Multiple sequence alignment - TraesCS4A01G238100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G238100 chr4A 100.000 2759 0 0 643 3401 547204934 547202176 0.000000e+00 5096.0
1 TraesCS4A01G238100 chr4A 100.000 312 0 0 1 312 547205576 547205265 8.180000e-161 577.0
2 TraesCS4A01G238100 chr4A 83.951 324 34 7 1 312 471711247 471711564 9.230000e-76 294.0
3 TraesCS4A01G238100 chr4A 97.059 34 1 0 1968 2001 96107588 96107621 1.320000e-04 58.4
4 TraesCS4A01G238100 chr4B 93.392 2043 103 13 792 2814 73469867 73471897 0.000000e+00 2996.0
5 TraesCS4A01G238100 chr4D 92.264 2107 111 18 746 2830 49889307 49891383 0.000000e+00 2940.0
6 TraesCS4A01G238100 chr4D 82.950 522 58 19 2884 3400 49891403 49891898 3.110000e-120 442.0
7 TraesCS4A01G238100 chr2D 85.494 324 29 5 1 312 250625927 250626244 4.230000e-84 322.0
8 TraesCS4A01G238100 chr2D 83.489 321 39 11 1 312 576207833 576207518 1.540000e-73 287.0
9 TraesCS4A01G238100 chr2D 82.609 322 38 7 1 310 476825539 476825854 5.590000e-68 268.0
10 TraesCS4A01G238100 chr2B 84.068 295 32 8 27 312 582296838 582297126 1.560000e-68 270.0
11 TraesCS4A01G238100 chr6A 78.193 321 58 11 1 312 15737789 15737472 9.630000e-46 195.0
12 TraesCS4A01G238100 chr3D 78.395 324 46 8 1 312 362059320 362059631 4.480000e-44 189.0
13 TraesCS4A01G238100 chr6D 75.962 312 54 7 1 304 441527636 441527338 1.270000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G238100 chr4A 547202176 547205576 3400 True 2836.5 5096 100.000 1 3401 2 chr4A.!!$R1 3400
1 TraesCS4A01G238100 chr4B 73469867 73471897 2030 False 2996.0 2996 93.392 792 2814 1 chr4B.!!$F1 2022
2 TraesCS4A01G238100 chr4D 49889307 49891898 2591 False 1691.0 2940 87.607 746 3400 2 chr4D.!!$F1 2654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 81 0.030235 CATCGTGGCCTCGTCGAATA 59.970 55.0 25.1 6.79 37.16 1.75 F
311 312 0.247460 CTGCGGAACTGGTGAGATCA 59.753 55.0 0.0 0.00 0.00 2.92 F
678 679 0.605589 GCGGGGCTGACAAGTAAGTT 60.606 55.0 0.0 0.00 0.00 2.66 F
1894 1920 0.796312 CAGTTCACCCAATTCGACGG 59.204 55.0 0.0 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1065 1079 1.447643 GAGTATGGTGGCGGATGCT 59.552 57.895 0.00 0.00 42.25 3.79 R
2214 2243 0.801067 CAAGGTAGCACGCGTAGACC 60.801 60.000 22.28 22.28 0.00 3.85 R
2266 2295 1.002746 TGCGGTAGAATGCCAGCAA 60.003 52.632 0.00 0.00 43.25 3.91 R
3210 3250 0.179179 GCAGCGCCTTTCTGATGAAC 60.179 55.000 2.29 0.00 33.54 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.691342 CCGACGCTGAGTGGGGAA 61.691 66.667 4.71 0.00 43.98 3.97
36 37 2.342279 CGACGCTGAGTGGGGAAA 59.658 61.111 0.00 0.00 0.00 3.13
37 38 1.738099 CGACGCTGAGTGGGGAAAG 60.738 63.158 0.00 0.00 0.00 2.62
38 39 1.376037 GACGCTGAGTGGGGAAAGG 60.376 63.158 0.00 0.00 0.00 3.11
39 40 2.747855 CGCTGAGTGGGGAAAGGC 60.748 66.667 0.00 0.00 0.00 4.35
40 41 2.747855 GCTGAGTGGGGAAAGGCG 60.748 66.667 0.00 0.00 0.00 5.52
41 42 2.045926 CTGAGTGGGGAAAGGCGG 60.046 66.667 0.00 0.00 0.00 6.13
42 43 3.628646 CTGAGTGGGGAAAGGCGGG 62.629 68.421 0.00 0.00 0.00 6.13
45 46 4.759205 GTGGGGAAAGGCGGGCAT 62.759 66.667 3.78 0.00 0.00 4.40
46 47 4.440829 TGGGGAAAGGCGGGCATC 62.441 66.667 3.78 1.41 0.00 3.91
48 49 4.129148 GGGAAAGGCGGGCATCCT 62.129 66.667 20.44 0.00 34.90 3.24
49 50 2.043953 GGAAAGGCGGGCATCCTT 60.044 61.111 16.00 3.98 45.31 3.36
50 51 2.418083 GGAAAGGCGGGCATCCTTG 61.418 63.158 16.00 0.00 42.75 3.61
59 60 4.772678 GCATCCTTGCCCTTTCCT 57.227 55.556 0.00 0.00 43.38 3.36
60 61 2.498077 GCATCCTTGCCCTTTCCTC 58.502 57.895 0.00 0.00 43.38 3.71
61 62 1.039785 GCATCCTTGCCCTTTCCTCC 61.040 60.000 0.00 0.00 43.38 4.30
62 63 0.332632 CATCCTTGCCCTTTCCTCCA 59.667 55.000 0.00 0.00 0.00 3.86
63 64 1.063417 CATCCTTGCCCTTTCCTCCAT 60.063 52.381 0.00 0.00 0.00 3.41
64 65 0.625849 TCCTTGCCCTTTCCTCCATC 59.374 55.000 0.00 0.00 0.00 3.51
65 66 0.749454 CCTTGCCCTTTCCTCCATCG 60.749 60.000 0.00 0.00 0.00 3.84
66 67 0.035056 CTTGCCCTTTCCTCCATCGT 60.035 55.000 0.00 0.00 0.00 3.73
67 68 0.322456 TTGCCCTTTCCTCCATCGTG 60.322 55.000 0.00 0.00 0.00 4.35
68 69 1.452108 GCCCTTTCCTCCATCGTGG 60.452 63.158 0.00 0.00 39.43 4.94
69 70 1.452108 CCCTTTCCTCCATCGTGGC 60.452 63.158 0.00 0.00 37.47 5.01
70 71 1.452108 CCTTTCCTCCATCGTGGCC 60.452 63.158 0.00 0.00 37.47 5.36
71 72 1.604378 CTTTCCTCCATCGTGGCCT 59.396 57.895 3.32 0.00 37.47 5.19
72 73 0.462759 CTTTCCTCCATCGTGGCCTC 60.463 60.000 3.32 0.00 37.47 4.70
73 74 2.238847 TTTCCTCCATCGTGGCCTCG 62.239 60.000 20.92 20.92 37.47 4.63
74 75 3.461773 CCTCCATCGTGGCCTCGT 61.462 66.667 25.10 11.20 37.47 4.18
75 76 2.105128 CTCCATCGTGGCCTCGTC 59.895 66.667 25.10 2.67 37.47 4.20
76 77 3.758088 CTCCATCGTGGCCTCGTCG 62.758 68.421 25.10 17.02 37.47 5.12
77 78 3.822192 CCATCGTGGCCTCGTCGA 61.822 66.667 25.10 18.48 37.96 4.20
78 79 2.180769 CATCGTGGCCTCGTCGAA 59.819 61.111 25.10 7.91 37.16 3.71
79 80 1.226974 CATCGTGGCCTCGTCGAAT 60.227 57.895 25.10 9.92 37.16 3.34
80 81 0.030235 CATCGTGGCCTCGTCGAATA 59.970 55.000 25.10 6.79 37.16 1.75
81 82 0.959553 ATCGTGGCCTCGTCGAATAT 59.040 50.000 25.10 8.85 37.16 1.28
82 83 0.309922 TCGTGGCCTCGTCGAATATC 59.690 55.000 25.10 0.00 0.00 1.63
83 84 0.311165 CGTGGCCTCGTCGAATATCT 59.689 55.000 18.86 0.00 0.00 1.98
84 85 1.269102 CGTGGCCTCGTCGAATATCTT 60.269 52.381 18.86 0.00 0.00 2.40
85 86 2.395654 GTGGCCTCGTCGAATATCTTC 58.604 52.381 3.32 0.00 0.00 2.87
86 87 1.340248 TGGCCTCGTCGAATATCTTCC 59.660 52.381 3.32 0.00 0.00 3.46
87 88 1.614413 GGCCTCGTCGAATATCTTCCT 59.386 52.381 0.00 0.00 0.00 3.36
88 89 2.351932 GGCCTCGTCGAATATCTTCCTC 60.352 54.545 0.00 0.00 0.00 3.71
89 90 2.666069 GCCTCGTCGAATATCTTCCTCG 60.666 54.545 0.00 0.00 0.00 4.63
90 91 2.576406 CTCGTCGAATATCTTCCTCGC 58.424 52.381 0.00 0.00 32.66 5.03
91 92 1.266175 TCGTCGAATATCTTCCTCGCC 59.734 52.381 0.00 0.00 32.66 5.54
92 93 1.001706 CGTCGAATATCTTCCTCGCCA 60.002 52.381 0.00 0.00 32.66 5.69
93 94 2.667137 GTCGAATATCTTCCTCGCCAG 58.333 52.381 0.00 0.00 32.66 4.85
94 95 1.613925 TCGAATATCTTCCTCGCCAGG 59.386 52.381 0.00 0.00 42.01 4.45
103 104 2.088104 TCCTCGCCAGGATCTTATGT 57.912 50.000 0.00 0.00 44.75 2.29
104 105 2.398588 TCCTCGCCAGGATCTTATGTT 58.601 47.619 0.00 0.00 44.75 2.71
105 106 2.365617 TCCTCGCCAGGATCTTATGTTC 59.634 50.000 0.00 0.00 44.75 3.18
106 107 2.548920 CCTCGCCAGGATCTTATGTTCC 60.549 54.545 0.00 0.00 43.65 3.62
107 108 2.103094 CTCGCCAGGATCTTATGTTCCA 59.897 50.000 8.10 0.00 35.14 3.53
108 109 2.503765 TCGCCAGGATCTTATGTTCCAA 59.496 45.455 8.10 0.00 35.14 3.53
109 110 3.054728 TCGCCAGGATCTTATGTTCCAAA 60.055 43.478 8.10 0.00 35.14 3.28
110 111 3.885297 CGCCAGGATCTTATGTTCCAAAT 59.115 43.478 8.10 0.00 35.14 2.32
111 112 4.023707 CGCCAGGATCTTATGTTCCAAATC 60.024 45.833 8.10 0.00 35.14 2.17
112 113 4.279420 GCCAGGATCTTATGTTCCAAATCC 59.721 45.833 8.10 0.00 35.14 3.01
113 114 4.516698 CCAGGATCTTATGTTCCAAATCCG 59.483 45.833 8.10 0.00 38.15 4.18
114 115 4.023707 CAGGATCTTATGTTCCAAATCCGC 60.024 45.833 8.10 0.00 38.15 5.54
115 116 3.253432 GGATCTTATGTTCCAAATCCGCC 59.747 47.826 0.00 0.00 33.40 6.13
116 117 2.650322 TCTTATGTTCCAAATCCGCCC 58.350 47.619 0.00 0.00 0.00 6.13
117 118 2.241176 TCTTATGTTCCAAATCCGCCCT 59.759 45.455 0.00 0.00 0.00 5.19
118 119 2.341846 TATGTTCCAAATCCGCCCTC 57.658 50.000 0.00 0.00 0.00 4.30
119 120 0.395724 ATGTTCCAAATCCGCCCTCC 60.396 55.000 0.00 0.00 0.00 4.30
120 121 1.303282 GTTCCAAATCCGCCCTCCT 59.697 57.895 0.00 0.00 0.00 3.69
121 122 0.323451 GTTCCAAATCCGCCCTCCTT 60.323 55.000 0.00 0.00 0.00 3.36
122 123 0.407918 TTCCAAATCCGCCCTCCTTT 59.592 50.000 0.00 0.00 0.00 3.11
123 124 0.323360 TCCAAATCCGCCCTCCTTTG 60.323 55.000 0.00 0.00 0.00 2.77
124 125 1.322538 CCAAATCCGCCCTCCTTTGG 61.323 60.000 0.00 0.00 41.03 3.28
125 126 1.682344 AAATCCGCCCTCCTTTGGC 60.682 57.895 0.00 0.00 45.70 4.52
131 132 4.423231 CCCTCCTTTGGCAAGTCC 57.577 61.111 0.00 0.00 0.00 3.85
132 133 1.770324 CCCTCCTTTGGCAAGTCCT 59.230 57.895 0.00 0.00 35.26 3.85
133 134 0.322906 CCCTCCTTTGGCAAGTCCTC 60.323 60.000 0.00 0.00 35.26 3.71
134 135 0.674895 CCTCCTTTGGCAAGTCCTCG 60.675 60.000 0.00 0.00 35.26 4.63
135 136 1.301677 CTCCTTTGGCAAGTCCTCGC 61.302 60.000 0.00 0.00 35.26 5.03
136 137 1.600636 CCTTTGGCAAGTCCTCGCA 60.601 57.895 0.00 0.00 35.26 5.10
137 138 0.962356 CCTTTGGCAAGTCCTCGCAT 60.962 55.000 0.00 0.00 35.26 4.73
138 139 1.678728 CCTTTGGCAAGTCCTCGCATA 60.679 52.381 0.00 0.00 35.26 3.14
139 140 2.292267 CTTTGGCAAGTCCTCGCATAT 58.708 47.619 0.00 0.00 35.26 1.78
140 141 2.418368 TTGGCAAGTCCTCGCATATT 57.582 45.000 0.00 0.00 35.26 1.28
141 142 2.418368 TGGCAAGTCCTCGCATATTT 57.582 45.000 0.00 0.00 35.26 1.40
142 143 2.288666 TGGCAAGTCCTCGCATATTTC 58.711 47.619 0.00 0.00 35.26 2.17
143 144 2.288666 GGCAAGTCCTCGCATATTTCA 58.711 47.619 0.00 0.00 0.00 2.69
144 145 2.682856 GGCAAGTCCTCGCATATTTCAA 59.317 45.455 0.00 0.00 0.00 2.69
145 146 3.487544 GGCAAGTCCTCGCATATTTCAAC 60.488 47.826 0.00 0.00 0.00 3.18
146 147 3.785505 GCAAGTCCTCGCATATTTCAACG 60.786 47.826 0.00 0.00 0.00 4.10
147 148 3.247006 AGTCCTCGCATATTTCAACGT 57.753 42.857 0.00 0.00 0.00 3.99
148 149 3.187700 AGTCCTCGCATATTTCAACGTC 58.812 45.455 0.00 0.00 0.00 4.34
149 150 2.034842 GTCCTCGCATATTTCAACGTCG 60.035 50.000 0.00 0.00 0.00 5.12
150 151 1.332028 CCTCGCATATTTCAACGTCGC 60.332 52.381 0.00 0.00 0.00 5.19
151 152 0.296349 TCGCATATTTCAACGTCGCG 59.704 50.000 0.00 0.00 42.40 5.87
152 153 0.650476 CGCATATTTCAACGTCGCGG 60.650 55.000 6.13 0.00 37.72 6.46
153 154 0.648441 GCATATTTCAACGTCGCGGA 59.352 50.000 6.13 0.00 0.00 5.54
154 155 1.260561 GCATATTTCAACGTCGCGGAT 59.739 47.619 6.13 0.00 0.00 4.18
155 156 2.659291 GCATATTTCAACGTCGCGGATC 60.659 50.000 6.13 0.00 0.00 3.36
156 157 2.572191 TATTTCAACGTCGCGGATCT 57.428 45.000 6.13 0.00 0.00 2.75
157 158 1.278238 ATTTCAACGTCGCGGATCTC 58.722 50.000 6.13 0.00 0.00 2.75
158 159 1.068832 TTTCAACGTCGCGGATCTCG 61.069 55.000 6.13 6.64 42.76 4.04
159 160 2.191354 TTCAACGTCGCGGATCTCGT 62.191 55.000 6.13 7.30 41.72 4.18
166 167 4.933064 GCGGATCTCGTGCTCGGG 62.933 72.222 8.49 4.77 41.72 5.14
167 168 3.518998 CGGATCTCGTGCTCGGGT 61.519 66.667 8.06 0.00 38.84 5.28
168 169 2.413765 GGATCTCGTGCTCGGGTC 59.586 66.667 8.06 5.17 38.84 4.46
169 170 2.122167 GGATCTCGTGCTCGGGTCT 61.122 63.158 8.06 0.00 38.84 3.85
170 171 0.818445 GGATCTCGTGCTCGGGTCTA 60.818 60.000 8.06 0.00 38.84 2.59
171 172 1.240256 GATCTCGTGCTCGGGTCTAT 58.760 55.000 8.06 0.00 38.84 1.98
172 173 1.198178 GATCTCGTGCTCGGGTCTATC 59.802 57.143 8.06 0.32 38.84 2.08
173 174 1.158484 TCTCGTGCTCGGGTCTATCG 61.158 60.000 8.06 0.00 38.84 2.92
174 175 2.353607 CGTGCTCGGGTCTATCGC 60.354 66.667 0.00 0.00 0.00 4.58
175 176 2.835705 CGTGCTCGGGTCTATCGCT 61.836 63.158 0.00 0.00 0.00 4.93
176 177 1.299468 GTGCTCGGGTCTATCGCTG 60.299 63.158 0.00 0.00 0.00 5.18
177 178 2.355244 GCTCGGGTCTATCGCTGC 60.355 66.667 0.00 0.00 0.00 5.25
178 179 2.336809 CTCGGGTCTATCGCTGCC 59.663 66.667 0.00 0.00 0.00 4.85
179 180 2.441348 TCGGGTCTATCGCTGCCA 60.441 61.111 0.00 0.00 0.00 4.92
180 181 2.279517 CGGGTCTATCGCTGCCAC 60.280 66.667 0.00 0.00 0.00 5.01
181 182 2.109181 GGGTCTATCGCTGCCACC 59.891 66.667 0.00 0.00 0.00 4.61
182 183 2.731571 GGGTCTATCGCTGCCACCA 61.732 63.158 0.00 0.00 0.00 4.17
183 184 1.521681 GGTCTATCGCTGCCACCAC 60.522 63.158 0.00 0.00 0.00 4.16
184 185 1.521681 GTCTATCGCTGCCACCACC 60.522 63.158 0.00 0.00 0.00 4.61
185 186 1.987306 TCTATCGCTGCCACCACCA 60.987 57.895 0.00 0.00 0.00 4.17
186 187 1.815421 CTATCGCTGCCACCACCAC 60.815 63.158 0.00 0.00 0.00 4.16
187 188 3.323758 TATCGCTGCCACCACCACC 62.324 63.158 0.00 0.00 0.00 4.61
190 191 4.269523 GCTGCCACCACCACCTGA 62.270 66.667 0.00 0.00 0.00 3.86
191 192 2.759114 CTGCCACCACCACCTGAT 59.241 61.111 0.00 0.00 0.00 2.90
192 193 1.377725 CTGCCACCACCACCTGATC 60.378 63.158 0.00 0.00 0.00 2.92
193 194 2.044946 GCCACCACCACCTGATCC 60.045 66.667 0.00 0.00 0.00 3.36
194 195 2.268920 CCACCACCACCTGATCCG 59.731 66.667 0.00 0.00 0.00 4.18
195 196 2.436646 CACCACCACCTGATCCGC 60.437 66.667 0.00 0.00 0.00 5.54
196 197 3.717294 ACCACCACCTGATCCGCC 61.717 66.667 0.00 0.00 0.00 6.13
197 198 4.838152 CCACCACCTGATCCGCCG 62.838 72.222 0.00 0.00 0.00 6.46
201 202 4.473520 CACCTGATCCGCCGCCTT 62.474 66.667 0.00 0.00 0.00 4.35
202 203 4.162690 ACCTGATCCGCCGCCTTC 62.163 66.667 0.00 0.00 0.00 3.46
203 204 4.918201 CCTGATCCGCCGCCTTCC 62.918 72.222 0.00 0.00 0.00 3.46
204 205 4.161295 CTGATCCGCCGCCTTCCA 62.161 66.667 0.00 0.00 0.00 3.53
205 206 3.466791 CTGATCCGCCGCCTTCCAT 62.467 63.158 0.00 0.00 0.00 3.41
206 207 2.203209 GATCCGCCGCCTTCCATT 60.203 61.111 0.00 0.00 0.00 3.16
207 208 2.203209 ATCCGCCGCCTTCCATTC 60.203 61.111 0.00 0.00 0.00 2.67
208 209 3.774599 ATCCGCCGCCTTCCATTCC 62.775 63.158 0.00 0.00 0.00 3.01
209 210 4.794648 CCGCCGCCTTCCATTCCA 62.795 66.667 0.00 0.00 0.00 3.53
210 211 2.516930 CGCCGCCTTCCATTCCAT 60.517 61.111 0.00 0.00 0.00 3.41
211 212 2.120909 CGCCGCCTTCCATTCCATT 61.121 57.895 0.00 0.00 0.00 3.16
212 213 1.735973 GCCGCCTTCCATTCCATTC 59.264 57.895 0.00 0.00 0.00 2.67
213 214 1.738346 GCCGCCTTCCATTCCATTCC 61.738 60.000 0.00 0.00 0.00 3.01
214 215 1.109323 CCGCCTTCCATTCCATTCCC 61.109 60.000 0.00 0.00 0.00 3.97
215 216 0.395586 CGCCTTCCATTCCATTCCCA 60.396 55.000 0.00 0.00 0.00 4.37
216 217 1.114627 GCCTTCCATTCCATTCCCAC 58.885 55.000 0.00 0.00 0.00 4.61
217 218 1.619432 GCCTTCCATTCCATTCCCACA 60.619 52.381 0.00 0.00 0.00 4.17
218 219 2.102578 CCTTCCATTCCATTCCCACAC 58.897 52.381 0.00 0.00 0.00 3.82
219 220 1.745087 CTTCCATTCCATTCCCACACG 59.255 52.381 0.00 0.00 0.00 4.49
220 221 0.679640 TCCATTCCATTCCCACACGC 60.680 55.000 0.00 0.00 0.00 5.34
221 222 1.429021 CATTCCATTCCCACACGCG 59.571 57.895 3.53 3.53 0.00 6.01
222 223 2.406616 ATTCCATTCCCACACGCGC 61.407 57.895 5.73 0.00 0.00 6.86
240 241 4.687215 CGGATCCATGCCGCGGAT 62.687 66.667 33.48 16.99 46.20 4.18
243 244 3.244580 ATCCATGCCGCGGATCCT 61.245 61.111 33.48 6.32 39.06 3.24
244 245 3.541950 ATCCATGCCGCGGATCCTG 62.542 63.158 33.48 18.71 39.06 3.86
246 247 4.552365 CATGCCGCGGATCCTGGT 62.552 66.667 33.48 2.03 0.00 4.00
247 248 4.241555 ATGCCGCGGATCCTGGTC 62.242 66.667 33.48 9.04 0.00 4.02
255 256 4.593864 GATCCTGGTCGCCCGCTC 62.594 72.222 0.00 0.00 0.00 5.03
269 270 4.410400 GCTCCACCCAACCCCGAG 62.410 72.222 0.00 0.00 0.00 4.63
270 271 4.410400 CTCCACCCAACCCCGAGC 62.410 72.222 0.00 0.00 0.00 5.03
283 284 4.838152 CGAGCCCCGGTCACCATG 62.838 72.222 0.00 0.00 33.91 3.66
284 285 3.399181 GAGCCCCGGTCACCATGA 61.399 66.667 0.00 0.00 0.00 3.07
285 286 3.391665 GAGCCCCGGTCACCATGAG 62.392 68.421 0.00 0.00 0.00 2.90
286 287 3.717294 GCCCCGGTCACCATGAGT 61.717 66.667 0.00 0.00 0.00 3.41
287 288 2.584608 CCCCGGTCACCATGAGTC 59.415 66.667 0.00 0.00 0.00 3.36
288 289 2.584608 CCCGGTCACCATGAGTCC 59.415 66.667 0.00 0.00 0.00 3.85
289 290 2.584608 CCGGTCACCATGAGTCCC 59.415 66.667 0.00 0.00 0.00 4.46
290 291 2.584608 CGGTCACCATGAGTCCCC 59.415 66.667 0.00 0.00 0.00 4.81
291 292 2.998949 GGTCACCATGAGTCCCCC 59.001 66.667 0.00 0.00 0.00 5.40
305 306 4.722700 CCCCCTGCGGAACTGGTG 62.723 72.222 0.00 0.00 35.64 4.17
306 307 3.636231 CCCCTGCGGAACTGGTGA 61.636 66.667 0.00 0.00 35.64 4.02
307 308 2.046892 CCCTGCGGAACTGGTGAG 60.047 66.667 0.00 0.00 35.64 3.51
308 309 2.583441 CCCTGCGGAACTGGTGAGA 61.583 63.158 0.00 0.00 35.64 3.27
309 310 1.599047 CCTGCGGAACTGGTGAGAT 59.401 57.895 0.00 0.00 32.81 2.75
310 311 0.460987 CCTGCGGAACTGGTGAGATC 60.461 60.000 0.00 0.00 32.81 2.75
311 312 0.247460 CTGCGGAACTGGTGAGATCA 59.753 55.000 0.00 0.00 0.00 2.92
672 673 4.785453 GGGAGCGGGGCTGACAAG 62.785 72.222 0.00 0.00 39.88 3.16
673 674 4.021925 GGAGCGGGGCTGACAAGT 62.022 66.667 0.00 0.00 39.88 3.16
674 675 2.656069 GGAGCGGGGCTGACAAGTA 61.656 63.158 0.00 0.00 39.88 2.24
675 676 1.295423 GAGCGGGGCTGACAAGTAA 59.705 57.895 0.00 0.00 39.88 2.24
676 677 0.741221 GAGCGGGGCTGACAAGTAAG 60.741 60.000 0.00 0.00 39.88 2.34
677 678 1.003718 GCGGGGCTGACAAGTAAGT 60.004 57.895 0.00 0.00 0.00 2.24
678 679 0.605589 GCGGGGCTGACAAGTAAGTT 60.606 55.000 0.00 0.00 0.00 2.66
679 680 1.892209 CGGGGCTGACAAGTAAGTTT 58.108 50.000 0.00 0.00 0.00 2.66
680 681 2.227194 CGGGGCTGACAAGTAAGTTTT 58.773 47.619 0.00 0.00 0.00 2.43
681 682 2.031157 CGGGGCTGACAAGTAAGTTTTG 60.031 50.000 0.00 0.00 0.00 2.44
682 683 2.956333 GGGGCTGACAAGTAAGTTTTGT 59.044 45.455 0.00 0.00 41.21 2.83
683 684 3.243401 GGGGCTGACAAGTAAGTTTTGTG 60.243 47.826 0.00 0.00 38.78 3.33
684 685 3.380320 GGGCTGACAAGTAAGTTTTGTGT 59.620 43.478 0.00 0.00 38.78 3.72
685 686 4.142249 GGGCTGACAAGTAAGTTTTGTGTT 60.142 41.667 0.00 0.00 38.78 3.32
686 687 5.407502 GGCTGACAAGTAAGTTTTGTGTTT 58.592 37.500 0.00 0.00 38.78 2.83
687 688 5.867174 GGCTGACAAGTAAGTTTTGTGTTTT 59.133 36.000 0.00 0.00 38.78 2.43
688 689 7.030768 GGCTGACAAGTAAGTTTTGTGTTTTA 58.969 34.615 0.00 0.00 38.78 1.52
689 690 7.704899 GGCTGACAAGTAAGTTTTGTGTTTTAT 59.295 33.333 0.00 0.00 38.78 1.40
690 691 8.743099 GCTGACAAGTAAGTTTTGTGTTTTATC 58.257 33.333 0.00 0.00 38.78 1.75
691 692 8.829514 TGACAAGTAAGTTTTGTGTTTTATCG 57.170 30.769 0.00 0.00 38.78 2.92
692 693 8.666573 TGACAAGTAAGTTTTGTGTTTTATCGA 58.333 29.630 0.00 0.00 38.78 3.59
693 694 8.831000 ACAAGTAAGTTTTGTGTTTTATCGAC 57.169 30.769 0.00 0.00 37.38 4.20
694 695 7.637132 ACAAGTAAGTTTTGTGTTTTATCGACG 59.363 33.333 0.00 0.00 37.38 5.12
695 696 7.237920 AGTAAGTTTTGTGTTTTATCGACGT 57.762 32.000 0.00 0.00 0.00 4.34
696 697 7.339953 AGTAAGTTTTGTGTTTTATCGACGTC 58.660 34.615 5.18 5.18 0.00 4.34
697 698 5.721876 AGTTTTGTGTTTTATCGACGTCA 57.278 34.783 17.16 3.13 0.00 4.35
698 699 6.109320 AGTTTTGTGTTTTATCGACGTCAA 57.891 33.333 17.16 0.00 0.00 3.18
699 700 6.544622 AGTTTTGTGTTTTATCGACGTCAAA 58.455 32.000 17.16 5.90 0.00 2.69
700 701 7.190871 AGTTTTGTGTTTTATCGACGTCAAAT 58.809 30.769 17.16 10.79 0.00 2.32
701 702 7.698970 AGTTTTGTGTTTTATCGACGTCAAATT 59.301 29.630 17.16 0.00 0.00 1.82
702 703 8.945930 GTTTTGTGTTTTATCGACGTCAAATTA 58.054 29.630 17.16 0.00 0.00 1.40
703 704 9.499585 TTTTGTGTTTTATCGACGTCAAATTAA 57.500 25.926 17.16 5.88 0.00 1.40
704 705 8.478527 TTGTGTTTTATCGACGTCAAATTAAC 57.521 30.769 17.16 13.35 0.00 2.01
705 706 6.786573 TGTGTTTTATCGACGTCAAATTAACG 59.213 34.615 17.16 10.72 45.37 3.18
706 707 7.003072 GTGTTTTATCGACGTCAAATTAACGA 58.997 34.615 17.16 5.21 42.62 3.85
707 708 7.685304 GTGTTTTATCGACGTCAAATTAACGAT 59.315 33.333 17.16 12.50 42.62 3.73
708 709 7.684897 TGTTTTATCGACGTCAAATTAACGATG 59.315 33.333 17.16 10.21 42.62 3.84
709 710 6.874297 TTATCGACGTCAAATTAACGATGT 57.126 33.333 17.16 8.25 42.62 3.06
710 711 7.967771 TTATCGACGTCAAATTAACGATGTA 57.032 32.000 17.16 1.23 42.62 2.29
711 712 6.874297 ATCGACGTCAAATTAACGATGTAA 57.126 33.333 17.16 2.55 42.62 2.41
712 713 6.069665 TCGACGTCAAATTAACGATGTAAC 57.930 37.500 17.16 0.00 42.62 2.50
713 714 5.628606 TCGACGTCAAATTAACGATGTAACA 59.371 36.000 17.16 0.00 42.62 2.41
714 715 6.143598 TCGACGTCAAATTAACGATGTAACAA 59.856 34.615 17.16 0.00 42.62 2.83
715 716 6.951530 CGACGTCAAATTAACGATGTAACAAT 59.048 34.615 17.16 0.00 42.62 2.71
716 717 7.046506 CGACGTCAAATTAACGATGTAACAATG 60.047 37.037 17.16 0.00 42.62 2.82
717 718 7.577979 ACGTCAAATTAACGATGTAACAATGT 58.422 30.769 17.27 0.00 42.62 2.71
718 719 8.710551 ACGTCAAATTAACGATGTAACAATGTA 58.289 29.630 17.27 0.00 42.62 2.29
719 720 9.531412 CGTCAAATTAACGATGTAACAATGTAA 57.469 29.630 7.35 0.00 42.62 2.41
763 764 8.947055 ATGCTTTGTACTTTTGATGAACTTTT 57.053 26.923 0.00 0.00 0.00 2.27
773 774 9.063615 ACTTTTGATGAACTTTTTACCGTAGAT 57.936 29.630 0.00 0.00 0.00 1.98
787 788 3.639094 ACCGTAGATCTGATCCTTTCCAG 59.361 47.826 13.83 0.52 0.00 3.86
790 791 5.163405 CCGTAGATCTGATCCTTTCCAGAAA 60.163 44.000 13.83 0.00 42.02 2.52
828 829 6.327934 CAAGGACAGCTGAAATAAAATCCAG 58.672 40.000 23.35 7.20 0.00 3.86
834 835 8.767478 ACAGCTGAAATAAAATCCAGAATTTG 57.233 30.769 23.35 0.00 37.64 2.32
875 876 1.000496 GGACTTGTCGTCTTTCGGAGT 60.000 52.381 0.00 0.00 42.44 3.85
926 933 1.810031 CGCAGTGAGACAAAACTCCCA 60.810 52.381 0.00 0.00 36.22 4.37
943 950 1.133668 CCCAAAAGGCCTCCTCCTATG 60.134 57.143 5.23 0.00 34.82 2.23
980 987 3.642503 ACGGCCCAAACGATCCCA 61.643 61.111 0.00 0.00 34.93 4.37
981 988 2.124320 CGGCCCAAACGATCCCAT 60.124 61.111 0.00 0.00 0.00 4.00
1176 1190 2.955246 TCCCTGCTCTCCTCCCCT 60.955 66.667 0.00 0.00 0.00 4.79
1341 1367 3.649277 CTACTTCCGCTGCACGCCT 62.649 63.158 0.00 0.00 41.76 5.52
1378 1404 4.292178 GCCTCTCCGCGATCTGGG 62.292 72.222 8.23 4.07 0.00 4.45
1386 1412 2.818132 GCGATCTGGGTCCTCCTG 59.182 66.667 0.00 0.00 36.20 3.86
1476 1502 4.020617 CTGCTCCTCCCCAACGCA 62.021 66.667 0.00 0.00 0.00 5.24
1877 1903 3.008330 CTCTTCTCAATTCAGGTGGCAG 58.992 50.000 0.00 0.00 0.00 4.85
1894 1920 0.796312 CAGTTCACCCAATTCGACGG 59.204 55.000 0.00 0.00 0.00 4.79
1935 1961 1.884235 ACTTGACTGGTGCTGTTAGC 58.116 50.000 0.00 0.00 42.82 3.09
2139 2168 4.113815 TTGGGCTCATCAGGGGCG 62.114 66.667 0.00 0.00 0.00 6.13
2202 2231 2.741747 GGGAGGGCGGCTATGTAC 59.258 66.667 9.56 0.00 0.00 2.90
2205 2234 1.533469 GGAGGGCGGCTATGTACGAT 61.533 60.000 9.56 0.00 0.00 3.73
2214 2243 3.602489 CGGCTATGTACGATTACATGACG 59.398 47.826 0.00 8.44 46.53 4.35
2266 2295 1.750930 CTCGGCATCACCCTGCTAT 59.249 57.895 0.00 0.00 41.95 2.97
2325 2354 3.458163 TCCATCACCCTCGGCGTC 61.458 66.667 6.85 0.00 0.00 5.19
2359 2388 2.414481 CTCACAAGAACATTGCTCGAGG 59.586 50.000 15.58 0.00 0.00 4.63
2386 2415 2.268762 TATGCAGTGCTCCACAAACA 57.731 45.000 17.60 0.00 36.74 2.83
2419 2448 7.040132 TGTTTTAGCATCCATGTTTGTATGTCA 60.040 33.333 0.00 0.00 0.00 3.58
2420 2449 7.643569 TTTAGCATCCATGTTTGTATGTCAT 57.356 32.000 0.00 0.00 0.00 3.06
2421 2450 7.643569 TTAGCATCCATGTTTGTATGTCATT 57.356 32.000 0.00 0.00 0.00 2.57
2475 2504 6.785466 AGTTGGTTAGGTTGTATTTTGGGAAT 59.215 34.615 0.00 0.00 0.00 3.01
2486 2515 7.552050 TGTATTTTGGGAATTGTTCATCCTT 57.448 32.000 0.00 0.00 35.95 3.36
2491 2520 4.081406 TGGGAATTGTTCATCCTTGTCAG 58.919 43.478 0.00 0.00 35.95 3.51
2523 2552 5.316167 TGTGAAACTGTTAATCTGATGGCT 58.684 37.500 0.00 0.00 38.04 4.75
2527 2556 6.092122 TGAAACTGTTAATCTGATGGCTTACG 59.908 38.462 0.00 0.00 0.00 3.18
2528 2557 5.086104 ACTGTTAATCTGATGGCTTACGT 57.914 39.130 0.00 0.00 0.00 3.57
2543 2572 5.751509 TGGCTTACGTGACATGTTGATATAC 59.248 40.000 5.45 0.00 0.00 1.47
2545 2574 5.107989 GCTTACGTGACATGTTGATATACGG 60.108 44.000 5.45 0.00 34.69 4.02
2553 2582 1.067974 TGTTGATATACGGACCGGCTG 59.932 52.381 20.00 1.57 0.00 4.85
2607 2637 9.178758 GTATTGATTCCTATGTTTGGAAGAAGT 57.821 33.333 0.00 0.00 45.43 3.01
2609 2639 7.452880 TGATTCCTATGTTTGGAAGAAGTTG 57.547 36.000 0.00 0.00 45.43 3.16
2616 2646 5.398603 TGTTTGGAAGAAGTTGCTTTTGA 57.601 34.783 0.00 0.00 0.00 2.69
2617 2647 5.167845 TGTTTGGAAGAAGTTGCTTTTGAC 58.832 37.500 0.00 0.00 0.00 3.18
2618 2648 5.167845 GTTTGGAAGAAGTTGCTTTTGACA 58.832 37.500 0.00 0.00 0.00 3.58
2627 2657 3.701040 AGTTGCTTTTGACATGAACCTGT 59.299 39.130 0.00 0.00 0.00 4.00
2628 2658 3.988379 TGCTTTTGACATGAACCTGTC 57.012 42.857 0.00 3.88 44.70 3.51
2650 2680 3.128259 GCACAATCTGCAGTCTCGA 57.872 52.632 14.67 0.00 46.29 4.04
2651 2681 1.432514 GCACAATCTGCAGTCTCGAA 58.567 50.000 14.67 0.00 46.29 3.71
2667 2697 4.556523 GTCTCGAATGCTTGCTTTGATTTC 59.443 41.667 0.00 0.00 0.00 2.17
2671 2701 4.557690 CGAATGCTTGCTTTGATTTCTCTG 59.442 41.667 0.00 0.00 0.00 3.35
2677 2707 6.134730 GCTTGCTTTGATTTCTCTGATATCG 58.865 40.000 0.00 0.00 0.00 2.92
2689 2719 6.685527 TCTCTGATATCGTATGGTATGCTC 57.314 41.667 0.00 0.00 0.00 4.26
2691 2721 6.887002 TCTCTGATATCGTATGGTATGCTCTT 59.113 38.462 0.00 0.00 0.00 2.85
2694 2724 8.678199 TCTGATATCGTATGGTATGCTCTTAAG 58.322 37.037 0.00 0.00 0.00 1.85
2697 2727 9.291664 GATATCGTATGGTATGCTCTTAAGTTC 57.708 37.037 1.63 0.00 0.00 3.01
2698 2728 6.710597 TCGTATGGTATGCTCTTAAGTTCT 57.289 37.500 1.63 0.00 0.00 3.01
2699 2729 6.736123 TCGTATGGTATGCTCTTAAGTTCTC 58.264 40.000 1.63 0.00 0.00 2.87
2704 2734 2.770164 TGCTCTTAAGTTCTCAGCCC 57.230 50.000 9.81 0.00 0.00 5.19
2714 2744 1.886542 GTTCTCAGCCCGGAAAAACAT 59.113 47.619 0.73 0.00 0.00 2.71
2716 2746 2.706890 TCTCAGCCCGGAAAAACATAC 58.293 47.619 0.73 0.00 0.00 2.39
2723 2753 1.735571 CCGGAAAAACATACCAGACCG 59.264 52.381 0.00 0.00 39.02 4.79
2740 2770 5.694006 CCAGACCGCAATAGAGAAGAATTAG 59.306 44.000 0.00 0.00 0.00 1.73
2744 2774 6.508777 ACCGCAATAGAGAAGAATTAGTCTC 58.491 40.000 9.03 9.03 40.56 3.36
2745 2775 5.627367 CCGCAATAGAGAAGAATTAGTCTCG 59.373 44.000 10.66 1.73 44.18 4.04
2769 2799 5.391312 AATTCCTTGGATTTTGAGGTTCG 57.609 39.130 0.00 0.00 32.33 3.95
2771 2801 3.408634 TCCTTGGATTTTGAGGTTCGTC 58.591 45.455 0.00 0.00 32.33 4.20
2781 2811 1.004918 AGGTTCGTCTGCCCTTTCG 60.005 57.895 0.00 0.00 0.00 3.46
2804 2834 2.409651 GCTACGCTGAGTCCCTCG 59.590 66.667 0.00 0.00 32.35 4.63
2830 2860 7.560368 ACAGGGAAGAACTTGTAAGATGATAG 58.440 38.462 0.00 0.00 0.00 2.08
2831 2861 6.481644 CAGGGAAGAACTTGTAAGATGATAGC 59.518 42.308 0.00 0.00 0.00 2.97
2832 2862 6.156949 AGGGAAGAACTTGTAAGATGATAGCA 59.843 38.462 0.00 0.00 0.00 3.49
2833 2863 6.258947 GGGAAGAACTTGTAAGATGATAGCAC 59.741 42.308 0.00 0.00 0.00 4.40
2834 2864 7.044798 GGAAGAACTTGTAAGATGATAGCACT 58.955 38.462 0.00 0.00 0.00 4.40
2835 2865 7.550906 GGAAGAACTTGTAAGATGATAGCACTT 59.449 37.037 0.00 0.00 0.00 3.16
2836 2866 7.840342 AGAACTTGTAAGATGATAGCACTTG 57.160 36.000 0.00 0.00 0.00 3.16
2837 2867 7.615403 AGAACTTGTAAGATGATAGCACTTGA 58.385 34.615 0.00 0.00 0.00 3.02
2838 2868 8.263640 AGAACTTGTAAGATGATAGCACTTGAT 58.736 33.333 0.00 0.00 0.00 2.57
2839 2869 9.534565 GAACTTGTAAGATGATAGCACTTGATA 57.465 33.333 0.00 0.00 0.00 2.15
2852 2882 5.706916 AGCACTTGATATTTTGTTGCTCAG 58.293 37.500 0.00 0.00 0.00 3.35
2854 2884 5.404946 CACTTGATATTTTGTTGCTCAGGG 58.595 41.667 0.00 0.00 0.00 4.45
2855 2885 4.082026 ACTTGATATTTTGTTGCTCAGGGC 60.082 41.667 0.00 0.00 42.22 5.19
2856 2886 2.760092 TGATATTTTGTTGCTCAGGGCC 59.240 45.455 0.00 0.00 40.92 5.80
2857 2887 2.300956 TATTTTGTTGCTCAGGGCCA 57.699 45.000 6.18 0.00 40.92 5.36
2858 2888 0.681175 ATTTTGTTGCTCAGGGCCAC 59.319 50.000 6.18 0.00 40.92 5.01
2859 2889 0.396974 TTTTGTTGCTCAGGGCCACT 60.397 50.000 6.18 0.00 40.92 4.00
2860 2890 0.823356 TTTGTTGCTCAGGGCCACTC 60.823 55.000 6.18 0.00 40.92 3.51
2861 2891 1.993701 TTGTTGCTCAGGGCCACTCA 61.994 55.000 6.18 0.00 40.92 3.41
2862 2892 1.968540 GTTGCTCAGGGCCACTCAC 60.969 63.158 6.18 0.00 40.92 3.51
2863 2893 2.149383 TTGCTCAGGGCCACTCACT 61.149 57.895 6.18 0.00 40.92 3.41
2864 2894 2.046507 GCTCAGGGCCACTCACTG 60.047 66.667 6.18 1.65 34.27 3.66
2865 2895 2.888447 GCTCAGGGCCACTCACTGT 61.888 63.158 6.18 0.00 34.02 3.55
2866 2896 1.757306 CTCAGGGCCACTCACTGTT 59.243 57.895 6.18 0.00 34.02 3.16
2867 2897 0.976641 CTCAGGGCCACTCACTGTTA 59.023 55.000 6.18 0.00 34.02 2.41
2868 2898 0.976641 TCAGGGCCACTCACTGTTAG 59.023 55.000 6.18 0.00 34.02 2.34
2869 2899 0.976641 CAGGGCCACTCACTGTTAGA 59.023 55.000 6.18 0.00 0.00 2.10
2870 2900 1.347707 CAGGGCCACTCACTGTTAGAA 59.652 52.381 6.18 0.00 0.00 2.10
2871 2901 2.054799 AGGGCCACTCACTGTTAGAAA 58.945 47.619 6.18 0.00 0.00 2.52
2872 2902 2.039084 AGGGCCACTCACTGTTAGAAAG 59.961 50.000 6.18 0.00 0.00 2.62
2873 2903 2.224548 GGGCCACTCACTGTTAGAAAGT 60.225 50.000 4.39 0.00 0.00 2.66
2874 2904 3.007614 GGGCCACTCACTGTTAGAAAGTA 59.992 47.826 4.39 0.00 0.00 2.24
2875 2905 4.504340 GGGCCACTCACTGTTAGAAAGTAA 60.504 45.833 4.39 0.00 0.00 2.24
2876 2906 5.061179 GGCCACTCACTGTTAGAAAGTAAA 58.939 41.667 0.00 0.00 0.00 2.01
2877 2907 5.705905 GGCCACTCACTGTTAGAAAGTAAAT 59.294 40.000 0.00 0.00 0.00 1.40
2878 2908 6.206829 GGCCACTCACTGTTAGAAAGTAAATT 59.793 38.462 0.00 0.00 0.00 1.82
2879 2909 7.389607 GGCCACTCACTGTTAGAAAGTAAATTA 59.610 37.037 0.00 0.00 0.00 1.40
2880 2910 8.947115 GCCACTCACTGTTAGAAAGTAAATTAT 58.053 33.333 0.00 0.00 0.00 1.28
2882 2912 9.760660 CACTCACTGTTAGAAAGTAAATTATGC 57.239 33.333 0.00 0.00 0.00 3.14
2902 2932 8.815565 TTATGCTGTTCACCTTAATTTCCATA 57.184 30.769 0.00 0.00 0.00 2.74
2906 2936 9.420118 TGCTGTTCACCTTAATTTCCATATTAT 57.580 29.630 0.00 0.00 0.00 1.28
2907 2937 9.683069 GCTGTTCACCTTAATTTCCATATTATG 57.317 33.333 0.00 0.00 0.00 1.90
2937 2967 7.886338 TCTTCAGGATTTAAAGAAAGGAAAGC 58.114 34.615 0.00 0.00 0.00 3.51
2938 2968 7.505585 TCTTCAGGATTTAAAGAAAGGAAAGCA 59.494 33.333 0.00 0.00 0.00 3.91
2939 2969 7.595819 TCAGGATTTAAAGAAAGGAAAGCAA 57.404 32.000 0.00 0.00 0.00 3.91
2940 2970 7.433680 TCAGGATTTAAAGAAAGGAAAGCAAC 58.566 34.615 0.00 0.00 0.00 4.17
2941 2971 7.287696 TCAGGATTTAAAGAAAGGAAAGCAACT 59.712 33.333 0.00 0.00 0.00 3.16
2942 2972 7.596621 CAGGATTTAAAGAAAGGAAAGCAACTC 59.403 37.037 0.00 0.00 0.00 3.01
2943 2973 7.507277 AGGATTTAAAGAAAGGAAAGCAACTCT 59.493 33.333 0.00 0.00 0.00 3.24
2970 3000 1.351350 ACCCTAACCTTTGGAGCACTC 59.649 52.381 0.00 0.00 0.00 3.51
2988 3018 4.083484 GCACTCGTAAAACAAAGCCATACT 60.083 41.667 0.00 0.00 0.00 2.12
2994 3024 6.199342 TCGTAAAACAAAGCCATACTTTTTGC 59.801 34.615 0.00 0.00 46.73 3.68
3026 3066 3.238108 ACTACTGGAGCAACTGAATCG 57.762 47.619 0.00 0.00 0.00 3.34
3028 3068 2.086054 ACTGGAGCAACTGAATCGAC 57.914 50.000 0.00 0.00 0.00 4.20
3029 3069 1.620819 ACTGGAGCAACTGAATCGACT 59.379 47.619 0.00 0.00 0.00 4.18
3030 3070 2.826128 ACTGGAGCAACTGAATCGACTA 59.174 45.455 0.00 0.00 0.00 2.59
3032 3072 2.560981 TGGAGCAACTGAATCGACTACA 59.439 45.455 0.00 0.00 0.00 2.74
3033 3073 3.195610 TGGAGCAACTGAATCGACTACAT 59.804 43.478 0.00 0.00 0.00 2.29
3034 3074 4.184629 GGAGCAACTGAATCGACTACATT 58.815 43.478 0.00 0.00 0.00 2.71
3035 3075 4.268884 GGAGCAACTGAATCGACTACATTC 59.731 45.833 0.00 0.00 0.00 2.67
3036 3076 3.859961 AGCAACTGAATCGACTACATTCG 59.140 43.478 0.00 0.00 40.53 3.34
3037 3077 3.542291 GCAACTGAATCGACTACATTCGC 60.542 47.826 0.00 0.00 38.95 4.70
3038 3078 3.784701 ACTGAATCGACTACATTCGCT 57.215 42.857 0.00 0.00 38.95 4.93
3039 3079 3.696898 ACTGAATCGACTACATTCGCTC 58.303 45.455 0.00 0.00 38.95 5.03
3040 3080 3.378742 ACTGAATCGACTACATTCGCTCT 59.621 43.478 0.00 0.00 38.95 4.09
3041 3081 3.953766 TGAATCGACTACATTCGCTCTC 58.046 45.455 0.00 0.00 38.95 3.20
3042 3082 3.628032 TGAATCGACTACATTCGCTCTCT 59.372 43.478 0.00 0.00 38.95 3.10
3043 3083 3.889196 ATCGACTACATTCGCTCTCTC 57.111 47.619 0.00 0.00 38.95 3.20
3044 3084 2.629051 TCGACTACATTCGCTCTCTCA 58.371 47.619 0.00 0.00 38.95 3.27
3045 3085 3.007635 TCGACTACATTCGCTCTCTCAA 58.992 45.455 0.00 0.00 38.95 3.02
3046 3086 3.102276 CGACTACATTCGCTCTCTCAAC 58.898 50.000 0.00 0.00 31.03 3.18
3047 3087 3.426292 CGACTACATTCGCTCTCTCAACA 60.426 47.826 0.00 0.00 31.03 3.33
3048 3088 4.677584 GACTACATTCGCTCTCTCAACAT 58.322 43.478 0.00 0.00 0.00 2.71
3049 3089 4.677584 ACTACATTCGCTCTCTCAACATC 58.322 43.478 0.00 0.00 0.00 3.06
3050 3090 3.883830 ACATTCGCTCTCTCAACATCT 57.116 42.857 0.00 0.00 0.00 2.90
3051 3091 3.519579 ACATTCGCTCTCTCAACATCTG 58.480 45.455 0.00 0.00 0.00 2.90
3052 3092 2.662006 TTCGCTCTCTCAACATCTGG 57.338 50.000 0.00 0.00 0.00 3.86
3053 3093 1.839424 TCGCTCTCTCAACATCTGGA 58.161 50.000 0.00 0.00 0.00 3.86
3054 3094 1.474478 TCGCTCTCTCAACATCTGGAC 59.526 52.381 0.00 0.00 0.00 4.02
3071 3111 2.304761 TGGACAACACCTAATGACCTCC 59.695 50.000 0.00 0.00 33.40 4.30
3151 3191 2.887152 GGCCACTTTGAAACATGAGACT 59.113 45.455 0.00 0.00 0.00 3.24
3155 3195 4.320057 CCACTTTGAAACATGAGACTGCTC 60.320 45.833 0.00 0.00 41.67 4.26
3157 3197 5.698089 CACTTTGAAACATGAGACTGCTCTA 59.302 40.000 0.00 0.00 41.84 2.43
3159 3199 6.939163 ACTTTGAAACATGAGACTGCTCTAAT 59.061 34.615 0.00 0.00 41.84 1.73
3165 3205 4.101274 ACATGAGACTGCTCTAATGCTGAT 59.899 41.667 0.00 0.00 41.84 2.90
3174 3214 5.573146 TGCTCTAATGCTGATACGATATCG 58.427 41.667 23.18 23.18 46.33 2.92
3181 3221 3.005367 TGCTGATACGATATCGGAAAGCA 59.995 43.478 31.79 31.79 46.65 3.91
3210 3250 6.015772 TCTGCATGATCCATTGACCATATTTG 60.016 38.462 0.00 0.00 0.00 2.32
3224 3264 6.127647 TGACCATATTTGTTCATCAGAAAGGC 60.128 38.462 0.00 0.00 35.08 4.35
3236 3276 0.471617 AGAAAGGCGCTGCTGGATAT 59.528 50.000 7.64 0.00 0.00 1.63
3245 3285 3.062763 CGCTGCTGGATATAAGGAACAG 58.937 50.000 0.00 0.00 0.00 3.16
3256 3296 8.988060 TGGATATAAGGAACAGACTACAAATCA 58.012 33.333 0.00 0.00 0.00 2.57
3276 3316 4.206375 TCATTTGAACAGAAAGGTGCTGA 58.794 39.130 0.00 0.00 36.86 4.26
3284 3324 3.838317 ACAGAAAGGTGCTGACTGGTATA 59.162 43.478 0.00 0.00 36.86 1.47
3328 3370 6.839124 TGATTGCATGAACTGGTTTTATCT 57.161 33.333 0.00 0.00 0.00 1.98
3337 3379 6.215121 TGAACTGGTTTTATCTGCAACAATG 58.785 36.000 0.00 0.00 0.00 2.82
3355 3397 4.094294 ACAATGCATGCATGAAATTTCTGC 59.906 37.500 32.79 24.03 36.68 4.26
3367 3409 7.640852 CATGAAATTTCTGCAATTTGGTTTCA 58.359 30.769 18.64 11.49 43.89 2.69
3371 3413 4.320608 TTCTGCAATTTGGTTTCAGTCC 57.679 40.909 0.00 0.00 0.00 3.85
3380 3422 2.650322 TGGTTTCAGTCCTGTGGAAAC 58.350 47.619 7.71 7.71 45.91 2.78
3391 3433 4.220821 GTCCTGTGGAAACTATCAGTCTGA 59.779 45.833 4.68 4.68 31.38 3.27
3392 3434 4.220821 TCCTGTGGAAACTATCAGTCTGAC 59.779 45.833 4.21 0.00 0.00 3.51
3400 3442 6.756074 GGAAACTATCAGTCTGACATGAAGAG 59.244 42.308 10.88 13.04 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.803082 CCGCATTCGTGCTGTGGG 61.803 66.667 0.00 0.00 39.99 4.61
1 2 4.465512 GCCGCATTCGTGCTGTGG 62.466 66.667 9.01 9.01 45.21 4.17
2 3 4.465512 GGCCGCATTCGTGCTGTG 62.466 66.667 0.00 0.00 34.09 3.66
18 19 3.234630 TTTCCCCACTCAGCGTCGG 62.235 63.158 0.00 0.00 0.00 4.79
19 20 1.738099 CTTTCCCCACTCAGCGTCG 60.738 63.158 0.00 0.00 0.00 5.12
20 21 1.376037 CCTTTCCCCACTCAGCGTC 60.376 63.158 0.00 0.00 0.00 5.19
21 22 2.750350 CCTTTCCCCACTCAGCGT 59.250 61.111 0.00 0.00 0.00 5.07
22 23 2.747855 GCCTTTCCCCACTCAGCG 60.748 66.667 0.00 0.00 0.00 5.18
23 24 2.747855 CGCCTTTCCCCACTCAGC 60.748 66.667 0.00 0.00 0.00 4.26
24 25 2.045926 CCGCCTTTCCCCACTCAG 60.046 66.667 0.00 0.00 0.00 3.35
25 26 3.646715 CCCGCCTTTCCCCACTCA 61.647 66.667 0.00 0.00 0.00 3.41
28 29 4.759205 ATGCCCGCCTTTCCCCAC 62.759 66.667 0.00 0.00 0.00 4.61
29 30 4.440829 GATGCCCGCCTTTCCCCA 62.441 66.667 0.00 0.00 0.00 4.96
31 32 3.662117 AAGGATGCCCGCCTTTCCC 62.662 63.158 0.00 0.00 42.99 3.97
32 33 2.043953 AAGGATGCCCGCCTTTCC 60.044 61.111 0.00 0.00 42.99 3.13
33 34 3.200522 CAAGGATGCCCGCCTTTC 58.799 61.111 0.00 0.00 42.99 2.62
43 44 0.332632 TGGAGGAAAGGGCAAGGATG 59.667 55.000 0.00 0.00 0.00 3.51
44 45 1.216427 GATGGAGGAAAGGGCAAGGAT 59.784 52.381 0.00 0.00 0.00 3.24
45 46 0.625849 GATGGAGGAAAGGGCAAGGA 59.374 55.000 0.00 0.00 0.00 3.36
46 47 0.749454 CGATGGAGGAAAGGGCAAGG 60.749 60.000 0.00 0.00 0.00 3.61
47 48 0.035056 ACGATGGAGGAAAGGGCAAG 60.035 55.000 0.00 0.00 0.00 4.01
48 49 0.322456 CACGATGGAGGAAAGGGCAA 60.322 55.000 0.00 0.00 0.00 4.52
49 50 1.299648 CACGATGGAGGAAAGGGCA 59.700 57.895 0.00 0.00 0.00 5.36
50 51 1.452108 CCACGATGGAGGAAAGGGC 60.452 63.158 0.00 0.00 40.96 5.19
51 52 1.452108 GCCACGATGGAGGAAAGGG 60.452 63.158 8.04 0.00 40.96 3.95
52 53 1.452108 GGCCACGATGGAGGAAAGG 60.452 63.158 0.00 0.00 40.96 3.11
53 54 0.462759 GAGGCCACGATGGAGGAAAG 60.463 60.000 5.01 0.00 40.96 2.62
54 55 1.602237 GAGGCCACGATGGAGGAAA 59.398 57.895 5.01 0.00 40.96 3.13
55 56 2.721167 CGAGGCCACGATGGAGGAA 61.721 63.158 18.51 0.00 40.96 3.36
56 57 3.147595 CGAGGCCACGATGGAGGA 61.148 66.667 18.51 0.00 40.96 3.71
57 58 3.432051 GACGAGGCCACGATGGAGG 62.432 68.421 29.67 0.00 40.96 4.30
58 59 2.105128 GACGAGGCCACGATGGAG 59.895 66.667 29.67 0.00 40.96 3.86
59 60 3.822192 CGACGAGGCCACGATGGA 61.822 66.667 29.67 0.00 40.96 3.41
60 61 2.629050 ATTCGACGAGGCCACGATGG 62.629 60.000 29.67 16.31 41.55 3.51
61 62 0.030235 TATTCGACGAGGCCACGATG 59.970 55.000 29.67 19.27 36.02 3.84
62 63 0.959553 ATATTCGACGAGGCCACGAT 59.040 50.000 29.67 14.13 36.02 3.73
63 64 0.309922 GATATTCGACGAGGCCACGA 59.690 55.000 29.67 18.46 37.03 4.35
64 65 0.311165 AGATATTCGACGAGGCCACG 59.689 55.000 21.59 21.59 39.31 4.94
65 66 2.395654 GAAGATATTCGACGAGGCCAC 58.604 52.381 5.01 0.00 0.00 5.01
66 67 1.340248 GGAAGATATTCGACGAGGCCA 59.660 52.381 5.01 0.00 0.00 5.36
67 68 1.614413 AGGAAGATATTCGACGAGGCC 59.386 52.381 0.00 0.00 0.00 5.19
68 69 2.666069 CGAGGAAGATATTCGACGAGGC 60.666 54.545 10.47 0.00 36.49 4.70
69 70 2.666069 GCGAGGAAGATATTCGACGAGG 60.666 54.545 17.13 0.00 36.49 4.63
70 71 2.576406 GCGAGGAAGATATTCGACGAG 58.424 52.381 17.13 0.36 36.49 4.18
71 72 1.266175 GGCGAGGAAGATATTCGACGA 59.734 52.381 17.13 0.00 36.49 4.20
72 73 1.001706 TGGCGAGGAAGATATTCGACG 60.002 52.381 11.28 11.28 45.04 5.12
73 74 2.608261 CCTGGCGAGGAAGATATTCGAC 60.608 54.545 9.58 0.00 42.93 4.20
74 75 1.613925 CCTGGCGAGGAAGATATTCGA 59.386 52.381 9.58 0.00 42.93 3.71
75 76 1.613925 TCCTGGCGAGGAAGATATTCG 59.386 52.381 16.03 0.00 46.19 3.34
85 86 2.548920 GGAACATAAGATCCTGGCGAGG 60.549 54.545 8.78 8.78 41.39 4.63
86 87 2.103094 TGGAACATAAGATCCTGGCGAG 59.897 50.000 0.00 0.00 37.58 5.03
87 88 2.115427 TGGAACATAAGATCCTGGCGA 58.885 47.619 0.00 0.00 37.58 5.54
88 89 2.620251 TGGAACATAAGATCCTGGCG 57.380 50.000 0.00 0.00 37.58 5.69
89 90 4.279420 GGATTTGGAACATAAGATCCTGGC 59.721 45.833 0.00 0.00 39.30 4.85
90 91 4.516698 CGGATTTGGAACATAAGATCCTGG 59.483 45.833 0.00 0.00 39.30 4.45
91 92 4.023707 GCGGATTTGGAACATAAGATCCTG 60.024 45.833 0.00 0.00 39.30 3.86
92 93 4.137543 GCGGATTTGGAACATAAGATCCT 58.862 43.478 0.00 0.00 39.30 3.24
93 94 3.253432 GGCGGATTTGGAACATAAGATCC 59.747 47.826 0.00 0.00 39.30 3.36
94 95 3.253432 GGGCGGATTTGGAACATAAGATC 59.747 47.826 0.00 0.00 39.30 2.75
95 96 3.117512 AGGGCGGATTTGGAACATAAGAT 60.118 43.478 0.00 0.00 39.30 2.40
96 97 2.241176 AGGGCGGATTTGGAACATAAGA 59.759 45.455 0.00 0.00 39.30 2.10
97 98 2.618709 GAGGGCGGATTTGGAACATAAG 59.381 50.000 0.00 0.00 39.30 1.73
98 99 2.650322 GAGGGCGGATTTGGAACATAA 58.350 47.619 0.00 0.00 39.30 1.90
99 100 1.133915 GGAGGGCGGATTTGGAACATA 60.134 52.381 0.00 0.00 39.30 2.29
100 101 0.395724 GGAGGGCGGATTTGGAACAT 60.396 55.000 0.00 0.00 39.30 2.71
101 102 1.001393 GGAGGGCGGATTTGGAACA 60.001 57.895 0.00 0.00 0.00 3.18
102 103 0.323451 AAGGAGGGCGGATTTGGAAC 60.323 55.000 0.00 0.00 0.00 3.62
103 104 0.407918 AAAGGAGGGCGGATTTGGAA 59.592 50.000 0.00 0.00 0.00 3.53
104 105 0.323360 CAAAGGAGGGCGGATTTGGA 60.323 55.000 0.00 0.00 0.00 3.53
105 106 1.322538 CCAAAGGAGGGCGGATTTGG 61.323 60.000 7.45 7.45 44.00 3.28
106 107 1.948721 GCCAAAGGAGGGCGGATTTG 61.949 60.000 0.00 0.00 42.39 2.32
107 108 1.682344 GCCAAAGGAGGGCGGATTT 60.682 57.895 0.00 0.00 42.39 2.17
108 109 2.043953 GCCAAAGGAGGGCGGATT 60.044 61.111 0.00 0.00 42.39 3.01
114 115 0.322906 GAGGACTTGCCAAAGGAGGG 60.323 60.000 0.00 0.00 40.02 4.30
115 116 0.674895 CGAGGACTTGCCAAAGGAGG 60.675 60.000 0.00 0.00 40.02 4.30
116 117 1.301677 GCGAGGACTTGCCAAAGGAG 61.302 60.000 0.00 0.00 40.02 3.69
117 118 1.302511 GCGAGGACTTGCCAAAGGA 60.303 57.895 0.00 0.00 40.02 3.36
118 119 0.962356 ATGCGAGGACTTGCCAAAGG 60.962 55.000 8.97 0.00 39.22 3.11
119 120 1.737838 TATGCGAGGACTTGCCAAAG 58.262 50.000 8.97 0.00 39.22 2.77
120 121 2.418368 ATATGCGAGGACTTGCCAAA 57.582 45.000 8.97 0.00 39.22 3.28
121 122 2.418368 AATATGCGAGGACTTGCCAA 57.582 45.000 8.97 0.00 39.22 4.52
122 123 2.288666 GAAATATGCGAGGACTTGCCA 58.711 47.619 8.97 0.00 39.22 4.92
123 124 2.288666 TGAAATATGCGAGGACTTGCC 58.711 47.619 8.97 0.00 39.22 4.52
124 125 3.685058 GTTGAAATATGCGAGGACTTGC 58.315 45.455 4.58 4.58 40.38 4.01
125 126 3.370978 ACGTTGAAATATGCGAGGACTTG 59.629 43.478 0.00 0.00 0.00 3.16
126 127 3.596214 ACGTTGAAATATGCGAGGACTT 58.404 40.909 0.00 0.00 0.00 3.01
127 128 3.187700 GACGTTGAAATATGCGAGGACT 58.812 45.455 0.00 0.00 0.00 3.85
128 129 2.034842 CGACGTTGAAATATGCGAGGAC 60.035 50.000 0.00 0.00 0.00 3.85
129 130 2.190161 CGACGTTGAAATATGCGAGGA 58.810 47.619 0.00 0.00 0.00 3.71
130 131 1.332028 GCGACGTTGAAATATGCGAGG 60.332 52.381 7.08 0.00 0.00 4.63
131 132 1.650961 CGCGACGTTGAAATATGCGAG 60.651 52.381 7.08 0.00 46.29 5.03
132 133 0.296349 CGCGACGTTGAAATATGCGA 59.704 50.000 7.08 0.00 46.29 5.10
133 134 0.650476 CCGCGACGTTGAAATATGCG 60.650 55.000 8.23 4.86 43.34 4.73
134 135 0.648441 TCCGCGACGTTGAAATATGC 59.352 50.000 8.23 0.00 0.00 3.14
135 136 2.794910 AGATCCGCGACGTTGAAATATG 59.205 45.455 8.23 0.00 0.00 1.78
136 137 3.050619 GAGATCCGCGACGTTGAAATAT 58.949 45.455 8.23 0.00 0.00 1.28
137 138 2.456989 GAGATCCGCGACGTTGAAATA 58.543 47.619 8.23 0.00 0.00 1.40
138 139 1.278238 GAGATCCGCGACGTTGAAAT 58.722 50.000 8.23 0.00 0.00 2.17
139 140 1.068832 CGAGATCCGCGACGTTGAAA 61.069 55.000 8.23 0.00 0.00 2.69
140 141 1.513373 CGAGATCCGCGACGTTGAA 60.513 57.895 8.23 0.00 0.00 2.69
141 142 2.099638 CGAGATCCGCGACGTTGA 59.900 61.111 8.23 0.00 0.00 3.18
142 143 2.202440 ACGAGATCCGCGACGTTG 60.202 61.111 8.23 0.00 43.32 4.10
143 144 2.202440 CACGAGATCCGCGACGTT 60.202 61.111 8.23 0.00 43.32 3.99
144 145 4.831307 GCACGAGATCCGCGACGT 62.831 66.667 8.23 8.54 43.32 4.34
145 146 4.538283 AGCACGAGATCCGCGACG 62.538 66.667 8.23 7.86 43.32 5.12
146 147 2.652496 GAGCACGAGATCCGCGAC 60.652 66.667 8.23 0.00 43.32 5.19
147 148 4.237809 CGAGCACGAGATCCGCGA 62.238 66.667 8.23 0.00 43.32 5.87
149 150 4.933064 CCCGAGCACGAGATCCGC 62.933 72.222 4.70 0.00 43.32 5.54
150 151 3.471244 GACCCGAGCACGAGATCCG 62.471 68.421 4.70 2.55 42.66 4.18
151 152 0.818445 TAGACCCGAGCACGAGATCC 60.818 60.000 4.70 0.00 42.66 3.36
152 153 1.198178 GATAGACCCGAGCACGAGATC 59.802 57.143 4.70 0.00 42.66 2.75
153 154 1.240256 GATAGACCCGAGCACGAGAT 58.760 55.000 4.70 0.00 42.66 2.75
154 155 1.158484 CGATAGACCCGAGCACGAGA 61.158 60.000 4.70 0.00 39.57 4.04
155 156 1.280142 CGATAGACCCGAGCACGAG 59.720 63.158 4.70 0.00 39.57 4.18
156 157 2.831366 GCGATAGACCCGAGCACGA 61.831 63.158 4.70 0.00 39.57 4.35
157 158 2.353607 GCGATAGACCCGAGCACG 60.354 66.667 0.00 0.00 39.76 5.34
158 159 1.299468 CAGCGATAGACCCGAGCAC 60.299 63.158 0.00 0.00 39.76 4.40
159 160 3.120105 CAGCGATAGACCCGAGCA 58.880 61.111 0.00 0.00 39.76 4.26
160 161 2.355244 GCAGCGATAGACCCGAGC 60.355 66.667 0.00 0.00 39.76 5.03
161 162 2.336809 GGCAGCGATAGACCCGAG 59.663 66.667 0.00 0.00 39.76 4.63
162 163 2.441348 TGGCAGCGATAGACCCGA 60.441 61.111 0.00 0.00 39.76 5.14
163 164 2.279517 GTGGCAGCGATAGACCCG 60.280 66.667 0.00 0.00 39.76 5.28
164 165 2.109181 GGTGGCAGCGATAGACCC 59.891 66.667 0.00 0.00 39.76 4.46
165 166 1.521681 GTGGTGGCAGCGATAGACC 60.522 63.158 12.58 0.00 39.76 3.85
166 167 1.521681 GGTGGTGGCAGCGATAGAC 60.522 63.158 12.58 3.87 39.76 2.59
167 168 1.987306 TGGTGGTGGCAGCGATAGA 60.987 57.895 12.58 0.00 39.76 1.98
168 169 1.815421 GTGGTGGTGGCAGCGATAG 60.815 63.158 12.58 0.00 0.00 2.08
169 170 2.267642 GTGGTGGTGGCAGCGATA 59.732 61.111 12.58 0.00 0.00 2.92
170 171 4.722700 GGTGGTGGTGGCAGCGAT 62.723 66.667 12.58 0.00 0.00 4.58
173 174 3.574074 ATCAGGTGGTGGTGGCAGC 62.574 63.158 10.30 10.30 0.00 5.25
174 175 1.377725 GATCAGGTGGTGGTGGCAG 60.378 63.158 0.00 0.00 0.00 4.85
175 176 2.756400 GATCAGGTGGTGGTGGCA 59.244 61.111 0.00 0.00 0.00 4.92
176 177 2.044946 GGATCAGGTGGTGGTGGC 60.045 66.667 0.00 0.00 0.00 5.01
177 178 2.268920 CGGATCAGGTGGTGGTGG 59.731 66.667 0.00 0.00 0.00 4.61
178 179 2.436646 GCGGATCAGGTGGTGGTG 60.437 66.667 0.00 0.00 0.00 4.17
179 180 3.717294 GGCGGATCAGGTGGTGGT 61.717 66.667 0.00 0.00 0.00 4.16
180 181 4.838152 CGGCGGATCAGGTGGTGG 62.838 72.222 0.00 0.00 0.00 4.61
184 185 4.473520 AAGGCGGCGGATCAGGTG 62.474 66.667 9.78 0.00 0.00 4.00
185 186 4.162690 GAAGGCGGCGGATCAGGT 62.163 66.667 9.78 0.00 0.00 4.00
186 187 4.918201 GGAAGGCGGCGGATCAGG 62.918 72.222 9.78 0.00 0.00 3.86
187 188 2.947938 AATGGAAGGCGGCGGATCAG 62.948 60.000 9.78 0.00 0.00 2.90
188 189 2.940890 GAATGGAAGGCGGCGGATCA 62.941 60.000 9.78 1.36 0.00 2.92
189 190 2.203209 AATGGAAGGCGGCGGATC 60.203 61.111 9.78 3.49 0.00 3.36
190 191 2.203209 GAATGGAAGGCGGCGGAT 60.203 61.111 9.78 0.00 0.00 4.18
191 192 4.483243 GGAATGGAAGGCGGCGGA 62.483 66.667 9.78 0.00 0.00 5.54
192 193 4.794648 TGGAATGGAAGGCGGCGG 62.795 66.667 9.78 0.00 0.00 6.13
193 194 2.063541 GAATGGAATGGAAGGCGGCG 62.064 60.000 0.51 0.51 0.00 6.46
194 195 1.735973 GAATGGAATGGAAGGCGGC 59.264 57.895 0.00 0.00 0.00 6.53
195 196 1.109323 GGGAATGGAATGGAAGGCGG 61.109 60.000 0.00 0.00 0.00 6.13
196 197 0.395586 TGGGAATGGAATGGAAGGCG 60.396 55.000 0.00 0.00 0.00 5.52
197 198 1.114627 GTGGGAATGGAATGGAAGGC 58.885 55.000 0.00 0.00 0.00 4.35
198 199 2.102578 GTGTGGGAATGGAATGGAAGG 58.897 52.381 0.00 0.00 0.00 3.46
199 200 1.745087 CGTGTGGGAATGGAATGGAAG 59.255 52.381 0.00 0.00 0.00 3.46
200 201 1.832883 CGTGTGGGAATGGAATGGAA 58.167 50.000 0.00 0.00 0.00 3.53
201 202 0.679640 GCGTGTGGGAATGGAATGGA 60.680 55.000 0.00 0.00 0.00 3.41
202 203 1.809207 GCGTGTGGGAATGGAATGG 59.191 57.895 0.00 0.00 0.00 3.16
203 204 1.429021 CGCGTGTGGGAATGGAATG 59.571 57.895 0.00 0.00 0.00 2.67
204 205 2.406616 GCGCGTGTGGGAATGGAAT 61.407 57.895 8.43 0.00 0.00 3.01
205 206 3.053291 GCGCGTGTGGGAATGGAA 61.053 61.111 8.43 0.00 0.00 3.53
223 224 4.687215 ATCCGCGGCATGGATCCG 62.687 66.667 23.51 5.94 42.62 4.18
227 228 4.240103 CAGGATCCGCGGCATGGA 62.240 66.667 23.51 2.08 40.46 3.41
229 230 4.552365 ACCAGGATCCGCGGCATG 62.552 66.667 23.51 15.64 0.00 4.06
230 231 4.241555 GACCAGGATCCGCGGCAT 62.242 66.667 23.51 15.30 0.00 4.40
252 253 4.410400 CTCGGGGTTGGGTGGAGC 62.410 72.222 0.00 0.00 0.00 4.70
253 254 4.410400 GCTCGGGGTTGGGTGGAG 62.410 72.222 0.00 0.00 0.00 3.86
266 267 4.838152 CATGGTGACCGGGGCTCG 62.838 72.222 6.32 0.00 38.88 5.03
267 268 3.391665 CTCATGGTGACCGGGGCTC 62.392 68.421 6.32 0.00 0.00 4.70
268 269 3.402681 CTCATGGTGACCGGGGCT 61.403 66.667 6.32 0.00 0.00 5.19
269 270 3.682292 GACTCATGGTGACCGGGGC 62.682 68.421 6.32 0.00 0.00 5.80
270 271 2.584608 GACTCATGGTGACCGGGG 59.415 66.667 6.32 0.00 0.00 5.73
271 272 2.584608 GGACTCATGGTGACCGGG 59.415 66.667 6.32 0.00 0.00 5.73
272 273 2.584608 GGGACTCATGGTGACCGG 59.415 66.667 0.00 0.00 0.00 5.28
273 274 2.584608 GGGGACTCATGGTGACCG 59.415 66.667 0.00 0.00 0.00 4.79
274 275 2.998949 GGGGGACTCATGGTGACC 59.001 66.667 0.00 0.00 0.00 4.02
292 293 0.247460 TGATCTCACCAGTTCCGCAG 59.753 55.000 0.00 0.00 0.00 5.18
293 294 2.361189 TGATCTCACCAGTTCCGCA 58.639 52.632 0.00 0.00 0.00 5.69
655 656 4.785453 CTTGTCAGCCCCGCTCCC 62.785 72.222 0.00 0.00 36.40 4.30
656 657 2.180159 TTACTTGTCAGCCCCGCTCC 62.180 60.000 0.00 0.00 36.40 4.70
657 658 0.741221 CTTACTTGTCAGCCCCGCTC 60.741 60.000 0.00 0.00 36.40 5.03
658 659 1.296715 CTTACTTGTCAGCCCCGCT 59.703 57.895 0.00 0.00 40.77 5.52
659 660 0.605589 AACTTACTTGTCAGCCCCGC 60.606 55.000 0.00 0.00 0.00 6.13
660 661 1.892209 AAACTTACTTGTCAGCCCCG 58.108 50.000 0.00 0.00 0.00 5.73
661 662 2.956333 ACAAAACTTACTTGTCAGCCCC 59.044 45.455 0.00 0.00 31.29 5.80
662 663 3.380320 ACACAAAACTTACTTGTCAGCCC 59.620 43.478 0.00 0.00 34.80 5.19
663 664 4.632538 ACACAAAACTTACTTGTCAGCC 57.367 40.909 0.00 0.00 34.80 4.85
664 665 6.944557 AAAACACAAAACTTACTTGTCAGC 57.055 33.333 0.00 0.00 34.80 4.26
665 666 8.943925 CGATAAAACACAAAACTTACTTGTCAG 58.056 33.333 0.00 0.00 34.80 3.51
666 667 8.666573 TCGATAAAACACAAAACTTACTTGTCA 58.333 29.630 0.00 0.00 34.80 3.58
667 668 8.940924 GTCGATAAAACACAAAACTTACTTGTC 58.059 33.333 0.00 0.00 34.80 3.18
668 669 7.637132 CGTCGATAAAACACAAAACTTACTTGT 59.363 33.333 0.00 0.00 37.49 3.16
669 670 7.637132 ACGTCGATAAAACACAAAACTTACTTG 59.363 33.333 0.00 0.00 0.00 3.16
670 671 7.687445 ACGTCGATAAAACACAAAACTTACTT 58.313 30.769 0.00 0.00 0.00 2.24
671 672 7.010367 TGACGTCGATAAAACACAAAACTTACT 59.990 33.333 11.62 0.00 0.00 2.24
672 673 7.118724 TGACGTCGATAAAACACAAAACTTAC 58.881 34.615 11.62 0.00 0.00 2.34
673 674 7.231705 TGACGTCGATAAAACACAAAACTTA 57.768 32.000 11.62 0.00 0.00 2.24
674 675 6.109320 TGACGTCGATAAAACACAAAACTT 57.891 33.333 11.62 0.00 0.00 2.66
675 676 5.721876 TGACGTCGATAAAACACAAAACT 57.278 34.783 11.62 0.00 0.00 2.66
676 677 6.777827 TTTGACGTCGATAAAACACAAAAC 57.222 33.333 11.62 0.00 0.00 2.43
677 678 7.972623 AATTTGACGTCGATAAAACACAAAA 57.027 28.000 11.62 1.50 31.50 2.44
678 679 8.945930 GTTAATTTGACGTCGATAAAACACAAA 58.054 29.630 11.62 2.70 31.92 2.83
679 680 7.318439 CGTTAATTTGACGTCGATAAAACACAA 59.682 33.333 11.62 0.00 35.88 3.33
680 681 6.786573 CGTTAATTTGACGTCGATAAAACACA 59.213 34.615 11.62 0.00 35.88 3.72
681 682 7.003072 TCGTTAATTTGACGTCGATAAAACAC 58.997 34.615 11.62 4.28 41.08 3.32
682 683 7.103159 TCGTTAATTTGACGTCGATAAAACA 57.897 32.000 11.62 0.00 41.08 2.83
683 684 7.685304 ACATCGTTAATTTGACGTCGATAAAAC 59.315 33.333 11.62 11.69 41.08 2.43
684 685 7.731720 ACATCGTTAATTTGACGTCGATAAAA 58.268 30.769 11.62 6.16 41.08 1.52
685 686 7.280730 ACATCGTTAATTTGACGTCGATAAA 57.719 32.000 11.62 6.54 41.08 1.40
686 687 6.874297 ACATCGTTAATTTGACGTCGATAA 57.126 33.333 11.62 5.58 41.08 1.75
687 688 7.484324 TGTTACATCGTTAATTTGACGTCGATA 59.516 33.333 11.62 0.00 41.08 2.92
688 689 6.308524 TGTTACATCGTTAATTTGACGTCGAT 59.691 34.615 11.62 4.87 41.08 3.59
689 690 5.628606 TGTTACATCGTTAATTTGACGTCGA 59.371 36.000 11.62 6.16 41.08 4.20
690 691 5.834951 TGTTACATCGTTAATTTGACGTCG 58.165 37.500 11.62 8.13 41.08 5.12
691 692 7.742963 ACATTGTTACATCGTTAATTTGACGTC 59.257 33.333 9.11 9.11 41.08 4.34
692 693 7.577979 ACATTGTTACATCGTTAATTTGACGT 58.422 30.769 12.61 0.00 41.08 4.34
693 694 9.531412 TTACATTGTTACATCGTTAATTTGACG 57.469 29.630 7.34 7.34 41.62 4.35
730 731 9.985318 CATCAAAAGTACAAAGCATTTCAAAAA 57.015 25.926 0.00 0.00 35.03 1.94
731 732 9.376075 TCATCAAAAGTACAAAGCATTTCAAAA 57.624 25.926 0.00 0.00 35.03 2.44
732 733 8.939201 TCATCAAAAGTACAAAGCATTTCAAA 57.061 26.923 0.00 0.00 35.03 2.69
733 734 8.816144 GTTCATCAAAAGTACAAAGCATTTCAA 58.184 29.630 0.00 0.00 35.03 2.69
734 735 8.196771 AGTTCATCAAAAGTACAAAGCATTTCA 58.803 29.630 0.00 0.00 35.03 2.69
735 736 8.579682 AGTTCATCAAAAGTACAAAGCATTTC 57.420 30.769 0.00 0.00 35.03 2.17
736 737 8.947055 AAGTTCATCAAAAGTACAAAGCATTT 57.053 26.923 0.00 0.00 40.26 2.32
737 738 8.947055 AAAGTTCATCAAAAGTACAAAGCATT 57.053 26.923 0.00 0.00 0.00 3.56
738 739 8.947055 AAAAGTTCATCAAAAGTACAAAGCAT 57.053 26.923 0.00 0.00 0.00 3.79
739 740 8.770438 AAAAAGTTCATCAAAAGTACAAAGCA 57.230 26.923 0.00 0.00 0.00 3.91
742 743 9.291664 CGGTAAAAAGTTCATCAAAAGTACAAA 57.708 29.630 0.00 0.00 0.00 2.83
743 744 8.460428 ACGGTAAAAAGTTCATCAAAAGTACAA 58.540 29.630 0.00 0.00 0.00 2.41
744 745 7.987649 ACGGTAAAAAGTTCATCAAAAGTACA 58.012 30.769 0.00 0.00 0.00 2.90
751 752 8.092068 TCAGATCTACGGTAAAAAGTTCATCAA 58.908 33.333 0.00 0.00 0.00 2.57
763 764 5.205821 TGGAAAGGATCAGATCTACGGTAA 58.794 41.667 10.36 0.00 0.00 2.85
766 767 3.891977 TCTGGAAAGGATCAGATCTACGG 59.108 47.826 10.36 0.00 35.37 4.02
767 768 5.521906 TTCTGGAAAGGATCAGATCTACG 57.478 43.478 10.36 0.00 39.42 3.51
793 794 1.986882 CTGTCCTTGCAGGTCCTTTT 58.013 50.000 0.00 0.00 36.53 2.27
794 795 0.538287 GCTGTCCTTGCAGGTCCTTT 60.538 55.000 0.00 0.00 36.53 3.11
795 796 1.073897 GCTGTCCTTGCAGGTCCTT 59.926 57.895 0.00 0.00 36.53 3.36
796 797 1.845205 AGCTGTCCTTGCAGGTCCT 60.845 57.895 0.00 0.00 42.76 3.85
797 798 1.673665 CAGCTGTCCTTGCAGGTCC 60.674 63.158 5.25 0.00 44.27 4.46
828 829 6.478588 ACTCGATGCGAAAGATAACAAATTC 58.521 36.000 0.00 0.00 34.74 2.17
834 835 3.487574 CCAGACTCGATGCGAAAGATAAC 59.512 47.826 0.00 0.00 34.74 1.89
875 876 2.363018 CAGGGTCTCCTCGCCTCA 60.363 66.667 0.00 0.00 42.67 3.86
926 933 2.562296 TGTCATAGGAGGAGGCCTTTT 58.438 47.619 6.77 0.00 39.50 2.27
943 950 1.652563 GGGTTCGGCTGTTGTTGTC 59.347 57.895 0.00 0.00 0.00 3.18
980 987 4.554363 CTTCTCGGTCGCGGCGAT 62.554 66.667 28.95 0.00 38.42 4.58
1065 1079 1.447643 GAGTATGGTGGCGGATGCT 59.552 57.895 0.00 0.00 42.25 3.79
1378 1404 3.844090 GCCGAGGAGCAGGAGGAC 61.844 72.222 0.00 0.00 0.00 3.85
1680 1706 1.523258 CCTCTCAATGGCCAGCTCG 60.523 63.158 13.05 0.00 0.00 5.03
1877 1903 1.500396 GCCGTCGAATTGGGTGAAC 59.500 57.895 0.00 0.00 0.00 3.18
1935 1961 2.290514 TGACTCCCTGAGCCTTGAATTG 60.291 50.000 0.00 0.00 32.04 2.32
2202 2231 2.041966 GCGTAGACCGTCATGTAATCG 58.958 52.381 0.40 0.00 39.32 3.34
2205 2234 0.804364 ACGCGTAGACCGTCATGTAA 59.196 50.000 11.67 0.00 39.32 2.41
2214 2243 0.801067 CAAGGTAGCACGCGTAGACC 60.801 60.000 22.28 22.28 0.00 3.85
2266 2295 1.002746 TGCGGTAGAATGCCAGCAA 60.003 52.632 0.00 0.00 43.25 3.91
2325 2354 2.869801 TCTTGTGAGCACGTAAAACAGG 59.130 45.455 0.00 0.00 0.00 4.00
2359 2388 2.094597 TGGAGCACTGCATAACAAATGC 60.095 45.455 3.30 3.05 44.76 3.56
2386 2415 7.414222 AACATGGATGCTAAAACATCAGAAT 57.586 32.000 6.82 0.00 46.81 2.40
2419 2448 9.646522 AAGGCCTTGATTGTGAACTATAATAAT 57.353 29.630 19.73 0.00 0.00 1.28
2420 2449 9.120538 GAAGGCCTTGATTGTGAACTATAATAA 57.879 33.333 26.25 0.00 0.00 1.40
2421 2450 8.494433 AGAAGGCCTTGATTGTGAACTATAATA 58.506 33.333 26.25 0.00 0.00 0.98
2435 2464 1.005215 CCAACTGGAGAAGGCCTTGAT 59.995 52.381 26.25 11.66 37.39 2.57
2486 2515 2.064434 TTCACAAACATGGCCTGACA 57.936 45.000 3.32 0.00 0.00 3.58
2491 2520 2.888834 ACAGTTTCACAAACATGGCC 57.111 45.000 0.00 0.00 43.79 5.36
2523 2552 5.972973 GTCCGTATATCAACATGTCACGTAA 59.027 40.000 0.00 0.00 0.00 3.18
2527 2556 3.734231 CGGTCCGTATATCAACATGTCAC 59.266 47.826 2.08 0.00 0.00 3.67
2528 2557 3.243602 CCGGTCCGTATATCAACATGTCA 60.244 47.826 11.06 0.00 0.00 3.58
2585 2614 6.071952 GCAACTTCTTCCAAACATAGGAATCA 60.072 38.462 0.00 0.00 43.74 2.57
2589 2618 4.985538 AGCAACTTCTTCCAAACATAGGA 58.014 39.130 0.00 0.00 0.00 2.94
2591 2620 7.168135 GTCAAAAGCAACTTCTTCCAAACATAG 59.832 37.037 0.00 0.00 0.00 2.23
2595 2625 5.167845 TGTCAAAAGCAACTTCTTCCAAAC 58.832 37.500 0.00 0.00 0.00 2.93
2597 2627 5.126869 TCATGTCAAAAGCAACTTCTTCCAA 59.873 36.000 0.00 0.00 0.00 3.53
2616 2646 2.585330 TGTGCAATGACAGGTTCATGT 58.415 42.857 0.00 0.00 44.86 3.21
2617 2647 3.646611 TTGTGCAATGACAGGTTCATG 57.353 42.857 0.00 0.00 44.86 3.07
2648 2678 4.557690 CAGAGAAATCAAAGCAAGCATTCG 59.442 41.667 0.00 0.00 0.00 3.34
2650 2680 5.717078 TCAGAGAAATCAAAGCAAGCATT 57.283 34.783 0.00 0.00 0.00 3.56
2651 2681 5.916661 ATCAGAGAAATCAAAGCAAGCAT 57.083 34.783 0.00 0.00 0.00 3.79
2660 2690 9.860898 CATACCATACGATATCAGAGAAATCAA 57.139 33.333 3.12 0.00 0.00 2.57
2667 2697 6.691754 AGAGCATACCATACGATATCAGAG 57.308 41.667 3.12 0.00 0.00 3.35
2671 2701 9.291664 GAACTTAAGAGCATACCATACGATATC 57.708 37.037 10.09 0.00 0.00 1.63
2677 2707 6.422400 GCTGAGAACTTAAGAGCATACCATAC 59.578 42.308 10.09 0.00 0.00 2.39
2689 2719 2.762535 TTCCGGGCTGAGAACTTAAG 57.237 50.000 0.00 0.00 0.00 1.85
2691 2721 3.143728 GTTTTTCCGGGCTGAGAACTTA 58.856 45.455 0.00 0.00 0.00 2.24
2694 2724 1.314730 TGTTTTTCCGGGCTGAGAAC 58.685 50.000 0.00 0.00 0.00 3.01
2697 2727 1.743394 GGTATGTTTTTCCGGGCTGAG 59.257 52.381 0.00 0.00 0.00 3.35
2698 2728 1.074084 TGGTATGTTTTTCCGGGCTGA 59.926 47.619 0.00 0.00 0.00 4.26
2699 2729 1.472480 CTGGTATGTTTTTCCGGGCTG 59.528 52.381 0.00 0.00 0.00 4.85
2704 2734 1.129811 GCGGTCTGGTATGTTTTTCCG 59.870 52.381 0.00 0.00 39.71 4.30
2714 2744 3.628008 TCTTCTCTATTGCGGTCTGGTA 58.372 45.455 0.00 0.00 0.00 3.25
2716 2746 3.526931 TTCTTCTCTATTGCGGTCTGG 57.473 47.619 0.00 0.00 0.00 3.86
2723 2753 8.635877 TTTCGAGACTAATTCTTCTCTATTGC 57.364 34.615 12.24 0.00 36.82 3.56
2740 2770 6.254281 TCAAAATCCAAGGAATTTCGAGAC 57.746 37.500 0.00 0.00 0.00 3.36
2744 2774 5.391312 ACCTCAAAATCCAAGGAATTTCG 57.609 39.130 0.00 0.00 34.16 3.46
2745 2775 5.863935 CGAACCTCAAAATCCAAGGAATTTC 59.136 40.000 0.00 0.00 34.16 2.17
2801 2831 2.821991 ACAAGTTCTTCCCTGTCGAG 57.178 50.000 0.00 0.00 0.00 4.04
2802 2832 3.893200 TCTTACAAGTTCTTCCCTGTCGA 59.107 43.478 0.00 0.00 0.00 4.20
2804 2834 5.794894 TCATCTTACAAGTTCTTCCCTGTC 58.205 41.667 0.00 0.00 0.00 3.51
2830 2860 4.860907 CCTGAGCAACAAAATATCAAGTGC 59.139 41.667 0.00 0.00 0.00 4.40
2831 2861 5.404946 CCCTGAGCAACAAAATATCAAGTG 58.595 41.667 0.00 0.00 0.00 3.16
2832 2862 4.082026 GCCCTGAGCAACAAAATATCAAGT 60.082 41.667 0.00 0.00 42.97 3.16
2833 2863 4.427312 GCCCTGAGCAACAAAATATCAAG 58.573 43.478 0.00 0.00 42.97 3.02
2834 2864 3.195396 GGCCCTGAGCAACAAAATATCAA 59.805 43.478 0.00 0.00 46.50 2.57
2835 2865 2.760092 GGCCCTGAGCAACAAAATATCA 59.240 45.455 0.00 0.00 46.50 2.15
2836 2866 2.760092 TGGCCCTGAGCAACAAAATATC 59.240 45.455 0.00 0.00 46.50 1.63
2837 2867 2.497273 GTGGCCCTGAGCAACAAAATAT 59.503 45.455 0.00 0.00 45.71 1.28
2838 2868 1.892474 GTGGCCCTGAGCAACAAAATA 59.108 47.619 0.00 0.00 45.71 1.40
2839 2869 0.681175 GTGGCCCTGAGCAACAAAAT 59.319 50.000 0.00 0.00 45.71 1.82
2852 2882 2.224548 ACTTTCTAACAGTGAGTGGCCC 60.225 50.000 0.00 0.00 0.00 5.80
2854 2884 6.803154 ATTTACTTTCTAACAGTGAGTGGC 57.197 37.500 0.00 0.00 0.00 5.01
2856 2886 9.760660 GCATAATTTACTTTCTAACAGTGAGTG 57.239 33.333 0.00 0.00 0.00 3.51
2857 2887 9.726438 AGCATAATTTACTTTCTAACAGTGAGT 57.274 29.630 0.00 0.00 0.00 3.41
2858 2888 9.979270 CAGCATAATTTACTTTCTAACAGTGAG 57.021 33.333 0.00 0.00 0.00 3.51
2859 2889 9.502091 ACAGCATAATTTACTTTCTAACAGTGA 57.498 29.630 0.00 0.00 0.00 3.41
2864 2894 9.556030 GGTGAACAGCATAATTTACTTTCTAAC 57.444 33.333 0.00 0.00 0.00 2.34
2865 2895 9.515226 AGGTGAACAGCATAATTTACTTTCTAA 57.485 29.630 6.76 0.00 0.00 2.10
2866 2896 9.515226 AAGGTGAACAGCATAATTTACTTTCTA 57.485 29.630 6.76 0.00 0.00 2.10
2867 2897 8.409358 AAGGTGAACAGCATAATTTACTTTCT 57.591 30.769 6.76 0.00 0.00 2.52
2874 2904 8.592809 TGGAAATTAAGGTGAACAGCATAATTT 58.407 29.630 25.33 25.33 46.26 1.82
2875 2905 8.133024 TGGAAATTAAGGTGAACAGCATAATT 57.867 30.769 16.10 16.10 41.45 1.40
2876 2906 7.716799 TGGAAATTAAGGTGAACAGCATAAT 57.283 32.000 6.76 7.52 35.18 1.28
2877 2907 7.716799 ATGGAAATTAAGGTGAACAGCATAA 57.283 32.000 6.76 5.62 0.00 1.90
2878 2908 8.995027 ATATGGAAATTAAGGTGAACAGCATA 57.005 30.769 6.76 0.00 0.00 3.14
2879 2909 7.902920 ATATGGAAATTAAGGTGAACAGCAT 57.097 32.000 6.76 0.00 0.00 3.79
2880 2910 7.716799 AATATGGAAATTAAGGTGAACAGCA 57.283 32.000 6.76 0.00 0.00 4.41
2881 2911 9.683069 CATAATATGGAAATTAAGGTGAACAGC 57.317 33.333 0.00 0.00 0.00 4.40
2924 2954 4.949856 TGTGAGAGTTGCTTTCCTTTCTTT 59.050 37.500 0.00 0.00 0.00 2.52
2925 2955 4.526970 TGTGAGAGTTGCTTTCCTTTCTT 58.473 39.130 0.00 0.00 0.00 2.52
2927 2957 4.130118 TCTGTGAGAGTTGCTTTCCTTTC 58.870 43.478 0.00 0.00 0.00 2.62
2928 2958 4.156455 TCTGTGAGAGTTGCTTTCCTTT 57.844 40.909 0.00 0.00 0.00 3.11
2929 2959 3.845781 TCTGTGAGAGTTGCTTTCCTT 57.154 42.857 0.00 0.00 0.00 3.36
2931 2961 2.550180 GGTTCTGTGAGAGTTGCTTTCC 59.450 50.000 0.00 0.00 0.00 3.13
2933 2963 2.173569 AGGGTTCTGTGAGAGTTGCTTT 59.826 45.455 0.00 0.00 0.00 3.51
2934 2964 1.771255 AGGGTTCTGTGAGAGTTGCTT 59.229 47.619 0.00 0.00 0.00 3.91
2935 2965 1.428869 AGGGTTCTGTGAGAGTTGCT 58.571 50.000 0.00 0.00 0.00 3.91
2936 2966 3.067833 GTTAGGGTTCTGTGAGAGTTGC 58.932 50.000 0.00 0.00 0.00 4.17
2937 2967 3.325135 AGGTTAGGGTTCTGTGAGAGTTG 59.675 47.826 0.00 0.00 0.00 3.16
2938 2968 3.588569 AGGTTAGGGTTCTGTGAGAGTT 58.411 45.455 0.00 0.00 0.00 3.01
2939 2969 3.261818 AGGTTAGGGTTCTGTGAGAGT 57.738 47.619 0.00 0.00 0.00 3.24
2940 2970 4.319177 CAAAGGTTAGGGTTCTGTGAGAG 58.681 47.826 0.00 0.00 0.00 3.20
2941 2971 3.072476 CCAAAGGTTAGGGTTCTGTGAGA 59.928 47.826 0.00 0.00 0.00 3.27
2942 2972 3.072476 TCCAAAGGTTAGGGTTCTGTGAG 59.928 47.826 0.00 0.00 0.00 3.51
2943 2973 3.050089 TCCAAAGGTTAGGGTTCTGTGA 58.950 45.455 0.00 0.00 0.00 3.58
2970 3000 6.019479 TGCAAAAAGTATGGCTTTGTTTTACG 60.019 34.615 0.00 0.00 45.91 3.18
2988 3018 3.393089 AGTTGTGGTTGTGTGCAAAAA 57.607 38.095 0.00 0.00 36.22 1.94
2994 3024 2.872245 CTCCAGTAGTTGTGGTTGTGTG 59.128 50.000 0.00 0.00 36.37 3.82
3026 3066 4.098055 TGTTGAGAGAGCGAATGTAGTC 57.902 45.455 0.00 0.00 0.00 2.59
3028 3068 4.739228 CAGATGTTGAGAGAGCGAATGTAG 59.261 45.833 0.00 0.00 0.00 2.74
3029 3069 4.440663 CCAGATGTTGAGAGAGCGAATGTA 60.441 45.833 0.00 0.00 0.00 2.29
3030 3070 3.519579 CAGATGTTGAGAGAGCGAATGT 58.480 45.455 0.00 0.00 0.00 2.71
3032 3072 2.762887 TCCAGATGTTGAGAGAGCGAAT 59.237 45.455 0.00 0.00 0.00 3.34
3033 3073 2.094494 GTCCAGATGTTGAGAGAGCGAA 60.094 50.000 0.00 0.00 0.00 4.70
3034 3074 1.474478 GTCCAGATGTTGAGAGAGCGA 59.526 52.381 0.00 0.00 0.00 4.93
3035 3075 1.203287 TGTCCAGATGTTGAGAGAGCG 59.797 52.381 0.00 0.00 0.00 5.03
3036 3076 2.999355 GTTGTCCAGATGTTGAGAGAGC 59.001 50.000 0.00 0.00 0.00 4.09
3037 3077 3.993081 GTGTTGTCCAGATGTTGAGAGAG 59.007 47.826 0.00 0.00 0.00 3.20
3038 3078 3.244215 GGTGTTGTCCAGATGTTGAGAGA 60.244 47.826 0.00 0.00 0.00 3.10
3039 3079 3.070018 GGTGTTGTCCAGATGTTGAGAG 58.930 50.000 0.00 0.00 0.00 3.20
3040 3080 2.705658 AGGTGTTGTCCAGATGTTGAGA 59.294 45.455 0.00 0.00 0.00 3.27
3041 3081 3.131709 AGGTGTTGTCCAGATGTTGAG 57.868 47.619 0.00 0.00 0.00 3.02
3042 3082 4.698201 TTAGGTGTTGTCCAGATGTTGA 57.302 40.909 0.00 0.00 0.00 3.18
3043 3083 5.003160 TCATTAGGTGTTGTCCAGATGTTG 58.997 41.667 0.00 0.00 0.00 3.33
3044 3084 5.003804 GTCATTAGGTGTTGTCCAGATGTT 58.996 41.667 0.00 0.00 0.00 2.71
3045 3085 4.565652 GGTCATTAGGTGTTGTCCAGATGT 60.566 45.833 0.00 0.00 0.00 3.06
3046 3086 3.941483 GGTCATTAGGTGTTGTCCAGATG 59.059 47.826 0.00 0.00 0.00 2.90
3047 3087 3.846588 AGGTCATTAGGTGTTGTCCAGAT 59.153 43.478 0.00 0.00 0.00 2.90
3048 3088 3.248024 AGGTCATTAGGTGTTGTCCAGA 58.752 45.455 0.00 0.00 0.00 3.86
3049 3089 3.600388 GAGGTCATTAGGTGTTGTCCAG 58.400 50.000 0.00 0.00 0.00 3.86
3050 3090 2.304761 GGAGGTCATTAGGTGTTGTCCA 59.695 50.000 0.00 0.00 0.00 4.02
3051 3091 2.304761 TGGAGGTCATTAGGTGTTGTCC 59.695 50.000 0.00 0.00 0.00 4.02
3052 3092 3.260884 TCTGGAGGTCATTAGGTGTTGTC 59.739 47.826 0.00 0.00 0.00 3.18
3053 3093 3.248024 TCTGGAGGTCATTAGGTGTTGT 58.752 45.455 0.00 0.00 0.00 3.32
3054 3094 3.261897 ACTCTGGAGGTCATTAGGTGTTG 59.738 47.826 2.58 0.00 0.00 3.33
3071 3111 5.096443 AGGCTCCTATTTCTTCAACTCTG 57.904 43.478 0.00 0.00 0.00 3.35
3106 3146 9.327731 GCCTACCTAAGCCCTTGATATATATAT 57.672 37.037 4.86 4.86 0.00 0.86
3107 3147 7.733501 GGCCTACCTAAGCCCTTGATATATATA 59.266 40.741 0.00 0.00 43.76 0.86
3109 3149 5.903589 GGCCTACCTAAGCCCTTGATATATA 59.096 44.000 0.00 0.00 43.76 0.86
3111 3151 4.101856 GGCCTACCTAAGCCCTTGATATA 58.898 47.826 0.00 0.00 43.76 0.86
3112 3152 2.913617 GGCCTACCTAAGCCCTTGATAT 59.086 50.000 0.00 0.00 43.76 1.63
3113 3153 2.335933 GGCCTACCTAAGCCCTTGATA 58.664 52.381 0.00 0.00 43.76 2.15
3128 3168 4.072131 GTCTCATGTTTCAAAGTGGCCTA 58.928 43.478 3.32 0.00 0.00 3.93
3151 3191 5.449177 CCGATATCGTATCAGCATTAGAGCA 60.449 44.000 22.81 0.00 37.74 4.26
3155 3195 6.020281 GCTTTCCGATATCGTATCAGCATTAG 60.020 42.308 22.81 4.06 37.74 1.73
3157 3197 4.627467 GCTTTCCGATATCGTATCAGCATT 59.373 41.667 22.81 0.00 37.74 3.56
3159 3199 3.005367 TGCTTTCCGATATCGTATCAGCA 59.995 43.478 23.67 23.67 35.42 4.41
3181 3221 5.637127 TGGTCAATGGATCATGCAGATAAT 58.363 37.500 0.00 0.00 37.00 1.28
3202 3242 5.276270 CGCCTTTCTGATGAACAAATATGG 58.724 41.667 0.00 0.00 31.02 2.74
3210 3250 0.179179 GCAGCGCCTTTCTGATGAAC 60.179 55.000 2.29 0.00 33.54 3.18
3224 3264 3.062763 CTGTTCCTTATATCCAGCAGCG 58.937 50.000 0.00 0.00 0.00 5.18
3236 3276 9.567776 TTCAAATGATTTGTAGTCTGTTCCTTA 57.432 29.630 16.62 0.00 41.36 2.69
3245 3285 8.352942 ACCTTTCTGTTCAAATGATTTGTAGTC 58.647 33.333 16.62 7.37 41.36 2.59
3256 3296 4.037208 CAGTCAGCACCTTTCTGTTCAAAT 59.963 41.667 0.00 0.00 33.48 2.32
3260 3300 1.876156 CCAGTCAGCACCTTTCTGTTC 59.124 52.381 0.00 0.00 33.48 3.18
3276 3316 6.852420 TTGTAGTCTGCTCTTTATACCAGT 57.148 37.500 0.00 0.00 0.00 4.00
3284 3324 7.934855 ATCAATGATTTGTAGTCTGCTCTTT 57.065 32.000 0.00 0.00 34.32 2.52
3347 3389 5.759763 GGACTGAAACCAAATTGCAGAAATT 59.240 36.000 1.56 0.00 40.32 1.82
3355 3397 3.636300 TCCACAGGACTGAAACCAAATTG 59.364 43.478 6.29 0.00 0.00 2.32
3367 3409 4.221703 CAGACTGATAGTTTCCACAGGACT 59.778 45.833 0.00 0.00 35.08 3.85
3371 3413 5.139435 TGTCAGACTGATAGTTTCCACAG 57.861 43.478 8.73 0.00 36.58 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.