12
875 944 8.691727 CGTCGAATAGGAAATTCTTACATAGTG 58.308 37.037 0.00 0.00 0.00 2.74
876 945 9.530633 GTCGAATAGGAAATTCTTACATAGTGT 57.469 33.333 0.00 0.00 0.00 3.55
877 946 9.745880 TCGAATAGGAAATTCTTACATAGTGTC 57.254 33.333 0.00 0.00 0.00 3.67
878 947 8.979574 CGAATAGGAAATTCTTACATAGTGTCC 58.020 37.037 0.00 0.00 0.00 4.02
880 949 9.838339 AATAGGAAATTCTTACATAGTGTCCTG 57.162 33.333 0.00 0.00 0.00 3.86
881 950 7.496346 AGGAAATTCTTACATAGTGTCCTGA 57.504 36.000 0.00 0.00 0.00 3.86
882 951 8.095452 AGGAAATTCTTACATAGTGTCCTGAT 57.905 34.615 0.00 0.00 0.00 2.90
883 952 8.207545 AGGAAATTCTTACATAGTGTCCTGATC 58.792 37.037 0.00 0.00 0.00 2.92
884 953 7.442666 GGAAATTCTTACATAGTGTCCTGATCC 59.557 40.741 0.00 0.00 0.00 3.36
885 954 7.437713 AATTCTTACATAGTGTCCTGATCCA 57.562 36.000 0.00 0.00 0.00 3.41
886 955 6.867519 TTCTTACATAGTGTCCTGATCCAA 57.132 37.500 0.00 0.00 0.00 3.53
887 956 6.471233 TCTTACATAGTGTCCTGATCCAAG 57.529 41.667 0.00 0.00 0.00 3.61
888 957 3.550437 ACATAGTGTCCTGATCCAAGC 57.450 47.619 0.00 0.00 0.00 4.01
889 958 2.840038 ACATAGTGTCCTGATCCAAGCA 59.160 45.455 0.00 0.00 0.00 3.91
890 959 3.118482 ACATAGTGTCCTGATCCAAGCAG 60.118 47.826 0.00 0.00 0.00 4.24
891 960 0.035630 AGTGTCCTGATCCAAGCAGC 60.036 55.000 0.00 0.00 32.06 5.25
892 961 0.321919 GTGTCCTGATCCAAGCAGCA 60.322 55.000 0.00 0.00 32.06 4.41
893 962 0.401356 TGTCCTGATCCAAGCAGCAA 59.599 50.000 0.00 0.00 32.06 3.91
894 963 1.005097 TGTCCTGATCCAAGCAGCAAT 59.995 47.619 0.00 0.00 32.06 3.56
895 964 2.097825 GTCCTGATCCAAGCAGCAATT 58.902 47.619 0.00 0.00 32.06 2.32
896 965 2.098770 GTCCTGATCCAAGCAGCAATTC 59.901 50.000 0.00 0.00 32.06 2.17
897 966 1.407979 CCTGATCCAAGCAGCAATTCC 59.592 52.381 0.00 0.00 32.06 3.01
898 967 2.097036 CTGATCCAAGCAGCAATTCCA 58.903 47.619 0.00 0.00 0.00 3.53
899 968 2.494471 CTGATCCAAGCAGCAATTCCAA 59.506 45.455 0.00 0.00 0.00 3.53
900 969 2.898612 TGATCCAAGCAGCAATTCCAAA 59.101 40.909 0.00 0.00 0.00 3.28
901 970 2.818130 TCCAAGCAGCAATTCCAAAC 57.182 45.000 0.00 0.00 0.00 2.93
902 971 1.344114 TCCAAGCAGCAATTCCAAACC 59.656 47.619 0.00 0.00 0.00 3.27
903 972 1.070445 CCAAGCAGCAATTCCAAACCA 59.930 47.619 0.00 0.00 0.00 3.67
904 973 2.409975 CAAGCAGCAATTCCAAACCAG 58.590 47.619 0.00 0.00 0.00 4.00
905 974 1.708341 AGCAGCAATTCCAAACCAGT 58.292 45.000 0.00 0.00 0.00 4.00
906 975 2.041701 AGCAGCAATTCCAAACCAGTT 58.958 42.857 0.00 0.00 0.00 3.16
907 976 2.435437 AGCAGCAATTCCAAACCAGTTT 59.565 40.909 0.00 0.00 0.00 2.66
908 977 3.640967 AGCAGCAATTCCAAACCAGTTTA 59.359 39.130 0.00 0.00 0.00 2.01
909 978 4.284234 AGCAGCAATTCCAAACCAGTTTAT 59.716 37.500 0.00 0.00 0.00 1.40
910 979 4.389687 GCAGCAATTCCAAACCAGTTTATG 59.610 41.667 0.00 0.00 0.00 1.90
947 1017 2.555199 GCCAGATAGTACCAGCAACAG 58.445 52.381 0.00 0.00 0.00 3.16
1028 1098 3.866883 AAAGAAGAAGCGAGAGGAGAG 57.133 47.619 0.00 0.00 0.00 3.20
1060 1130 1.142262 CCTAAACCCCCGTATTCCCAG 59.858 57.143 0.00 0.00 0.00 4.45
1079 1149 0.040246 GACCTTCGATCCGATCCGAC 60.040 60.000 2.69 0.00 35.23 4.79
1084 1154 2.549198 CGATCCGATCCGACCCGAA 61.549 63.158 2.69 0.00 0.00 4.30
1142 1212 0.687354 TCAAGAGCCTGTGGAACTCC 59.313 55.000 0.00 0.00 38.04 3.85
1226 1590 1.303155 GTGCTCTGCTCTGCCCTTT 60.303 57.895 0.00 0.00 0.00 3.11
1239 1603 3.132111 TCTGCCCTTTGTTTTCCTGTTTC 59.868 43.478 0.00 0.00 0.00 2.78
1242 1606 3.118408 GCCCTTTGTTTTCCTGTTTCCTT 60.118 43.478 0.00 0.00 0.00 3.36
1270 1634 0.537188 ATTGCGCTGGTAGCTGTAGT 59.463 50.000 9.73 0.00 39.60 2.73
1283 1647 6.183360 TGGTAGCTGTAGTTGTAATAGCTCTG 60.183 42.308 0.00 0.00 43.13 3.35
1293 1657 3.691118 TGTAATAGCTCTGCTGCTTTTGG 59.309 43.478 0.00 0.00 43.74 3.28
1296 1660 1.208614 GCTCTGCTGCTTTTGGTCG 59.791 57.895 0.00 0.00 0.00 4.79
1303 1667 4.445545 GCTTTTGGTCGGCGCGAG 62.446 66.667 12.10 2.11 36.23 5.03
1309 1673 4.194720 GGTCGGCGCGAGTGAGAT 62.195 66.667 12.10 0.00 36.23 2.75
1344 1708 2.131183 GTAGGCGATCTAGCTGCTTTG 58.869 52.381 7.79 1.36 37.29 2.77
1345 1709 0.179062 AGGCGATCTAGCTGCTTTGG 60.179 55.000 7.79 0.00 37.29 3.28
1351 1715 0.673644 TCTAGCTGCTTTGGTTCGGC 60.674 55.000 7.79 0.00 34.91 5.54
1370 1734 1.226018 GCGATTACGTTGCTGGTGC 60.226 57.895 0.00 0.00 41.98 5.01
1389 1753 7.062749 TGGTGCTTAATCTTAGATCCGTATT 57.937 36.000 0.00 0.00 0.00 1.89
1412 1790 1.597027 CTTTCCCCAGTTGACGCGT 60.597 57.895 13.85 13.85 0.00 6.01
1427 1805 1.194495 CGCGTATGGTTTCCTCGTAC 58.806 55.000 0.00 0.00 0.00 3.67
1475 1853 3.571590 AGGAATAGTGTGCTAGAGGGAG 58.428 50.000 0.00 0.00 0.00 4.30
1476 1854 2.630580 GGAATAGTGTGCTAGAGGGAGG 59.369 54.545 0.00 0.00 0.00 4.30
1484 1862 0.109532 GCTAGAGGGAGGGATTTGCC 59.890 60.000 0.00 0.00 0.00 4.52
1493 1871 0.679960 AGGGATTTGCCGTAACCAGC 60.680 55.000 0.00 0.00 37.63 4.85
1515 1893 0.178995 TGTTGCCTGAATGCCTGTGA 60.179 50.000 0.00 0.00 0.00 3.58
1518 1896 1.927487 TGCCTGAATGCCTGTGATTT 58.073 45.000 0.00 0.00 0.00 2.17
1574 1952 4.457466 GGTCCTGTAGAACAAGGAACAAA 58.543 43.478 1.86 0.00 34.99 2.83
1575 1953 5.070685 GGTCCTGTAGAACAAGGAACAAAT 58.929 41.667 1.86 0.00 34.99 2.32
1576 1954 5.535030 GGTCCTGTAGAACAAGGAACAAATT 59.465 40.000 1.86 0.00 34.99 1.82
1577 1955 6.040504 GGTCCTGTAGAACAAGGAACAAATTT 59.959 38.462 1.86 0.00 34.99 1.82
1578 1956 7.229907 GGTCCTGTAGAACAAGGAACAAATTTA 59.770 37.037 1.86 0.00 34.99 1.40
1620 1998 6.935167 TGATCTGCTACATGTAGAAGTTCAA 58.065 36.000 33.80 23.68 41.30 2.69
1663 2042 3.065925 GGTTGATGCAAATCTAGTGCTCC 59.934 47.826 5.52 0.00 42.69 4.70
1664 2043 3.920231 TGATGCAAATCTAGTGCTCCT 57.080 42.857 5.52 0.00 42.69 3.69
1665 2044 4.226427 TGATGCAAATCTAGTGCTCCTT 57.774 40.909 5.52 0.00 42.69 3.36
1669 2048 4.905429 TGCAAATCTAGTGCTCCTTTGTA 58.095 39.130 5.52 0.00 42.69 2.41
1686 2065 4.630894 TTGTACCTGCAAAAGAACACTG 57.369 40.909 0.00 0.00 0.00 3.66
1717 2302 9.093458 ACCATTAGGATGAATTTTTCAGTTTCT 57.907 29.630 0.00 0.00 39.92 2.52
1721 2306 6.685657 AGGATGAATTTTTCAGTTTCTCTGC 58.314 36.000 0.00 0.00 43.98 4.26
1749 2334 3.234234 ACTGGCAGGGGATATTCATTG 57.766 47.619 20.34 0.00 0.00 2.82
1750 2335 2.515429 ACTGGCAGGGGATATTCATTGT 59.485 45.455 20.34 0.00 0.00 2.71
1751 2336 3.052642 ACTGGCAGGGGATATTCATTGTT 60.053 43.478 20.34 0.00 0.00 2.83
1752 2337 3.565307 TGGCAGGGGATATTCATTGTTC 58.435 45.455 0.00 0.00 0.00 3.18
1753 2338 2.893489 GGCAGGGGATATTCATTGTTCC 59.107 50.000 0.00 0.00 0.00 3.62
1754 2339 3.437052 GGCAGGGGATATTCATTGTTCCT 60.437 47.826 0.00 0.00 0.00 3.36
1755 2340 4.202567 GGCAGGGGATATTCATTGTTCCTA 60.203 45.833 0.00 0.00 0.00 2.94
1756 2341 5.006386 GCAGGGGATATTCATTGTTCCTAG 58.994 45.833 0.00 0.00 0.00 3.02
1757 2342 5.564550 CAGGGGATATTCATTGTTCCTAGG 58.435 45.833 0.82 0.82 0.00 3.02
1794 2383 3.536956 TCACCGAATTACATGGTCTCC 57.463 47.619 0.00 0.00 32.48 3.71
1809 2401 6.613271 ACATGGTCTCCTCATCTACTTGTTAT 59.387 38.462 0.00 0.00 0.00 1.89
1913 2542 8.993121 TGTGAGAGAGAAACATAATTGTTCTTC 58.007 33.333 0.00 0.00 45.30 2.87
1978 2608 5.626142 TGCCTCTTACATTTGAAACCTACA 58.374 37.500 0.00 0.00 0.00 2.74
2042 2674 4.037923 GCCTTCTTGACAGTGGAATTTGAA 59.962 41.667 0.00 0.00 0.00 2.69
2057 2690 6.953520 TGGAATTTGAACTTTGGTATGAGGAT 59.046 34.615 0.00 0.00 0.00 3.24
2111 2744 1.271597 GGATGTGCCACCTCTTCAAGT 60.272 52.381 0.13 0.00 36.34 3.16
2124 2767 5.297029 ACCTCTTCAAGTCTGTTTTAGCAAC 59.703 40.000 0.00 0.00 0.00 4.17
2150 2793 4.636249 ACTTACTTCAGAGCAGTTTCAGG 58.364 43.478 0.00 0.00 0.00 3.86
2200 2847 6.119240 TCTCATTTGAAGAGAGACAATGGT 57.881 37.500 0.00 0.00 37.22 3.55
2201 2848 7.244886 TCTCATTTGAAGAGAGACAATGGTA 57.755 36.000 0.00 0.00 37.22 3.25
2202 2849 7.855375 TCTCATTTGAAGAGAGACAATGGTAT 58.145 34.615 0.00 0.00 37.22 2.73
2205 2852 4.655762 TGAAGAGAGACAATGGTATCCG 57.344 45.455 0.00 0.00 35.87 4.18
2271 2933 1.072173 TGACCTTCACCACCATGTCAG 59.928 52.381 0.00 0.00 0.00 3.51
2273 2935 1.494721 ACCTTCACCACCATGTCAGTT 59.505 47.619 0.00 0.00 0.00 3.16
2274 2936 2.091885 ACCTTCACCACCATGTCAGTTT 60.092 45.455 0.00 0.00 0.00 2.66
2275 2937 3.137544 ACCTTCACCACCATGTCAGTTTA 59.862 43.478 0.00 0.00 0.00 2.01
2324 3004 2.034558 GCAACACCCACCATATGTATGC 59.965 50.000 1.24 0.00 32.40 3.14
2325 3005 3.286353 CAACACCCACCATATGTATGCA 58.714 45.455 1.24 0.00 32.40 3.96
2326 3006 2.930950 ACACCCACCATATGTATGCAC 58.069 47.619 1.24 0.00 32.40 4.57
2327 3007 1.872952 CACCCACCATATGTATGCACG 59.127 52.381 1.24 0.00 32.40 5.34
2328 3008 1.765904 ACCCACCATATGTATGCACGA 59.234 47.619 1.24 0.00 32.40 4.35
2329 3009 2.171659 ACCCACCATATGTATGCACGAA 59.828 45.455 1.24 0.00 32.40 3.85
2330 3010 2.548057 CCCACCATATGTATGCACGAAC 59.452 50.000 1.24 0.00 32.40 3.95
2331 3011 3.202097 CCACCATATGTATGCACGAACA 58.798 45.455 1.24 0.00 32.40 3.18
2332 3012 3.002246 CCACCATATGTATGCACGAACAC 59.998 47.826 1.24 0.00 32.40 3.32
2333 3013 3.871006 CACCATATGTATGCACGAACACT 59.129 43.478 1.24 0.00 32.40 3.55
2334 3014 3.871006 ACCATATGTATGCACGAACACTG 59.129 43.478 1.24 0.00 32.40 3.66
2335 3015 4.119136 CCATATGTATGCACGAACACTGA 58.881 43.478 1.24 0.00 32.40 3.41
2336 3016 4.570369 CCATATGTATGCACGAACACTGAA 59.430 41.667 1.24 0.00 32.40 3.02
2337 3017 5.277011 CCATATGTATGCACGAACACTGAAG 60.277 44.000 1.24 0.00 32.40 3.02
2338 3018 3.378911 TGTATGCACGAACACTGAAGA 57.621 42.857 0.00 0.00 0.00 2.87
2344 3024 2.354821 GCACGAACACTGAAGAAAAGGT 59.645 45.455 0.00 0.00 0.00 3.50
2390 3070 5.916883 GTCACAGACATTCCAAGAAAATGTG 59.083 40.000 6.24 0.00 45.02 3.21
2429 3110 1.668751 TCGGCAATATTTCAACTCCGC 59.331 47.619 0.00 0.00 35.78 5.54
2438 3119 7.305474 CAATATTTCAACTCCGCAACTAAACT 58.695 34.615 0.00 0.00 0.00 2.66
2441 3122 5.662211 TTCAACTCCGCAACTAAACTAAC 57.338 39.130 0.00 0.00 0.00 2.34
2461 3143 9.698309 AACTAACATATAGGAACTCATCATTCG 57.302 33.333 0.00 0.00 41.75 3.34
2473 3155 0.918983 ATCATTCGAAGGGAGGCCAA 59.081 50.000 10.29 0.00 0.00 4.52
2481 3163 2.158755 CGAAGGGAGGCCAAAGATGTAT 60.159 50.000 5.01 0.00 0.00 2.29
2534 3216 6.954944 TGTGTTGTACTAGTTGCTTTGAATC 58.045 36.000 0.00 0.00 0.00 2.52
2536 3218 5.756347 TGTTGTACTAGTTGCTTTGAATCGT 59.244 36.000 0.00 0.00 0.00 3.73
2556 3238 1.213182 TGCTAACCCTGTCCAAACACA 59.787 47.619 0.00 0.00 0.00 3.72
2585 3273 3.788937 AGTACTGTGTTGCGTTAGTGTT 58.211 40.909 0.00 0.00 0.00 3.32
2618 3308 9.916397 GTGATGGAAATTAATAGTCTTGTAACG 57.084 33.333 0.00 0.00 0.00 3.18
2661 3356 6.866770 GGGTTAGCTGGAGTGTTTTTAAATTC 59.133 38.462 0.00 0.00 0.00 2.17
2695 3390 5.188555 AGAGCAATCTGGAACTGATACTTGA 59.811 40.000 0.00 0.00 46.23 3.02
2736 3431 4.415596 TGGGTGATTAGCTCAAATTTGGT 58.584 39.130 17.90 6.16 35.07 3.67
2740 3435 6.330278 GGTGATTAGCTCAAATTTGGTAACC 58.670 40.000 17.90 10.43 35.07 2.85
2776 3471 8.880750 CATATGCTGTGTATCTGGATTGATTAG 58.119 37.037 0.00 0.00 0.00 1.73
2780 3475 8.432013 TGCTGTGTATCTGGATTGATTAGTTAT 58.568 33.333 0.00 0.00 0.00 1.89
2849 3544 0.529378 GCTGTCCTTTGGCCATTGAG 59.471 55.000 6.09 5.19 0.00 3.02
2868 3563 7.170320 CCATTGAGACTTTGAACTGAAATTTGG 59.830 37.037 0.00 0.00 0.00 3.28
2872 3567 7.773224 TGAGACTTTGAACTGAAATTTGGTCTA 59.227 33.333 0.00 0.00 31.71 2.59
2875 3570 8.519799 ACTTTGAACTGAAATTTGGTCTAGAA 57.480 30.769 0.00 0.00 0.00 2.10
2898 3593 3.760684 CAGAGCAGAACTAAAATGCCCTT 59.239 43.478 0.00 0.00 40.89 3.95
2946 3643 3.146066 TGTTAGTGGAGCATCAAACACC 58.854 45.455 0.00 0.00 36.25 4.16
2947 3644 2.488153 GTTAGTGGAGCATCAAACACCC 59.512 50.000 0.00 0.00 36.25 4.61
2948 3645 0.606401 AGTGGAGCATCAAACACCCG 60.606 55.000 0.00 0.00 36.25 5.28
2965 3662 2.028567 ACCCGTTACATGGCCAAATTTG 60.029 45.455 10.96 11.40 0.00 2.32
2967 3664 3.249917 CCGTTACATGGCCAAATTTGAC 58.750 45.455 19.86 7.94 0.00 3.18
3002 3699 9.832445 GAATCTATGTTTATTAGTGACCTTCCA 57.168 33.333 0.00 0.00 0.00 3.53
3005 3702 8.141909 TCTATGTTTATTAGTGACCTTCCATCG 58.858 37.037 0.00 0.00 0.00 3.84
3145 3842 4.881850 GGTGACATGATGGTAGTTTAAGGG 59.118 45.833 0.00 0.00 0.00 3.95
3146 3843 5.338871 GGTGACATGATGGTAGTTTAAGGGA 60.339 44.000 0.00 0.00 0.00 4.20
3149 3846 5.990668 ACATGATGGTAGTTTAAGGGAGTC 58.009 41.667 0.00 0.00 0.00 3.36
3227 3924 8.537728 TTATGATCAGGCTTGTGGAATATTTT 57.462 30.769 0.09 0.00 0.00 1.82
3256 3953 4.887655 AGACTTGTGGGTTTCTTGTTAAGG 59.112 41.667 0.00 0.00 0.00 2.69
3284 3981 0.678048 GAAGCATTTCTCGGCAGGGT 60.678 55.000 0.00 0.00 0.00 4.34
3294 3991 2.304761 TCTCGGCAGGGTTATTTGACTT 59.695 45.455 0.00 0.00 0.00 3.01
3308 4005 9.020813 GGTTATTTGACTTGTTCTTTTTGAGTC 57.979 33.333 0.00 0.00 37.75 3.36
3360 4060 1.604604 TGTCCAGTTTGCTGTTAGGC 58.395 50.000 0.00 0.00 41.02 3.93
3437 4138 4.155826 TGGAACGCTTTGATTCTGTTATGG 59.844 41.667 0.00 0.00 0.00 2.74
3438 4139 4.438744 GGAACGCTTTGATTCTGTTATGGG 60.439 45.833 0.00 0.00 0.00 4.00
3455 4156 1.272425 TGGGTGTGGCTAAAGAATGGG 60.272 52.381 0.00 0.00 0.00 4.00
3456 4157 0.817654 GGTGTGGCTAAAGAATGGGC 59.182 55.000 0.00 0.00 0.00 5.36
3468 4169 2.519013 AGAATGGGCAAGTTGAGGTTC 58.481 47.619 7.16 5.02 0.00 3.62
3486 4187 7.695055 TGAGGTTCCCTGAACTAAAATCATAA 58.305 34.615 6.89 0.00 41.70 1.90
3487 4188 8.167392 TGAGGTTCCCTGAACTAAAATCATAAA 58.833 33.333 6.89 0.00 41.70 1.40
3488 4189 9.190317 GAGGTTCCCTGAACTAAAATCATAAAT 57.810 33.333 6.89 0.00 41.70 1.40
3543 4244 4.038642 ACGCAATCCCAACAACTAAAACAT 59.961 37.500 0.00 0.00 0.00 2.71
3571 4272 7.434307 GGCATTATCATCAGAACAAAATGACTG 59.566 37.037 0.00 0.00 32.58 3.51
3584 4285 7.878477 ACAAAATGACTGAATATGCAACTTG 57.122 32.000 0.00 0.00 0.00 3.16
3597 4298 9.807649 GAATATGCAACTTGAAACCAAGATTAT 57.192 29.630 11.60 4.13 42.71 1.28
3602 4303 8.825745 TGCAACTTGAAACCAAGATTATTTTTC 58.174 29.630 11.60 0.00 42.71 2.29
3616 4317 7.550712 AGATTATTTTTCTGAAATGGCAGGAC 58.449 34.615 3.31 0.00 36.55 3.85
3623 4324 4.579869 TCTGAAATGGCAGGACTTCTTAC 58.420 43.478 0.00 0.00 36.55 2.34
3645 4346 3.506067 CGAAGGGAATAGTTGCTTGGTTT 59.494 43.478 0.00 0.00 0.00 3.27
3646 4347 4.022329 CGAAGGGAATAGTTGCTTGGTTTT 60.022 41.667 0.00 0.00 0.00 2.43
3673 4374 4.747540 TGAAATCAACCGACATTGAGTG 57.252 40.909 0.00 0.00 41.76 3.51
3674 4375 4.133820 TGAAATCAACCGACATTGAGTGT 58.866 39.130 0.00 0.00 45.83 3.55
3675 4376 5.301555 TGAAATCAACCGACATTGAGTGTA 58.698 37.500 0.00 0.00 42.36 2.90
3676 4377 5.937540 TGAAATCAACCGACATTGAGTGTAT 59.062 36.000 0.00 0.00 42.36 2.29
3677 4378 7.100409 TGAAATCAACCGACATTGAGTGTATA 58.900 34.615 0.00 0.00 42.36 1.47
3683 4407 4.081642 ACCGACATTGAGTGTATAGTTGCT 60.082 41.667 0.00 0.00 42.36 3.91
3686 4410 5.220472 CGACATTGAGTGTATAGTTGCTTGG 60.220 44.000 0.00 0.00 42.36 3.61
3694 4418 9.727859 TGAGTGTATAGTTGCTTGGTTAATTAA 57.272 29.630 0.00 0.00 0.00 1.40
3696 4420 9.174166 AGTGTATAGTTGCTTGGTTAATTAAGG 57.826 33.333 0.00 0.00 0.00 2.69
3697 4421 9.169592 GTGTATAGTTGCTTGGTTAATTAAGGA 57.830 33.333 0.00 0.00 0.00 3.36
3698 4422 9.742144 TGTATAGTTGCTTGGTTAATTAAGGAA 57.258 29.630 0.00 5.06 32.86 3.36
3701 4425 6.455647 AGTTGCTTGGTTAATTAAGGAAAGC 58.544 36.000 21.51 21.51 36.28 3.51
3702 4426 5.400066 TGCTTGGTTAATTAAGGAAAGCC 57.600 39.130 23.49 12.36 38.17 4.35
3713 4437 2.640316 AGGAAAGCCGAGTGAAAACT 57.360 45.000 0.00 0.00 39.96 2.66
3720 4444 4.273148 AGCCGAGTGAAAACTAGATTGT 57.727 40.909 0.00 0.00 0.00 2.71
3723 4447 5.185249 AGCCGAGTGAAAACTAGATTGTCTA 59.815 40.000 0.00 0.00 0.00 2.59
3751 4475 7.739498 AATTATTAACACATAAGGTAGCCCG 57.261 36.000 0.00 0.00 35.12 6.13
3755 4479 2.185387 ACACATAAGGTAGCCCGACTT 58.815 47.619 0.00 0.00 35.12 3.01
3756 4480 2.570302 ACACATAAGGTAGCCCGACTTT 59.430 45.455 0.00 0.00 35.12 2.66
3757 4481 2.936498 CACATAAGGTAGCCCGACTTTG 59.064 50.000 0.00 0.00 35.12 2.77
3759 4483 3.454812 ACATAAGGTAGCCCGACTTTGAT 59.545 43.478 0.00 0.00 35.12 2.57
3762 4486 1.482593 AGGTAGCCCGACTTTGATGAG 59.517 52.381 0.00 0.00 35.12 2.90
3763 4487 1.473434 GGTAGCCCGACTTTGATGAGG 60.473 57.143 0.00 0.00 0.00 3.86
3764 4488 1.207329 GTAGCCCGACTTTGATGAGGT 59.793 52.381 0.00 0.00 0.00 3.85
3766 4490 0.744771 GCCCGACTTTGATGAGGTCC 60.745 60.000 0.00 0.00 0.00 4.46
3767 4491 0.460284 CCCGACTTTGATGAGGTCCG 60.460 60.000 0.00 0.00 0.00 4.79
3769 4493 1.630148 CGACTTTGATGAGGTCCGAC 58.370 55.000 0.00 0.00 0.00 4.79
3770 4494 1.736032 CGACTTTGATGAGGTCCGACC 60.736 57.143 9.81 9.81 38.99 4.79
3771 4495 0.613777 ACTTTGATGAGGTCCGACCC 59.386 55.000 14.32 6.53 39.75 4.46
3772 4496 0.107654 CTTTGATGAGGTCCGACCCC 60.108 60.000 14.32 2.56 39.75 4.95
3773 4497 0.838554 TTTGATGAGGTCCGACCCCA 60.839 55.000 14.32 9.29 39.75 4.96
3774 4498 1.550130 TTGATGAGGTCCGACCCCAC 61.550 60.000 14.32 6.96 39.75 4.61
3775 4499 3.075005 ATGAGGTCCGACCCCACG 61.075 66.667 14.32 0.00 39.75 4.94
3787 4511 3.726517 CCCACGCAGGCGACTTTG 61.727 66.667 21.62 7.83 40.21 2.77
3790 4514 1.133253 CACGCAGGCGACTTTGATG 59.867 57.895 21.62 2.11 40.21 3.07
3791 4515 2.099062 CGCAGGCGACTTTGATGC 59.901 61.111 8.15 0.00 40.21 3.91
3792 4516 2.393768 CGCAGGCGACTTTGATGCT 61.394 57.895 8.15 0.00 40.21 3.79
3795 4563 2.042831 AGGCGACTTTGATGCTGCC 61.043 57.895 0.00 0.00 42.76 4.85
3804 4572 3.313750 GATGCTGCCATCGTCGAC 58.686 61.111 5.18 5.18 38.59 4.20
3811 4579 2.158959 GCCATCGTCGACTCAACCG 61.159 63.158 14.70 0.00 0.00 4.44
3833 4601 6.049149 CCGACATTGAGTGTATAACCAAGAT 58.951 40.000 0.00 0.00 42.36 2.40
3835 4603 7.709182 CCGACATTGAGTGTATAACCAAGATTA 59.291 37.037 0.00 0.00 42.36 1.75
3836 4604 8.540492 CGACATTGAGTGTATAACCAAGATTAC 58.460 37.037 0.00 0.00 42.36 1.89
3837 4605 9.378551 GACATTGAGTGTATAACCAAGATTACA 57.621 33.333 0.00 0.00 42.36 2.41
3838 4606 9.383519 ACATTGAGTGTATAACCAAGATTACAG 57.616 33.333 0.00 0.00 39.91 2.74
3839 4607 9.599866 CATTGAGTGTATAACCAAGATTACAGA 57.400 33.333 0.00 0.00 0.00 3.41
3841 4609 8.589701 TGAGTGTATAACCAAGATTACAGAGA 57.410 34.615 0.00 0.00 0.00 3.10
3844 4612 7.982354 AGTGTATAACCAAGATTACAGAGAAGC 59.018 37.037 0.00 0.00 0.00 3.86
3845 4613 7.764443 GTGTATAACCAAGATTACAGAGAAGCA 59.236 37.037 0.00 0.00 0.00 3.91
3846 4614 8.318412 TGTATAACCAAGATTACAGAGAAGCAA 58.682 33.333 0.00 0.00 0.00 3.91
3847 4615 9.162764 GTATAACCAAGATTACAGAGAAGCAAA 57.837 33.333 0.00 0.00 0.00 3.68
3848 4616 8.814038 ATAACCAAGATTACAGAGAAGCAAAT 57.186 30.769 0.00 0.00 0.00 2.32
3849 4617 9.905713 ATAACCAAGATTACAGAGAAGCAAATA 57.094 29.630 0.00 0.00 0.00 1.40
3850 4618 8.635765 AACCAAGATTACAGAGAAGCAAATAA 57.364 30.769 0.00 0.00 0.00 1.40
3851 4619 8.635765 ACCAAGATTACAGAGAAGCAAATAAA 57.364 30.769 0.00 0.00 0.00 1.40
3852 4620 8.734386 ACCAAGATTACAGAGAAGCAAATAAAG 58.266 33.333 0.00 0.00 0.00 1.85
3853 4621 8.734386 CCAAGATTACAGAGAAGCAAATAAAGT 58.266 33.333 0.00 0.00 0.00 2.66
3856 4624 9.103861 AGATTACAGAGAAGCAAATAAAGTAGC 57.896 33.333 0.00 0.00 0.00 3.58
3857 4625 9.103861 GATTACAGAGAAGCAAATAAAGTAGCT 57.896 33.333 0.00 0.00 39.37 3.32
3858 4626 6.976636 ACAGAGAAGCAAATAAAGTAGCTC 57.023 37.500 0.00 0.00 36.07 4.09
3859 4627 6.467677 ACAGAGAAGCAAATAAAGTAGCTCA 58.532 36.000 0.00 0.00 36.07 4.26
3860 4628 6.370166 ACAGAGAAGCAAATAAAGTAGCTCAC 59.630 38.462 0.00 0.00 36.07 3.51
3861 4629 5.578727 AGAGAAGCAAATAAAGTAGCTCACG 59.421 40.000 0.00 0.00 36.07 4.35
3862 4630 5.479306 AGAAGCAAATAAAGTAGCTCACGA 58.521 37.500 0.00 0.00 36.07 4.35
3863 4631 5.578727 AGAAGCAAATAAAGTAGCTCACGAG 59.421 40.000 0.00 0.00 36.07 4.18
3864 4632 4.822026 AGCAAATAAAGTAGCTCACGAGT 58.178 39.130 0.00 0.00 30.05 4.18
3865 4633 5.238583 AGCAAATAAAGTAGCTCACGAGTT 58.761 37.500 0.00 0.00 30.05 3.01
3866 4634 5.701290 AGCAAATAAAGTAGCTCACGAGTTT 59.299 36.000 0.00 0.00 30.05 2.66
3867 4635 5.790495 GCAAATAAAGTAGCTCACGAGTTTG 59.210 40.000 0.00 0.00 0.00 2.93
3868 4636 5.532025 AATAAAGTAGCTCACGAGTTTGC 57.468 39.130 0.00 0.00 0.00 3.68
3869 4637 1.419374 AAGTAGCTCACGAGTTTGCG 58.581 50.000 0.00 0.00 37.29 4.85
3870 4638 0.596577 AGTAGCTCACGAGTTTGCGA 59.403 50.000 0.00 0.00 34.83 5.10
3871 4639 0.985549 GTAGCTCACGAGTTTGCGAG 59.014 55.000 0.00 0.00 34.83 5.03
3872 4640 0.596577 TAGCTCACGAGTTTGCGAGT 59.403 50.000 0.00 0.00 34.83 4.18
3873 4641 0.249489 AGCTCACGAGTTTGCGAGTT 60.249 50.000 0.00 0.00 34.83 3.01
3874 4642 0.582005 GCTCACGAGTTTGCGAGTTT 59.418 50.000 0.00 0.00 34.83 2.66
3875 4643 1.790623 GCTCACGAGTTTGCGAGTTTA 59.209 47.619 0.00 0.00 34.83 2.01
3876 4644 2.159960 GCTCACGAGTTTGCGAGTTTAG 60.160 50.000 0.00 0.00 34.83 1.85
3877 4645 1.790623 TCACGAGTTTGCGAGTTTAGC 59.209 47.619 0.00 0.00 34.83 3.09
3878 4646 1.792949 CACGAGTTTGCGAGTTTAGCT 59.207 47.619 0.00 0.00 35.28 3.32
3879 4647 2.984471 CACGAGTTTGCGAGTTTAGCTA 59.016 45.455 0.00 0.00 35.28 3.32
3880 4648 3.059570 CACGAGTTTGCGAGTTTAGCTAG 59.940 47.826 0.00 0.00 35.28 3.42
3881 4649 3.057736 ACGAGTTTGCGAGTTTAGCTAGA 60.058 43.478 0.00 0.00 35.28 2.43
3882 4650 4.106197 CGAGTTTGCGAGTTTAGCTAGAT 58.894 43.478 0.00 0.00 35.28 1.98
3883 4651 4.563184 CGAGTTTGCGAGTTTAGCTAGATT 59.437 41.667 0.00 0.00 35.28 2.40
3884 4652 5.062308 CGAGTTTGCGAGTTTAGCTAGATTT 59.938 40.000 0.00 0.00 35.28 2.17
3885 4653 6.401153 CGAGTTTGCGAGTTTAGCTAGATTTT 60.401 38.462 0.00 0.00 35.28 1.82
3886 4654 6.832804 AGTTTGCGAGTTTAGCTAGATTTTC 58.167 36.000 0.00 0.00 35.28 2.29
3887 4655 6.426937 AGTTTGCGAGTTTAGCTAGATTTTCA 59.573 34.615 0.00 0.00 35.28 2.69
3888 4656 6.985188 TTGCGAGTTTAGCTAGATTTTCAT 57.015 33.333 0.00 0.00 35.28 2.57
3889 4657 6.985188 TGCGAGTTTAGCTAGATTTTCATT 57.015 33.333 0.00 0.00 35.28 2.57
3890 4658 6.775088 TGCGAGTTTAGCTAGATTTTCATTG 58.225 36.000 0.00 0.00 35.28 2.82
3891 4659 6.593770 TGCGAGTTTAGCTAGATTTTCATTGA 59.406 34.615 0.00 0.00 35.28 2.57
3892 4660 7.280876 TGCGAGTTTAGCTAGATTTTCATTGAT 59.719 33.333 0.00 0.00 35.28 2.57
3893 4661 8.125448 GCGAGTTTAGCTAGATTTTCATTGATT 58.875 33.333 0.00 0.00 0.00 2.57
3894 4662 9.994432 CGAGTTTAGCTAGATTTTCATTGATTT 57.006 29.630 0.00 0.00 0.00 2.17
3909 4677 9.709495 TTTCATTGATTTCTAATTGGTTTGAGG 57.291 29.630 0.00 0.00 0.00 3.86
3910 4678 8.648698 TCATTGATTTCTAATTGGTTTGAGGA 57.351 30.769 0.00 0.00 0.00 3.71
3911 4679 9.087871 TCATTGATTTCTAATTGGTTTGAGGAA 57.912 29.630 0.00 0.00 0.00 3.36
3912 4680 9.143631 CATTGATTTCTAATTGGTTTGAGGAAC 57.856 33.333 0.00 0.00 37.53 3.62
3928 4696 9.325198 GTTTGAGGAACCTTTAAATGAAATTGT 57.675 29.630 0.00 0.00 31.83 2.71
3944 4712 9.643693 AATGAAATTGTAATGATCCTCACAAAC 57.356 29.630 7.06 4.23 33.44 2.93
3945 4713 7.304735 TGAAATTGTAATGATCCTCACAAACG 58.695 34.615 7.06 0.00 34.79 3.60
3946 4714 7.174080 TGAAATTGTAATGATCCTCACAAACGA 59.826 33.333 7.06 0.00 34.79 3.85
3947 4715 7.630242 AATTGTAATGATCCTCACAAACGAT 57.370 32.000 7.06 0.00 34.79 3.73
3948 4716 6.421377 TTGTAATGATCCTCACAAACGATG 57.579 37.500 0.00 0.00 0.00 3.84
3949 4717 5.487433 TGTAATGATCCTCACAAACGATGT 58.513 37.500 0.00 0.00 45.34 3.06
3950 4718 6.635755 TGTAATGATCCTCACAAACGATGTA 58.364 36.000 0.00 0.00 41.46 2.29
3951 4719 6.533723 TGTAATGATCCTCACAAACGATGTAC 59.466 38.462 0.00 0.00 41.46 2.90
3952 4720 4.801330 TGATCCTCACAAACGATGTACT 57.199 40.909 0.00 0.00 41.46 2.73
3953 4721 5.147330 TGATCCTCACAAACGATGTACTT 57.853 39.130 0.00 0.00 41.46 2.24
3954 4722 5.547465 TGATCCTCACAAACGATGTACTTT 58.453 37.500 0.00 0.00 41.46 2.66
3955 4723 5.995282 TGATCCTCACAAACGATGTACTTTT 59.005 36.000 0.00 0.00 41.46 2.27
3956 4724 6.485313 TGATCCTCACAAACGATGTACTTTTT 59.515 34.615 0.00 0.00 41.46 1.94
3957 4725 7.658167 TGATCCTCACAAACGATGTACTTTTTA 59.342 33.333 0.00 0.00 41.46 1.52
3958 4726 7.972832 TCCTCACAAACGATGTACTTTTTAT 57.027 32.000 0.00 0.00 41.46 1.40
3959 4727 8.025243 TCCTCACAAACGATGTACTTTTTATC 57.975 34.615 0.00 0.00 41.46 1.75
3960 4728 7.876068 TCCTCACAAACGATGTACTTTTTATCT 59.124 33.333 0.00 0.00 41.46 1.98
3961 4729 8.169268 CCTCACAAACGATGTACTTTTTATCTC 58.831 37.037 0.00 0.00 41.46 2.75
3962 4730 8.827177 TCACAAACGATGTACTTTTTATCTCT 57.173 30.769 0.00 0.00 41.46 3.10
3963 4731 9.917129 TCACAAACGATGTACTTTTTATCTCTA 57.083 29.630 0.00 0.00 41.46 2.43
3965 4733 9.924650 ACAAACGATGTACTTTTTATCTCTAGT 57.075 29.630 0.00 0.00 41.63 2.57
4029 4797 4.740934 GCGAAAGTATCATAACCCTGAGCT 60.741 45.833 0.00 0.00 0.00 4.09
4030 4798 4.985409 CGAAAGTATCATAACCCTGAGCTC 59.015 45.833 6.82 6.82 0.00 4.09
4031 4799 5.451937 CGAAAGTATCATAACCCTGAGCTCA 60.452 44.000 17.19 17.19 0.00 4.26
4032 4800 5.957771 AAGTATCATAACCCTGAGCTCAA 57.042 39.130 18.85 2.16 0.00 3.02
4033 4801 5.957771 AGTATCATAACCCTGAGCTCAAA 57.042 39.130 18.85 1.43 0.00 2.69
4034 4802 6.313519 AGTATCATAACCCTGAGCTCAAAA 57.686 37.500 18.85 1.80 0.00 2.44
4035 4803 6.721318 AGTATCATAACCCTGAGCTCAAAAA 58.279 36.000 18.85 2.17 0.00 1.94
4036 4804 6.825721 AGTATCATAACCCTGAGCTCAAAAAG 59.174 38.462 18.85 5.76 0.00 2.27
4037 4805 4.985538 TCATAACCCTGAGCTCAAAAAGT 58.014 39.130 18.85 9.61 0.00 2.66
4038 4806 6.121776 TCATAACCCTGAGCTCAAAAAGTA 57.878 37.500 18.85 7.02 0.00 2.24
4039 4807 6.539173 TCATAACCCTGAGCTCAAAAAGTAA 58.461 36.000 18.85 0.69 0.00 2.24
4040 4808 7.001674 TCATAACCCTGAGCTCAAAAAGTAAA 58.998 34.615 18.85 5.44 0.00 2.01
4041 4809 7.504238 TCATAACCCTGAGCTCAAAAAGTAAAA 59.496 33.333 18.85 3.25 0.00 1.52
4123 4892 8.579682 AATTTTCTAACTGTGTGCAAATTCTC 57.420 30.769 0.00 0.00 0.00 2.87
4125 4894 4.377021 TCTAACTGTGTGCAAATTCTCGT 58.623 39.130 0.00 0.00 0.00 4.18
4130 4899 2.226200 TGTGTGCAAATTCTCGTGATGG 59.774 45.455 0.00 0.00 0.00 3.51
4133 4902 3.567585 TGTGCAAATTCTCGTGATGGAAA 59.432 39.130 0.00 0.00 0.00 3.13
4142 4911 4.311606 TCTCGTGATGGAAAAACATTCGA 58.688 39.130 0.00 0.00 36.69 3.71
4146 4915 4.436050 CGTGATGGAAAAACATTCGAGGAG 60.436 45.833 0.00 0.00 33.62 3.69
4166 4936 6.600388 AGGAGGTTGGCAAAAATACAAAATT 58.400 32.000 0.00 0.00 0.00 1.82
4168 4938 8.214364 AGGAGGTTGGCAAAAATACAAAATTAA 58.786 29.630 0.00 0.00 0.00 1.40
4175 4945 9.383519 TGGCAAAAATACAAAATTAACACTTCA 57.616 25.926 0.00 0.00 0.00 3.02
4246 5016 3.209410 CCCAGAGCATCAGGAATGTAAC 58.791 50.000 0.00 0.00 46.05 2.50
4254 5024 6.421485 AGCATCAGGAATGTAACTTCTTCAT 58.579 36.000 0.00 0.00 37.71 2.57
4256 5026 6.459298 GCATCAGGAATGTAACTTCTTCATGG 60.459 42.308 0.00 0.00 37.71 3.66
4339 5119 8.688747 TTTTTGATTTTATGCATTCCCAAACT 57.311 26.923 3.54 0.00 0.00 2.66
4340 5120 7.903995 TTTGATTTTATGCATTCCCAAACTC 57.096 32.000 3.54 3.89 0.00 3.01
4341 5121 6.602410 TGATTTTATGCATTCCCAAACTCA 57.398 33.333 3.54 6.57 0.00 3.41
4342 5122 7.002250 TGATTTTATGCATTCCCAAACTCAA 57.998 32.000 3.54 0.00 0.00 3.02
4343 5123 7.448420 TGATTTTATGCATTCCCAAACTCAAA 58.552 30.769 3.54 0.00 0.00 2.69
4344 5124 8.102047 TGATTTTATGCATTCCCAAACTCAAAT 58.898 29.630 3.54 0.00 0.00 2.32
4345 5125 7.670009 TTTTATGCATTCCCAAACTCAAATG 57.330 32.000 3.54 0.00 33.31 2.32
4346 5126 4.895668 ATGCATTCCCAAACTCAAATGT 57.104 36.364 0.00 0.00 32.86 2.71
4347 5127 4.686191 TGCATTCCCAAACTCAAATGTT 57.314 36.364 0.00 0.00 32.86 2.71
4348 5128 4.378774 TGCATTCCCAAACTCAAATGTTG 58.621 39.130 0.00 0.00 32.86 3.33
4349 5129 3.187022 GCATTCCCAAACTCAAATGTTGC 59.813 43.478 0.00 0.00 32.86 4.17
4350 5130 4.634199 CATTCCCAAACTCAAATGTTGCT 58.366 39.130 0.00 0.00 0.00 3.91
4351 5131 3.731652 TCCCAAACTCAAATGTTGCTG 57.268 42.857 0.00 0.00 0.00 4.41
4352 5132 2.137523 CCCAAACTCAAATGTTGCTGC 58.862 47.619 0.00 0.00 0.00 5.25
4353 5133 2.224113 CCCAAACTCAAATGTTGCTGCT 60.224 45.455 0.00 0.00 0.00 4.24
4354 5134 3.460103 CCAAACTCAAATGTTGCTGCTT 58.540 40.909 0.00 0.00 0.00 3.91
4355 5135 3.492011 CCAAACTCAAATGTTGCTGCTTC 59.508 43.478 0.00 0.00 0.00 3.86
4356 5136 4.365723 CAAACTCAAATGTTGCTGCTTCT 58.634 39.130 0.00 0.00 0.00 2.85
4357 5137 4.660789 AACTCAAATGTTGCTGCTTCTT 57.339 36.364 0.00 0.00 0.00 2.52
4358 5138 5.772825 AACTCAAATGTTGCTGCTTCTTA 57.227 34.783 0.00 0.00 0.00 2.10
4359 5139 5.368256 ACTCAAATGTTGCTGCTTCTTAG 57.632 39.130 0.00 0.00 0.00 2.18
4360 5140 4.217118 ACTCAAATGTTGCTGCTTCTTAGG 59.783 41.667 0.00 0.00 0.00 2.69
4361 5141 3.057315 TCAAATGTTGCTGCTTCTTAGGC 60.057 43.478 0.00 0.00 0.00 3.93
4362 5142 1.467920 ATGTTGCTGCTTCTTAGGCC 58.532 50.000 0.00 0.00 0.00 5.19
4363 5143 0.401738 TGTTGCTGCTTCTTAGGCCT 59.598 50.000 11.78 11.78 0.00 5.19
4364 5144 1.202927 TGTTGCTGCTTCTTAGGCCTT 60.203 47.619 12.58 0.00 0.00 4.35
4365 5145 2.039746 TGTTGCTGCTTCTTAGGCCTTA 59.960 45.455 12.58 0.00 0.00 2.69
4366 5146 3.282885 GTTGCTGCTTCTTAGGCCTTAT 58.717 45.455 12.58 0.00 0.00 1.73
4367 5147 4.080582 TGTTGCTGCTTCTTAGGCCTTATA 60.081 41.667 12.58 0.00 0.00 0.98
4368 5148 4.073293 TGCTGCTTCTTAGGCCTTATAC 57.927 45.455 12.58 0.00 0.00 1.47
4369 5149 3.454447 TGCTGCTTCTTAGGCCTTATACA 59.546 43.478 12.58 1.23 0.00 2.29
4370 5150 4.080582 TGCTGCTTCTTAGGCCTTATACAA 60.081 41.667 12.58 0.00 0.00 2.41
4371 5151 5.066593 GCTGCTTCTTAGGCCTTATACAAT 58.933 41.667 12.58 0.00 0.00 2.71
4372 5152 5.049129 GCTGCTTCTTAGGCCTTATACAATG 60.049 44.000 12.58 0.00 0.00 2.82
4373 5153 4.821805 TGCTTCTTAGGCCTTATACAATGC 59.178 41.667 12.58 6.63 0.00 3.56
4374 5154 4.821805 GCTTCTTAGGCCTTATACAATGCA 59.178 41.667 12.58 0.00 0.00 3.96
4375 5155 5.299279 GCTTCTTAGGCCTTATACAATGCAA 59.701 40.000 12.58 0.00 0.00 4.08
4376 5156 6.183360 GCTTCTTAGGCCTTATACAATGCAAA 60.183 38.462 12.58 0.00 0.00 3.68
4377 5157 6.942532 TCTTAGGCCTTATACAATGCAAAG 57.057 37.500 12.58 3.54 0.00 2.77
4378 5158 6.423182 TCTTAGGCCTTATACAATGCAAAGT 58.577 36.000 12.58 0.00 0.00 2.66
4379 5159 4.989279 AGGCCTTATACAATGCAAAGTG 57.011 40.909 0.00 0.00 0.00 3.16
4380 5160 3.131046 AGGCCTTATACAATGCAAAGTGC 59.869 43.478 0.00 0.00 45.29 4.40
4381 5161 3.131046 GGCCTTATACAATGCAAAGTGCT 59.869 43.478 0.00 0.00 45.31 4.40
4382 5162 4.354587 GCCTTATACAATGCAAAGTGCTC 58.645 43.478 0.00 0.00 45.31 4.26
4383 5163 4.142403 GCCTTATACAATGCAAAGTGCTCA 60.142 41.667 0.00 0.00 45.31 4.26
4384 5164 5.575957 CCTTATACAATGCAAAGTGCTCAG 58.424 41.667 0.00 0.00 45.31 3.35
4385 5165 5.449588 CCTTATACAATGCAAAGTGCTCAGG 60.450 44.000 0.00 0.00 45.31 3.86
4386 5166 0.963962 ACAATGCAAAGTGCTCAGGG 59.036 50.000 0.00 0.00 45.31 4.45
4387 5167 1.250328 CAATGCAAAGTGCTCAGGGA 58.750 50.000 0.00 0.00 45.31 4.20
4388 5168 1.201647 CAATGCAAAGTGCTCAGGGAG 59.798 52.381 0.00 0.00 45.31 4.30
4389 5169 0.403271 ATGCAAAGTGCTCAGGGAGT 59.597 50.000 0.00 0.00 45.31 3.85
4390 5170 0.183492 TGCAAAGTGCTCAGGGAGTT 59.817 50.000 1.43 0.00 45.31 3.01
4391 5171 0.595095 GCAAAGTGCTCAGGGAGTTG 59.405 55.000 0.00 0.00 40.96 3.16
4392 5172 1.972872 CAAAGTGCTCAGGGAGTTGT 58.027 50.000 0.00 0.00 31.39 3.32
4393 5173 2.301346 CAAAGTGCTCAGGGAGTTGTT 58.699 47.619 0.00 0.00 31.39 2.83
4394 5174 2.689983 CAAAGTGCTCAGGGAGTTGTTT 59.310 45.455 0.00 0.00 31.39 2.83
4395 5175 3.857157 AAGTGCTCAGGGAGTTGTTTA 57.143 42.857 0.00 0.00 31.39 2.01
4396 5176 4.373156 AAGTGCTCAGGGAGTTGTTTAT 57.627 40.909 0.00 0.00 31.39 1.40
4397 5177 5.499004 AAGTGCTCAGGGAGTTGTTTATA 57.501 39.130 0.00 0.00 31.39 0.98
4398 5178 5.499004 AGTGCTCAGGGAGTTGTTTATAA 57.501 39.130 0.00 0.00 31.39 0.98
4399 5179 5.876357 AGTGCTCAGGGAGTTGTTTATAAA 58.124 37.500 0.00 0.00 31.39 1.40
4400 5180 6.303839 AGTGCTCAGGGAGTTGTTTATAAAA 58.696 36.000 0.00 0.00 31.39 1.52
4401 5181 6.775629 AGTGCTCAGGGAGTTGTTTATAAAAA 59.224 34.615 0.00 0.00 31.39 1.94
4402 5182 7.451566 AGTGCTCAGGGAGTTGTTTATAAAAAT 59.548 33.333 0.00 0.00 31.39 1.82
4403 5183 8.736244 GTGCTCAGGGAGTTGTTTATAAAAATA 58.264 33.333 0.00 0.00 31.39 1.40
4404 5184 9.303116 TGCTCAGGGAGTTGTTTATAAAAATAA 57.697 29.630 0.00 0.00 31.39 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 80 7.330262 AGTGTTCATCTTTCCAAAAATTGTGT 58.670 30.769 0.00 0.00 0.00 3.72
93 96 9.997482 TGTTCTAGTTTACAAAAAGTGTTCATC 57.003 29.630 0.00 0.00 41.98 2.92
153 165 9.199645 TGCATATCCAAAATTTCTTCTGGAATA 57.800 29.630 12.23 7.11 41.20 1.75
163 177 9.545611 GAACAATGTTTGCATATCCAAAATTTC 57.454 29.630 0.00 0.00 36.55 2.17
210 224 6.793492 TTTCCAAAAACTTTCAGGTGTTTG 57.207 33.333 0.00 0.00 41.51 2.93
388 413 8.893563 TTGGGAGTTTGATAAAATGTTCCTAT 57.106 30.769 4.58 0.00 0.00 2.57
389 414 8.581578 GTTTGGGAGTTTGATAAAATGTTCCTA 58.418 33.333 4.58 0.00 0.00 2.94
390 415 7.070571 TGTTTGGGAGTTTGATAAAATGTTCCT 59.929 33.333 4.58 0.00 0.00 3.36
392 417 8.655651 TTGTTTGGGAGTTTGATAAAATGTTC 57.344 30.769 0.00 0.00 0.00 3.18
401 426 8.572855 TTTCAAATTTTGTTTGGGAGTTTGAT 57.427 26.923 8.89 0.00 35.03 2.57
676 741 5.423886 GGAACCTTCTAGTTGATTCCTGAG 58.576 45.833 9.78 0.00 31.77 3.35
806 874 1.026584 TAACGCACGCAGCTAGGATA 58.973 50.000 0.00 0.00 42.61 2.59
812 880 2.432628 GAGGTAACGCACGCAGCT 60.433 61.111 0.00 0.00 46.39 4.24
817 885 0.662374 AACAGTCGAGGTAACGCACG 60.662 55.000 0.00 0.00 46.39 5.34
867 936 4.030216 TGCTTGGATCAGGACACTATGTA 58.970 43.478 0.00 0.00 0.00 2.29
868 937 2.840038 TGCTTGGATCAGGACACTATGT 59.160 45.455 0.00 0.00 0.00 2.29
869 938 3.464907 CTGCTTGGATCAGGACACTATG 58.535 50.000 0.00 0.00 0.00 2.23
870 939 2.158842 GCTGCTTGGATCAGGACACTAT 60.159 50.000 0.00 0.00 32.41 2.12
871 940 1.208052 GCTGCTTGGATCAGGACACTA 59.792 52.381 0.00 0.00 32.41 2.74
872 941 0.035630 GCTGCTTGGATCAGGACACT 60.036 55.000 0.00 0.00 32.41 3.55
873 942 0.321919 TGCTGCTTGGATCAGGACAC 60.322 55.000 0.00 0.00 32.41 3.67
874 943 0.401356 TTGCTGCTTGGATCAGGACA 59.599 50.000 0.00 0.00 31.60 4.02
875 944 1.760192 ATTGCTGCTTGGATCAGGAC 58.240 50.000 0.00 0.00 31.60 3.85
876 945 2.372264 GAATTGCTGCTTGGATCAGGA 58.628 47.619 0.00 0.00 32.41 3.86
877 946 1.407979 GGAATTGCTGCTTGGATCAGG 59.592 52.381 0.00 0.00 32.41 3.86
878 947 2.097036 TGGAATTGCTGCTTGGATCAG 58.903 47.619 0.00 0.00 34.79 2.90
879 948 2.219080 TGGAATTGCTGCTTGGATCA 57.781 45.000 0.00 0.00 0.00 2.92
880 949 3.256558 GTTTGGAATTGCTGCTTGGATC 58.743 45.455 0.00 0.00 0.00 3.36
881 950 2.027837 GGTTTGGAATTGCTGCTTGGAT 60.028 45.455 0.00 0.00 0.00 3.41
882 951 1.344114 GGTTTGGAATTGCTGCTTGGA 59.656 47.619 0.00 0.00 0.00 3.53
883 952 1.070445 TGGTTTGGAATTGCTGCTTGG 59.930 47.619 0.00 0.00 0.00 3.61
884 953 2.224113 ACTGGTTTGGAATTGCTGCTTG 60.224 45.455 0.00 0.00 0.00 4.01
885 954 2.041701 ACTGGTTTGGAATTGCTGCTT 58.958 42.857 0.00 0.00 0.00 3.91
886 955 1.708341 ACTGGTTTGGAATTGCTGCT 58.292 45.000 0.00 0.00 0.00 4.24
887 956 2.531522 AACTGGTTTGGAATTGCTGC 57.468 45.000 0.00 0.00 0.00 5.25
888 957 4.931002 CCATAAACTGGTTTGGAATTGCTG 59.069 41.667 8.73 0.00 40.49 4.41
889 958 4.020307 CCCATAAACTGGTTTGGAATTGCT 60.020 41.667 8.73 0.00 44.30 3.91
890 959 4.252878 CCCATAAACTGGTTTGGAATTGC 58.747 43.478 8.73 0.00 44.30 3.56
891 960 4.252878 GCCCATAAACTGGTTTGGAATTG 58.747 43.478 8.73 0.55 44.30 2.32
892 961 3.263170 GGCCCATAAACTGGTTTGGAATT 59.737 43.478 8.73 0.00 44.30 2.17
893 962 2.837591 GGCCCATAAACTGGTTTGGAAT 59.162 45.455 8.73 0.00 44.30 3.01
894 963 2.158234 AGGCCCATAAACTGGTTTGGAA 60.158 45.455 0.00 0.00 44.30 3.53
895 964 1.431243 AGGCCCATAAACTGGTTTGGA 59.569 47.619 0.00 0.00 44.30 3.53
896 965 1.550072 CAGGCCCATAAACTGGTTTGG 59.450 52.381 0.00 3.60 44.30 3.28
897 966 1.066929 GCAGGCCCATAAACTGGTTTG 60.067 52.381 0.00 0.00 44.30 2.93
898 967 1.266178 GCAGGCCCATAAACTGGTTT 58.734 50.000 0.00 4.15 44.30 3.27
899 968 0.965363 CGCAGGCCCATAAACTGGTT 60.965 55.000 0.00 0.00 44.30 3.67
900 969 1.378514 CGCAGGCCCATAAACTGGT 60.379 57.895 0.00 0.00 44.30 4.00
901 970 2.120909 CCGCAGGCCCATAAACTGG 61.121 63.158 0.00 0.00 46.14 4.00
902 971 3.513225 CCGCAGGCCCATAAACTG 58.487 61.111 0.00 0.00 46.14 3.16
930 999 2.432510 GGCTCTGTTGCTGGTACTATCT 59.567 50.000 0.00 0.00 0.00 1.98
947 1017 2.396590 TAAGATCGTGGTTTGGGCTC 57.603 50.000 0.00 0.00 0.00 4.70
1028 1098 2.029649 GGGGTTTAGGGTTTCGCTTTTC 60.030 50.000 0.00 0.00 0.00 2.29
1060 1130 0.040246 GTCGGATCGGATCGAAGGTC 60.040 60.000 11.62 0.00 39.99 3.85
1131 1201 0.987294 ATGACCTGGGAGTTCCACAG 59.013 55.000 0.00 5.31 41.46 3.66
1204 1274 1.004080 GGCAGAGCAGAGCACTTGA 60.004 57.895 0.00 0.00 0.00 3.02
1226 1590 1.332375 CGCGAAGGAAACAGGAAAACA 59.668 47.619 0.00 0.00 0.00 2.83
1258 1622 5.892119 AGAGCTATTACAACTACAGCTACCA 59.108 40.000 0.00 0.00 42.44 3.25
1260 1624 5.688176 GCAGAGCTATTACAACTACAGCTAC 59.312 44.000 0.00 0.00 42.44 3.58
1261 1625 5.594725 AGCAGAGCTATTACAACTACAGCTA 59.405 40.000 0.00 0.00 42.44 3.32
1262 1626 4.404073 AGCAGAGCTATTACAACTACAGCT 59.596 41.667 0.00 0.00 44.95 4.24
1263 1627 4.505922 CAGCAGAGCTATTACAACTACAGC 59.494 45.833 0.00 0.00 36.40 4.40
1264 1628 4.505922 GCAGCAGAGCTATTACAACTACAG 59.494 45.833 0.00 0.00 36.40 2.74
1265 1629 4.160439 AGCAGCAGAGCTATTACAACTACA 59.840 41.667 0.00 0.00 44.50 2.74
1270 1634 4.156556 CCAAAAGCAGCAGAGCTATTACAA 59.843 41.667 0.00 0.00 45.89 2.41
1293 1657 2.669808 ATCATCTCACTCGCGCCGAC 62.670 60.000 0.00 0.00 0.00 4.79
1296 1660 1.413382 CTAATCATCTCACTCGCGCC 58.587 55.000 0.00 0.00 0.00 6.53
1303 1667 0.875908 TGCGCCGCTAATCATCTCAC 60.876 55.000 11.67 0.00 0.00 3.51
1309 1673 0.529773 CCTACTTGCGCCGCTAATCA 60.530 55.000 11.67 0.00 0.00 2.57
1344 1708 2.447070 AACGTAATCGCGCCGAACC 61.447 57.895 9.95 0.00 39.99 3.62
1345 1709 1.295645 CAACGTAATCGCGCCGAAC 60.296 57.895 9.95 2.65 39.99 3.95
1351 1715 1.058748 CACCAGCAACGTAATCGCG 59.941 57.895 0.00 0.00 41.18 5.87
1389 1753 3.602483 GCGTCAACTGGGGAAAGTATAA 58.398 45.455 0.00 0.00 0.00 0.98
1393 1757 1.597027 CGCGTCAACTGGGGAAAGT 60.597 57.895 0.00 0.00 0.00 2.66
1412 1790 6.987992 GGTATGATTTGTACGAGGAAACCATA 59.012 38.462 0.00 0.00 0.00 2.74
1427 1805 2.838736 AGTAGCGGCTGGTATGATTTG 58.161 47.619 13.86 0.00 0.00 2.32
1484 1862 1.665679 CAGGCAACATAGCTGGTTACG 59.334 52.381 0.00 0.00 41.41 3.18
1577 1955 9.499479 GCAGATCAGGAGAAGAATCATAAATTA 57.501 33.333 0.00 0.00 0.00 1.40
1578 1956 8.219178 AGCAGATCAGGAGAAGAATCATAAATT 58.781 33.333 0.00 0.00 0.00 1.82
1663 2042 5.036737 CAGTGTTCTTTTGCAGGTACAAAG 58.963 41.667 2.05 2.05 40.43 2.77
1664 2043 4.142271 CCAGTGTTCTTTTGCAGGTACAAA 60.142 41.667 0.00 0.00 37.74 2.83
1665 2044 3.380004 CCAGTGTTCTTTTGCAGGTACAA 59.620 43.478 0.00 0.00 0.00 2.41
1669 2048 2.435372 TCCAGTGTTCTTTTGCAGGT 57.565 45.000 0.00 0.00 0.00 4.00
1686 2065 8.010733 TGAAAAATTCATCCTAATGGTCATCC 57.989 34.615 0.00 0.00 34.08 3.51
1782 2371 5.958380 ACAAGTAGATGAGGAGACCATGTAA 59.042 40.000 0.00 0.00 0.00 2.41
1786 2375 8.964533 ATATAACAAGTAGATGAGGAGACCAT 57.035 34.615 0.00 0.00 0.00 3.55
1794 2383 8.554528 CAACAGGCAATATAACAAGTAGATGAG 58.445 37.037 0.00 0.00 0.00 2.90
2026 2658 4.709397 ACCAAAGTTCAAATTCCACTGTCA 59.291 37.500 0.00 0.00 0.00 3.58
2091 2724 1.271597 ACTTGAAGAGGTGGCACATCC 60.272 52.381 26.79 14.22 43.09 3.51
2092 2725 2.079925 GACTTGAAGAGGTGGCACATC 58.920 52.381 23.66 23.66 44.52 3.06
2093 2726 1.701847 AGACTTGAAGAGGTGGCACAT 59.298 47.619 20.82 13.44 44.52 3.21
2094 2727 1.131638 AGACTTGAAGAGGTGGCACA 58.868 50.000 20.82 0.00 0.00 4.57
2111 2744 7.551262 TGAAGTAAGTTGAGTTGCTAAAACAGA 59.449 33.333 0.00 0.00 0.00 3.41
2124 2767 5.755375 TGAAACTGCTCTGAAGTAAGTTGAG 59.245 40.000 0.00 0.00 34.08 3.02
2192 2839 3.120321 TGCCATACGGATACCATTGTC 57.880 47.619 0.00 0.00 0.00 3.18
2194 2841 3.673902 TCATGCCATACGGATACCATTG 58.326 45.455 0.00 0.00 0.00 2.82
2197 2844 2.236146 GGATCATGCCATACGGATACCA 59.764 50.000 0.00 0.00 0.00 3.25
2198 2845 2.236146 TGGATCATGCCATACGGATACC 59.764 50.000 0.00 0.00 31.66 2.73
2253 2900 1.140312 ACTGACATGGTGGTGAAGGT 58.860 50.000 0.00 0.00 0.00 3.50
2324 3004 4.342772 CAACCTTTTCTTCAGTGTTCGTG 58.657 43.478 0.00 0.00 0.00 4.35
2325 3005 3.377172 CCAACCTTTTCTTCAGTGTTCGT 59.623 43.478 0.00 0.00 0.00 3.85
2326 3006 3.792124 GCCAACCTTTTCTTCAGTGTTCG 60.792 47.826 0.00 0.00 0.00 3.95
2327 3007 3.490933 GGCCAACCTTTTCTTCAGTGTTC 60.491 47.826 0.00 0.00 0.00 3.18
2328 3008 2.430694 GGCCAACCTTTTCTTCAGTGTT 59.569 45.455 0.00 0.00 0.00 3.32
2329 3009 2.031870 GGCCAACCTTTTCTTCAGTGT 58.968 47.619 0.00 0.00 0.00 3.55
2330 3010 1.341209 GGGCCAACCTTTTCTTCAGTG 59.659 52.381 4.39 0.00 35.85 3.66
2331 3011 1.704641 GGGCCAACCTTTTCTTCAGT 58.295 50.000 4.39 0.00 35.85 3.41
2344 3024 1.377690 TGTCCTAAATCCAGGGCCAA 58.622 50.000 6.18 0.00 39.76 4.52
2403 3084 1.295792 TGAAATATTGCCGACTCGCC 58.704 50.000 0.00 0.00 0.00 5.54
2438 3119 9.914131 CTTCGAATGATGAGTTCCTATATGTTA 57.086 33.333 0.00 0.00 0.00 2.41
2441 3122 6.815641 CCCTTCGAATGATGAGTTCCTATATG 59.184 42.308 0.00 0.00 0.00 1.78
2459 3141 0.253044 CATCTTTGGCCTCCCTTCGA 59.747 55.000 3.32 0.00 0.00 3.71
2461 3143 3.217626 CATACATCTTTGGCCTCCCTTC 58.782 50.000 3.32 0.00 0.00 3.46
2499 3181 7.320443 ACTAGTACAACACAATATGCCAATG 57.680 36.000 0.00 0.00 0.00 2.82
2506 3188 8.615878 TCAAAGCAACTAGTACAACACAATAT 57.384 30.769 0.00 0.00 0.00 1.28
2518 3200 3.403038 AGCACGATTCAAAGCAACTAGT 58.597 40.909 0.00 0.00 0.00 2.57
2534 3216 0.872388 GTTTGGACAGGGTTAGCACG 59.128 55.000 0.00 0.00 0.00 5.34
2536 3218 1.213182 TGTGTTTGGACAGGGTTAGCA 59.787 47.619 0.00 0.00 36.20 3.49
2585 3273 5.887598 ACTATTAATTTCCATCACAGCAGCA 59.112 36.000 0.00 0.00 0.00 4.41
2661 3356 3.811497 TCCAGATTGCTCTAAATGATGCG 59.189 43.478 0.00 0.00 0.00 4.73
2695 3390 5.594725 CACCCAGACACATATAGTAGACAGT 59.405 44.000 0.00 0.00 0.00 3.55
2736 3431 1.955778 GCATATGCCATGCACAGGTTA 59.044 47.619 17.26 2.55 43.04 2.85
2740 3435 1.029681 ACAGCATATGCCATGCACAG 58.970 50.000 23.96 12.18 46.77 3.66
2812 3507 5.047802 GGACAGCAATCCAATTCAAGAGAAA 60.048 40.000 1.48 0.00 38.77 2.52
2814 3509 4.012374 GGACAGCAATCCAATTCAAGAGA 58.988 43.478 1.48 0.00 38.77 3.10
2849 3544 8.154649 TCTAGACCAAATTTCAGTTCAAAGTC 57.845 34.615 0.00 0.00 0.00 3.01
2868 3563 7.412455 GCATTTTAGTTCTGCTCTGTTCTAGAC 60.412 40.741 0.00 0.00 33.15 2.59
2872 3567 4.457257 GGCATTTTAGTTCTGCTCTGTTCT 59.543 41.667 0.00 0.00 36.18 3.01
2875 3570 3.084786 GGGCATTTTAGTTCTGCTCTGT 58.915 45.455 0.00 0.00 33.53 3.41
2892 3587 2.825532 GTTTTGGATTCAGCTAAGGGCA 59.174 45.455 0.00 0.00 44.79 5.36
2920 3617 1.312815 GATGCTCCACTAACATGGGC 58.687 55.000 0.00 0.00 40.49 5.36
2923 3620 4.379813 GGTGTTTGATGCTCCACTAACATG 60.380 45.833 0.00 0.00 35.28 3.21
2946 3643 3.249917 GTCAAATTTGGCCATGTAACGG 58.750 45.455 17.90 0.00 0.00 4.44
2988 3685 4.553330 AACACGATGGAAGGTCACTAAT 57.447 40.909 0.00 0.00 0.00 1.73
3002 3699 8.364129 AGCATAAAATTTTCACAAAACACGAT 57.636 26.923 6.72 0.00 32.37 3.73
3047 3744 6.208204 AGCACTCTCTGTAAATCAAAAGCAAT 59.792 34.615 0.00 0.00 0.00 3.56
3145 3842 0.179150 CTGCTCAGCCACTACGACTC 60.179 60.000 0.00 0.00 0.00 3.36
3146 3843 1.599606 CCTGCTCAGCCACTACGACT 61.600 60.000 0.00 0.00 0.00 4.18
3149 3846 1.320344 TACCCTGCTCAGCCACTACG 61.320 60.000 0.00 0.00 0.00 3.51
3227 3924 5.123227 CAAGAAACCCACAAGTCTGAGTAA 58.877 41.667 0.00 0.00 0.00 2.24
3256 3953 3.300009 CGAGAAATGCTTCAAACACCAC 58.700 45.455 0.00 0.00 33.64 4.16
3284 3981 8.670135 TCGACTCAAAAAGAACAAGTCAAATAA 58.330 29.630 0.00 0.00 36.91 1.40
3294 3991 3.531538 AGTGCTCGACTCAAAAAGAACA 58.468 40.909 0.00 0.00 0.00 3.18
3308 4005 4.103365 ACTCATAGAAGACAAGTGCTCG 57.897 45.455 0.00 0.00 0.00 5.03
3360 4060 2.225491 CACAACCGTAGATTTGTGGTGG 59.775 50.000 6.57 0.00 43.15 4.61
3402 4103 5.471797 TCAAAGCGTTCCATCTAAACAATGA 59.528 36.000 0.00 0.00 0.00 2.57
3403 4104 5.698832 TCAAAGCGTTCCATCTAAACAATG 58.301 37.500 0.00 0.00 0.00 2.82
3416 4117 4.156008 ACCCATAACAGAATCAAAGCGTTC 59.844 41.667 0.00 0.00 0.00 3.95
3437 4138 0.817654 GCCCATTCTTTAGCCACACC 59.182 55.000 0.00 0.00 0.00 4.16
3438 4139 1.544724 TGCCCATTCTTTAGCCACAC 58.455 50.000 0.00 0.00 0.00 3.82
3486 4187 3.393800 CGAACGAGATGCTGGGAATATT 58.606 45.455 0.00 0.00 0.00 1.28
3487 4188 2.289072 CCGAACGAGATGCTGGGAATAT 60.289 50.000 0.00 0.00 0.00 1.28
3488 4189 1.068588 CCGAACGAGATGCTGGGAATA 59.931 52.381 0.00 0.00 0.00 1.75
3489 4190 0.179073 CCGAACGAGATGCTGGGAAT 60.179 55.000 0.00 0.00 0.00 3.01
3490 4191 1.218047 CCGAACGAGATGCTGGGAA 59.782 57.895 0.00 0.00 0.00 3.97
3491 4192 1.982395 ACCGAACGAGATGCTGGGA 60.982 57.895 0.00 0.00 0.00 4.37
3494 4195 0.388520 TGTCACCGAACGAGATGCTG 60.389 55.000 0.00 0.00 0.00 4.41
3543 4244 8.623903 GTCATTTTGTTCTGATGATAATGCCTA 58.376 33.333 0.00 0.00 32.92 3.93
3597 4298 4.895297 AGAAGTCCTGCCATTTCAGAAAAA 59.105 37.500 0.00 0.00 36.19 1.94
3602 4303 3.372206 CGTAAGAAGTCCTGCCATTTCAG 59.628 47.826 0.00 0.00 43.02 3.02
3623 4324 2.711542 ACCAAGCAACTATTCCCTTCG 58.288 47.619 0.00 0.00 0.00 3.79
3649 4350 5.976534 CACTCAATGTCGGTTGATTTCAAAA 59.023 36.000 0.00 0.00 37.47 2.44
3650 4351 5.067153 ACACTCAATGTCGGTTGATTTCAAA 59.933 36.000 0.00 0.00 36.54 2.69
3651 4352 4.578516 ACACTCAATGTCGGTTGATTTCAA 59.421 37.500 0.00 0.00 36.54 2.69
3652 4353 4.133820 ACACTCAATGTCGGTTGATTTCA 58.866 39.130 0.54 0.00 36.54 2.69
3653 4354 4.749245 ACACTCAATGTCGGTTGATTTC 57.251 40.909 0.54 0.00 36.54 2.17
3655 4356 6.640518 ACTATACACTCAATGTCGGTTGATT 58.359 36.000 0.54 0.00 42.09 2.57
3656 4357 6.222038 ACTATACACTCAATGTCGGTTGAT 57.778 37.500 0.54 0.00 42.09 2.57
3658 4359 5.445939 GCAACTATACACTCAATGTCGGTTG 60.446 44.000 0.00 0.00 42.09 3.77
3660 4361 4.081642 AGCAACTATACACTCAATGTCGGT 60.082 41.667 0.00 0.00 42.09 4.69
3661 4362 4.433615 AGCAACTATACACTCAATGTCGG 58.566 43.478 0.00 0.00 42.09 4.79
3662 4363 5.220472 CCAAGCAACTATACACTCAATGTCG 60.220 44.000 0.00 0.00 42.09 4.35
3663 4364 5.643777 ACCAAGCAACTATACACTCAATGTC 59.356 40.000 0.00 0.00 42.09 3.06
3665 4366 6.500684 AACCAAGCAACTATACACTCAATG 57.499 37.500 0.00 0.00 0.00 2.82
3667 4368 8.630054 AATTAACCAAGCAACTATACACTCAA 57.370 30.769 0.00 0.00 0.00 3.02
3668 4369 9.727859 TTAATTAACCAAGCAACTATACACTCA 57.272 29.630 0.00 0.00 0.00 3.41
3670 4371 9.174166 CCTTAATTAACCAAGCAACTATACACT 57.826 33.333 0.00 0.00 0.00 3.55
3671 4372 9.169592 TCCTTAATTAACCAAGCAACTATACAC 57.830 33.333 0.00 0.00 0.00 2.90
3675 4376 8.251026 GCTTTCCTTAATTAACCAAGCAACTAT 58.749 33.333 18.19 0.00 36.11 2.12
3676 4377 7.309560 GGCTTTCCTTAATTAACCAAGCAACTA 60.310 37.037 21.60 0.00 37.49 2.24
3677 4378 6.455647 GCTTTCCTTAATTAACCAAGCAACT 58.544 36.000 18.19 0.00 36.11 3.16
3683 4407 5.182380 CACTCGGCTTTCCTTAATTAACCAA 59.818 40.000 0.00 0.00 0.00 3.67
3686 4410 6.490566 TTCACTCGGCTTTCCTTAATTAAC 57.509 37.500 0.00 0.00 0.00 2.01
3694 4418 2.640316 AGTTTTCACTCGGCTTTCCT 57.360 45.000 0.00 0.00 0.00 3.36
3696 4420 5.179555 ACAATCTAGTTTTCACTCGGCTTTC 59.820 40.000 0.00 0.00 34.06 2.62
3697 4421 5.063880 ACAATCTAGTTTTCACTCGGCTTT 58.936 37.500 0.00 0.00 34.06 3.51
3698 4422 4.642429 ACAATCTAGTTTTCACTCGGCTT 58.358 39.130 0.00 0.00 34.06 4.35
3700 4424 4.246458 AGACAATCTAGTTTTCACTCGGC 58.754 43.478 0.00 0.00 34.06 5.54
3733 4457 3.368248 AGTCGGGCTACCTTATGTGTTA 58.632 45.455 0.00 0.00 33.28 2.41
3745 4469 1.480954 GACCTCATCAAAGTCGGGCTA 59.519 52.381 0.00 0.00 0.00 3.93
3746 4470 0.250513 GACCTCATCAAAGTCGGGCT 59.749 55.000 0.00 0.00 0.00 5.19
3747 4471 0.744771 GGACCTCATCAAAGTCGGGC 60.745 60.000 0.00 0.00 0.00 6.13
3748 4472 0.460284 CGGACCTCATCAAAGTCGGG 60.460 60.000 0.00 0.00 0.00 5.14
3751 4475 1.405661 GGGTCGGACCTCATCAAAGTC 60.406 57.143 25.39 2.25 38.64 3.01
3755 4479 1.229368 TGGGGTCGGACCTCATCAA 60.229 57.895 25.68 2.86 45.61 2.57
3756 4480 2.447920 TGGGGTCGGACCTCATCA 59.552 61.111 25.68 15.36 45.61 3.07
3770 4494 3.726517 CAAAGTCGCCTGCGTGGG 61.727 66.667 11.68 0.00 40.74 4.61
3771 4495 2.034879 ATCAAAGTCGCCTGCGTGG 61.035 57.895 11.68 0.00 40.74 4.94
3772 4496 1.133253 CATCAAAGTCGCCTGCGTG 59.867 57.895 11.68 2.52 40.74 5.34
3773 4497 2.680913 GCATCAAAGTCGCCTGCGT 61.681 57.895 11.68 0.00 40.74 5.24
3774 4498 2.099062 GCATCAAAGTCGCCTGCG 59.901 61.111 4.92 4.92 41.35 5.18
3775 4499 1.136147 CAGCATCAAAGTCGCCTGC 59.864 57.895 0.00 0.00 0.00 4.85
3776 4500 1.136147 GCAGCATCAAAGTCGCCTG 59.864 57.895 0.00 0.00 0.00 4.85
3777 4501 2.042831 GGCAGCATCAAAGTCGCCT 61.043 57.895 0.00 0.00 36.58 5.52
3778 4502 1.660560 ATGGCAGCATCAAAGTCGCC 61.661 55.000 0.00 0.00 40.02 5.54
3780 4504 0.027194 CGATGGCAGCATCAAAGTCG 59.973 55.000 2.73 0.00 0.00 4.18
3781 4505 1.063174 GACGATGGCAGCATCAAAGTC 59.937 52.381 2.73 0.00 0.00 3.01
3783 4507 0.027194 CGACGATGGCAGCATCAAAG 59.973 55.000 2.73 0.00 0.00 2.77
3784 4508 0.390998 TCGACGATGGCAGCATCAAA 60.391 50.000 2.73 0.00 0.00 2.69
3785 4509 1.083806 GTCGACGATGGCAGCATCAA 61.084 55.000 2.73 0.00 0.00 2.57
3787 4511 1.211818 GAGTCGACGATGGCAGCATC 61.212 60.000 10.46 0.00 0.00 3.91
3790 4514 1.446099 TTGAGTCGACGATGGCAGC 60.446 57.895 10.46 0.00 0.00 5.25
3791 4515 1.078759 GGTTGAGTCGACGATGGCAG 61.079 60.000 10.46 0.00 0.00 4.85
3792 4516 1.080093 GGTTGAGTCGACGATGGCA 60.080 57.895 10.46 2.11 0.00 4.92
3795 4563 2.638329 GTCGGTTGAGTCGACGATG 58.362 57.895 10.46 0.00 45.53 3.84
3811 4579 9.378551 TGTAATCTTGGTTATACACTCAATGTC 57.621 33.333 0.00 0.00 42.09 3.06
3815 4583 9.031537 TCTCTGTAATCTTGGTTATACACTCAA 57.968 33.333 0.00 0.00 0.00 3.02
3817 4585 9.522804 CTTCTCTGTAATCTTGGTTATACACTC 57.477 37.037 0.00 0.00 0.00 3.51
3818 4586 7.982354 GCTTCTCTGTAATCTTGGTTATACACT 59.018 37.037 0.00 0.00 0.00 3.55
3819 4587 7.764443 TGCTTCTCTGTAATCTTGGTTATACAC 59.236 37.037 0.00 0.00 0.00 2.90
3820 4588 7.847096 TGCTTCTCTGTAATCTTGGTTATACA 58.153 34.615 0.00 0.00 0.00 2.29
3821 4589 8.718102 TTGCTTCTCTGTAATCTTGGTTATAC 57.282 34.615 0.00 0.00 0.00 1.47
3822 4590 9.905713 ATTTGCTTCTCTGTAATCTTGGTTATA 57.094 29.630 0.00 0.00 0.00 0.98
3833 4601 8.094548 TGAGCTACTTTATTTGCTTCTCTGTAA 58.905 33.333 0.00 0.00 35.76 2.41
3835 4603 6.370166 GTGAGCTACTTTATTTGCTTCTCTGT 59.630 38.462 0.00 0.00 35.76 3.41
3836 4604 6.454848 CGTGAGCTACTTTATTTGCTTCTCTG 60.455 42.308 0.00 0.00 35.76 3.35
3837 4605 5.578727 CGTGAGCTACTTTATTTGCTTCTCT 59.421 40.000 0.00 0.00 35.76 3.10
3838 4606 5.577164 TCGTGAGCTACTTTATTTGCTTCTC 59.423 40.000 0.00 0.00 35.76 2.87
3839 4607 5.479306 TCGTGAGCTACTTTATTTGCTTCT 58.521 37.500 0.00 0.00 35.76 2.85
3841 4609 5.238583 ACTCGTGAGCTACTTTATTTGCTT 58.761 37.500 0.00 0.00 35.76 3.91
3844 4612 5.790495 GCAAACTCGTGAGCTACTTTATTTG 59.210 40.000 0.00 0.00 0.00 2.32
3845 4613 5.389516 CGCAAACTCGTGAGCTACTTTATTT 60.390 40.000 0.00 0.00 0.00 1.40
3846 4614 4.091509 CGCAAACTCGTGAGCTACTTTATT 59.908 41.667 0.00 0.00 0.00 1.40
3847 4615 3.612860 CGCAAACTCGTGAGCTACTTTAT 59.387 43.478 0.00 0.00 0.00 1.40
3848 4616 2.984471 CGCAAACTCGTGAGCTACTTTA 59.016 45.455 0.00 0.00 0.00 1.85
3849 4617 1.792949 CGCAAACTCGTGAGCTACTTT 59.207 47.619 0.00 0.00 0.00 2.66
3850 4618 1.000607 TCGCAAACTCGTGAGCTACTT 60.001 47.619 0.00 0.00 0.00 2.24
3851 4619 0.596577 TCGCAAACTCGTGAGCTACT 59.403 50.000 0.00 0.00 0.00 2.57
3852 4620 0.985549 CTCGCAAACTCGTGAGCTAC 59.014 55.000 0.00 0.00 36.77 3.58
3853 4621 0.596577 ACTCGCAAACTCGTGAGCTA 59.403 50.000 1.57 0.00 45.51 3.32
3854 4622 0.249489 AACTCGCAAACTCGTGAGCT 60.249 50.000 1.57 0.00 45.51 4.09
3855 4623 0.582005 AAACTCGCAAACTCGTGAGC 59.418 50.000 1.57 0.00 45.51 4.26
3856 4624 2.159960 GCTAAACTCGCAAACTCGTGAG 60.160 50.000 0.00 0.00 46.71 3.51
3857 4625 1.790623 GCTAAACTCGCAAACTCGTGA 59.209 47.619 0.00 0.00 0.00 4.35
3858 4626 1.792949 AGCTAAACTCGCAAACTCGTG 59.207 47.619 0.00 0.00 0.00 4.35
3859 4627 2.150397 AGCTAAACTCGCAAACTCGT 57.850 45.000 0.00 0.00 0.00 4.18
3860 4628 3.499048 TCTAGCTAAACTCGCAAACTCG 58.501 45.455 0.00 0.00 0.00 4.18
3861 4629 6.410243 AAATCTAGCTAAACTCGCAAACTC 57.590 37.500 0.00 0.00 0.00 3.01
3862 4630 6.426937 TGAAAATCTAGCTAAACTCGCAAACT 59.573 34.615 0.00 0.00 0.00 2.66
3863 4631 6.599437 TGAAAATCTAGCTAAACTCGCAAAC 58.401 36.000 0.00 0.00 0.00 2.93
3864 4632 6.795098 TGAAAATCTAGCTAAACTCGCAAA 57.205 33.333 0.00 0.00 0.00 3.68
3865 4633 6.985188 ATGAAAATCTAGCTAAACTCGCAA 57.015 33.333 0.00 0.00 0.00 4.85
3866 4634 6.593770 TCAATGAAAATCTAGCTAAACTCGCA 59.406 34.615 0.00 0.00 0.00 5.10
3867 4635 7.005062 TCAATGAAAATCTAGCTAAACTCGC 57.995 36.000 0.00 0.00 0.00 5.03
3868 4636 9.994432 AAATCAATGAAAATCTAGCTAAACTCG 57.006 29.630 0.00 0.00 0.00 4.18
3883 4651 9.709495 CCTCAAACCAATTAGAAATCAATGAAA 57.291 29.630 0.00 0.00 0.00 2.69
3884 4652 9.087871 TCCTCAAACCAATTAGAAATCAATGAA 57.912 29.630 0.00 0.00 0.00 2.57
3885 4653 8.648698 TCCTCAAACCAATTAGAAATCAATGA 57.351 30.769 0.00 0.00 0.00 2.57
3886 4654 9.143631 GTTCCTCAAACCAATTAGAAATCAATG 57.856 33.333 0.00 0.00 31.20 2.82
3902 4670 9.325198 ACAATTTCATTTAAAGGTTCCTCAAAC 57.675 29.630 0.00 0.00 37.12 2.93
3932 4700 6.481954 AAAAGTACATCGTTTGTGAGGATC 57.518 37.500 0.00 0.00 39.48 3.36
3933 4701 6.877611 AAAAAGTACATCGTTTGTGAGGAT 57.122 33.333 0.00 0.00 39.48 3.24
3934 4702 7.876068 AGATAAAAAGTACATCGTTTGTGAGGA 59.124 33.333 0.00 0.00 39.48 3.71
3935 4703 8.029642 AGATAAAAAGTACATCGTTTGTGAGG 57.970 34.615 0.00 0.00 39.48 3.86
3936 4704 8.926710 AGAGATAAAAAGTACATCGTTTGTGAG 58.073 33.333 0.00 0.00 39.48 3.51
3937 4705 8.827177 AGAGATAAAAAGTACATCGTTTGTGA 57.173 30.769 0.00 0.00 39.48 3.58
3939 4707 9.924650 ACTAGAGATAAAAAGTACATCGTTTGT 57.075 29.630 0.00 0.00 42.62 2.83
3993 4761 5.472137 TGATACTTTCGCAGCCTAACTTTTT 59.528 36.000 0.00 0.00 0.00 1.94
3994 4762 5.001232 TGATACTTTCGCAGCCTAACTTTT 58.999 37.500 0.00 0.00 0.00 2.27
3995 4763 4.575885 TGATACTTTCGCAGCCTAACTTT 58.424 39.130 0.00 0.00 0.00 2.66
3998 4766 5.050295 GGTTATGATACTTTCGCAGCCTAAC 60.050 44.000 0.00 0.00 0.00 2.34
4008 4776 5.918608 TGAGCTCAGGGTTATGATACTTTC 58.081 41.667 13.74 0.00 0.00 2.62
4012 4780 6.599638 ACTTTTTGAGCTCAGGGTTATGATAC 59.400 38.462 17.43 0.00 0.00 2.24
4014 4782 5.574188 ACTTTTTGAGCTCAGGGTTATGAT 58.426 37.500 17.43 0.00 0.00 2.45
4121 4890 4.436050 CCTCGAATGTTTTTCCATCACGAG 60.436 45.833 16.32 16.32 43.25 4.18
4122 4891 3.435327 CCTCGAATGTTTTTCCATCACGA 59.565 43.478 0.00 0.00 34.72 4.35
4123 4892 3.435327 TCCTCGAATGTTTTTCCATCACG 59.565 43.478 0.00 0.00 0.00 4.35
4125 4894 4.009675 CCTCCTCGAATGTTTTTCCATCA 58.990 43.478 0.00 0.00 0.00 3.07
4130 4899 3.611766 GCCAACCTCCTCGAATGTTTTTC 60.612 47.826 0.00 0.00 0.00 2.29
4133 4902 1.202879 TGCCAACCTCCTCGAATGTTT 60.203 47.619 0.00 0.00 0.00 2.83
4142 4911 5.622346 TTTTGTATTTTTGCCAACCTCCT 57.378 34.783 0.00 0.00 0.00 3.69
4146 4915 8.616942 AGTGTTAATTTTGTATTTTTGCCAACC 58.383 29.630 0.00 0.00 0.00 3.77
4223 4993 1.147824 ATTCCTGATGCTCTGGGCG 59.852 57.895 0.00 0.00 45.43 6.13
4233 5003 6.962182 TCCATGAAGAAGTTACATTCCTGAT 58.038 36.000 0.00 0.00 0.00 2.90
4235 5005 7.452880 TTTCCATGAAGAAGTTACATTCCTG 57.547 36.000 0.00 0.00 0.00 3.86
4246 5016 3.365820 GCGTGCAAATTTCCATGAAGAAG 59.634 43.478 5.47 0.00 0.00 2.85
4254 5024 2.799412 GTTGAATGCGTGCAAATTTCCA 59.201 40.909 0.00 0.00 0.00 3.53
4256 5026 4.025813 ACAAGTTGAATGCGTGCAAATTTC 60.026 37.500 9.62 0.00 30.93 2.17
4320 5100 7.884354 ACATTTGAGTTTGGGAATGCATAAAAT 59.116 29.630 0.00 0.00 33.84 1.82
4327 5107 3.187022 GCAACATTTGAGTTTGGGAATGC 59.813 43.478 0.00 0.00 33.84 3.56
4328 5108 4.449743 CAGCAACATTTGAGTTTGGGAATG 59.550 41.667 0.00 0.00 36.00 2.67
4329 5109 4.634199 CAGCAACATTTGAGTTTGGGAAT 58.366 39.130 0.00 0.00 0.00 3.01
4330 5110 3.740764 GCAGCAACATTTGAGTTTGGGAA 60.741 43.478 0.00 0.00 0.00 3.97
4331 5111 2.224018 GCAGCAACATTTGAGTTTGGGA 60.224 45.455 0.00 0.00 0.00 4.37
4332 5112 2.137523 GCAGCAACATTTGAGTTTGGG 58.862 47.619 0.00 0.00 0.00 4.12
4333 5113 3.102052 AGCAGCAACATTTGAGTTTGG 57.898 42.857 0.00 0.00 0.00 3.28
4334 5114 4.365723 AGAAGCAGCAACATTTGAGTTTG 58.634 39.130 0.00 0.00 0.00 2.93
4335 5115 4.660789 AGAAGCAGCAACATTTGAGTTT 57.339 36.364 0.00 0.00 0.00 2.66
4336 5116 4.660789 AAGAAGCAGCAACATTTGAGTT 57.339 36.364 0.00 0.00 0.00 3.01
4337 5117 4.217118 CCTAAGAAGCAGCAACATTTGAGT 59.783 41.667 0.00 0.00 0.00 3.41
4338 5118 4.730657 CCTAAGAAGCAGCAACATTTGAG 58.269 43.478 0.00 0.00 0.00 3.02
4339 5119 3.057315 GCCTAAGAAGCAGCAACATTTGA 60.057 43.478 0.00 0.00 0.00 2.69
4340 5120 3.248266 GCCTAAGAAGCAGCAACATTTG 58.752 45.455 0.00 0.00 0.00 2.32
4341 5121 2.232208 GGCCTAAGAAGCAGCAACATTT 59.768 45.455 0.00 0.00 0.00 2.32
4342 5122 1.821136 GGCCTAAGAAGCAGCAACATT 59.179 47.619 0.00 0.00 0.00 2.71
4343 5123 1.005215 AGGCCTAAGAAGCAGCAACAT 59.995 47.619 1.29 0.00 0.00 2.71
4344 5124 0.401738 AGGCCTAAGAAGCAGCAACA 59.598 50.000 1.29 0.00 0.00 3.33
4345 5125 1.539157 AAGGCCTAAGAAGCAGCAAC 58.461 50.000 5.16 0.00 0.00 4.17
4346 5126 3.652057 ATAAGGCCTAAGAAGCAGCAA 57.348 42.857 5.16 0.00 0.00 3.91
4347 5127 3.454447 TGTATAAGGCCTAAGAAGCAGCA 59.546 43.478 5.16 0.00 0.00 4.41
4348 5128 4.073293 TGTATAAGGCCTAAGAAGCAGC 57.927 45.455 5.16 0.00 0.00 5.25
4349 5129 5.049129 GCATTGTATAAGGCCTAAGAAGCAG 60.049 44.000 5.16 0.00 37.62 4.24
4350 5130 4.821805 GCATTGTATAAGGCCTAAGAAGCA 59.178 41.667 5.16 0.00 37.62 3.91
4351 5131 4.821805 TGCATTGTATAAGGCCTAAGAAGC 59.178 41.667 5.16 3.93 42.60 3.86
4352 5132 6.942532 TTGCATTGTATAAGGCCTAAGAAG 57.057 37.500 5.16 0.00 42.60 2.85
4353 5133 6.889722 ACTTTGCATTGTATAAGGCCTAAGAA 59.110 34.615 19.78 0.00 42.60 2.52
4354 5134 6.318648 CACTTTGCATTGTATAAGGCCTAAGA 59.681 38.462 19.78 0.00 42.60 2.10
4355 5135 6.498304 CACTTTGCATTGTATAAGGCCTAAG 58.502 40.000 5.16 14.63 42.60 2.18
4356 5136 5.163561 GCACTTTGCATTGTATAAGGCCTAA 60.164 40.000 5.16 0.00 44.26 2.69
4357 5137 4.338118 GCACTTTGCATTGTATAAGGCCTA 59.662 41.667 5.16 0.00 44.26 3.93
4358 5138 3.131046 GCACTTTGCATTGTATAAGGCCT 59.869 43.478 0.00 0.00 44.26 5.19
4359 5139 3.447742 GCACTTTGCATTGTATAAGGCC 58.552 45.455 6.39 0.00 44.26 5.19
4372 5152 0.595095 CAACTCCCTGAGCACTTTGC 59.405 55.000 0.00 0.00 45.46 3.68
4373 5153 1.972872 ACAACTCCCTGAGCACTTTG 58.027 50.000 0.00 0.00 32.04 2.77
4374 5154 2.736670 AACAACTCCCTGAGCACTTT 57.263 45.000 0.00 0.00 32.04 2.66
4375 5155 2.736670 AAACAACTCCCTGAGCACTT 57.263 45.000 0.00 0.00 32.04 3.16
4376 5156 5.499004 TTATAAACAACTCCCTGAGCACT 57.501 39.130 0.00 0.00 32.04 4.40
4377 5157 6.569179 TTTTATAAACAACTCCCTGAGCAC 57.431 37.500 0.00 0.00 32.04 4.40
4378 5158 7.775053 ATTTTTATAAACAACTCCCTGAGCA 57.225 32.000 0.00 0.00 32.04 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.