Multiple sequence alignment - TraesCS4A01G237200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G237200 chr4A 100.000 4498 0 0 1 4498 546016711 546021208 0.000000e+00 8307.0
1 TraesCS4A01G237200 chr4D 91.560 3116 157 47 585 3656 50978117 50975064 0.000000e+00 4200.0
2 TraesCS4A01G237200 chr4D 74.560 739 144 34 3703 4424 497635208 497634497 2.650000e-72 283.0
3 TraesCS4A01G237200 chr4B 92.906 1452 67 23 695 2126 75041275 75039840 0.000000e+00 2078.0
4 TraesCS4A01G237200 chr4B 94.664 1012 47 4 2152 3163 75039449 75038445 0.000000e+00 1563.0
5 TraesCS4A01G237200 chr4B 94.655 449 20 3 3208 3656 75038445 75038001 0.000000e+00 693.0
6 TraesCS4A01G237200 chr5D 88.073 545 60 3 1 540 459145445 459144901 3.790000e-180 641.0
7 TraesCS4A01G237200 chr5D 83.395 542 79 9 1085 1618 89045338 89045876 4.040000e-135 492.0
8 TraesCS4A01G237200 chr5D 80.000 125 25 0 3316 3440 89048674 89048798 4.790000e-15 93.5
9 TraesCS4A01G237200 chr2D 86.237 574 74 3 1 572 73486475 73487045 6.390000e-173 617.0
10 TraesCS4A01G237200 chr5B 83.438 634 87 11 1 631 559722823 559723441 1.400000e-159 573.0
11 TraesCS4A01G237200 chr5B 83.333 540 81 7 1088 1620 95023308 95022771 1.450000e-134 490.0
12 TraesCS4A01G237200 chr3B 86.000 550 60 7 74 608 507278727 507278180 1.400000e-159 573.0
13 TraesCS4A01G237200 chr1D 83.333 624 84 10 1 611 88219623 88220239 3.930000e-155 558.0
14 TraesCS4A01G237200 chr3D 84.146 574 82 6 2 569 612310354 612309784 8.510000e-152 547.0
15 TraesCS4A01G237200 chr2B 84.517 549 80 3 1 547 724735927 724735382 5.120000e-149 538.0
16 TraesCS4A01G237200 chr3A 83.101 574 91 4 1 572 27047343 27046774 6.670000e-143 518.0
17 TraesCS4A01G237200 chr5A 83.985 537 71 10 1085 1609 82982249 82982782 6.720000e-138 501.0
18 TraesCS4A01G237200 chr1B 82.796 558 85 8 1 551 41596735 41597288 5.230000e-134 488.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G237200 chr4A 546016711 546021208 4497 False 8307.000000 8307 100.0000 1 4498 1 chr4A.!!$F1 4497
1 TraesCS4A01G237200 chr4D 50975064 50978117 3053 True 4200.000000 4200 91.5600 585 3656 1 chr4D.!!$R1 3071
2 TraesCS4A01G237200 chr4D 497634497 497635208 711 True 283.000000 283 74.5600 3703 4424 1 chr4D.!!$R2 721
3 TraesCS4A01G237200 chr4B 75038001 75041275 3274 True 1444.666667 2078 94.0750 695 3656 3 chr4B.!!$R1 2961
4 TraesCS4A01G237200 chr5D 459144901 459145445 544 True 641.000000 641 88.0730 1 540 1 chr5D.!!$R1 539
5 TraesCS4A01G237200 chr5D 89045338 89048798 3460 False 292.750000 492 81.6975 1085 3440 2 chr5D.!!$F1 2355
6 TraesCS4A01G237200 chr2D 73486475 73487045 570 False 617.000000 617 86.2370 1 572 1 chr2D.!!$F1 571
7 TraesCS4A01G237200 chr5B 559722823 559723441 618 False 573.000000 573 83.4380 1 631 1 chr5B.!!$F1 630
8 TraesCS4A01G237200 chr5B 95022771 95023308 537 True 490.000000 490 83.3330 1088 1620 1 chr5B.!!$R1 532
9 TraesCS4A01G237200 chr3B 507278180 507278727 547 True 573.000000 573 86.0000 74 608 1 chr3B.!!$R1 534
10 TraesCS4A01G237200 chr1D 88219623 88220239 616 False 558.000000 558 83.3330 1 611 1 chr1D.!!$F1 610
11 TraesCS4A01G237200 chr3D 612309784 612310354 570 True 547.000000 547 84.1460 2 569 1 chr3D.!!$R1 567
12 TraesCS4A01G237200 chr2B 724735382 724735927 545 True 538.000000 538 84.5170 1 547 1 chr2B.!!$R1 546
13 TraesCS4A01G237200 chr3A 27046774 27047343 569 True 518.000000 518 83.1010 1 572 1 chr3A.!!$R1 571
14 TraesCS4A01G237200 chr5A 82982249 82982782 533 False 501.000000 501 83.9850 1085 1609 1 chr5A.!!$F1 524
15 TraesCS4A01G237200 chr1B 41596735 41597288 553 False 488.000000 488 82.7960 1 551 1 chr1B.!!$F1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
649 681 0.028642 ACATCCAATCCTAGCCCCCT 60.029 55.0 0.00 0.0 0.00 4.79 F
652 684 0.045623 TCCAATCCTAGCCCCCTTGA 59.954 55.0 0.00 0.0 0.00 3.02 F
663 695 0.181350 CCCCCTTGATAGGACTGCAC 59.819 60.0 0.00 0.0 45.05 4.57 F
854 893 0.323629 TTTCGGCCTCGTGGATTTCT 59.676 50.0 7.92 0.0 37.69 2.52 F
2147 2368 0.539051 ATCACCAGAGCTACTGCACC 59.461 55.0 7.44 0.0 44.52 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2130 2351 0.035317 TTGGTGCAGTAGCTCTGGTG 59.965 55.000 12.98 0.0 43.78 4.17 R
2215 3112 2.299297 AGGTAAGTCGAGTGGAACCTTG 59.701 50.000 13.72 0.0 37.80 3.61 R
2276 3423 3.826236 TTTCTCACTCCGTAGTTCTCG 57.174 47.619 0.00 0.0 31.97 4.04 R
2726 3882 0.039888 CGGTGCCGTAAAACCCTTTG 60.040 55.000 1.93 0.0 32.44 2.77 R
4073 5669 0.034863 GCTGGGTACGAAATTGGGGA 60.035 55.000 0.00 0.0 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.733960 CGACGGCGGAGACAGACA 61.734 66.667 13.24 0.00 27.25 3.41
67 68 1.271379 CCGGTGGAAGAATGTGAAGGT 60.271 52.381 0.00 0.00 0.00 3.50
102 103 4.103749 AGCAGTCCAAGCTCGAGA 57.896 55.556 18.75 0.00 38.01 4.04
341 356 4.969816 AGATCCGCGTTGTTTCAATTTAG 58.030 39.130 4.92 0.00 0.00 1.85
349 364 6.120157 GCGTTGTTTCAATTTAGTTTCAAGC 58.880 36.000 0.00 0.00 0.00 4.01
360 375 9.872757 CAATTTAGTTTCAAGCTTTAGACGTAA 57.127 29.630 0.00 0.00 0.00 3.18
376 391 5.734311 AGACGTAATTTCAAGTTGTTCGTG 58.266 37.500 2.11 0.00 0.00 4.35
379 394 5.523188 ACGTAATTTCAAGTTGTTCGTGGTA 59.477 36.000 2.11 0.00 0.00 3.25
460 492 3.129813 TGTCCGTTTGCTGATCTACGTAT 59.870 43.478 0.00 0.00 32.45 3.06
467 499 7.180079 CGTTTGCTGATCTACGTATTTTGATT 58.820 34.615 0.00 0.00 0.00 2.57
472 504 6.268797 TGATCTACGTATTTTGATTGACGC 57.731 37.500 0.00 0.00 38.86 5.19
520 552 5.333513 GGATCGAATATGAGATACACGGAC 58.666 45.833 0.00 0.00 0.00 4.79
540 572 1.135083 CGTGGACGAGGCTATTTGAGT 60.135 52.381 0.00 0.00 43.02 3.41
553 585 5.823045 GGCTATTTGAGTAGTGCCTTGTTAT 59.177 40.000 0.00 0.00 37.58 1.89
566 598 2.816520 GTTATTGCCCGCGGACGT 60.817 61.111 30.73 10.96 37.70 4.34
591 623 0.038892 GACACGTCAGGAGGCGTTTA 60.039 55.000 0.00 0.00 39.48 2.01
617 649 0.947244 CATATTTGTCCTCTGCGGCC 59.053 55.000 0.00 0.00 0.00 6.13
627 659 2.202932 CTGCGGCCGTAGATGCTT 60.203 61.111 36.37 0.00 0.00 3.91
631 663 0.303796 GCGGCCGTAGATGCTTTAAC 59.696 55.000 28.70 0.08 0.00 2.01
643 675 7.116948 CGTAGATGCTTTAACATCCAATCCTAG 59.883 40.741 1.06 0.00 46.29 3.02
647 679 3.876309 TTAACATCCAATCCTAGCCCC 57.124 47.619 0.00 0.00 0.00 5.80
649 681 0.028642 ACATCCAATCCTAGCCCCCT 60.029 55.000 0.00 0.00 0.00 4.79
650 682 1.152649 CATCCAATCCTAGCCCCCTT 58.847 55.000 0.00 0.00 0.00 3.95
652 684 0.045623 TCCAATCCTAGCCCCCTTGA 59.954 55.000 0.00 0.00 0.00 3.02
663 695 0.181350 CCCCCTTGATAGGACTGCAC 59.819 60.000 0.00 0.00 45.05 4.57
680 712 5.212194 ACTGCACGTAAAGCACTTAAATTG 58.788 37.500 0.00 0.00 37.02 2.32
685 717 6.362283 GCACGTAAAGCACTTAAATTGTGATT 59.638 34.615 0.00 0.00 44.42 2.57
854 893 0.323629 TTTCGGCCTCGTGGATTTCT 59.676 50.000 7.92 0.00 37.69 2.52
1657 1714 3.795877 CCAGTTGCCAAAATGTTTGAGT 58.204 40.909 2.30 0.00 29.30 3.41
1667 1724 6.366061 GCCAAAATGTTTGAGTTATTCTGGAC 59.634 38.462 2.30 0.00 0.00 4.02
1668 1725 7.661040 CCAAAATGTTTGAGTTATTCTGGACT 58.339 34.615 2.30 0.00 0.00 3.85
1669 1726 7.596248 CCAAAATGTTTGAGTTATTCTGGACTG 59.404 37.037 2.30 0.00 0.00 3.51
1670 1727 6.824305 AATGTTTGAGTTATTCTGGACTGG 57.176 37.500 0.00 0.00 0.00 4.00
1673 1730 5.306937 TGTTTGAGTTATTCTGGACTGGAGA 59.693 40.000 0.00 0.00 0.00 3.71
1675 1732 6.627087 TTGAGTTATTCTGGACTGGAGATT 57.373 37.500 0.00 0.00 0.00 2.40
1676 1733 6.627087 TGAGTTATTCTGGACTGGAGATTT 57.373 37.500 0.00 0.00 0.00 2.17
1677 1734 6.644347 TGAGTTATTCTGGACTGGAGATTTC 58.356 40.000 0.00 0.00 0.00 2.17
1684 1756 4.020751 TCTGGACTGGAGATTTCTTGTCAG 60.021 45.833 9.81 0.00 31.82 3.51
1707 1779 1.457346 CCAGAAATCTGTGGCTCACC 58.543 55.000 9.43 0.00 42.27 4.02
1725 1797 5.509498 CTCACCCCAAATCTTTAGGATGAA 58.491 41.667 0.00 0.00 34.45 2.57
1738 1810 1.351017 AGGATGAAACCGTCCATGTGT 59.649 47.619 6.47 0.00 41.24 3.72
1871 1945 3.048337 TGTGGTATCCTTTTGGTCGAC 57.952 47.619 7.13 7.13 41.38 4.20
1873 1947 3.071892 TGTGGTATCCTTTTGGTCGACTT 59.928 43.478 16.46 0.00 41.38 3.01
1874 1948 3.435671 GTGGTATCCTTTTGGTCGACTTG 59.564 47.826 16.46 1.56 41.38 3.16
1891 1965 1.811965 CTTGACCGGTGCATCATTCAA 59.188 47.619 14.63 6.34 0.00 2.69
1896 1970 2.627699 ACCGGTGCATCATTCAAAACTT 59.372 40.909 6.12 0.00 0.00 2.66
1907 1981 9.118236 GCATCATTCAAAACTTTTAGTCAGTAC 57.882 33.333 0.00 0.00 0.00 2.73
1915 1989 9.567848 CAAAACTTTTAGTCAGTACACATTTGT 57.432 29.630 0.00 0.00 40.02 2.83
1994 2076 0.608640 ACTTTGTAGGCGACCAGGAG 59.391 55.000 0.00 0.00 0.00 3.69
2005 2087 2.076863 CGACCAGGAGTGAACATTTCC 58.923 52.381 0.00 0.00 0.00 3.13
2011 2093 4.202441 CAGGAGTGAACATTTCCCTATGG 58.798 47.826 0.00 0.00 0.00 2.74
2012 2094 4.080356 CAGGAGTGAACATTTCCCTATGGA 60.080 45.833 0.00 0.00 39.54 3.41
2093 2178 5.229469 CACGAAAACTAGCATAGGAGTAACG 59.771 44.000 0.00 0.00 44.97 3.18
2104 2189 5.810587 GCATAGGAGTAACGACAGAAATGAA 59.189 40.000 0.00 0.00 0.00 2.57
2111 2196 6.715464 AGTAACGACAGAAATGAAGTTTGTG 58.285 36.000 0.00 0.00 44.32 3.33
2146 2367 1.066573 ACATCACCAGAGCTACTGCAC 60.067 52.381 7.44 0.00 44.52 4.57
2147 2368 0.539051 ATCACCAGAGCTACTGCACC 59.461 55.000 7.44 0.00 44.52 5.01
2148 2369 0.831711 TCACCAGAGCTACTGCACCA 60.832 55.000 7.44 0.00 44.52 4.17
2155 2383 3.077359 AGAGCTACTGCACCAACATTTC 58.923 45.455 0.00 0.00 42.74 2.17
2175 2928 4.191033 TCCAAATTGCTTGCTTACATGG 57.809 40.909 0.00 0.00 33.27 3.66
2179 2932 4.445452 AATTGCTTGCTTACATGGTGAG 57.555 40.909 0.00 0.00 0.00 3.51
2215 3112 8.569641 TGTTGTAGTTATTATTTGGGTGAACAC 58.430 33.333 0.00 0.00 0.00 3.32
2276 3423 9.643693 TTCATCAGCTTTATTTTTCTTTCCATC 57.356 29.630 0.00 0.00 0.00 3.51
2294 3441 2.756840 TCGAGAACTACGGAGTGAGA 57.243 50.000 0.00 0.00 45.73 3.27
2462 3618 7.649533 TTTGATCCACATTATTCTGCTTCAT 57.350 32.000 0.00 0.00 0.00 2.57
2470 3626 2.391616 ATTCTGCTTCATCTGACGCA 57.608 45.000 10.45 10.45 45.25 5.24
2474 3630 2.877786 TCTGCTTCATCTGACGCAAAAA 59.122 40.909 11.77 0.02 46.36 1.94
2484 3640 8.893219 TCATCTGACGCAAAAATAATCTCTAT 57.107 30.769 0.00 0.00 0.00 1.98
2594 3750 2.027745 TGTGTTCCTCCATTCTGCTCTC 60.028 50.000 0.00 0.00 0.00 3.20
2726 3882 1.764180 TTGTCACGACGGTTTTCGCC 61.764 55.000 0.00 0.00 43.06 5.54
2873 4029 2.922950 CGGCACAAGCAGCACCATT 61.923 57.895 0.00 0.00 44.61 3.16
2897 4053 1.653151 GAACCTATGCCGGACAGTTC 58.347 55.000 5.05 9.37 0.00 3.01
2987 4143 3.070060 GTGCCGACGATCGTTGTC 58.930 61.111 28.95 20.35 38.40 3.18
3178 4557 1.202222 CCGCTGATGCTGAAATCCAAC 60.202 52.381 0.00 0.00 36.97 3.77
3180 4559 2.095110 CGCTGATGCTGAAATCCAACAA 60.095 45.455 0.00 0.00 36.97 2.83
3183 4562 4.730657 CTGATGCTGAAATCCAACAAGTC 58.269 43.478 0.00 0.00 0.00 3.01
3189 4568 5.012664 TGCTGAAATCCAACAAGTCCTAGTA 59.987 40.000 0.00 0.00 0.00 1.82
3195 4574 5.209818 TCCAACAAGTCCTAGTAGTGTTG 57.790 43.478 18.03 18.03 45.47 3.33
3198 4577 5.924825 CCAACAAGTCCTAGTAGTGTTGTAC 59.075 44.000 21.01 0.00 44.78 2.90
3242 4697 6.348786 GCCAAATCATTATCAGTCGCACATAT 60.349 38.462 0.00 0.00 0.00 1.78
3247 4702 9.657419 AATCATTATCAGTCGCACATATGATTA 57.343 29.630 10.38 0.00 34.50 1.75
3499 5088 4.226427 AGGATGCTAGCTTCAAATGACA 57.774 40.909 26.51 0.00 0.00 3.58
3584 5176 1.419387 GCATAGAGGATTCCTGGTGCT 59.581 52.381 10.74 3.35 31.76 4.40
3586 5178 1.403814 TAGAGGATTCCTGGTGCTCG 58.596 55.000 10.74 0.00 38.84 5.03
3590 5182 1.648467 GGATTCCTGGTGCTCGTTGC 61.648 60.000 0.00 0.00 43.25 4.17
3639 5231 1.620819 AGATCCGATCGAGATTTGGGG 59.379 52.381 18.66 0.00 0.00 4.96
3656 5248 8.061304 AGATTTGGGGTATCACATTGTAGATTT 58.939 33.333 6.93 0.00 0.00 2.17
3657 5249 7.403312 TTTGGGGTATCACATTGTAGATTTG 57.597 36.000 6.93 0.00 0.00 2.32
3658 5250 6.073447 TGGGGTATCACATTGTAGATTTGT 57.927 37.500 6.93 0.00 0.00 2.83
3659 5251 7.201702 TGGGGTATCACATTGTAGATTTGTA 57.798 36.000 6.93 0.00 0.00 2.41
3660 5252 7.634718 TGGGGTATCACATTGTAGATTTGTAA 58.365 34.615 6.93 0.00 0.00 2.41
3661 5253 7.773224 TGGGGTATCACATTGTAGATTTGTAAG 59.227 37.037 6.93 0.00 0.00 2.34
3662 5254 7.228706 GGGGTATCACATTGTAGATTTGTAAGG 59.771 40.741 6.93 0.00 0.00 2.69
3663 5255 7.990886 GGGTATCACATTGTAGATTTGTAAGGA 59.009 37.037 6.93 0.00 0.00 3.36
3664 5256 8.827677 GGTATCACATTGTAGATTTGTAAGGAC 58.172 37.037 6.93 0.00 0.00 3.85
3665 5257 9.601217 GTATCACATTGTAGATTTGTAAGGACT 57.399 33.333 6.93 0.00 0.00 3.85
3666 5258 7.905604 TCACATTGTAGATTTGTAAGGACTG 57.094 36.000 0.00 0.00 0.00 3.51
3667 5259 6.371548 TCACATTGTAGATTTGTAAGGACTGC 59.628 38.462 0.00 0.00 0.00 4.40
3668 5260 6.149308 CACATTGTAGATTTGTAAGGACTGCA 59.851 38.462 0.00 0.00 0.00 4.41
3669 5261 6.372659 ACATTGTAGATTTGTAAGGACTGCAG 59.627 38.462 13.48 13.48 0.00 4.41
3670 5262 4.253685 TGTAGATTTGTAAGGACTGCAGC 58.746 43.478 15.27 6.61 0.00 5.25
3671 5263 2.350522 AGATTTGTAAGGACTGCAGCG 58.649 47.619 15.27 0.00 0.00 5.18
3672 5264 0.804989 ATTTGTAAGGACTGCAGCGC 59.195 50.000 15.27 0.00 0.00 5.92
3673 5265 0.250295 TTTGTAAGGACTGCAGCGCT 60.250 50.000 15.27 2.64 0.00 5.92
3674 5266 0.950555 TTGTAAGGACTGCAGCGCTG 60.951 55.000 32.83 32.83 0.00 5.18
3675 5267 2.103042 GTAAGGACTGCAGCGCTGG 61.103 63.158 36.47 23.91 0.00 4.85
3676 5268 3.958147 TAAGGACTGCAGCGCTGGC 62.958 63.158 36.47 27.68 40.37 4.85
3701 5293 1.522569 CGTAGCCAGGGAGGAAAGG 59.477 63.158 0.00 0.00 41.22 3.11
3722 5314 1.278127 CGTAAAGCAGGGGAGGAGAAA 59.722 52.381 0.00 0.00 0.00 2.52
3726 5318 2.586792 CAGGGGAGGAGAAAGCGG 59.413 66.667 0.00 0.00 0.00 5.52
3727 5319 3.403558 AGGGGAGGAGAAAGCGGC 61.404 66.667 0.00 0.00 0.00 6.53
3731 5323 1.746991 GGAGGAGAAAGCGGCAAGG 60.747 63.158 1.45 0.00 0.00 3.61
3734 5326 1.194781 AGGAGAAAGCGGCAAGGAGA 61.195 55.000 1.45 0.00 0.00 3.71
3754 5346 2.130815 CGCGAGAGTGTTTGAATTCG 57.869 50.000 0.00 0.00 36.71 3.34
3757 5349 2.092838 GCGAGAGTGTTTGAATTCGAGG 59.907 50.000 0.04 0.00 0.00 4.63
3759 5351 3.003480 GAGAGTGTTTGAATTCGAGGGG 58.997 50.000 0.04 0.00 0.00 4.79
3760 5352 2.372172 AGAGTGTTTGAATTCGAGGGGT 59.628 45.455 0.04 0.00 0.00 4.95
3761 5353 2.484264 GAGTGTTTGAATTCGAGGGGTG 59.516 50.000 0.04 0.00 0.00 4.61
3762 5354 2.158667 AGTGTTTGAATTCGAGGGGTGT 60.159 45.455 0.04 0.00 0.00 4.16
3764 5356 1.463444 GTTTGAATTCGAGGGGTGTCG 59.537 52.381 0.04 0.00 41.51 4.35
3772 5364 4.640690 AGGGGTGTCGAGTGGGCT 62.641 66.667 0.00 0.00 0.00 5.19
3775 5367 2.280552 GGGTGTCGAGTGGGCTGTA 61.281 63.158 0.00 0.00 0.00 2.74
3813 5405 2.332654 GCCGTGGGCCTTGTAAGTG 61.333 63.158 4.53 0.00 44.06 3.16
3814 5406 1.072505 CCGTGGGCCTTGTAAGTGT 59.927 57.895 4.53 0.00 0.00 3.55
3816 5408 0.250124 CGTGGGCCTTGTAAGTGTGA 60.250 55.000 4.53 0.00 0.00 3.58
3819 5411 1.071699 TGGGCCTTGTAAGTGTGAGTC 59.928 52.381 4.53 0.00 0.00 3.36
3821 5413 1.429463 GCCTTGTAAGTGTGAGTCGG 58.571 55.000 0.00 0.00 0.00 4.79
3824 5416 2.609737 CCTTGTAAGTGTGAGTCGGACC 60.610 54.545 4.14 0.00 0.00 4.46
3826 5418 0.109412 GTAAGTGTGAGTCGGACCCG 60.109 60.000 4.14 1.31 41.35 5.28
3827 5419 0.538057 TAAGTGTGAGTCGGACCCGT 60.538 55.000 8.42 0.00 40.74 5.28
3828 5420 1.397390 AAGTGTGAGTCGGACCCGTT 61.397 55.000 8.42 0.00 40.74 4.44
3838 5432 2.982470 GTCGGACCCGTTTATATAAGCG 59.018 50.000 20.85 20.85 39.19 4.68
3841 5435 3.304928 CGGACCCGTTTATATAAGCGAGT 60.305 47.826 27.03 21.98 41.46 4.18
3844 5438 3.240069 CCCGTTTATATAAGCGAGTCGG 58.760 50.000 27.03 17.71 41.46 4.79
3845 5439 3.058016 CCCGTTTATATAAGCGAGTCGGA 60.058 47.826 27.03 0.00 41.46 4.55
3848 5442 4.491241 CGTTTATATAAGCGAGTCGGATCG 59.509 45.833 22.67 5.91 41.46 3.69
3864 5458 1.001293 GATCGCTGTGGATAGGCATCA 59.999 52.381 0.00 0.00 32.32 3.07
3866 5460 0.940126 CGCTGTGGATAGGCATCAAC 59.060 55.000 0.00 0.00 35.86 3.18
3875 5471 5.700832 GTGGATAGGCATCAACGATGAAATA 59.299 40.000 8.14 0.00 42.09 1.40
3876 5472 5.934043 TGGATAGGCATCAACGATGAAATAG 59.066 40.000 8.14 0.00 42.09 1.73
3878 5474 6.820656 GGATAGGCATCAACGATGAAATAGAT 59.179 38.462 8.14 0.00 42.09 1.98
3879 5475 7.010923 GGATAGGCATCAACGATGAAATAGATC 59.989 40.741 8.14 1.25 42.09 2.75
3883 5479 7.879677 AGGCATCAACGATGAAATAGATCATTA 59.120 33.333 8.14 0.00 42.09 1.90
3913 5509 0.032615 GCTCCTCCTTCCTCCTCTCA 60.033 60.000 0.00 0.00 0.00 3.27
3916 5512 2.512056 CTCCTCCTTCCTCCTCTCACTA 59.488 54.545 0.00 0.00 0.00 2.74
3917 5513 3.135279 TCCTCCTTCCTCCTCTCACTAT 58.865 50.000 0.00 0.00 0.00 2.12
3928 5524 5.073144 CCTCCTCTCACTATCTTCTCCTAGT 59.927 48.000 0.00 0.00 0.00 2.57
3930 5526 6.361433 TCCTCTCACTATCTTCTCCTAGTTG 58.639 44.000 0.00 0.00 0.00 3.16
3931 5527 6.069323 TCCTCTCACTATCTTCTCCTAGTTGT 60.069 42.308 0.00 0.00 0.00 3.32
3933 5529 7.397892 TCTCACTATCTTCTCCTAGTTGTTG 57.602 40.000 0.00 0.00 0.00 3.33
3934 5530 6.948886 TCTCACTATCTTCTCCTAGTTGTTGT 59.051 38.462 0.00 0.00 0.00 3.32
3936 5532 6.948886 TCACTATCTTCTCCTAGTTGTTGTCT 59.051 38.462 0.00 0.00 0.00 3.41
3937 5533 7.121463 TCACTATCTTCTCCTAGTTGTTGTCTC 59.879 40.741 0.00 0.00 0.00 3.36
3938 5534 7.122055 CACTATCTTCTCCTAGTTGTTGTCTCT 59.878 40.741 0.00 0.00 0.00 3.10
3939 5535 5.968528 TCTTCTCCTAGTTGTTGTCTCTC 57.031 43.478 0.00 0.00 0.00 3.20
3941 5537 3.432378 TCTCCTAGTTGTTGTCTCTCCC 58.568 50.000 0.00 0.00 0.00 4.30
3942 5538 3.076182 TCTCCTAGTTGTTGTCTCTCCCT 59.924 47.826 0.00 0.00 0.00 4.20
3943 5539 3.432378 TCCTAGTTGTTGTCTCTCCCTC 58.568 50.000 0.00 0.00 0.00 4.30
3944 5540 3.076182 TCCTAGTTGTTGTCTCTCCCTCT 59.924 47.826 0.00 0.00 0.00 3.69
3945 5541 3.445805 CCTAGTTGTTGTCTCTCCCTCTC 59.554 52.174 0.00 0.00 0.00 3.20
3946 5542 3.252554 AGTTGTTGTCTCTCCCTCTCT 57.747 47.619 0.00 0.00 0.00 3.10
3947 5543 4.390129 AGTTGTTGTCTCTCCCTCTCTA 57.610 45.455 0.00 0.00 0.00 2.43
3949 5545 3.088789 TGTTGTCTCTCCCTCTCTACC 57.911 52.381 0.00 0.00 0.00 3.18
3950 5546 2.378886 TGTTGTCTCTCCCTCTCTACCA 59.621 50.000 0.00 0.00 0.00 3.25
3951 5547 3.181422 TGTTGTCTCTCCCTCTCTACCAA 60.181 47.826 0.00 0.00 0.00 3.67
3952 5548 3.827817 TGTCTCTCCCTCTCTACCAAA 57.172 47.619 0.00 0.00 0.00 3.28
3953 5549 4.338795 TGTCTCTCCCTCTCTACCAAAT 57.661 45.455 0.00 0.00 0.00 2.32
3954 5550 4.689062 TGTCTCTCCCTCTCTACCAAATT 58.311 43.478 0.00 0.00 0.00 1.82
3955 5551 4.712337 TGTCTCTCCCTCTCTACCAAATTC 59.288 45.833 0.00 0.00 0.00 2.17
3956 5552 4.712337 GTCTCTCCCTCTCTACCAAATTCA 59.288 45.833 0.00 0.00 0.00 2.57
3957 5553 5.187967 GTCTCTCCCTCTCTACCAAATTCAA 59.812 44.000 0.00 0.00 0.00 2.69
3958 5554 5.785423 TCTCTCCCTCTCTACCAAATTCAAA 59.215 40.000 0.00 0.00 0.00 2.69
3959 5555 6.445139 TCTCTCCCTCTCTACCAAATTCAAAT 59.555 38.462 0.00 0.00 0.00 2.32
3963 5559 5.067023 CCCTCTCTACCAAATTCAAATCTGC 59.933 44.000 0.00 0.00 0.00 4.26
3964 5560 5.884792 CCTCTCTACCAAATTCAAATCTGCT 59.115 40.000 0.00 0.00 0.00 4.24
3966 5562 7.011857 CCTCTCTACCAAATTCAAATCTGCTAC 59.988 40.741 0.00 0.00 0.00 3.58
3971 5567 5.649831 ACCAAATTCAAATCTGCTACCTCTC 59.350 40.000 0.00 0.00 0.00 3.20
3972 5568 5.649395 CCAAATTCAAATCTGCTACCTCTCA 59.351 40.000 0.00 0.00 0.00 3.27
3974 5570 7.416022 CAAATTCAAATCTGCTACCTCTCATC 58.584 38.462 0.00 0.00 0.00 2.92
3975 5571 4.679373 TCAAATCTGCTACCTCTCATCC 57.321 45.455 0.00 0.00 0.00 3.51
3977 5573 1.626686 ATCTGCTACCTCTCATCCCG 58.373 55.000 0.00 0.00 0.00 5.14
3980 5576 0.185175 TGCTACCTCTCATCCCGCTA 59.815 55.000 0.00 0.00 0.00 4.26
3984 5580 0.032017 ACCTCTCATCCCGCTACCTT 60.032 55.000 0.00 0.00 0.00 3.50
3989 5585 1.227263 CATCCCGCTACCTTGTCGG 60.227 63.158 0.00 0.00 42.58 4.79
4007 5603 3.110178 CGACGAACCTTGGCCGAC 61.110 66.667 0.00 2.83 0.00 4.79
4012 5608 1.221021 GAACCTTGGCCGACCCTAG 59.779 63.158 0.00 0.00 36.37 3.02
4015 5611 3.400188 CTTGGCCGACCCTAGGTT 58.600 61.111 8.29 0.00 35.25 3.50
4038 5634 5.204292 TGTGACAATCTAGTATCAGAGCCT 58.796 41.667 0.00 0.00 0.00 4.58
4040 5636 5.534654 GTGACAATCTAGTATCAGAGCCTCT 59.465 44.000 0.00 0.00 0.00 3.69
4041 5637 5.767665 TGACAATCTAGTATCAGAGCCTCTC 59.232 44.000 0.00 0.00 0.00 3.20
4043 5639 5.162991 ACAATCTAGTATCAGAGCCTCTCCT 60.163 44.000 0.00 0.00 0.00 3.69
4046 5642 2.957474 AGTATCAGAGCCTCTCCTTCC 58.043 52.381 0.00 0.00 0.00 3.46
4047 5643 1.611491 GTATCAGAGCCTCTCCTTCCG 59.389 57.143 0.00 0.00 0.00 4.30
4048 5644 1.398958 ATCAGAGCCTCTCCTTCCGC 61.399 60.000 0.00 0.00 0.00 5.54
4049 5645 2.057408 CAGAGCCTCTCCTTCCGCT 61.057 63.158 0.00 0.00 0.00 5.52
4053 5649 4.560856 CCTCTCCTTCCGCTCGCG 62.561 72.222 0.00 0.00 39.44 5.87
4090 5686 1.659022 TCTCCCCAATTTCGTACCCA 58.341 50.000 0.00 0.00 0.00 4.51
4091 5687 1.557832 TCTCCCCAATTTCGTACCCAG 59.442 52.381 0.00 0.00 0.00 4.45
4100 5696 1.022451 TTCGTACCCAGCAAATCCGC 61.022 55.000 0.00 0.00 0.00 5.54
4102 5698 2.124901 TACCCAGCAAATCCGCGG 60.125 61.111 22.12 22.12 36.85 6.46
4106 5702 3.798650 CAGCAAATCCGCGGCGAA 61.799 61.111 25.92 2.62 36.85 4.70
4110 5706 2.359478 AAATCCGCGGCGAAGGTT 60.359 55.556 25.92 7.71 0.00 3.50
4111 5707 1.078988 AAATCCGCGGCGAAGGTTA 60.079 52.632 25.92 0.00 0.00 2.85
4113 5709 2.510064 AATCCGCGGCGAAGGTTACA 62.510 55.000 25.92 0.00 0.00 2.41
4122 5718 2.853731 CGAAGGTTACAGATCGCTCT 57.146 50.000 0.00 0.00 0.00 4.09
4123 5719 3.965292 CGAAGGTTACAGATCGCTCTA 57.035 47.619 0.00 0.00 0.00 2.43
4125 5721 3.304123 CGAAGGTTACAGATCGCTCTAGG 60.304 52.174 0.00 0.00 0.00 3.02
4130 5726 0.749649 ACAGATCGCTCTAGGGCTTG 59.250 55.000 13.91 8.23 0.00 4.01
4169 5765 1.074951 GAGGTGGGTTGAGTTGGGG 59.925 63.158 0.00 0.00 0.00 4.96
4170 5766 1.386772 AGGTGGGTTGAGTTGGGGA 60.387 57.895 0.00 0.00 0.00 4.81
4171 5767 0.996762 AGGTGGGTTGAGTTGGGGAA 60.997 55.000 0.00 0.00 0.00 3.97
4172 5768 0.114364 GGTGGGTTGAGTTGGGGAAT 59.886 55.000 0.00 0.00 0.00 3.01
4173 5769 1.256812 GTGGGTTGAGTTGGGGAATG 58.743 55.000 0.00 0.00 0.00 2.67
4174 5770 1.153539 TGGGTTGAGTTGGGGAATGA 58.846 50.000 0.00 0.00 0.00 2.57
4175 5771 1.715931 TGGGTTGAGTTGGGGAATGAT 59.284 47.619 0.00 0.00 0.00 2.45
4177 5773 1.478105 GGTTGAGTTGGGGAATGATGC 59.522 52.381 0.00 0.00 0.00 3.91
4178 5774 2.170166 GTTGAGTTGGGGAATGATGCA 58.830 47.619 0.00 0.00 0.00 3.96
4179 5775 2.133281 TGAGTTGGGGAATGATGCAG 57.867 50.000 0.00 0.00 0.00 4.41
4180 5776 0.743097 GAGTTGGGGAATGATGCAGC 59.257 55.000 0.00 0.00 0.00 5.25
4185 5782 2.484062 GGGAATGATGCAGCCACGG 61.484 63.158 0.00 0.00 0.00 4.94
4196 5793 2.950673 GCCACGGCGACATTCAAA 59.049 55.556 16.62 0.00 0.00 2.69
4207 5804 1.737793 GACATTCAAACCGAATCCGCT 59.262 47.619 0.00 0.00 42.70 5.52
4209 5806 1.737236 CATTCAAACCGAATCCGCTGA 59.263 47.619 0.00 0.00 42.70 4.26
4230 5827 4.110493 GGTTTCTCGCCGATGAGG 57.890 61.111 0.00 0.00 44.97 3.86
4250 5847 2.815647 GAGGCGTTCCAAGAGCGG 60.816 66.667 3.10 0.00 36.81 5.52
4266 5863 1.382522 GCGGATGCTCAAGGAATTCA 58.617 50.000 7.93 0.00 38.39 2.57
4272 5869 1.347707 TGCTCAAGGAATTCACCGAGT 59.652 47.619 7.93 0.00 34.73 4.18
4274 5871 3.007506 TGCTCAAGGAATTCACCGAGTTA 59.992 43.478 7.93 1.21 34.73 2.24
4275 5872 3.371285 GCTCAAGGAATTCACCGAGTTAC 59.629 47.826 7.93 0.00 34.73 2.50
4286 5883 2.578369 CGAGTTACGGGCGAATCAG 58.422 57.895 0.00 0.00 38.46 2.90
4287 5884 0.099968 CGAGTTACGGGCGAATCAGA 59.900 55.000 0.00 0.00 38.46 3.27
4293 5890 1.448540 CGGGCGAATCAGAGCAAGT 60.449 57.895 0.00 0.00 34.54 3.16
4294 5891 0.179111 CGGGCGAATCAGAGCAAGTA 60.179 55.000 0.00 0.00 34.54 2.24
4295 5892 1.576356 GGGCGAATCAGAGCAAGTAG 58.424 55.000 0.00 0.00 34.54 2.57
4297 5894 0.933796 GCGAATCAGAGCAAGTAGGC 59.066 55.000 0.00 0.00 0.00 3.93
4298 5895 1.740380 GCGAATCAGAGCAAGTAGGCA 60.740 52.381 0.00 0.00 35.83 4.75
4300 5897 1.939255 GAATCAGAGCAAGTAGGCAGC 59.061 52.381 0.00 0.00 35.83 5.25
4301 5898 1.202330 ATCAGAGCAAGTAGGCAGCT 58.798 50.000 0.00 0.00 42.17 4.24
4304 5901 0.036577 AGAGCAAGTAGGCAGCTGTG 60.037 55.000 16.64 5.44 39.02 3.66
4309 5906 1.185618 AAGTAGGCAGCTGTGGACGA 61.186 55.000 16.64 0.00 0.00 4.20
4310 5907 1.446272 GTAGGCAGCTGTGGACGAC 60.446 63.158 16.64 6.48 0.00 4.34
4318 5915 1.212751 CTGTGGACGACATCTGCGA 59.787 57.895 0.00 0.00 32.74 5.10
4320 5917 1.241315 TGTGGACGACATCTGCGAGA 61.241 55.000 0.00 0.00 0.00 4.04
4376 5973 0.248743 CGACGCGCCTGGATAAAGTA 60.249 55.000 5.73 0.00 0.00 2.24
4382 5979 2.608090 GCGCCTGGATAAAGTACAAGTC 59.392 50.000 0.00 0.00 0.00 3.01
4392 5989 6.539103 GGATAAAGTACAAGTCAAGGTGGATC 59.461 42.308 0.00 0.00 0.00 3.36
4394 5991 4.810191 AGTACAAGTCAAGGTGGATCTC 57.190 45.455 0.00 0.00 0.00 2.75
4397 5994 3.242867 ACAAGTCAAGGTGGATCTCTCA 58.757 45.455 0.00 0.00 0.00 3.27
4406 6003 1.135915 GTGGATCTCTCATGCGACACT 59.864 52.381 0.00 0.00 0.00 3.55
4407 6004 1.406898 TGGATCTCTCATGCGACACTC 59.593 52.381 0.00 0.00 0.00 3.51
4411 6008 0.813821 CTCTCATGCGACACTCTGGA 59.186 55.000 0.00 0.00 0.00 3.86
4412 6009 0.813821 TCTCATGCGACACTCTGGAG 59.186 55.000 0.00 0.00 0.00 3.86
4418 6015 1.595993 GCGACACTCTGGAGCAGGTA 61.596 60.000 0.00 0.00 31.51 3.08
4421 6018 1.618837 GACACTCTGGAGCAGGTACAA 59.381 52.381 0.00 0.00 31.51 2.41
4424 6021 2.047061 ACTCTGGAGCAGGTACAACAA 58.953 47.619 0.00 0.00 31.51 2.83
4425 6022 2.037772 ACTCTGGAGCAGGTACAACAAG 59.962 50.000 0.00 0.00 31.51 3.16
4426 6023 1.347707 TCTGGAGCAGGTACAACAAGG 59.652 52.381 0.00 0.00 31.51 3.61
4427 6024 0.400213 TGGAGCAGGTACAACAAGGG 59.600 55.000 0.00 0.00 0.00 3.95
4428 6025 0.400594 GGAGCAGGTACAACAAGGGT 59.599 55.000 0.00 0.00 0.00 4.34
4429 6026 1.626825 GGAGCAGGTACAACAAGGGTA 59.373 52.381 0.00 0.00 0.00 3.69
4430 6027 2.039348 GGAGCAGGTACAACAAGGGTAA 59.961 50.000 0.00 0.00 0.00 2.85
4431 6028 3.072211 GAGCAGGTACAACAAGGGTAAC 58.928 50.000 0.00 0.00 0.00 2.50
4432 6029 2.709397 AGCAGGTACAACAAGGGTAACT 59.291 45.455 0.00 0.00 39.28 2.24
4433 6030 3.072211 GCAGGTACAACAAGGGTAACTC 58.928 50.000 0.00 0.00 36.66 3.01
4434 6031 3.671716 CAGGTACAACAAGGGTAACTCC 58.328 50.000 0.00 0.00 36.66 3.85
4435 6032 3.071892 CAGGTACAACAAGGGTAACTCCA 59.928 47.826 0.00 0.00 36.66 3.86
4436 6033 3.914435 AGGTACAACAAGGGTAACTCCAT 59.086 43.478 0.00 0.00 33.62 3.41
4437 6034 4.007659 GGTACAACAAGGGTAACTCCATG 58.992 47.826 0.00 0.00 38.11 3.66
4438 6035 3.876309 ACAACAAGGGTAACTCCATGT 57.124 42.857 0.00 0.00 38.73 3.21
4439 6036 3.486383 ACAACAAGGGTAACTCCATGTG 58.514 45.455 0.00 0.00 37.68 3.21
4440 6037 3.137544 ACAACAAGGGTAACTCCATGTGA 59.862 43.478 0.00 0.00 37.68 3.58
4441 6038 3.418684 ACAAGGGTAACTCCATGTGAC 57.581 47.619 0.00 0.00 36.75 3.67
4442 6039 2.979678 ACAAGGGTAACTCCATGTGACT 59.020 45.455 0.00 0.00 36.75 3.41
4443 6040 3.008049 ACAAGGGTAACTCCATGTGACTC 59.992 47.826 0.00 0.00 36.75 3.36
4444 6041 2.902608 AGGGTAACTCCATGTGACTCA 58.097 47.619 0.00 0.00 32.69 3.41
4445 6042 3.248024 AGGGTAACTCCATGTGACTCAA 58.752 45.455 0.00 0.00 32.69 3.02
4446 6043 3.261897 AGGGTAACTCCATGTGACTCAAG 59.738 47.826 0.00 0.00 32.69 3.02
4447 6044 3.600388 GGTAACTCCATGTGACTCAAGG 58.400 50.000 0.00 0.00 36.37 3.61
4448 6045 3.260884 GGTAACTCCATGTGACTCAAGGA 59.739 47.826 1.87 1.87 40.95 3.36
4451 6048 0.615331 TCCATGTGACTCAAGGAGGC 59.385 55.000 0.00 0.00 38.75 4.70
4452 6049 0.325933 CCATGTGACTCAAGGAGGCA 59.674 55.000 0.00 0.00 46.50 4.75
4457 6054 0.687354 TGACTCAAGGAGGCAAGTCC 59.313 55.000 0.00 0.00 45.60 3.85
4458 6055 0.687354 GACTCAAGGAGGCAAGTCCA 59.313 55.000 0.00 0.00 37.69 4.02
4459 6056 0.398318 ACTCAAGGAGGCAAGTCCAC 59.602 55.000 2.19 0.00 39.34 4.02
4460 6057 0.671781 CTCAAGGAGGCAAGTCCACG 60.672 60.000 2.19 0.00 39.34 4.94
4461 6058 1.672356 CAAGGAGGCAAGTCCACGG 60.672 63.158 2.19 0.00 39.34 4.94
4462 6059 2.895424 AAGGAGGCAAGTCCACGGG 61.895 63.158 2.19 0.00 39.34 5.28
4464 6061 4.021925 GAGGCAAGTCCACGGGCT 62.022 66.667 0.00 0.00 40.45 5.19
4465 6062 3.959991 GAGGCAAGTCCACGGGCTC 62.960 68.421 10.63 10.63 45.11 4.70
4468 6065 4.760047 CAAGTCCACGGGCTCGGG 62.760 72.222 12.42 5.85 41.39 5.14
4485 6082 3.487576 GGAGAGAGCTCTTCCTCGA 57.512 57.895 25.54 0.00 40.61 4.04
4486 6083 1.021968 GGAGAGAGCTCTTCCTCGAC 58.978 60.000 25.54 11.46 40.61 4.20
4487 6084 1.408266 GGAGAGAGCTCTTCCTCGACT 60.408 57.143 25.54 15.23 40.61 4.18
4488 6085 1.670811 GAGAGAGCTCTTCCTCGACTG 59.329 57.143 19.36 0.00 40.61 3.51
4489 6086 0.100503 GAGAGCTCTTCCTCGACTGC 59.899 60.000 19.36 0.00 36.95 4.40
4490 6087 0.610509 AGAGCTCTTCCTCGACTGCA 60.611 55.000 11.45 0.00 36.95 4.41
4491 6088 0.459489 GAGCTCTTCCTCGACTGCAT 59.541 55.000 6.43 0.00 0.00 3.96
4492 6089 0.459489 AGCTCTTCCTCGACTGCATC 59.541 55.000 0.00 0.00 0.00 3.91
4493 6090 0.459489 GCTCTTCCTCGACTGCATCT 59.541 55.000 0.00 0.00 0.00 2.90
4494 6091 1.802136 GCTCTTCCTCGACTGCATCTG 60.802 57.143 0.00 0.00 0.00 2.90
4495 6092 1.747924 CTCTTCCTCGACTGCATCTGA 59.252 52.381 0.00 0.00 0.00 3.27
4496 6093 1.747924 TCTTCCTCGACTGCATCTGAG 59.252 52.381 0.00 0.00 0.00 3.35
4497 6094 0.820226 TTCCTCGACTGCATCTGAGG 59.180 55.000 17.70 17.70 43.68 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 5.355350 CCATAGAACCTTCACATTCTTCCAC 59.645 44.000 0.00 0.00 36.56 4.02
51 52 5.500234 CCATAGAACCTTCACATTCTTCCA 58.500 41.667 0.00 0.00 36.56 3.53
93 94 1.548269 CTTCTCCTTGGTCTCGAGCTT 59.452 52.381 7.81 0.00 0.00 3.74
97 98 1.595993 CGCCTTCTCCTTGGTCTCGA 61.596 60.000 0.00 0.00 0.00 4.04
102 103 0.909610 TCCATCGCCTTCTCCTTGGT 60.910 55.000 0.00 0.00 0.00 3.67
131 132 2.670934 CGCTTCAGCTTGGCCAGT 60.671 61.111 5.11 0.00 39.32 4.00
304 319 0.466124 GATCTTCTCCACTTCCGGGG 59.534 60.000 0.00 0.00 0.00 5.73
316 331 2.163818 TGAAACAACGCGGATCTTCT 57.836 45.000 12.47 0.00 0.00 2.85
341 356 8.776680 TTGAAATTACGTCTAAAGCTTGAAAC 57.223 30.769 0.00 0.00 0.00 2.78
349 364 8.060090 ACGAACAACTTGAAATTACGTCTAAAG 58.940 33.333 0.00 0.00 0.00 1.85
360 375 6.262273 AGTTCATACCACGAACAACTTGAAAT 59.738 34.615 5.89 0.00 44.22 2.17
376 391 0.808755 CGGCCACCAAAGTTCATACC 59.191 55.000 2.24 0.00 0.00 2.73
379 394 1.068434 CAAACGGCCACCAAAGTTCAT 59.932 47.619 2.24 0.00 0.00 2.57
460 492 3.853831 ATCATGCAGCGTCAATCAAAA 57.146 38.095 0.00 0.00 0.00 2.44
467 499 4.692228 TCATACTAAATCATGCAGCGTCA 58.308 39.130 0.00 0.00 0.00 4.35
472 504 9.334947 CCCCTATATTCATACTAAATCATGCAG 57.665 37.037 0.00 0.00 0.00 4.41
520 552 1.135083 ACTCAAATAGCCTCGTCCACG 60.135 52.381 0.00 0.00 41.45 4.94
540 572 1.745232 CGGGCAATAACAAGGCACTA 58.255 50.000 0.00 0.00 38.49 2.74
548 580 2.816083 CGTCCGCGGGCAATAACA 60.816 61.111 31.65 1.84 0.00 2.41
566 598 2.203379 TCCTGACGTGTCCGGACA 60.203 61.111 33.23 33.23 37.94 4.02
574 606 1.068474 CTTAAACGCCTCCTGACGTG 58.932 55.000 0.00 0.00 42.68 4.49
575 607 0.963962 TCTTAAACGCCTCCTGACGT 59.036 50.000 0.00 0.00 46.07 4.34
577 609 1.275573 ACCTCTTAAACGCCTCCTGAC 59.724 52.381 0.00 0.00 0.00 3.51
580 612 1.640917 TGACCTCTTAAACGCCTCCT 58.359 50.000 0.00 0.00 0.00 3.69
582 614 5.585047 ACAAATATGACCTCTTAAACGCCTC 59.415 40.000 0.00 0.00 0.00 4.70
583 615 5.497474 ACAAATATGACCTCTTAAACGCCT 58.503 37.500 0.00 0.00 0.00 5.52
617 649 5.760253 AGGATTGGATGTTAAAGCATCTACG 59.240 40.000 6.74 0.00 43.41 3.51
627 659 2.445525 GGGGGCTAGGATTGGATGTTAA 59.554 50.000 0.00 0.00 0.00 2.01
631 663 1.152649 AAGGGGGCTAGGATTGGATG 58.847 55.000 0.00 0.00 0.00 3.51
643 675 1.149401 GCAGTCCTATCAAGGGGGC 59.851 63.158 0.00 0.00 43.84 5.80
647 679 3.520290 TTACGTGCAGTCCTATCAAGG 57.480 47.619 0.00 0.00 45.21 3.61
649 681 3.259064 GCTTTACGTGCAGTCCTATCAA 58.741 45.455 0.00 0.00 0.00 2.57
650 682 2.232696 TGCTTTACGTGCAGTCCTATCA 59.767 45.455 0.00 0.00 35.31 2.15
652 684 2.233922 AGTGCTTTACGTGCAGTCCTAT 59.766 45.455 0.00 0.00 39.61 2.57
663 695 6.582295 AGCAATCACAATTTAAGTGCTTTACG 59.418 34.615 0.00 0.00 36.93 3.18
680 712 1.466360 GCGTGTGGAATGAGCAATCAC 60.466 52.381 0.00 0.00 0.00 3.06
685 717 3.422303 GCGCGTGTGGAATGAGCA 61.422 61.111 8.43 0.00 40.10 4.26
761 800 0.107268 ACCGTACAGGCGAAAAAGGT 59.893 50.000 4.00 0.00 46.52 3.50
854 893 6.010850 TGCACAAAACTAAATATACACCCCA 58.989 36.000 0.00 0.00 0.00 4.96
928 978 0.239879 TCTTTGCCGGATGTTTTCGC 59.760 50.000 5.05 0.00 0.00 4.70
931 981 1.000843 GCCTTCTTTGCCGGATGTTTT 59.999 47.619 5.05 0.00 0.00 2.43
1071 1121 1.525077 CTCGTCGGAGGAGGAGGAG 60.525 68.421 17.69 0.00 46.45 3.69
1657 1714 7.020827 ACAAGAAATCTCCAGTCCAGAATAA 57.979 36.000 0.00 0.00 0.00 1.40
1667 1724 3.269178 GGAGCTGACAAGAAATCTCCAG 58.731 50.000 0.00 0.00 39.75 3.86
1668 1725 2.026822 GGGAGCTGACAAGAAATCTCCA 60.027 50.000 0.00 0.00 41.28 3.86
1669 1726 2.026822 TGGGAGCTGACAAGAAATCTCC 60.027 50.000 0.00 0.00 39.38 3.71
1670 1727 3.055530 TCTGGGAGCTGACAAGAAATCTC 60.056 47.826 0.00 0.00 0.00 2.75
1673 1730 3.795688 TTCTGGGAGCTGACAAGAAAT 57.204 42.857 0.00 0.00 0.00 2.17
1675 1732 3.328931 AGATTTCTGGGAGCTGACAAGAA 59.671 43.478 0.00 0.00 0.00 2.52
1676 1733 2.909006 AGATTTCTGGGAGCTGACAAGA 59.091 45.455 0.00 0.00 0.00 3.02
1677 1734 3.008330 CAGATTTCTGGGAGCTGACAAG 58.992 50.000 0.00 0.00 40.20 3.16
1707 1779 4.705023 ACGGTTTCATCCTAAAGATTTGGG 59.295 41.667 1.48 1.48 39.87 4.12
1725 1797 1.107114 TTTGCAACACATGGACGGTT 58.893 45.000 0.00 0.00 0.00 4.44
1871 1945 1.452110 TGAATGATGCACCGGTCAAG 58.548 50.000 2.59 0.00 0.00 3.02
1873 1947 1.902938 TTTGAATGATGCACCGGTCA 58.097 45.000 2.59 6.66 0.00 4.02
1874 1948 2.228822 AGTTTTGAATGATGCACCGGTC 59.771 45.455 2.59 0.00 0.00 4.79
1896 1970 9.639601 CATCTCTACAAATGTGTACTGACTAAA 57.360 33.333 0.00 0.00 39.30 1.85
1907 1981 6.558771 TGTTGTTCCATCTCTACAAATGTG 57.441 37.500 0.00 0.00 33.96 3.21
1908 1982 7.765695 AATGTTGTTCCATCTCTACAAATGT 57.234 32.000 0.00 0.00 33.96 2.71
1915 1989 9.330063 GATGTGATAAATGTTGTTCCATCTCTA 57.670 33.333 0.00 0.00 0.00 2.43
1994 2076 7.453393 TGATATCTCCATAGGGAAATGTTCAC 58.547 38.462 3.98 0.00 44.38 3.18
2005 2087 9.565090 TTTTCACATTTCTGATATCTCCATAGG 57.435 33.333 3.98 0.00 0.00 2.57
2071 2155 5.454877 GTCGTTACTCCTATGCTAGTTTTCG 59.545 44.000 0.00 0.00 0.00 3.46
2085 2169 6.018180 ACAAACTTCATTTCTGTCGTTACTCC 60.018 38.462 0.00 0.00 0.00 3.85
2124 2345 3.033909 TGCAGTAGCTCTGGTGATGTAT 58.966 45.455 12.98 0.00 43.78 2.29
2125 2346 2.166459 GTGCAGTAGCTCTGGTGATGTA 59.834 50.000 12.98 0.00 43.78 2.29
2126 2347 1.066573 GTGCAGTAGCTCTGGTGATGT 60.067 52.381 12.98 0.00 43.78 3.06
2130 2351 0.035317 TTGGTGCAGTAGCTCTGGTG 59.965 55.000 12.98 0.00 43.78 4.17
2134 2355 2.867109 AATGTTGGTGCAGTAGCTCT 57.133 45.000 0.00 0.00 42.74 4.09
2146 2367 3.816523 AGCAAGCAATTTGGAAATGTTGG 59.183 39.130 0.00 0.00 37.26 3.77
2147 2368 5.427036 AAGCAAGCAATTTGGAAATGTTG 57.573 34.783 0.00 0.00 37.26 3.33
2148 2369 6.054295 TGTAAGCAAGCAATTTGGAAATGTT 58.946 32.000 0.00 0.00 37.26 2.71
2155 2383 3.680937 CACCATGTAAGCAAGCAATTTGG 59.319 43.478 0.00 0.00 37.26 3.28
2215 3112 2.299297 AGGTAAGTCGAGTGGAACCTTG 59.701 50.000 13.72 0.00 37.80 3.61
2276 3423 3.826236 TTTCTCACTCCGTAGTTCTCG 57.174 47.619 0.00 0.00 31.97 4.04
2294 3441 4.774200 ACTGCAAATAGAGCCTCCAATTTT 59.226 37.500 1.04 0.00 0.00 1.82
2435 3591 8.533657 TGAAGCAGAATAATGTGGATCAAATTT 58.466 29.630 0.00 0.00 0.00 1.82
2436 3592 8.070034 TGAAGCAGAATAATGTGGATCAAATT 57.930 30.769 0.00 0.00 0.00 1.82
2462 3618 6.538381 TGCATAGAGATTATTTTTGCGTCAGA 59.462 34.615 0.00 0.00 0.00 3.27
2484 3640 4.079253 GGAACCAGAAGACCTATTTTGCA 58.921 43.478 0.00 0.00 0.00 4.08
2594 3750 4.994852 TGGTCTACTTTTCTTGATTGGACG 59.005 41.667 0.00 0.00 0.00 4.79
2726 3882 0.039888 CGGTGCCGTAAAACCCTTTG 60.040 55.000 1.93 0.00 32.44 2.77
2861 4017 0.037590 TTCCGGTAATGGTGCTGCTT 59.962 50.000 0.00 0.00 0.00 3.91
3178 4557 7.028361 GCTAAGTACAACACTACTAGGACTTG 58.972 42.308 0.00 0.00 36.04 3.16
3180 4559 6.374894 CAGCTAAGTACAACACTACTAGGACT 59.625 42.308 0.00 0.00 36.04 3.85
3183 4562 6.512342 ACAGCTAAGTACAACACTACTAGG 57.488 41.667 0.00 0.00 36.04 3.02
3189 4568 6.113411 ACTGAAAACAGCTAAGTACAACACT 58.887 36.000 0.00 0.00 40.05 3.55
3195 4574 6.204108 TGGCTAAACTGAAAACAGCTAAGTAC 59.796 38.462 0.00 0.00 32.78 2.73
3198 4577 5.689383 TGGCTAAACTGAAAACAGCTAAG 57.311 39.130 0.00 0.00 32.78 2.18
3242 4697 4.299586 TGCCAAGGTCAGTTCATAATCA 57.700 40.909 0.00 0.00 0.00 2.57
3247 4702 1.180029 GCATGCCAAGGTCAGTTCAT 58.820 50.000 6.36 0.00 0.00 2.57
3499 5088 7.418712 GGCTATACTATACACACCCTGTTCTTT 60.419 40.741 0.00 0.00 33.91 2.52
3565 5154 2.288702 CGAGCACCAGGAATCCTCTATG 60.289 54.545 0.00 0.00 0.00 2.23
3584 5176 6.203808 ACTGACTATACATACTTGCAACGA 57.796 37.500 0.00 0.00 0.00 3.85
3586 5178 9.961265 TGTATACTGACTATACATACTTGCAAC 57.039 33.333 4.17 0.00 41.54 4.17
3639 5231 9.601217 AGTCCTTACAAATCTACAATGTGATAC 57.399 33.333 0.00 0.00 0.00 2.24
3656 5248 1.374631 CAGCGCTGCAGTCCTTACA 60.375 57.895 26.68 0.00 0.00 2.41
3657 5249 2.103042 CCAGCGCTGCAGTCCTTAC 61.103 63.158 31.96 0.00 0.00 2.34
3658 5250 2.265739 CCAGCGCTGCAGTCCTTA 59.734 61.111 31.96 0.00 0.00 2.69
3682 5274 1.153349 CTTTCCTCCCTGGCTACGC 60.153 63.158 0.00 0.00 35.26 4.42
3683 5275 1.522569 CCTTTCCTCCCTGGCTACG 59.477 63.158 0.00 0.00 35.26 3.51
3684 5276 1.224870 GCCTTTCCTCCCTGGCTAC 59.775 63.158 0.00 0.00 41.92 3.58
3685 5277 2.367202 CGCCTTTCCTCCCTGGCTA 61.367 63.158 0.00 0.00 42.90 3.93
3686 5278 3.721706 CGCCTTTCCTCCCTGGCT 61.722 66.667 0.00 0.00 42.90 4.75
3687 5279 2.193087 TTACGCCTTTCCTCCCTGGC 62.193 60.000 0.00 0.00 41.76 4.85
3688 5280 0.326927 TTTACGCCTTTCCTCCCTGG 59.673 55.000 0.00 0.00 37.10 4.45
3689 5281 1.739067 CTTTACGCCTTTCCTCCCTG 58.261 55.000 0.00 0.00 0.00 4.45
3690 5282 0.035343 GCTTTACGCCTTTCCTCCCT 60.035 55.000 0.00 0.00 0.00 4.20
3691 5283 0.322187 TGCTTTACGCCTTTCCTCCC 60.322 55.000 0.00 0.00 38.05 4.30
3692 5284 1.087501 CTGCTTTACGCCTTTCCTCC 58.912 55.000 0.00 0.00 38.05 4.30
3693 5285 1.087501 CCTGCTTTACGCCTTTCCTC 58.912 55.000 0.00 0.00 38.05 3.71
3694 5286 0.322546 CCCTGCTTTACGCCTTTCCT 60.323 55.000 0.00 0.00 38.05 3.36
3695 5287 1.313091 CCCCTGCTTTACGCCTTTCC 61.313 60.000 0.00 0.00 38.05 3.13
3696 5288 0.322187 TCCCCTGCTTTACGCCTTTC 60.322 55.000 0.00 0.00 38.05 2.62
3697 5289 0.322546 CTCCCCTGCTTTACGCCTTT 60.323 55.000 0.00 0.00 38.05 3.11
3698 5290 1.299976 CTCCCCTGCTTTACGCCTT 59.700 57.895 0.00 0.00 38.05 4.35
3699 5291 2.670148 CCTCCCCTGCTTTACGCCT 61.670 63.158 0.00 0.00 38.05 5.52
3700 5292 2.124695 CCTCCCCTGCTTTACGCC 60.125 66.667 0.00 0.00 38.05 5.68
3701 5293 1.153349 CTCCTCCCCTGCTTTACGC 60.153 63.158 0.00 0.00 39.77 4.42
3709 5301 2.586792 CCGCTTTCTCCTCCCCTG 59.413 66.667 0.00 0.00 0.00 4.45
3713 5305 1.746991 CCTTGCCGCTTTCTCCTCC 60.747 63.158 0.00 0.00 0.00 4.30
3715 5307 1.194781 TCTCCTTGCCGCTTTCTCCT 61.195 55.000 0.00 0.00 0.00 3.69
3717 5309 1.355066 CGTCTCCTTGCCGCTTTCTC 61.355 60.000 0.00 0.00 0.00 2.87
3726 5318 1.803519 CACTCTCGCGTCTCCTTGC 60.804 63.158 5.77 0.00 0.00 4.01
3727 5319 0.039074 AACACTCTCGCGTCTCCTTG 60.039 55.000 5.77 0.00 0.00 3.61
3731 5323 1.767289 TTCAAACACTCTCGCGTCTC 58.233 50.000 5.77 0.00 0.00 3.36
3734 5326 1.455786 CGAATTCAAACACTCTCGCGT 59.544 47.619 5.77 0.00 0.00 6.01
3739 5331 2.372172 ACCCCTCGAATTCAAACACTCT 59.628 45.455 6.22 0.00 0.00 3.24
3754 5346 4.083862 GCCCACTCGACACCCCTC 62.084 72.222 0.00 0.00 0.00 4.30
3757 5349 1.823169 TTACAGCCCACTCGACACCC 61.823 60.000 0.00 0.00 0.00 4.61
3759 5351 1.014564 GCTTACAGCCCACTCGACAC 61.015 60.000 0.00 0.00 34.48 3.67
3760 5352 1.292223 GCTTACAGCCCACTCGACA 59.708 57.895 0.00 0.00 34.48 4.35
3761 5353 4.187056 GCTTACAGCCCACTCGAC 57.813 61.111 0.00 0.00 34.48 4.20
3772 5364 2.809119 CAACACCATTACACGGCTTACA 59.191 45.455 0.00 0.00 0.00 2.41
3775 5367 1.243902 CCAACACCATTACACGGCTT 58.756 50.000 0.00 0.00 0.00 4.35
3780 5372 0.891904 ACGGCCCAACACCATTACAC 60.892 55.000 0.00 0.00 0.00 2.90
3805 5397 1.342174 GGGTCCGACTCACACTTACAA 59.658 52.381 0.00 0.00 0.00 2.41
3807 5399 0.109412 CGGGTCCGACTCACACTTAC 60.109 60.000 2.83 0.00 42.83 2.34
3809 5401 1.397390 AACGGGTCCGACTCACACTT 61.397 55.000 16.90 0.00 42.83 3.16
3813 5405 3.722728 ATATAAACGGGTCCGACTCAC 57.277 47.619 16.90 0.00 42.83 3.51
3814 5406 4.261741 GCTTATATAAACGGGTCCGACTCA 60.262 45.833 16.90 0.00 42.83 3.41
3816 5408 3.304928 CGCTTATATAAACGGGTCCGACT 60.305 47.826 16.90 4.96 42.83 4.18
3819 5411 3.240069 CTCGCTTATATAAACGGGTCCG 58.760 50.000 16.06 7.97 46.03 4.79
3821 5413 3.910767 CGACTCGCTTATATAAACGGGTC 59.089 47.826 29.10 29.10 46.22 4.46
3824 5416 4.151258 TCCGACTCGCTTATATAAACGG 57.849 45.455 16.06 13.24 39.30 4.44
3826 5418 5.911615 CGATCCGACTCGCTTATATAAAC 57.088 43.478 0.00 0.00 0.00 2.01
3838 5432 0.952280 TATCCACAGCGATCCGACTC 59.048 55.000 0.00 0.00 0.00 3.36
3841 5435 1.806461 GCCTATCCACAGCGATCCGA 61.806 60.000 0.00 0.00 0.00 4.55
3844 5438 1.001293 TGATGCCTATCCACAGCGATC 59.999 52.381 0.00 0.00 32.09 3.69
3845 5439 1.051008 TGATGCCTATCCACAGCGAT 58.949 50.000 0.00 0.00 32.09 4.58
3848 5442 0.940126 CGTTGATGCCTATCCACAGC 59.060 55.000 0.00 0.00 30.45 4.40
3864 5458 7.879677 TGGCTCATAATGATCTATTTCATCGTT 59.120 33.333 0.00 0.00 35.29 3.85
3866 5460 7.332678 TGTGGCTCATAATGATCTATTTCATCG 59.667 37.037 0.00 0.00 35.29 3.84
3875 5471 3.137446 GCCTGTGGCTCATAATGATCT 57.863 47.619 0.73 0.00 46.69 2.75
3900 5496 4.803452 AGAAGATAGTGAGAGGAGGAAGG 58.197 47.826 0.00 0.00 0.00 3.46
3913 5509 7.179269 AGAGACAACAACTAGGAGAAGATAGT 58.821 38.462 0.00 0.00 33.67 2.12
3916 5512 5.420739 GGAGAGACAACAACTAGGAGAAGAT 59.579 44.000 0.00 0.00 0.00 2.40
3917 5513 4.767928 GGAGAGACAACAACTAGGAGAAGA 59.232 45.833 0.00 0.00 0.00 2.87
3928 5524 3.181422 TGGTAGAGAGGGAGAGACAACAA 60.181 47.826 0.00 0.00 0.00 2.83
3930 5526 3.088789 TGGTAGAGAGGGAGAGACAAC 57.911 52.381 0.00 0.00 0.00 3.32
3931 5527 3.827817 TTGGTAGAGAGGGAGAGACAA 57.172 47.619 0.00 0.00 0.00 3.18
3933 5529 4.712337 TGAATTTGGTAGAGAGGGAGAGAC 59.288 45.833 0.00 0.00 0.00 3.36
3934 5530 4.947883 TGAATTTGGTAGAGAGGGAGAGA 58.052 43.478 0.00 0.00 0.00 3.10
3936 5532 6.445139 AGATTTGAATTTGGTAGAGAGGGAGA 59.555 38.462 0.00 0.00 0.00 3.71
3937 5533 6.541641 CAGATTTGAATTTGGTAGAGAGGGAG 59.458 42.308 0.00 0.00 0.00 4.30
3938 5534 6.418101 CAGATTTGAATTTGGTAGAGAGGGA 58.582 40.000 0.00 0.00 0.00 4.20
3939 5535 5.067023 GCAGATTTGAATTTGGTAGAGAGGG 59.933 44.000 0.00 0.00 0.00 4.30
3941 5537 6.998968 AGCAGATTTGAATTTGGTAGAGAG 57.001 37.500 0.00 0.00 30.64 3.20
3942 5538 6.823689 GGTAGCAGATTTGAATTTGGTAGAGA 59.176 38.462 6.45 0.00 35.18 3.10
3943 5539 6.825721 AGGTAGCAGATTTGAATTTGGTAGAG 59.174 38.462 6.45 0.00 35.18 2.43
3944 5540 6.721318 AGGTAGCAGATTTGAATTTGGTAGA 58.279 36.000 6.45 0.00 35.18 2.59
3945 5541 6.825721 AGAGGTAGCAGATTTGAATTTGGTAG 59.174 38.462 6.45 0.00 35.18 3.18
3946 5542 6.721318 AGAGGTAGCAGATTTGAATTTGGTA 58.279 36.000 0.00 3.04 33.88 3.25
3947 5543 5.574188 AGAGGTAGCAGATTTGAATTTGGT 58.426 37.500 4.68 4.68 35.70 3.67
3949 5545 6.748333 TGAGAGGTAGCAGATTTGAATTTG 57.252 37.500 0.00 0.00 0.00 2.32
3950 5546 6.545298 GGATGAGAGGTAGCAGATTTGAATTT 59.455 38.462 0.00 0.00 0.00 1.82
3951 5547 6.060788 GGATGAGAGGTAGCAGATTTGAATT 58.939 40.000 0.00 0.00 0.00 2.17
3952 5548 5.455899 GGGATGAGAGGTAGCAGATTTGAAT 60.456 44.000 0.00 0.00 0.00 2.57
3953 5549 4.141620 GGGATGAGAGGTAGCAGATTTGAA 60.142 45.833 0.00 0.00 0.00 2.69
3954 5550 3.389329 GGGATGAGAGGTAGCAGATTTGA 59.611 47.826 0.00 0.00 0.00 2.69
3955 5551 3.737850 GGGATGAGAGGTAGCAGATTTG 58.262 50.000 0.00 0.00 0.00 2.32
3956 5552 2.366916 CGGGATGAGAGGTAGCAGATTT 59.633 50.000 0.00 0.00 0.00 2.17
3957 5553 1.967066 CGGGATGAGAGGTAGCAGATT 59.033 52.381 0.00 0.00 0.00 2.40
3958 5554 1.626686 CGGGATGAGAGGTAGCAGAT 58.373 55.000 0.00 0.00 0.00 2.90
3959 5555 1.109920 GCGGGATGAGAGGTAGCAGA 61.110 60.000 0.00 0.00 0.00 4.26
3963 5559 1.202952 AGGTAGCGGGATGAGAGGTAG 60.203 57.143 0.00 0.00 0.00 3.18
3964 5560 0.851469 AGGTAGCGGGATGAGAGGTA 59.149 55.000 0.00 0.00 0.00 3.08
3966 5562 0.390860 CAAGGTAGCGGGATGAGAGG 59.609 60.000 0.00 0.00 0.00 3.69
3971 5567 1.227263 CCGACAAGGTAGCGGGATG 60.227 63.158 0.00 0.00 41.29 3.51
3972 5568 3.090219 GCCGACAAGGTAGCGGGAT 62.090 63.158 0.00 0.00 44.92 3.85
3977 5573 2.807631 TTCGTCGCCGACAAGGTAGC 62.808 60.000 18.40 0.00 44.13 3.58
3980 5576 2.355481 GTTCGTCGCCGACAAGGT 60.355 61.111 18.40 0.00 44.13 3.50
3984 5580 2.355363 CAAGGTTCGTCGCCGACA 60.355 61.111 18.40 1.54 44.13 4.35
3992 5588 4.324991 GGGTCGGCCAAGGTTCGT 62.325 66.667 9.07 0.00 36.17 3.85
3998 5594 1.078426 CAACCTAGGGTCGGCCAAG 60.078 63.158 14.81 4.22 33.12 3.61
3999 5595 1.844289 ACAACCTAGGGTCGGCCAA 60.844 57.895 14.81 0.00 33.12 4.52
4000 5596 2.203877 ACAACCTAGGGTCGGCCA 60.204 61.111 14.81 0.00 33.12 5.36
4001 5597 2.267961 CACAACCTAGGGTCGGCC 59.732 66.667 14.81 0.00 33.12 6.13
4002 5598 1.079336 GTCACAACCTAGGGTCGGC 60.079 63.158 14.81 0.00 33.12 5.54
4006 5602 4.426704 ACTAGATTGTCACAACCTAGGGT 58.573 43.478 21.21 2.44 37.65 4.34
4007 5603 6.323996 TGATACTAGATTGTCACAACCTAGGG 59.676 42.308 21.21 0.60 33.13 3.53
4012 5608 5.751028 GCTCTGATACTAGATTGTCACAACC 59.249 44.000 0.00 0.00 0.00 3.77
4015 5611 5.204292 AGGCTCTGATACTAGATTGTCACA 58.796 41.667 0.00 0.00 0.00 3.58
4048 5644 3.192954 TTTTTGGTGGCTGCGCGAG 62.193 57.895 12.10 5.65 0.00 5.03
4049 5645 3.212682 TTTTTGGTGGCTGCGCGA 61.213 55.556 12.10 0.00 0.00 5.87
4065 5661 5.046878 GGGTACGAAATTGGGGAGAATTTTT 60.047 40.000 0.00 0.00 36.00 1.94
4066 5662 4.464951 GGGTACGAAATTGGGGAGAATTTT 59.535 41.667 0.00 0.00 36.00 1.82
4067 5663 4.021229 GGGTACGAAATTGGGGAGAATTT 58.979 43.478 0.00 0.00 38.07 1.82
4068 5664 3.010808 TGGGTACGAAATTGGGGAGAATT 59.989 43.478 0.00 0.00 0.00 2.17
4069 5665 2.578940 TGGGTACGAAATTGGGGAGAAT 59.421 45.455 0.00 0.00 0.00 2.40
4073 5669 0.034863 GCTGGGTACGAAATTGGGGA 60.035 55.000 0.00 0.00 0.00 4.81
4074 5670 0.322997 TGCTGGGTACGAAATTGGGG 60.323 55.000 0.00 0.00 0.00 4.96
4075 5671 1.540267 TTGCTGGGTACGAAATTGGG 58.460 50.000 0.00 0.00 0.00 4.12
4076 5672 3.428862 GGATTTGCTGGGTACGAAATTGG 60.429 47.826 0.00 0.00 0.00 3.16
4077 5673 3.730662 CGGATTTGCTGGGTACGAAATTG 60.731 47.826 0.00 0.00 0.00 2.32
4078 5674 2.422127 CGGATTTGCTGGGTACGAAATT 59.578 45.455 0.00 0.00 0.00 1.82
4079 5675 2.014128 CGGATTTGCTGGGTACGAAAT 58.986 47.619 0.00 0.00 0.00 2.17
4080 5676 1.444836 CGGATTTGCTGGGTACGAAA 58.555 50.000 0.00 0.00 0.00 3.46
4081 5677 1.022451 GCGGATTTGCTGGGTACGAA 61.022 55.000 0.00 0.00 0.00 3.85
4084 5680 2.469516 CCGCGGATTTGCTGGGTAC 61.470 63.158 24.07 0.00 34.18 3.34
4090 5686 3.499737 CTTCGCCGCGGATTTGCT 61.500 61.111 33.48 0.00 0.00 3.91
4091 5687 4.536687 CCTTCGCCGCGGATTTGC 62.537 66.667 33.48 12.43 0.00 3.68
4100 5696 2.578369 CGATCTGTAACCTTCGCCG 58.422 57.895 0.00 0.00 0.00 6.46
4106 5702 2.588620 CCCTAGAGCGATCTGTAACCT 58.411 52.381 14.67 0.00 0.00 3.50
4110 5706 1.957177 CAAGCCCTAGAGCGATCTGTA 59.043 52.381 14.67 0.00 38.01 2.74
4111 5707 0.749649 CAAGCCCTAGAGCGATCTGT 59.250 55.000 14.67 0.00 38.01 3.41
4113 5709 1.892474 GATCAAGCCCTAGAGCGATCT 59.108 52.381 8.83 8.83 38.01 2.75
4120 5716 5.163301 GGATTTACACAGATCAAGCCCTAGA 60.163 44.000 0.00 0.00 0.00 2.43
4121 5717 5.059833 GGATTTACACAGATCAAGCCCTAG 58.940 45.833 0.00 0.00 0.00 3.02
4122 5718 4.473196 TGGATTTACACAGATCAAGCCCTA 59.527 41.667 0.00 0.00 0.00 3.53
4123 5719 3.266772 TGGATTTACACAGATCAAGCCCT 59.733 43.478 0.00 0.00 0.00 5.19
4125 5721 4.333926 GTCTGGATTTACACAGATCAAGCC 59.666 45.833 0.00 0.00 44.65 4.35
4130 5726 3.132289 TCGGGTCTGGATTTACACAGATC 59.868 47.826 0.00 0.00 44.65 2.75
4163 5759 0.971959 TGGCTGCATCATTCCCCAAC 60.972 55.000 0.50 0.00 0.00 3.77
4169 5765 2.410469 GCCGTGGCTGCATCATTC 59.590 61.111 2.98 0.00 38.26 2.67
4170 5766 3.511595 CGCCGTGGCTGCATCATT 61.512 61.111 9.55 0.00 39.32 2.57
4171 5767 4.471908 TCGCCGTGGCTGCATCAT 62.472 61.111 9.55 0.00 39.32 2.45
4174 5770 4.783621 ATGTCGCCGTGGCTGCAT 62.784 61.111 9.55 9.85 39.32 3.96
4177 5773 1.851021 TTTGAATGTCGCCGTGGCTG 61.851 55.000 9.55 2.94 39.32 4.85
4178 5774 1.599518 TTTGAATGTCGCCGTGGCT 60.600 52.632 9.55 0.00 39.32 4.75
4179 5775 1.442017 GTTTGAATGTCGCCGTGGC 60.442 57.895 0.00 0.00 37.85 5.01
4180 5776 1.209127 GGTTTGAATGTCGCCGTGG 59.791 57.895 0.00 0.00 0.00 4.94
4214 5811 1.084370 CCACCTCATCGGCGAGAAAC 61.084 60.000 17.22 0.00 34.79 2.78
4217 5814 2.044352 TCCACCTCATCGGCGAGA 60.044 61.111 17.22 11.93 34.79 4.04
4218 5815 2.415010 CTCCACCTCATCGGCGAG 59.585 66.667 17.22 7.89 35.61 5.03
4223 5820 1.519455 GAACGCCTCCACCTCATCG 60.519 63.158 0.00 0.00 0.00 3.84
4250 5847 2.611292 CTCGGTGAATTCCTTGAGCATC 59.389 50.000 2.27 0.00 0.00 3.91
4256 5853 3.991605 CGTAACTCGGTGAATTCCTTG 57.008 47.619 2.27 0.00 35.71 3.61
4272 5869 0.248012 TTGCTCTGATTCGCCCGTAA 59.752 50.000 0.00 0.00 0.00 3.18
4274 5871 1.448540 CTTGCTCTGATTCGCCCGT 60.449 57.895 0.00 0.00 0.00 5.28
4275 5872 0.179111 TACTTGCTCTGATTCGCCCG 60.179 55.000 0.00 0.00 0.00 6.13
4281 5878 1.558756 AGCTGCCTACTTGCTCTGATT 59.441 47.619 0.00 0.00 30.41 2.57
4282 5879 1.134461 CAGCTGCCTACTTGCTCTGAT 60.134 52.381 0.00 0.00 35.82 2.90
4283 5880 0.248565 CAGCTGCCTACTTGCTCTGA 59.751 55.000 0.00 0.00 35.82 3.27
4286 5883 1.023513 CCACAGCTGCCTACTTGCTC 61.024 60.000 15.27 0.00 34.51 4.26
4287 5884 1.002868 CCACAGCTGCCTACTTGCT 60.003 57.895 15.27 0.00 37.56 3.91
4293 5890 1.257750 ATGTCGTCCACAGCTGCCTA 61.258 55.000 15.27 0.00 38.85 3.93
4294 5891 2.513026 GATGTCGTCCACAGCTGCCT 62.513 60.000 15.27 0.00 38.47 4.75
4295 5892 2.046892 ATGTCGTCCACAGCTGCC 60.047 61.111 15.27 0.00 38.85 4.85
4300 5897 0.799917 CTCGCAGATGTCGTCCACAG 60.800 60.000 0.00 0.00 38.85 3.66
4301 5898 1.212751 CTCGCAGATGTCGTCCACA 59.787 57.895 0.00 0.00 40.18 4.17
4304 5901 1.142778 GCTTCTCGCAGATGTCGTCC 61.143 60.000 0.00 0.00 38.92 4.79
4309 5906 4.802424 CGAGCTTCTCGCAGATGT 57.198 55.556 3.19 0.00 46.75 3.06
4328 5925 1.153489 GAGCTTCGCATCCAGAGCA 60.153 57.895 0.00 0.00 0.00 4.26
4331 5928 0.179065 CCATGAGCTTCGCATCCAGA 60.179 55.000 0.00 0.00 0.00 3.86
4334 5931 2.614581 CTCCATGAGCTTCGCATCC 58.385 57.895 0.00 0.00 0.00 3.51
4346 5943 4.214383 CGCGTCGCTTGCTCCATG 62.214 66.667 16.36 0.00 0.00 3.66
4359 5956 0.533491 TGTACTTTATCCAGGCGCGT 59.467 50.000 8.43 0.00 0.00 6.01
4364 5961 5.643777 CACCTTGACTTGTACTTTATCCAGG 59.356 44.000 0.00 0.67 0.00 4.45
4367 5964 5.801380 TCCACCTTGACTTGTACTTTATCC 58.199 41.667 0.00 0.00 0.00 2.59
4370 5967 6.497259 AGAGATCCACCTTGACTTGTACTTTA 59.503 38.462 0.00 0.00 0.00 1.85
4371 5968 5.308237 AGAGATCCACCTTGACTTGTACTTT 59.692 40.000 0.00 0.00 0.00 2.66
4376 5973 3.242867 TGAGAGATCCACCTTGACTTGT 58.757 45.455 0.00 0.00 0.00 3.16
4382 5979 1.137675 TCGCATGAGAGATCCACCTTG 59.862 52.381 0.00 0.00 0.00 3.61
4392 5989 0.813821 TCCAGAGTGTCGCATGAGAG 59.186 55.000 0.00 0.00 0.00 3.20
4394 5991 0.805322 GCTCCAGAGTGTCGCATGAG 60.805 60.000 0.00 0.00 0.00 2.90
4397 5994 1.217511 CTGCTCCAGAGTGTCGCAT 59.782 57.895 0.00 0.00 32.44 4.73
4406 6003 1.347707 CCTTGTTGTACCTGCTCCAGA 59.652 52.381 0.00 0.00 32.44 3.86
4407 6004 1.611673 CCCTTGTTGTACCTGCTCCAG 60.612 57.143 0.00 0.00 0.00 3.86
4411 6008 2.709397 AGTTACCCTTGTTGTACCTGCT 59.291 45.455 0.00 0.00 0.00 4.24
4412 6009 3.072211 GAGTTACCCTTGTTGTACCTGC 58.928 50.000 0.00 0.00 0.00 4.85
4418 6015 3.137544 TCACATGGAGTTACCCTTGTTGT 59.862 43.478 0.00 0.00 41.06 3.32
4421 6018 2.979678 AGTCACATGGAGTTACCCTTGT 59.020 45.455 0.00 0.00 42.96 3.16
4424 6021 2.902608 TGAGTCACATGGAGTTACCCT 58.097 47.619 0.00 0.00 38.00 4.34
4425 6022 3.600388 CTTGAGTCACATGGAGTTACCC 58.400 50.000 0.00 0.00 38.00 3.69
4426 6023 3.260884 TCCTTGAGTCACATGGAGTTACC 59.739 47.826 0.00 0.00 44.38 2.85
4427 6024 4.537135 TCCTTGAGTCACATGGAGTTAC 57.463 45.455 0.00 0.00 44.38 2.50
4432 6029 0.615331 GCCTCCTTGAGTCACATGGA 59.385 55.000 0.00 0.30 46.15 3.41
4433 6030 0.325933 TGCCTCCTTGAGTCACATGG 59.674 55.000 0.00 0.00 42.81 3.66
4434 6031 2.082231 CTTGCCTCCTTGAGTCACATG 58.918 52.381 0.00 0.00 0.00 3.21
4435 6032 1.701847 ACTTGCCTCCTTGAGTCACAT 59.298 47.619 0.00 0.00 0.00 3.21
4436 6033 1.070758 GACTTGCCTCCTTGAGTCACA 59.929 52.381 0.00 0.00 38.64 3.58
4437 6034 1.609320 GGACTTGCCTCCTTGAGTCAC 60.609 57.143 0.00 0.00 40.13 3.67
4438 6035 0.687354 GGACTTGCCTCCTTGAGTCA 59.313 55.000 4.93 0.00 40.13 3.41
4439 6036 0.687354 TGGACTTGCCTCCTTGAGTC 59.313 55.000 0.00 0.00 38.19 3.36
4440 6037 0.398318 GTGGACTTGCCTCCTTGAGT 59.602 55.000 0.00 0.00 37.63 3.41
4441 6038 0.671781 CGTGGACTTGCCTCCTTGAG 60.672 60.000 0.00 0.00 37.63 3.02
4442 6039 1.371183 CGTGGACTTGCCTCCTTGA 59.629 57.895 0.00 0.00 37.63 3.02
4443 6040 1.672356 CCGTGGACTTGCCTCCTTG 60.672 63.158 0.00 0.00 37.63 3.61
4444 6041 2.750350 CCGTGGACTTGCCTCCTT 59.250 61.111 0.00 0.00 37.63 3.36
4445 6042 3.322466 CCCGTGGACTTGCCTCCT 61.322 66.667 0.00 0.00 37.63 3.69
4447 6044 3.959991 GAGCCCGTGGACTTGCCTC 62.960 68.421 0.00 0.00 37.63 4.70
4448 6045 4.021925 GAGCCCGTGGACTTGCCT 62.022 66.667 0.00 0.00 37.63 4.75
4451 6048 4.760047 CCCGAGCCCGTGGACTTG 62.760 72.222 0.00 0.00 0.00 3.16
4457 6054 3.522731 CTCTCTCCCGAGCCCGTG 61.523 72.222 0.00 0.00 37.19 4.94
4463 6060 0.106719 AGGAAGAGCTCTCTCCCGAG 60.107 60.000 27.49 0.00 39.39 4.63
4464 6061 0.106918 GAGGAAGAGCTCTCTCCCGA 60.107 60.000 27.49 0.00 39.39 5.14
4465 6062 1.444119 CGAGGAAGAGCTCTCTCCCG 61.444 65.000 27.49 25.42 39.39 5.14
4466 6063 0.106918 TCGAGGAAGAGCTCTCTCCC 60.107 60.000 27.49 22.86 39.39 4.30
4467 6064 1.021968 GTCGAGGAAGAGCTCTCTCC 58.978 60.000 25.50 25.50 39.39 3.71
4468 6065 1.670811 CAGTCGAGGAAGAGCTCTCTC 59.329 57.143 18.55 18.39 39.39 3.20
4469 6066 1.750193 CAGTCGAGGAAGAGCTCTCT 58.250 55.000 18.55 10.99 42.75 3.10
4470 6067 0.100503 GCAGTCGAGGAAGAGCTCTC 59.899 60.000 18.55 10.50 0.00 3.20
4471 6068 0.610509 TGCAGTCGAGGAAGAGCTCT 60.611 55.000 11.45 11.45 0.00 4.09
4472 6069 0.459489 ATGCAGTCGAGGAAGAGCTC 59.541 55.000 5.27 5.27 0.00 4.09
4473 6070 0.459489 GATGCAGTCGAGGAAGAGCT 59.541 55.000 0.00 0.00 0.00 4.09
4474 6071 0.459489 AGATGCAGTCGAGGAAGAGC 59.541 55.000 0.00 0.00 0.00 4.09
4475 6072 1.747924 TCAGATGCAGTCGAGGAAGAG 59.252 52.381 0.00 0.00 0.00 2.85
4476 6073 1.747924 CTCAGATGCAGTCGAGGAAGA 59.252 52.381 0.00 0.00 0.00 2.87
4477 6074 1.202394 CCTCAGATGCAGTCGAGGAAG 60.202 57.143 18.71 0.00 43.90 3.46
4478 6075 0.820226 CCTCAGATGCAGTCGAGGAA 59.180 55.000 18.71 0.00 43.90 3.36
4479 6076 2.498077 CCTCAGATGCAGTCGAGGA 58.502 57.895 18.71 5.57 43.90 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.