Multiple sequence alignment - TraesCS4A01G238200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G238200 chr4A 100.000 6276 0 0 1 6276 547234151 547227876 0.000000e+00 11590
1 TraesCS4A01G238200 chr4A 93.679 617 37 2 1 617 585436190 585436804 0.000000e+00 922
2 TraesCS4A01G238200 chr4A 98.387 62 1 0 5656 5717 547228450 547228389 6.650000e-20 110
3 TraesCS4A01G238200 chr4A 98.387 62 1 0 5702 5763 547228496 547228435 6.650000e-20 110
4 TraesCS4A01G238200 chr4B 96.376 4249 146 3 1696 5936 73301913 73297665 0.000000e+00 6986
5 TraesCS4A01G238200 chr4B 82.454 986 90 26 735 1660 73302877 73301915 0.000000e+00 785
6 TraesCS4A01G238200 chr4B 97.135 384 10 1 5893 6276 73297665 73297283 0.000000e+00 647
7 TraesCS4A01G238200 chr4B 96.774 62 2 0 5656 5717 73297899 73297838 3.090000e-18 104
8 TraesCS4A01G238200 chr4D 94.783 4447 191 23 1308 5717 49859997 49864439 0.000000e+00 6889
9 TraesCS4A01G238200 chr4D 91.858 393 24 6 5885 6276 49865502 49865887 5.530000e-150 542
10 TraesCS4A01G238200 chr4D 85.572 402 13 9 764 1159 49859526 49859888 4.590000e-101 379
11 TraesCS4A01G238200 chr4D 92.040 201 11 2 5689 5884 49864365 49864565 1.720000e-70 278
12 TraesCS4A01G238200 chr3A 96.769 619 20 0 1 619 576203616 576204234 0.000000e+00 1033
13 TraesCS4A01G238200 chr3D 94.984 618 31 0 1 618 598900165 598899548 0.000000e+00 970
14 TraesCS4A01G238200 chr3D 93.861 619 38 0 1 619 388798482 388797864 0.000000e+00 933
15 TraesCS4A01G238200 chr1D 94.184 619 36 0 1 619 9581558 9580940 0.000000e+00 944
16 TraesCS4A01G238200 chr1D 93.861 619 38 0 1 619 467113013 467112395 0.000000e+00 933
17 TraesCS4A01G238200 chr2D 93.569 622 35 2 1 617 8330971 8330350 0.000000e+00 922
18 TraesCS4A01G238200 chr1A 93.387 620 39 2 1 619 480840382 480841000 0.000000e+00 917
19 TraesCS4A01G238200 chr7D 93.109 624 41 2 1 623 235372048 235372670 0.000000e+00 913


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G238200 chr4A 547227876 547234151 6275 True 11590.0 11590 100.00000 1 6276 1 chr4A.!!$R1 6275
1 TraesCS4A01G238200 chr4A 585436190 585436804 614 False 922.0 922 93.67900 1 617 1 chr4A.!!$F1 616
2 TraesCS4A01G238200 chr4B 73297283 73301913 4630 True 3816.5 6986 96.75550 1696 6276 2 chr4B.!!$R3 4580
3 TraesCS4A01G238200 chr4B 73301915 73302877 962 True 785.0 785 82.45400 735 1660 1 chr4B.!!$R2 925
4 TraesCS4A01G238200 chr4D 49859526 49865887 6361 False 2022.0 6889 91.06325 764 6276 4 chr4D.!!$F1 5512
5 TraesCS4A01G238200 chr3A 576203616 576204234 618 False 1033.0 1033 96.76900 1 619 1 chr3A.!!$F1 618
6 TraesCS4A01G238200 chr3D 598899548 598900165 617 True 970.0 970 94.98400 1 618 1 chr3D.!!$R2 617
7 TraesCS4A01G238200 chr3D 388797864 388798482 618 True 933.0 933 93.86100 1 619 1 chr3D.!!$R1 618
8 TraesCS4A01G238200 chr1D 9580940 9581558 618 True 944.0 944 94.18400 1 619 1 chr1D.!!$R1 618
9 TraesCS4A01G238200 chr1D 467112395 467113013 618 True 933.0 933 93.86100 1 619 1 chr1D.!!$R2 618
10 TraesCS4A01G238200 chr2D 8330350 8330971 621 True 922.0 922 93.56900 1 617 1 chr2D.!!$R1 616
11 TraesCS4A01G238200 chr1A 480840382 480841000 618 False 917.0 917 93.38700 1 619 1 chr1A.!!$F1 618
12 TraesCS4A01G238200 chr7D 235372048 235372670 622 False 913.0 913 93.10900 1 623 1 chr7D.!!$F1 622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
707 715 0.035056 TTGGAAGAAGCCTGCTAGCC 60.035 55.000 13.29 0.00 0.00 3.93 F
730 738 0.103026 CCATCAATCGGTCAGCGAGA 59.897 55.000 4.74 0.00 0.00 4.04 F
1846 1920 0.098376 GCTTCAGCTGATCCTTTGCG 59.902 55.000 19.04 0.38 38.21 4.85 F
2278 2355 0.029035 TTCTCCGAACTATCTCGCGC 59.971 55.000 0.00 0.00 37.51 6.86 F
2765 2842 0.322975 AATGAAGAGGAGTGTGCGCT 59.677 50.000 9.73 0.00 0.00 5.92 F
3592 3669 0.610687 ACTCTTACTGCACCAGAGGC 59.389 55.000 13.93 0.00 38.76 4.70 F
4765 4842 1.628846 TGTGGAAAGGTAGAAGAGGGC 59.371 52.381 0.00 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 1577 0.178992 CCTGGCTCCACAGTTTCCAA 60.179 55.000 0.00 0.00 36.75 3.53 R
2269 2346 0.744281 TGGAATCACAGCGCGAGATA 59.256 50.000 12.10 0.00 0.00 1.98 R
3694 3771 0.184933 TTGCTTGTACCAAGTGGCCT 59.815 50.000 3.32 0.00 39.32 5.19 R
3719 3796 2.044252 AGCAAGGCAGGCCATGAG 60.044 61.111 18.82 3.65 36.99 2.90 R
4682 4759 0.819259 GGCACAACACCAAGAGCTGA 60.819 55.000 0.00 0.00 0.00 4.26 R
4876 4953 3.138283 ACAACTCCATTGACCCTTTGAGA 59.862 43.478 0.00 0.00 41.23 3.27 R
5728 5860 0.033503 TGCGACCACTCCCATCTCTA 60.034 55.000 0.00 0.00 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
377 385 2.880890 CAGGCCTGATAACTTGCATACC 59.119 50.000 29.88 0.00 0.00 2.73
478 486 3.135348 CCAAGATGTATGGGAGAAGCAGA 59.865 47.826 0.00 0.00 34.15 4.26
598 606 6.647481 ACAGTTTTGCTTATATGACACACGTA 59.353 34.615 0.00 0.00 0.00 3.57
602 610 4.944048 TGCTTATATGACACACGTATGCT 58.056 39.130 0.00 0.00 33.39 3.79
619 627 6.924060 ACGTATGCTAAATATCACAGTCCTTC 59.076 38.462 0.00 0.00 0.00 3.46
623 631 6.946340 TGCTAAATATCACAGTCCTTCTTCA 58.054 36.000 0.00 0.00 0.00 3.02
624 632 7.394016 TGCTAAATATCACAGTCCTTCTTCAA 58.606 34.615 0.00 0.00 0.00 2.69
625 633 7.882791 TGCTAAATATCACAGTCCTTCTTCAAA 59.117 33.333 0.00 0.00 0.00 2.69
626 634 8.897752 GCTAAATATCACAGTCCTTCTTCAAAT 58.102 33.333 0.00 0.00 0.00 2.32
629 637 9.965902 AAATATCACAGTCCTTCTTCAAATACT 57.034 29.630 0.00 0.00 0.00 2.12
630 638 9.965902 AATATCACAGTCCTTCTTCAAATACTT 57.034 29.630 0.00 0.00 0.00 2.24
631 639 7.913674 ATCACAGTCCTTCTTCAAATACTTC 57.086 36.000 0.00 0.00 0.00 3.01
632 640 6.826668 TCACAGTCCTTCTTCAAATACTTCA 58.173 36.000 0.00 0.00 0.00 3.02
633 641 7.279615 TCACAGTCCTTCTTCAAATACTTCAA 58.720 34.615 0.00 0.00 0.00 2.69
634 642 7.773224 TCACAGTCCTTCTTCAAATACTTCAAA 59.227 33.333 0.00 0.00 0.00 2.69
635 643 8.405531 CACAGTCCTTCTTCAAATACTTCAAAA 58.594 33.333 0.00 0.00 0.00 2.44
636 644 9.136323 ACAGTCCTTCTTCAAATACTTCAAAAT 57.864 29.630 0.00 0.00 0.00 1.82
637 645 9.971922 CAGTCCTTCTTCAAATACTTCAAAATT 57.028 29.630 0.00 0.00 0.00 1.82
665 673 9.443283 CTTTGTTATCAAACAGATATGCTTAGC 57.557 33.333 0.00 0.00 45.99 3.09
666 674 8.504812 TTGTTATCAAACAGATATGCTTAGCA 57.495 30.769 10.09 10.09 45.99 3.49
667 675 7.919690 TGTTATCAAACAGATATGCTTAGCAC 58.080 34.615 9.82 0.00 40.14 4.40
668 676 7.012327 TGTTATCAAACAGATATGCTTAGCACC 59.988 37.037 9.82 1.78 40.14 5.01
669 677 5.102953 TCAAACAGATATGCTTAGCACCT 57.897 39.130 9.82 4.35 43.04 4.00
670 678 5.118990 TCAAACAGATATGCTTAGCACCTC 58.881 41.667 9.82 9.38 43.04 3.85
671 679 3.377346 ACAGATATGCTTAGCACCTCG 57.623 47.619 9.82 8.26 43.04 4.63
672 680 2.695666 ACAGATATGCTTAGCACCTCGT 59.304 45.455 9.82 8.83 43.04 4.18
673 681 3.243569 ACAGATATGCTTAGCACCTCGTC 60.244 47.826 9.82 3.68 43.04 4.20
674 682 3.005261 CAGATATGCTTAGCACCTCGTCT 59.995 47.826 9.82 5.98 43.04 4.18
675 683 3.639094 AGATATGCTTAGCACCTCGTCTT 59.361 43.478 9.82 0.00 43.04 3.01
676 684 4.827835 AGATATGCTTAGCACCTCGTCTTA 59.172 41.667 9.82 0.00 43.04 2.10
677 685 2.649331 TGCTTAGCACCTCGTCTTAC 57.351 50.000 1.39 0.00 31.71 2.34
678 686 1.203994 TGCTTAGCACCTCGTCTTACC 59.796 52.381 1.39 0.00 31.71 2.85
679 687 1.203994 GCTTAGCACCTCGTCTTACCA 59.796 52.381 0.00 0.00 0.00 3.25
680 688 2.877335 CTTAGCACCTCGTCTTACCAC 58.123 52.381 0.00 0.00 0.00 4.16
681 689 1.180029 TAGCACCTCGTCTTACCACC 58.820 55.000 0.00 0.00 0.00 4.61
682 690 1.445582 GCACCTCGTCTTACCACCG 60.446 63.158 0.00 0.00 0.00 4.94
683 691 1.214589 CACCTCGTCTTACCACCGG 59.785 63.158 0.00 0.00 0.00 5.28
684 692 1.228675 ACCTCGTCTTACCACCGGT 60.229 57.895 0.00 0.00 40.16 5.28
685 693 1.214589 CCTCGTCTTACCACCGGTG 59.785 63.158 28.26 28.26 36.19 4.94
686 694 1.445582 CTCGTCTTACCACCGGTGC 60.446 63.158 29.75 13.20 36.19 5.01
687 695 2.149803 CTCGTCTTACCACCGGTGCA 62.150 60.000 29.75 15.97 36.19 4.57
688 696 1.079405 CGTCTTACCACCGGTGCAT 60.079 57.895 29.75 20.76 36.19 3.96
689 697 0.672401 CGTCTTACCACCGGTGCATT 60.672 55.000 29.75 17.06 36.19 3.56
690 698 0.802494 GTCTTACCACCGGTGCATTG 59.198 55.000 29.75 17.65 36.19 2.82
691 699 0.322098 TCTTACCACCGGTGCATTGG 60.322 55.000 29.75 17.81 36.19 3.16
692 700 0.322098 CTTACCACCGGTGCATTGGA 60.322 55.000 29.75 9.46 36.19 3.53
693 701 0.110678 TTACCACCGGTGCATTGGAA 59.889 50.000 29.75 15.45 36.19 3.53
694 702 0.322098 TACCACCGGTGCATTGGAAG 60.322 55.000 29.75 14.99 36.19 3.46
695 703 1.303236 CCACCGGTGCATTGGAAGA 60.303 57.895 29.75 0.00 31.39 2.87
696 704 0.893270 CCACCGGTGCATTGGAAGAA 60.893 55.000 29.75 0.00 31.39 2.52
697 705 0.523072 CACCGGTGCATTGGAAGAAG 59.477 55.000 24.02 0.00 0.00 2.85
698 706 1.244019 ACCGGTGCATTGGAAGAAGC 61.244 55.000 6.12 0.00 0.00 3.86
699 707 1.508088 CGGTGCATTGGAAGAAGCC 59.492 57.895 0.00 0.00 0.00 4.35
700 708 0.962356 CGGTGCATTGGAAGAAGCCT 60.962 55.000 0.00 0.00 0.00 4.58
701 709 0.529378 GGTGCATTGGAAGAAGCCTG 59.471 55.000 0.00 0.00 0.00 4.85
702 710 0.108945 GTGCATTGGAAGAAGCCTGC 60.109 55.000 0.00 0.00 31.69 4.85
703 711 0.251474 TGCATTGGAAGAAGCCTGCT 60.251 50.000 0.00 0.00 32.15 4.24
704 712 1.004628 TGCATTGGAAGAAGCCTGCTA 59.995 47.619 0.00 0.00 32.15 3.49
705 713 1.674962 GCATTGGAAGAAGCCTGCTAG 59.325 52.381 0.00 0.00 0.00 3.42
706 714 1.674962 CATTGGAAGAAGCCTGCTAGC 59.325 52.381 8.10 8.10 0.00 3.42
707 715 0.035056 TTGGAAGAAGCCTGCTAGCC 60.035 55.000 13.29 0.00 0.00 3.93
708 716 1.153066 GGAAGAAGCCTGCTAGCCC 60.153 63.158 13.29 0.25 0.00 5.19
709 717 1.631071 GGAAGAAGCCTGCTAGCCCT 61.631 60.000 13.29 2.89 0.00 5.19
710 718 0.179059 GAAGAAGCCTGCTAGCCCTC 60.179 60.000 13.29 0.38 0.00 4.30
711 719 1.631071 AAGAAGCCTGCTAGCCCTCC 61.631 60.000 13.29 0.00 0.00 4.30
712 720 3.093172 AAGCCTGCTAGCCCTCCC 61.093 66.667 13.29 0.00 0.00 4.30
713 721 3.950861 AAGCCTGCTAGCCCTCCCA 62.951 63.158 13.29 0.00 0.00 4.37
714 722 3.174265 GCCTGCTAGCCCTCCCAT 61.174 66.667 13.29 0.00 0.00 4.00
715 723 3.155750 CCTGCTAGCCCTCCCATC 58.844 66.667 13.29 0.00 0.00 3.51
716 724 1.767672 CCTGCTAGCCCTCCCATCA 60.768 63.158 13.29 0.00 0.00 3.07
717 725 1.348008 CCTGCTAGCCCTCCCATCAA 61.348 60.000 13.29 0.00 0.00 2.57
718 726 0.769873 CTGCTAGCCCTCCCATCAAT 59.230 55.000 13.29 0.00 0.00 2.57
719 727 0.767375 TGCTAGCCCTCCCATCAATC 59.233 55.000 13.29 0.00 0.00 2.67
720 728 0.321122 GCTAGCCCTCCCATCAATCG 60.321 60.000 2.29 0.00 0.00 3.34
721 729 0.322975 CTAGCCCTCCCATCAATCGG 59.677 60.000 0.00 0.00 0.00 4.18
722 730 0.399949 TAGCCCTCCCATCAATCGGT 60.400 55.000 0.00 0.00 0.00 4.69
723 731 1.227973 GCCCTCCCATCAATCGGTC 60.228 63.158 0.00 0.00 0.00 4.79
724 732 1.983119 GCCCTCCCATCAATCGGTCA 61.983 60.000 0.00 0.00 0.00 4.02
725 733 0.107456 CCCTCCCATCAATCGGTCAG 59.893 60.000 0.00 0.00 0.00 3.51
726 734 0.533755 CCTCCCATCAATCGGTCAGC 60.534 60.000 0.00 0.00 0.00 4.26
727 735 0.877649 CTCCCATCAATCGGTCAGCG 60.878 60.000 0.00 0.00 0.00 5.18
728 736 1.143838 CCCATCAATCGGTCAGCGA 59.856 57.895 0.00 0.00 0.00 4.93
729 737 0.877649 CCCATCAATCGGTCAGCGAG 60.878 60.000 4.74 0.00 0.00 5.03
730 738 0.103026 CCATCAATCGGTCAGCGAGA 59.897 55.000 4.74 0.00 0.00 4.04
731 739 1.471501 CCATCAATCGGTCAGCGAGAA 60.472 52.381 4.74 0.00 0.00 2.87
732 740 1.857217 CATCAATCGGTCAGCGAGAAG 59.143 52.381 4.74 0.00 0.00 2.85
744 752 1.153745 CGAGAAGCCGTGGGAGAAG 60.154 63.158 0.00 0.00 0.00 2.85
746 754 2.172483 GAGAAGCCGTGGGAGAAGCA 62.172 60.000 0.00 0.00 0.00 3.91
769 780 2.359975 GCCCCAGTCCCAAGAACG 60.360 66.667 0.00 0.00 0.00 3.95
908 933 4.743975 GCCGGCCTATCTAGCGCC 62.744 72.222 18.11 6.64 36.74 6.53
911 936 4.743975 GGCCTATCTAGCGCCGCC 62.744 72.222 4.98 0.00 32.63 6.13
957 982 1.421646 ACCTTCACTTGGACTCTTGGG 59.578 52.381 0.00 0.00 0.00 4.12
1180 1205 5.521906 AAAAGAAAAACCTTCTCAGCTCC 57.478 39.130 0.00 0.00 0.00 4.70
1183 1208 1.902938 AAAACCTTCTCAGCTCCAGC 58.097 50.000 0.00 0.00 42.49 4.85
1191 1216 1.352017 TCTCAGCTCCAGCAATCCAAA 59.648 47.619 0.48 0.00 45.16 3.28
1196 1221 4.040706 TCAGCTCCAGCAATCCAAATTTTT 59.959 37.500 0.48 0.00 45.16 1.94
1197 1222 4.153475 CAGCTCCAGCAATCCAAATTTTTG 59.847 41.667 0.48 0.00 45.16 2.44
1199 1224 4.516321 GCTCCAGCAATCCAAATTTTTGTT 59.484 37.500 2.63 0.00 41.59 2.83
1200 1225 5.334337 GCTCCAGCAATCCAAATTTTTGTTC 60.334 40.000 2.63 0.00 41.59 3.18
1201 1226 5.927819 TCCAGCAATCCAAATTTTTGTTCT 58.072 33.333 2.63 0.00 36.45 3.01
1203 1228 6.260493 TCCAGCAATCCAAATTTTTGTTCTTG 59.740 34.615 2.63 4.46 36.45 3.02
1204 1229 6.038492 CCAGCAATCCAAATTTTTGTTCTTGT 59.962 34.615 2.63 0.00 36.45 3.16
1207 1251 6.906678 GCAATCCAAATTTTTGTTCTTGTGTC 59.093 34.615 2.63 0.00 36.45 3.67
1211 1255 5.005299 CCAAATTTTTGTTCTTGTGTCGGAC 59.995 40.000 0.00 0.00 36.45 4.79
1241 1285 2.918131 GCTGTTTGTGGAAATGCGAGTC 60.918 50.000 0.00 0.00 0.00 3.36
1244 1288 0.250124 TTGTGGAAATGCGAGTCGGT 60.250 50.000 15.52 0.00 0.00 4.69
1246 1290 2.032634 TGGAAATGCGAGTCGGTGC 61.033 57.895 15.52 0.00 0.00 5.01
1270 1314 3.610669 CGCCTCCTCTGCGCCTAT 61.611 66.667 4.18 0.00 46.01 2.57
1272 1316 2.030262 CCTCCTCTGCGCCTATGC 59.970 66.667 4.18 0.00 0.00 3.14
1273 1317 2.800541 CCTCCTCTGCGCCTATGCA 61.801 63.158 4.18 0.00 43.95 3.96
1279 1323 2.107750 TGCGCCTATGCAGAGCTC 59.892 61.111 5.27 5.27 40.62 4.09
1280 1324 2.420890 GCGCCTATGCAGAGCTCT 59.579 61.111 11.45 11.45 37.32 4.09
1281 1325 1.664333 GCGCCTATGCAGAGCTCTC 60.664 63.158 14.96 9.65 37.32 3.20
1282 1326 1.006337 CGCCTATGCAGAGCTCTCC 60.006 63.158 14.96 5.16 37.32 3.71
1283 1327 1.006337 GCCTATGCAGAGCTCTCCG 60.006 63.158 14.96 4.79 37.47 4.63
1284 1328 1.743321 GCCTATGCAGAGCTCTCCGT 61.743 60.000 14.96 9.32 37.47 4.69
1285 1329 1.610363 CCTATGCAGAGCTCTCCGTA 58.390 55.000 14.96 10.11 0.00 4.02
1286 1330 1.539388 CCTATGCAGAGCTCTCCGTAG 59.461 57.143 22.39 22.39 0.00 3.51
1287 1331 0.955178 TATGCAGAGCTCTCCGTAGC 59.045 55.000 14.96 14.62 43.11 3.58
1288 1332 1.743321 ATGCAGAGCTCTCCGTAGCC 61.743 60.000 14.96 0.00 43.86 3.93
1290 1334 1.671901 GCAGAGCTCTCCGTAGCCTT 61.672 60.000 14.96 0.00 43.86 4.35
1291 1335 1.681538 CAGAGCTCTCCGTAGCCTTA 58.318 55.000 14.96 0.00 43.86 2.69
1293 1337 2.034053 CAGAGCTCTCCGTAGCCTTAAG 59.966 54.545 14.96 0.00 43.86 1.85
1294 1338 1.338655 GAGCTCTCCGTAGCCTTAAGG 59.661 57.143 17.81 17.81 43.86 2.69
1307 1351 1.630878 CCTTAAGGCTTGGGACTCTGT 59.369 52.381 9.00 0.00 0.00 3.41
1308 1352 2.355209 CCTTAAGGCTTGGGACTCTGTC 60.355 54.545 9.00 0.00 0.00 3.51
1338 1382 0.736325 CTGGTTCACCCTAGTTCGCG 60.736 60.000 0.00 0.00 34.29 5.87
1341 1385 0.243095 GTTCACCCTAGTTCGCGAGT 59.757 55.000 9.59 3.24 0.00 4.18
1345 1389 0.807496 ACCCTAGTTCGCGAGTGTAC 59.193 55.000 9.59 4.45 0.00 2.90
1371 1415 5.524646 CCAAAGTTTGCACAGATTGAAATGT 59.475 36.000 10.25 0.00 0.00 2.71
1374 1418 5.284079 AGTTTGCACAGATTGAAATGTGTC 58.716 37.500 13.23 7.93 46.75 3.67
1394 1438 6.144175 GTGTCGAATCTACAGCTAAGATACC 58.856 44.000 10.35 6.06 33.32 2.73
1395 1439 5.241064 TGTCGAATCTACAGCTAAGATACCC 59.759 44.000 10.35 4.18 33.32 3.69
1427 1483 0.396974 TGCCTGCCTTGGTTGTTCTT 60.397 50.000 0.00 0.00 0.00 2.52
1443 1499 3.703001 TTCTTGAAGAACTAGCCCTGG 57.297 47.619 3.02 0.00 0.00 4.45
1444 1500 2.621070 TCTTGAAGAACTAGCCCTGGT 58.379 47.619 0.00 0.00 0.00 4.00
1463 1519 9.830975 GCCCTGGTATCACATAAATTTATTTTT 57.169 29.630 8.01 0.00 0.00 1.94
1539 1595 1.915141 ATTGGAAACTGTGGAGCCAG 58.085 50.000 0.00 0.00 38.45 4.85
1560 1616 5.010719 CCAGGCAATGCTCAGAATTATGATT 59.989 40.000 4.82 0.00 0.00 2.57
1561 1617 6.462487 CCAGGCAATGCTCAGAATTATGATTT 60.462 38.462 4.82 0.00 0.00 2.17
1593 1664 5.051641 CGGTTCGATTACTATTTCTGAGTGC 60.052 44.000 0.00 0.00 0.00 4.40
1610 1681 8.429493 TCTGAGTGCAAAATATCTCTGTATTG 57.571 34.615 0.00 0.00 0.00 1.90
1628 1699 7.333423 TCTGTATTGGACTTAACTAATGCACAC 59.667 37.037 0.00 0.00 32.49 3.82
1720 1794 5.701290 AGTTAGTACTTGGTGAGTGCATTTC 59.299 40.000 0.00 0.00 42.74 2.17
1725 1799 3.890756 ACTTGGTGAGTGCATTTCAATCA 59.109 39.130 5.56 5.32 46.20 2.57
1775 1849 2.710377 ACCAAAATGAGCTACATCGCA 58.290 42.857 0.00 0.00 38.38 5.10
1786 1860 4.810790 AGCTACATCGCATAAGTGATACC 58.189 43.478 0.00 0.00 42.86 2.73
1793 1867 1.421646 GCATAAGTGATACCAGCCCCT 59.578 52.381 0.00 0.00 0.00 4.79
1818 1892 6.344500 ACAGCTTTCTAGGATGTCAATACAG 58.656 40.000 0.00 0.00 39.49 2.74
1839 1913 3.442977 AGATTTGTTGGCTTCAGCTGATC 59.557 43.478 19.04 12.37 41.70 2.92
1846 1920 0.098376 GCTTCAGCTGATCCTTTGCG 59.902 55.000 19.04 0.38 38.21 4.85
1863 1937 7.481642 TCCTTTGCGTATTTAACTTGTTTGAA 58.518 30.769 0.00 0.00 0.00 2.69
1901 1975 8.087750 GCTTCTCATCTGCAATACTAGAAGTAT 58.912 37.037 18.81 0.00 42.86 2.12
1951 2028 4.428209 TGACGTTGCATCATTTTGTTGTT 58.572 34.783 0.00 0.00 0.00 2.83
1970 2047 9.689976 TTGTTGTTGTATTGATTTGGTTATCTG 57.310 29.630 0.00 0.00 0.00 2.90
1984 2061 4.263462 TGGTTATCTGTTTCAGCTCATGGT 60.263 41.667 0.00 0.00 0.00 3.55
2104 2181 2.808567 GCTAGCCTTGAAGATACTGGGC 60.809 54.545 2.29 0.00 39.82 5.36
2191 2268 2.925578 TCCAAGCTCAAATGCATTCG 57.074 45.000 13.38 0.51 34.99 3.34
2212 2289 3.446799 GCAAGCAATGTCAGTGTTGAAA 58.553 40.909 15.16 0.00 34.49 2.69
2269 2346 2.233305 TTAGCTCCCTTCTCCGAACT 57.767 50.000 0.00 0.00 0.00 3.01
2278 2355 0.029035 TTCTCCGAACTATCTCGCGC 59.971 55.000 0.00 0.00 37.51 6.86
2450 2527 4.033709 TGTGGAAGTTGGGGAATCAAAAA 58.966 39.130 0.00 0.00 0.00 1.94
2674 2751 2.629656 GGCTGCCATGCGTGTCTTT 61.630 57.895 15.17 0.00 0.00 2.52
2675 2752 1.305219 GGCTGCCATGCGTGTCTTTA 61.305 55.000 15.17 0.00 0.00 1.85
2764 2841 1.160137 AAATGAAGAGGAGTGTGCGC 58.840 50.000 0.00 0.00 0.00 6.09
2765 2842 0.322975 AATGAAGAGGAGTGTGCGCT 59.677 50.000 9.73 0.00 0.00 5.92
3082 3159 4.854924 TCCATGCCGGGACATGCG 62.855 66.667 19.59 14.71 44.98 4.73
3127 3204 2.397549 GCAAGAGGCACAACAATCAAC 58.602 47.619 0.00 0.00 43.97 3.18
3251 3328 6.371548 TCCAGATGTTGTTACTTATTCAGCAC 59.628 38.462 0.00 0.00 0.00 4.40
3286 3363 3.245229 TGTGCAAGATGGGTAAGTTGGAT 60.245 43.478 0.00 0.00 0.00 3.41
3511 3588 2.162408 GGTTACACAGGCTGAGCAATTC 59.838 50.000 23.66 3.73 0.00 2.17
3576 3653 8.198109 TGCCTCTTTCAACTGTATAATAGACTC 58.802 37.037 0.00 0.00 0.00 3.36
3592 3669 0.610687 ACTCTTACTGCACCAGAGGC 59.389 55.000 13.93 0.00 38.76 4.70
3655 3732 4.885907 AGATATGGCTGTTCTCCAAATGTG 59.114 41.667 0.00 0.00 37.13 3.21
3694 3771 2.172717 GCTTAGAGGGTTATGCAAGGGA 59.827 50.000 0.00 0.00 0.00 4.20
3735 3812 3.834799 GCTCATGGCCTGCCTTGC 61.835 66.667 16.85 8.75 40.01 4.01
3797 3874 4.864704 TTACTTCTGGGGATTTGCAAAC 57.135 40.909 15.41 8.51 0.00 2.93
4003 4080 3.991773 CCTGTTTGTTGAATGGCTTGATG 59.008 43.478 0.00 0.00 0.00 3.07
4102 4179 7.557358 TGTATTGCCTACAACTCAATGATGAAT 59.443 33.333 0.00 0.00 38.99 2.57
4114 4191 7.410174 ACTCAATGATGAATGGGTACCTAAAA 58.590 34.615 12.72 0.00 42.53 1.52
4177 4254 9.624373 GATATGCATCATAATGAGGTTTATCCT 57.376 33.333 0.19 0.00 38.36 3.24
4399 4476 5.575606 ACGCATTTATCCGGATAGATTAACG 59.424 40.000 25.10 25.10 0.00 3.18
4451 4528 5.619220 AGAAATCTAGGATGTCCAATGCTC 58.381 41.667 1.30 0.00 38.89 4.26
4579 4656 4.576873 TGTGATGTTTTACGTGACATGGTT 59.423 37.500 15.68 0.00 36.67 3.67
4600 4677 2.223971 TGAGAGTGGACTTGAACCGAAC 60.224 50.000 0.00 0.00 0.00 3.95
4605 4682 3.263425 AGTGGACTTGAACCGAACCATAT 59.737 43.478 0.00 0.00 0.00 1.78
4682 4759 3.795688 TCAGGCTGAAAGAGGAAATGT 57.204 42.857 16.28 0.00 34.07 2.71
4756 4833 7.456902 AGAGGTCTTAGTAAATGTGGAAAGGTA 59.543 37.037 0.00 0.00 0.00 3.08
4765 4842 1.628846 TGTGGAAAGGTAGAAGAGGGC 59.371 52.381 0.00 0.00 0.00 5.19
4915 4992 6.599244 TGGAGTTGTATGGATTGAAGATTGAC 59.401 38.462 0.00 0.00 0.00 3.18
4963 5040 2.035832 AGGTTTATGCAACAACCAGTGC 59.964 45.455 24.93 5.27 44.44 4.40
4964 5041 2.223923 GGTTTATGCAACAACCAGTGCA 60.224 45.455 20.47 0.21 41.97 4.57
5033 5110 2.285371 CGGCCGAACATTACAACATACG 60.285 50.000 24.07 0.00 0.00 3.06
5340 5421 8.208224 TGTTTGATCGATATGGTAGGTACAAAT 58.792 33.333 0.00 0.00 0.00 2.32
5344 5425 9.475620 TGATCGATATGGTAGGTACAAATCTAT 57.524 33.333 0.00 0.00 0.00 1.98
5346 5427 8.645814 TCGATATGGTAGGTACAAATCTATGT 57.354 34.615 0.00 0.00 37.32 2.29
5434 5517 8.905850 GGGTTCCGTTTTTAGATATTTTGGATA 58.094 33.333 0.00 0.00 0.00 2.59
5458 5541 5.160607 TCCTGTGTCTCCGACAATTAATT 57.839 39.130 0.00 0.00 44.49 1.40
5461 5544 5.006746 CCTGTGTCTCCGACAATTAATTAGC 59.993 44.000 0.00 0.00 44.49 3.09
5496 5579 1.522668 TTCATCTGCCCTGTTTGTCG 58.477 50.000 0.00 0.00 0.00 4.35
5689 5821 7.233144 AGGTAGCCATAGATATGCATAGAGATG 59.767 40.741 12.79 13.34 36.02 2.90
5690 5822 6.422344 AGCCATAGATATGCATAGAGATGG 57.578 41.667 25.43 25.43 36.49 3.51
5691 5823 5.307456 AGCCATAGATATGCATAGAGATGGG 59.693 44.000 28.01 19.29 34.43 4.00
5692 5824 5.306419 GCCATAGATATGCATAGAGATGGGA 59.694 44.000 28.01 4.58 34.43 4.37
5693 5825 6.518706 GCCATAGATATGCATAGAGATGGGAG 60.519 46.154 28.01 14.48 34.43 4.30
5694 5826 6.554228 CCATAGATATGCATAGAGATGGGAGT 59.446 42.308 23.62 3.14 33.26 3.85
5695 5827 5.936187 AGATATGCATAGAGATGGGAGTG 57.064 43.478 12.79 0.00 33.26 3.51
5696 5828 4.715792 AGATATGCATAGAGATGGGAGTGG 59.284 45.833 12.79 0.00 33.26 4.00
5697 5829 2.180946 TGCATAGAGATGGGAGTGGT 57.819 50.000 0.00 0.00 33.26 4.16
5698 5830 2.042464 TGCATAGAGATGGGAGTGGTC 58.958 52.381 0.00 0.00 33.26 4.02
5699 5831 1.000283 GCATAGAGATGGGAGTGGTCG 60.000 57.143 0.00 0.00 33.26 4.79
5700 5832 1.000283 CATAGAGATGGGAGTGGTCGC 60.000 57.143 0.00 0.00 36.17 5.19
5705 5837 4.776965 TGGGAGTGGTCGCAGATA 57.223 55.556 0.00 0.00 40.54 1.98
5706 5838 2.985001 TGGGAGTGGTCGCAGATAA 58.015 52.632 0.00 0.00 40.54 1.75
5707 5839 0.824109 TGGGAGTGGTCGCAGATAAG 59.176 55.000 0.00 0.00 40.54 1.73
5708 5840 0.530870 GGGAGTGGTCGCAGATAAGC 60.531 60.000 0.00 0.00 40.67 3.09
5709 5841 0.175760 GGAGTGGTCGCAGATAAGCA 59.824 55.000 0.00 0.00 40.67 3.91
5710 5842 1.565305 GAGTGGTCGCAGATAAGCAG 58.435 55.000 0.00 0.00 40.67 4.24
5711 5843 0.176680 AGTGGTCGCAGATAAGCAGG 59.823 55.000 0.00 0.00 40.67 4.85
5712 5844 0.108138 GTGGTCGCAGATAAGCAGGT 60.108 55.000 0.00 0.00 40.67 4.00
5713 5845 1.136305 GTGGTCGCAGATAAGCAGGTA 59.864 52.381 0.00 0.00 40.67 3.08
5714 5846 1.409064 TGGTCGCAGATAAGCAGGTAG 59.591 52.381 0.00 0.00 40.67 3.18
5715 5847 1.492720 GTCGCAGATAAGCAGGTAGC 58.507 55.000 0.00 0.00 40.67 3.58
5716 5848 1.870167 GTCGCAGATAAGCAGGTAGCC 60.870 57.143 0.00 0.00 42.29 3.93
5717 5849 4.422214 GTCGCAGATAAGCAGGTAGCCA 62.422 54.545 0.00 0.00 42.29 4.75
5718 5850 5.666250 GTCGCAGATAAGCAGGTAGCCAT 62.666 52.174 0.00 0.00 42.29 4.40
5719 5851 6.350398 GTCGCAGATAAGCAGGTAGCCATA 62.350 50.000 0.00 0.00 42.29 2.74
5726 5858 1.517242 GCAGGTAGCCATAGACATGC 58.483 55.000 0.00 0.00 44.84 4.06
5727 5859 2.916702 CAGGTAGCCATAGACATGCA 57.083 50.000 0.00 0.00 0.00 3.96
5728 5860 3.413846 CAGGTAGCCATAGACATGCAT 57.586 47.619 0.00 0.00 0.00 3.96
5729 5861 4.541973 CAGGTAGCCATAGACATGCATA 57.458 45.455 0.00 0.00 0.00 3.14
5730 5862 4.502016 CAGGTAGCCATAGACATGCATAG 58.498 47.826 0.00 0.00 0.00 2.23
5731 5863 4.221482 CAGGTAGCCATAGACATGCATAGA 59.779 45.833 0.00 0.00 0.00 1.98
5732 5864 4.465660 AGGTAGCCATAGACATGCATAGAG 59.534 45.833 0.00 0.00 0.00 2.43
5733 5865 4.464244 GGTAGCCATAGACATGCATAGAGA 59.536 45.833 0.00 0.00 0.00 3.10
5734 5866 5.128499 GGTAGCCATAGACATGCATAGAGAT 59.872 44.000 0.00 0.00 0.00 2.75
5850 5987 7.147863 TGGCACAGATAGTTATTTTCATTGCAT 60.148 33.333 0.00 0.00 0.00 3.96
5924 6997 5.235850 TGGCACAACCTGTCTCTAATTAA 57.764 39.130 0.00 0.00 40.22 1.40
6010 7126 3.397527 AGTCATGGTGGGTTGATCCTAT 58.602 45.455 0.00 0.00 36.25 2.57
6106 7222 4.464008 TCATAGTTTGATGGGGATGCTTC 58.536 43.478 0.00 0.00 0.00 3.86
6172 7288 8.684386 TGAAGACTTTGGTGTCATAATTTACA 57.316 30.769 0.00 0.00 39.27 2.41
6173 7289 8.783093 TGAAGACTTTGGTGTCATAATTTACAG 58.217 33.333 0.00 0.00 39.27 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
234 237 7.880059 AGTTATAAGGTCTTCGTTGTGTAAC 57.120 36.000 0.00 0.00 37.35 2.50
377 385 5.943416 TCAGGACAAAGTTACCATGGTATTG 59.057 40.000 25.12 25.21 0.00 1.90
478 486 1.442148 GTAGGCTCGCCCGAGAAAT 59.558 57.895 20.69 8.12 44.53 2.17
499 507 2.943978 CGCCTCCTCCCAAACGACT 61.944 63.158 0.00 0.00 0.00 4.18
567 575 8.023128 GTGTCATATAAGCAAAACTGTCACATT 58.977 33.333 0.00 0.00 0.00 2.71
598 606 7.568349 TGAAGAAGGACTGTGATATTTAGCAT 58.432 34.615 0.00 0.00 0.00 3.79
639 647 9.443283 GCTAAGCATATCTGTTTGATAACAAAG 57.557 33.333 0.00 0.00 44.97 2.77
640 648 8.955388 TGCTAAGCATATCTGTTTGATAACAAA 58.045 29.630 0.00 0.00 40.62 2.83
641 649 8.397906 GTGCTAAGCATATCTGTTTGATAACAA 58.602 33.333 0.00 0.00 41.33 2.83
642 650 7.012327 GGTGCTAAGCATATCTGTTTGATAACA 59.988 37.037 0.00 0.00 41.91 2.41
643 651 7.227512 AGGTGCTAAGCATATCTGTTTGATAAC 59.772 37.037 0.00 0.00 41.91 1.89
644 652 7.282585 AGGTGCTAAGCATATCTGTTTGATAA 58.717 34.615 0.00 0.00 41.91 1.75
645 653 6.830912 AGGTGCTAAGCATATCTGTTTGATA 58.169 36.000 0.00 0.00 41.91 2.15
646 654 5.688807 AGGTGCTAAGCATATCTGTTTGAT 58.311 37.500 0.00 0.00 41.91 2.57
647 655 5.102953 AGGTGCTAAGCATATCTGTTTGA 57.897 39.130 0.00 0.00 41.91 2.69
648 656 4.025396 CGAGGTGCTAAGCATATCTGTTTG 60.025 45.833 0.00 0.00 41.91 2.93
649 657 4.122776 CGAGGTGCTAAGCATATCTGTTT 58.877 43.478 0.00 0.00 41.91 2.83
650 658 3.133003 ACGAGGTGCTAAGCATATCTGTT 59.867 43.478 0.00 0.00 41.91 3.16
651 659 2.695666 ACGAGGTGCTAAGCATATCTGT 59.304 45.455 0.00 0.00 41.91 3.41
652 660 3.005261 AGACGAGGTGCTAAGCATATCTG 59.995 47.826 0.00 0.00 41.91 2.90
653 661 3.226777 AGACGAGGTGCTAAGCATATCT 58.773 45.455 0.00 0.00 41.91 1.98
654 662 3.651803 AGACGAGGTGCTAAGCATATC 57.348 47.619 0.00 0.00 41.91 1.63
655 663 4.262079 GGTAAGACGAGGTGCTAAGCATAT 60.262 45.833 0.00 0.00 41.91 1.78
656 664 3.067742 GGTAAGACGAGGTGCTAAGCATA 59.932 47.826 0.00 0.00 41.91 3.14
657 665 2.159085 GGTAAGACGAGGTGCTAAGCAT 60.159 50.000 0.00 0.00 41.91 3.79
658 666 1.203994 GGTAAGACGAGGTGCTAAGCA 59.796 52.381 0.00 0.00 35.60 3.91
659 667 1.203994 TGGTAAGACGAGGTGCTAAGC 59.796 52.381 0.00 0.00 0.00 3.09
660 668 2.416972 GGTGGTAAGACGAGGTGCTAAG 60.417 54.545 0.00 0.00 0.00 2.18
661 669 1.547372 GGTGGTAAGACGAGGTGCTAA 59.453 52.381 0.00 0.00 0.00 3.09
662 670 1.180029 GGTGGTAAGACGAGGTGCTA 58.820 55.000 0.00 0.00 0.00 3.49
663 671 1.874345 CGGTGGTAAGACGAGGTGCT 61.874 60.000 0.00 0.00 0.00 4.40
664 672 1.445582 CGGTGGTAAGACGAGGTGC 60.446 63.158 0.00 0.00 0.00 5.01
665 673 1.214589 CCGGTGGTAAGACGAGGTG 59.785 63.158 0.00 0.00 0.00 4.00
666 674 1.228675 ACCGGTGGTAAGACGAGGT 60.229 57.895 6.12 0.00 32.11 3.85
667 675 1.214589 CACCGGTGGTAAGACGAGG 59.785 63.158 27.57 0.00 32.11 4.63
668 676 1.445582 GCACCGGTGGTAAGACGAG 60.446 63.158 34.58 6.80 32.11 4.18
669 677 1.537814 ATGCACCGGTGGTAAGACGA 61.538 55.000 34.58 9.04 32.11 4.20
670 678 0.672401 AATGCACCGGTGGTAAGACG 60.672 55.000 34.58 8.40 32.11 4.18
671 679 0.802494 CAATGCACCGGTGGTAAGAC 59.198 55.000 34.58 17.82 32.11 3.01
672 680 0.322098 CCAATGCACCGGTGGTAAGA 60.322 55.000 34.58 0.37 32.11 2.10
673 681 0.322098 TCCAATGCACCGGTGGTAAG 60.322 55.000 34.58 10.83 32.11 2.34
674 682 0.110678 TTCCAATGCACCGGTGGTAA 59.889 50.000 34.58 9.52 32.11 2.85
675 683 0.322098 CTTCCAATGCACCGGTGGTA 60.322 55.000 34.58 16.14 32.11 3.25
676 684 1.603455 CTTCCAATGCACCGGTGGT 60.603 57.895 34.58 0.00 35.62 4.16
677 685 0.893270 TTCTTCCAATGCACCGGTGG 60.893 55.000 34.58 18.91 0.00 4.61
678 686 0.523072 CTTCTTCCAATGCACCGGTG 59.477 55.000 30.66 30.66 0.00 4.94
679 687 1.244019 GCTTCTTCCAATGCACCGGT 61.244 55.000 0.00 0.00 0.00 5.28
680 688 1.508088 GCTTCTTCCAATGCACCGG 59.492 57.895 0.00 0.00 0.00 5.28
681 689 0.962356 AGGCTTCTTCCAATGCACCG 60.962 55.000 0.00 0.00 0.00 4.94
682 690 0.529378 CAGGCTTCTTCCAATGCACC 59.471 55.000 0.00 0.00 0.00 5.01
683 691 0.108945 GCAGGCTTCTTCCAATGCAC 60.109 55.000 0.00 0.00 33.92 4.57
684 692 0.251474 AGCAGGCTTCTTCCAATGCA 60.251 50.000 0.00 0.00 36.15 3.96
685 693 1.674962 CTAGCAGGCTTCTTCCAATGC 59.325 52.381 0.00 0.00 0.00 3.56
686 694 1.674962 GCTAGCAGGCTTCTTCCAATG 59.325 52.381 10.63 0.00 0.00 2.82
687 695 1.409381 GGCTAGCAGGCTTCTTCCAAT 60.409 52.381 18.24 0.00 37.85 3.16
688 696 0.035056 GGCTAGCAGGCTTCTTCCAA 60.035 55.000 18.24 0.00 37.85 3.53
689 697 1.604378 GGCTAGCAGGCTTCTTCCA 59.396 57.895 18.24 0.00 37.85 3.53
690 698 1.153066 GGGCTAGCAGGCTTCTTCC 60.153 63.158 18.24 0.66 41.09 3.46
691 699 0.179059 GAGGGCTAGCAGGCTTCTTC 60.179 60.000 18.24 0.00 42.41 2.87
692 700 1.631071 GGAGGGCTAGCAGGCTTCTT 61.631 60.000 18.24 0.00 44.57 2.52
693 701 2.069430 GGAGGGCTAGCAGGCTTCT 61.069 63.158 18.24 3.49 44.57 2.85
694 702 2.508436 GGAGGGCTAGCAGGCTTC 59.492 66.667 18.24 5.05 44.46 3.86
695 703 3.093172 GGGAGGGCTAGCAGGCTT 61.093 66.667 18.24 0.00 41.09 4.35
696 704 3.728305 ATGGGAGGGCTAGCAGGCT 62.728 63.158 18.24 0.00 41.09 4.58
697 705 3.174265 ATGGGAGGGCTAGCAGGC 61.174 66.667 18.24 4.18 40.51 4.85
698 706 1.348008 TTGATGGGAGGGCTAGCAGG 61.348 60.000 18.24 0.00 0.00 4.85
699 707 0.769873 ATTGATGGGAGGGCTAGCAG 59.230 55.000 18.24 0.00 0.00 4.24
700 708 0.767375 GATTGATGGGAGGGCTAGCA 59.233 55.000 18.24 0.00 0.00 3.49
701 709 0.321122 CGATTGATGGGAGGGCTAGC 60.321 60.000 6.04 6.04 0.00 3.42
702 710 0.322975 CCGATTGATGGGAGGGCTAG 59.677 60.000 0.00 0.00 0.00 3.42
703 711 0.399949 ACCGATTGATGGGAGGGCTA 60.400 55.000 0.00 0.00 0.00 3.93
704 712 1.694169 ACCGATTGATGGGAGGGCT 60.694 57.895 0.00 0.00 0.00 5.19
705 713 1.227973 GACCGATTGATGGGAGGGC 60.228 63.158 0.00 0.00 0.00 5.19
706 714 0.107456 CTGACCGATTGATGGGAGGG 59.893 60.000 0.00 0.00 0.00 4.30
707 715 0.533755 GCTGACCGATTGATGGGAGG 60.534 60.000 0.00 0.00 0.00 4.30
708 716 0.877649 CGCTGACCGATTGATGGGAG 60.878 60.000 0.00 0.00 40.02 4.30
709 717 1.143838 CGCTGACCGATTGATGGGA 59.856 57.895 0.00 0.00 40.02 4.37
710 718 0.877649 CTCGCTGACCGATTGATGGG 60.878 60.000 0.00 0.00 46.31 4.00
711 719 0.103026 TCTCGCTGACCGATTGATGG 59.897 55.000 0.00 0.00 46.31 3.51
712 720 1.857217 CTTCTCGCTGACCGATTGATG 59.143 52.381 0.00 0.00 46.31 3.07
713 721 1.804372 GCTTCTCGCTGACCGATTGAT 60.804 52.381 0.00 0.00 46.31 2.57
714 722 0.458543 GCTTCTCGCTGACCGATTGA 60.459 55.000 0.00 0.00 46.31 2.57
715 723 1.424493 GGCTTCTCGCTGACCGATTG 61.424 60.000 0.00 0.00 46.31 2.67
716 724 1.153549 GGCTTCTCGCTGACCGATT 60.154 57.895 0.00 0.00 46.31 3.34
717 725 2.496817 GGCTTCTCGCTGACCGAT 59.503 61.111 0.00 0.00 46.31 4.18
724 732 3.764466 CTCCCACGGCTTCTCGCT 61.764 66.667 0.00 0.00 39.13 4.93
725 733 3.296709 TTCTCCCACGGCTTCTCGC 62.297 63.158 0.00 0.00 38.13 5.03
726 734 1.153745 CTTCTCCCACGGCTTCTCG 60.154 63.158 0.00 0.00 0.00 4.04
727 735 1.448717 GCTTCTCCCACGGCTTCTC 60.449 63.158 0.00 0.00 0.00 2.87
728 736 2.177594 CTGCTTCTCCCACGGCTTCT 62.178 60.000 0.00 0.00 0.00 2.85
729 737 1.743252 CTGCTTCTCCCACGGCTTC 60.743 63.158 0.00 0.00 0.00 3.86
730 738 2.348998 CTGCTTCTCCCACGGCTT 59.651 61.111 0.00 0.00 0.00 4.35
731 739 4.400961 GCTGCTTCTCCCACGGCT 62.401 66.667 0.00 0.00 32.83 5.52
759 767 4.697756 CCGCAGCCGTTCTTGGGA 62.698 66.667 0.00 0.00 0.00 4.37
1116 1141 1.902918 GCCAATCCTGGTGTGTGCA 60.903 57.895 0.00 0.00 45.53 4.57
1136 1161 3.706600 TTTAATTACCTCTGGCGGTGT 57.293 42.857 0.00 0.00 37.93 4.16
1159 1184 4.536765 TGGAGCTGAGAAGGTTTTTCTTT 58.463 39.130 0.00 0.00 0.00 2.52
1160 1185 4.140536 CTGGAGCTGAGAAGGTTTTTCTT 58.859 43.478 0.00 0.00 0.00 2.52
1161 1186 3.749226 CTGGAGCTGAGAAGGTTTTTCT 58.251 45.455 0.00 0.00 0.00 2.52
1162 1187 2.227626 GCTGGAGCTGAGAAGGTTTTTC 59.772 50.000 0.00 0.00 38.21 2.29
1163 1188 2.234143 GCTGGAGCTGAGAAGGTTTTT 58.766 47.619 0.00 0.00 38.21 1.94
1164 1189 1.143684 TGCTGGAGCTGAGAAGGTTTT 59.856 47.619 0.00 0.00 42.66 2.43
1165 1190 0.767375 TGCTGGAGCTGAGAAGGTTT 59.233 50.000 0.00 0.00 42.66 3.27
1166 1191 0.767375 TTGCTGGAGCTGAGAAGGTT 59.233 50.000 0.00 0.00 42.66 3.50
1167 1192 0.990374 ATTGCTGGAGCTGAGAAGGT 59.010 50.000 0.00 0.00 42.66 3.50
1175 1200 4.202388 ACAAAAATTTGGATTGCTGGAGCT 60.202 37.500 10.38 0.00 42.34 4.09
1176 1201 4.067192 ACAAAAATTTGGATTGCTGGAGC 58.933 39.130 10.38 0.00 42.34 4.70
1179 1204 6.038492 ACAAGAACAAAAATTTGGATTGCTGG 59.962 34.615 10.38 0.00 42.34 4.85
1180 1205 6.908284 CACAAGAACAAAAATTTGGATTGCTG 59.092 34.615 10.38 8.44 42.34 4.41
1183 1208 7.118724 CGACACAAGAACAAAAATTTGGATTG 58.881 34.615 10.38 12.33 42.34 2.67
1191 1216 3.790789 GCGTCCGACACAAGAACAAAAAT 60.791 43.478 0.00 0.00 0.00 1.82
1196 1221 1.142097 TGCGTCCGACACAAGAACA 59.858 52.632 0.00 0.00 0.00 3.18
1197 1222 0.874607 AGTGCGTCCGACACAAGAAC 60.875 55.000 13.69 0.00 40.59 3.01
1199 1224 1.299850 CAGTGCGTCCGACACAAGA 60.300 57.895 13.69 0.00 40.59 3.02
1200 1225 0.874175 TTCAGTGCGTCCGACACAAG 60.874 55.000 13.69 7.96 40.59 3.16
1201 1226 0.874175 CTTCAGTGCGTCCGACACAA 60.874 55.000 13.69 3.48 40.59 3.33
1203 1228 2.658707 GCTTCAGTGCGTCCGACAC 61.659 63.158 0.00 6.26 38.35 3.67
1204 1229 2.355837 GCTTCAGTGCGTCCGACA 60.356 61.111 0.00 0.00 0.00 4.35
1207 1251 1.498865 AAACAGCTTCAGTGCGTCCG 61.499 55.000 0.00 0.00 38.13 4.79
1211 1255 0.317269 CCACAAACAGCTTCAGTGCG 60.317 55.000 0.00 0.00 38.13 5.34
1255 1299 2.030262 GCATAGGCGCAGAGGAGG 59.970 66.667 10.83 0.00 0.00 4.30
1256 1300 2.817424 TGCATAGGCGCAGAGGAG 59.183 61.111 10.83 0.00 45.35 3.69
1265 1309 1.006337 CGGAGAGCTCTGCATAGGC 60.006 63.158 31.26 11.48 41.68 3.93
1267 1311 1.068610 GCTACGGAGAGCTCTGCATAG 60.069 57.143 27.79 27.79 39.55 2.23
1269 1313 1.739049 GCTACGGAGAGCTCTGCAT 59.261 57.895 31.26 21.73 39.55 3.96
1270 1314 2.418910 GGCTACGGAGAGCTCTGCA 61.419 63.158 31.26 14.67 42.43 4.41
1272 1316 1.681538 TAAGGCTACGGAGAGCTCTG 58.318 55.000 23.91 10.55 42.43 3.35
1273 1317 2.303175 CTTAAGGCTACGGAGAGCTCT 58.697 52.381 18.28 18.28 42.43 4.09
1274 1318 1.338655 CCTTAAGGCTACGGAGAGCTC 59.661 57.143 9.00 5.27 42.43 4.09
1275 1319 1.404843 CCTTAAGGCTACGGAGAGCT 58.595 55.000 9.00 0.00 42.43 4.09
1276 1320 3.969995 CCTTAAGGCTACGGAGAGC 57.030 57.895 9.00 0.00 42.05 4.09
1287 1331 1.630878 ACAGAGTCCCAAGCCTTAAGG 59.369 52.381 17.81 17.81 38.53 2.69
1288 1332 2.355209 GGACAGAGTCCCAAGCCTTAAG 60.355 54.545 4.85 0.00 46.19 1.85
1290 1334 1.276622 GGACAGAGTCCCAAGCCTTA 58.723 55.000 4.85 0.00 46.19 2.69
1291 1335 2.070639 GGACAGAGTCCCAAGCCTT 58.929 57.895 4.85 0.00 46.19 4.35
1300 1344 5.552178 ACCAGTAAAAATCAGGACAGAGTC 58.448 41.667 0.00 0.00 0.00 3.36
1302 1346 5.997746 TGAACCAGTAAAAATCAGGACAGAG 59.002 40.000 0.00 0.00 0.00 3.35
1303 1347 5.763204 GTGAACCAGTAAAAATCAGGACAGA 59.237 40.000 0.00 0.00 0.00 3.41
1307 1351 4.105697 AGGGTGAACCAGTAAAAATCAGGA 59.894 41.667 1.16 0.00 43.89 3.86
1308 1352 4.407365 AGGGTGAACCAGTAAAAATCAGG 58.593 43.478 1.16 0.00 43.89 3.86
1309 1353 6.238648 ACTAGGGTGAACCAGTAAAAATCAG 58.761 40.000 1.16 0.00 43.89 2.90
1310 1354 6.195600 ACTAGGGTGAACCAGTAAAAATCA 57.804 37.500 1.16 0.00 43.89 2.57
1311 1355 6.128363 CGAACTAGGGTGAACCAGTAAAAATC 60.128 42.308 1.16 0.00 43.89 2.17
1312 1356 5.704053 CGAACTAGGGTGAACCAGTAAAAAT 59.296 40.000 1.16 0.00 43.89 1.82
1313 1357 5.058490 CGAACTAGGGTGAACCAGTAAAAA 58.942 41.667 1.16 0.00 43.89 1.94
1317 1361 1.547372 GCGAACTAGGGTGAACCAGTA 59.453 52.381 1.16 0.00 43.89 2.74
1322 1366 0.243095 ACTCGCGAACTAGGGTGAAC 59.757 55.000 11.33 0.00 0.00 3.18
1338 1382 1.332375 TGCAAACTTTGGCGTACACTC 59.668 47.619 3.69 0.00 0.00 3.51
1341 1385 1.064803 CTGTGCAAACTTTGGCGTACA 59.935 47.619 3.69 0.00 0.00 2.90
1345 1389 1.788308 CAATCTGTGCAAACTTTGGCG 59.212 47.619 3.69 0.00 0.00 5.69
1347 1391 5.524646 ACATTTCAATCTGTGCAAACTTTGG 59.475 36.000 3.69 0.00 0.00 3.28
1371 1415 5.241064 GGGTATCTTAGCTGTAGATTCGACA 59.759 44.000 15.67 0.00 34.35 4.35
1374 1418 5.707242 TGGGTATCTTAGCTGTAGATTCG 57.293 43.478 15.67 0.00 34.35 3.34
1394 1438 5.796424 AGGCAGGCAATATCTTTTAATGG 57.204 39.130 0.00 0.00 0.00 3.16
1395 1439 5.987347 CCAAGGCAGGCAATATCTTTTAATG 59.013 40.000 0.00 0.00 0.00 1.90
1427 1483 3.451178 GTGATACCAGGGCTAGTTCTTCA 59.549 47.826 0.00 0.00 0.00 3.02
1521 1577 0.178992 CCTGGCTCCACAGTTTCCAA 60.179 55.000 0.00 0.00 36.75 3.53
1539 1595 7.781548 AAAAATCATAATTCTGAGCATTGCC 57.218 32.000 4.70 0.00 0.00 4.52
1584 1654 8.886719 CAATACAGAGATATTTTGCACTCAGAA 58.113 33.333 2.98 0.00 32.59 3.02
1585 1655 7.496920 CCAATACAGAGATATTTTGCACTCAGA 59.503 37.037 2.98 0.00 32.59 3.27
1610 1681 5.941948 ACTTGTGTGCATTAGTTAAGTCC 57.058 39.130 0.00 0.00 0.00 3.85
1628 1699 4.836125 AGACATTACCACAAGCAACTTG 57.164 40.909 5.80 5.80 45.85 3.16
1666 1737 7.906527 GCAGGAAAATACAAAAATGATGAATGC 59.093 33.333 0.00 0.00 0.00 3.56
1685 1756 6.708949 CACCAAGTACTAACTTAAGCAGGAAA 59.291 38.462 1.29 0.00 44.28 3.13
1701 1774 4.829064 TTGAAATGCACTCACCAAGTAC 57.171 40.909 0.00 0.00 36.07 2.73
1725 1799 6.705825 GCCAACAAGAAATCAACCAAGTTATT 59.294 34.615 0.00 0.00 0.00 1.40
1727 1801 5.127845 TGCCAACAAGAAATCAACCAAGTTA 59.872 36.000 0.00 0.00 0.00 2.24
1772 1846 1.512926 GGGCTGGTATCACTTATGCG 58.487 55.000 0.00 0.00 0.00 4.73
1775 1849 3.904339 CTGTAGGGGCTGGTATCACTTAT 59.096 47.826 0.00 0.00 0.00 1.73
1786 1860 1.139853 CCTAGAAAGCTGTAGGGGCTG 59.860 57.143 8.58 0.00 40.19 4.85
1793 1867 7.342026 TCTGTATTGACATCCTAGAAAGCTGTA 59.658 37.037 0.00 0.00 34.24 2.74
1818 1892 3.428589 GGATCAGCTGAAGCCAACAAATC 60.429 47.826 25.78 13.95 43.38 2.17
1839 1913 7.687005 TTCAAACAAGTTAAATACGCAAAGG 57.313 32.000 0.00 0.00 0.00 3.11
1863 1937 6.071221 TGCAGATGAGAAGCAACCAATAAAAT 60.071 34.615 0.00 0.00 34.97 1.82
1906 1980 2.504681 GGCAAAACTGCATCGGCG 60.505 61.111 0.00 0.00 45.35 6.46
1922 1996 3.837213 ATGATGCAACGTCAAAAGAGG 57.163 42.857 0.00 0.00 0.00 3.69
1951 2028 8.243426 GCTGAAACAGATAACCAAATCAATACA 58.757 33.333 2.81 0.00 32.44 2.29
1970 2047 3.141398 TCTCAACACCATGAGCTGAAAC 58.859 45.455 0.00 0.00 45.21 2.78
1984 2061 4.221482 ACACTGATGATGCTACTCTCAACA 59.779 41.667 0.00 0.00 0.00 3.33
2191 2268 2.780065 TCAACACTGACATTGCTTGC 57.220 45.000 0.00 0.00 0.00 4.01
2212 2289 2.440796 CCCGCCATGGCAAGATGT 60.441 61.111 34.93 0.00 42.06 3.06
2269 2346 0.744281 TGGAATCACAGCGCGAGATA 59.256 50.000 12.10 0.00 0.00 1.98
2476 2553 2.116556 GGGAACTTCCGGGCCAAA 59.883 61.111 4.39 0.00 37.43 3.28
2494 2571 7.094377 ACAATATTACAAGTGGTGACATCCAAC 60.094 37.037 0.00 0.00 46.14 3.77
2674 2751 9.434275 TCTACACCATTCTTCTCCATATCTTTA 57.566 33.333 0.00 0.00 0.00 1.85
2675 2752 8.324191 TCTACACCATTCTTCTCCATATCTTT 57.676 34.615 0.00 0.00 0.00 2.52
2759 2836 0.875059 AGCAAAAGGTAAGAGCGCAC 59.125 50.000 11.47 2.25 0.00 5.34
2760 2837 1.156736 GAGCAAAAGGTAAGAGCGCA 58.843 50.000 11.47 0.00 0.00 6.09
2848 2925 6.240894 AGCAAGTTTCATCTTACCTTCATCA 58.759 36.000 0.00 0.00 0.00 3.07
2881 2958 5.867716 GCTCTGTTTCAGCATTTCATTGAAT 59.132 36.000 0.00 0.00 36.82 2.57
3101 3178 1.677576 TGTTGTGCCTCTTGCTTTCAG 59.322 47.619 0.00 0.00 42.00 3.02
3251 3328 5.278315 CCATCTTGCACATACCATTGATCAG 60.278 44.000 0.00 0.00 0.00 2.90
3377 3454 1.112113 GCTTCTCCGACATACCCAGA 58.888 55.000 0.00 0.00 0.00 3.86
3511 3588 8.722480 TCTTCATCCTAGACATGTATTGTTTG 57.278 34.615 0.00 0.00 39.18 2.93
3576 3653 2.119801 ATTGCCTCTGGTGCAGTAAG 57.880 50.000 0.00 0.00 40.35 2.34
3655 3732 8.778358 CCTCTAAGCAAATTCTTATATGTGTCC 58.222 37.037 0.00 0.00 0.00 4.02
3666 3743 5.509498 TGCATAACCCTCTAAGCAAATTCT 58.491 37.500 0.00 0.00 0.00 2.40
3694 3771 0.184933 TTGCTTGTACCAAGTGGCCT 59.815 50.000 3.32 0.00 39.32 5.19
3719 3796 2.044252 AGCAAGGCAGGCCATGAG 60.044 61.111 18.82 3.65 36.99 2.90
3735 3812 3.877559 TCAATGGCAGAAGGTATGTCAG 58.122 45.455 0.00 0.00 35.40 3.51
3797 3874 3.380004 AGAGCTTCATCTAGAGTTCCGTG 59.620 47.826 0.00 0.00 0.00 4.94
3850 3927 8.038944 GTGTAAGTATGGATGTCAGGTAGAAAA 58.961 37.037 0.00 0.00 0.00 2.29
4003 4080 3.156288 ACCTTAACTTGGCCTTCCTTC 57.844 47.619 3.32 0.00 0.00 3.46
4102 4179 3.589735 TCATTCCTGCTTTTAGGTACCCA 59.410 43.478 8.74 0.00 38.99 4.51
4149 4226 9.624373 GATAAACCTCATTATGATGCATATCCT 57.376 33.333 0.00 0.00 33.14 3.24
4177 4254 4.412199 AGAATGTTATAGCTGGCTGGGTTA 59.588 41.667 5.25 0.00 0.00 2.85
4264 4341 3.024547 GTTTGGCCTAATCCCTTTCCTC 58.975 50.000 3.32 0.00 0.00 3.71
4451 4528 3.593096 TCATGCAGTTGAAGAGCTGTAG 58.407 45.455 0.00 0.00 35.33 2.74
4579 4656 1.699730 TCGGTTCAAGTCCACTCTCA 58.300 50.000 0.00 0.00 0.00 3.27
4682 4759 0.819259 GGCACAACACCAAGAGCTGA 60.819 55.000 0.00 0.00 0.00 4.26
4756 4833 5.045286 ACAGAAAACTATGATGCCCTCTTCT 60.045 40.000 0.00 0.00 0.00 2.85
4811 4888 5.064834 GCATTAGGGTAGTGAAAGTAGCAAC 59.935 44.000 0.00 0.00 41.89 4.17
4876 4953 3.138283 ACAACTCCATTGACCCTTTGAGA 59.862 43.478 0.00 0.00 41.23 3.27
4963 5040 8.768019 TCATAAAGATCTAACGCATCAGAAATG 58.232 33.333 0.00 0.00 0.00 2.32
4964 5041 8.893219 TCATAAAGATCTAACGCATCAGAAAT 57.107 30.769 0.00 0.00 0.00 2.17
5072 5149 5.730296 TTCAGTAGTTTCTCTCCTTCCAG 57.270 43.478 0.00 0.00 0.00 3.86
5308 5385 6.813649 CCTACCATATCGATCAAACATACCAG 59.186 42.308 0.00 0.00 0.00 4.00
5340 5421 7.362056 GGCAGAAGCAAGAAAAATACACATAGA 60.362 37.037 0.00 0.00 44.61 1.98
5344 5425 4.584325 AGGCAGAAGCAAGAAAAATACACA 59.416 37.500 0.00 0.00 44.61 3.72
5346 5427 4.584325 ACAGGCAGAAGCAAGAAAAATACA 59.416 37.500 0.00 0.00 44.61 2.29
5461 5544 7.489113 GGGCAGATGAAAAACATAATACAACAG 59.511 37.037 0.00 0.00 39.56 3.16
5527 5611 5.622346 AAACCCTTTTTCAGCAAATACCA 57.378 34.783 0.00 0.00 0.00 3.25
5568 5652 9.154847 TCAACATATGAGATGTTTCTTACACTG 57.845 33.333 10.38 0.00 39.94 3.66
5638 5724 5.753921 GCTTATCTATAACCGCTCACAAGTT 59.246 40.000 0.00 0.00 0.00 2.66
5689 5821 0.530870 GCTTATCTGCGACCACTCCC 60.531 60.000 0.00 0.00 0.00 4.30
5690 5822 0.175760 TGCTTATCTGCGACCACTCC 59.824 55.000 0.00 0.00 35.36 3.85
5691 5823 1.565305 CTGCTTATCTGCGACCACTC 58.435 55.000 0.00 0.00 35.36 3.51
5692 5824 0.176680 CCTGCTTATCTGCGACCACT 59.823 55.000 0.00 0.00 35.36 4.00
5693 5825 0.108138 ACCTGCTTATCTGCGACCAC 60.108 55.000 0.00 0.00 35.36 4.16
5694 5826 1.409064 CTACCTGCTTATCTGCGACCA 59.591 52.381 0.00 0.00 35.36 4.02
5695 5827 1.870167 GCTACCTGCTTATCTGCGACC 60.870 57.143 0.00 0.00 38.95 4.79
5696 5828 1.492720 GCTACCTGCTTATCTGCGAC 58.507 55.000 0.00 0.00 38.95 5.19
5697 5829 0.389391 GGCTACCTGCTTATCTGCGA 59.611 55.000 0.00 0.00 42.39 5.10
5698 5830 0.104855 TGGCTACCTGCTTATCTGCG 59.895 55.000 0.00 0.00 42.39 5.18
5699 5831 2.557920 ATGGCTACCTGCTTATCTGC 57.442 50.000 0.00 0.00 42.39 4.26
5700 5832 4.281941 TGTCTATGGCTACCTGCTTATCTG 59.718 45.833 0.00 0.00 42.39 2.90
5701 5833 4.483950 TGTCTATGGCTACCTGCTTATCT 58.516 43.478 0.00 0.00 42.39 1.98
5702 5834 4.873746 TGTCTATGGCTACCTGCTTATC 57.126 45.455 0.00 0.00 42.39 1.75
5703 5835 4.564406 GCATGTCTATGGCTACCTGCTTAT 60.564 45.833 0.00 0.00 42.39 1.73
5704 5836 3.244215 GCATGTCTATGGCTACCTGCTTA 60.244 47.826 0.00 0.00 42.39 3.09
5705 5837 2.486191 GCATGTCTATGGCTACCTGCTT 60.486 50.000 0.00 0.00 42.39 3.91
5706 5838 1.071385 GCATGTCTATGGCTACCTGCT 59.929 52.381 0.00 0.00 42.39 4.24
5707 5839 1.202687 TGCATGTCTATGGCTACCTGC 60.203 52.381 0.00 0.00 37.64 4.85
5708 5840 2.916702 TGCATGTCTATGGCTACCTG 57.083 50.000 0.00 0.00 34.79 4.00
5709 5841 4.420206 TCTATGCATGTCTATGGCTACCT 58.580 43.478 10.16 0.00 34.79 3.08
5710 5842 4.464244 TCTCTATGCATGTCTATGGCTACC 59.536 45.833 10.16 0.00 34.79 3.18
5711 5843 5.651387 TCTCTATGCATGTCTATGGCTAC 57.349 43.478 10.16 0.00 34.79 3.58
5712 5844 5.128335 CCATCTCTATGCATGTCTATGGCTA 59.872 44.000 10.16 0.00 34.79 3.93
5713 5845 4.081031 CCATCTCTATGCATGTCTATGGCT 60.081 45.833 10.16 0.00 34.79 4.75
5714 5846 4.190001 CCATCTCTATGCATGTCTATGGC 58.810 47.826 10.16 0.00 34.79 4.40
5715 5847 4.468868 TCCCATCTCTATGCATGTCTATGG 59.531 45.833 10.16 15.87 34.79 2.74
5716 5848 5.187381 ACTCCCATCTCTATGCATGTCTATG 59.813 44.000 10.16 8.04 37.36 2.23
5717 5849 5.187381 CACTCCCATCTCTATGCATGTCTAT 59.813 44.000 10.16 0.00 0.00 1.98
5718 5850 4.525874 CACTCCCATCTCTATGCATGTCTA 59.474 45.833 10.16 0.00 0.00 2.59
5719 5851 3.324268 CACTCCCATCTCTATGCATGTCT 59.676 47.826 10.16 0.00 0.00 3.41
5720 5852 3.556633 CCACTCCCATCTCTATGCATGTC 60.557 52.174 10.16 0.00 0.00 3.06
5721 5853 2.371179 CCACTCCCATCTCTATGCATGT 59.629 50.000 10.16 0.00 0.00 3.21
5722 5854 2.371179 ACCACTCCCATCTCTATGCATG 59.629 50.000 10.16 0.00 0.00 4.06
5723 5855 2.636893 GACCACTCCCATCTCTATGCAT 59.363 50.000 3.79 3.79 0.00 3.96
5724 5856 2.042464 GACCACTCCCATCTCTATGCA 58.958 52.381 0.00 0.00 0.00 3.96
5725 5857 1.000283 CGACCACTCCCATCTCTATGC 60.000 57.143 0.00 0.00 0.00 3.14
5726 5858 1.000283 GCGACCACTCCCATCTCTATG 60.000 57.143 0.00 0.00 0.00 2.23
5727 5859 1.333177 GCGACCACTCCCATCTCTAT 58.667 55.000 0.00 0.00 0.00 1.98
5728 5860 0.033503 TGCGACCACTCCCATCTCTA 60.034 55.000 0.00 0.00 0.00 2.43
5729 5861 1.305297 TGCGACCACTCCCATCTCT 60.305 57.895 0.00 0.00 0.00 3.10
5730 5862 1.142748 CTGCGACCACTCCCATCTC 59.857 63.158 0.00 0.00 0.00 2.75
5731 5863 0.689080 ATCTGCGACCACTCCCATCT 60.689 55.000 0.00 0.00 0.00 2.90
5732 5864 1.040646 TATCTGCGACCACTCCCATC 58.959 55.000 0.00 0.00 0.00 3.51
5733 5865 1.414181 CTTATCTGCGACCACTCCCAT 59.586 52.381 0.00 0.00 0.00 4.00
5734 5866 0.824109 CTTATCTGCGACCACTCCCA 59.176 55.000 0.00 0.00 0.00 4.37
5924 6997 5.069516 GTGACCCATAAAATCCAATGATGCT 59.930 40.000 0.00 0.00 0.00 3.79
6172 7288 7.716998 TCATCTTAGTCTGTCTTTTGCTTTTCT 59.283 33.333 0.00 0.00 0.00 2.52
6173 7289 7.865707 TCATCTTAGTCTGTCTTTTGCTTTTC 58.134 34.615 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.