Multiple sequence alignment - TraesCS4A01G236800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G236800 chr4A 100.000 7134 0 0 1 7134 545607948 545600815 0.000000e+00 13175.0
1 TraesCS4A01G236800 chr4A 84.328 134 20 1 6868 7001 90082577 90082445 5.810000e-26 130.0
2 TraesCS4A01G236800 chr4A 87.179 78 5 5 2018 2094 146554010 146553937 4.590000e-12 84.2
3 TraesCS4A01G236800 chr4A 96.000 50 1 1 6527 6576 545601381 545601333 5.930000e-11 80.5
4 TraesCS4A01G236800 chr4A 96.000 50 1 1 6568 6616 545601422 545601373 5.930000e-11 80.5
5 TraesCS4A01G236800 chr4A 97.727 44 1 0 6799 6842 732395449 732395492 7.670000e-10 76.8
6 TraesCS4A01G236800 chr4D 93.853 3400 97 37 3038 6354 51074213 51077583 0.000000e+00 5018.0
7 TraesCS4A01G236800 chr4D 92.949 1404 45 16 791 2169 51071564 51072938 0.000000e+00 1995.0
8 TraesCS4A01G236800 chr4D 94.457 902 30 8 2146 3035 51073285 51074178 0.000000e+00 1371.0
9 TraesCS4A01G236800 chr4D 89.394 528 36 11 314 835 51071048 51071561 0.000000e+00 647.0
10 TraesCS4A01G236800 chr4D 92.086 278 19 3 6849 7125 51077789 51078064 8.680000e-104 388.0
11 TraesCS4A01G236800 chr4D 88.272 324 20 7 1 316 51070463 51070776 8.740000e-99 372.0
12 TraesCS4A01G236800 chr4D 80.625 320 50 9 3569 3879 463462754 463462438 3.330000e-58 237.0
13 TraesCS4A01G236800 chr4D 97.297 111 3 0 6669 6779 125078527 125078637 9.450000e-44 189.0
14 TraesCS4A01G236800 chr4D 85.714 168 13 6 6381 6538 51077556 51077722 4.430000e-37 167.0
15 TraesCS4A01G236800 chr4D 82.192 146 10 9 6539 6670 51077634 51077777 2.100000e-20 111.0
16 TraesCS4A01G236800 chr4D 97.727 44 1 0 6799 6842 505950853 505950896 7.670000e-10 76.8
17 TraesCS4A01G236800 chr4B 89.921 2530 121 53 790 3239 75201369 75203844 0.000000e+00 3136.0
18 TraesCS4A01G236800 chr4B 96.403 1251 28 6 5121 6354 75205724 75206974 0.000000e+00 2045.0
19 TraesCS4A01G236800 chr4B 93.823 1117 42 12 3414 4519 75204008 75205108 0.000000e+00 1655.0
20 TraesCS4A01G236800 chr4B 84.473 863 75 34 1 828 75200480 75201318 0.000000e+00 797.0
21 TraesCS4A01G236800 chr4B 94.624 372 17 3 4554 4924 75205360 75205729 2.230000e-159 573.0
22 TraesCS4A01G236800 chr4B 94.805 154 7 1 3277 3429 75203838 75203991 9.250000e-59 239.0
23 TraesCS4A01G236800 chr4B 84.906 159 16 5 4921 5079 43107185 43107335 3.450000e-33 154.0
24 TraesCS4A01G236800 chr4B 87.000 100 10 3 6443 6540 75207083 75207181 7.570000e-20 110.0
25 TraesCS4A01G236800 chr4B 86.869 99 9 2 6410 6508 75206988 75207082 2.720000e-19 108.0
26 TraesCS4A01G236800 chr4B 100.000 41 0 0 6630 6670 75207213 75207253 7.670000e-10 76.8
27 TraesCS4A01G236800 chr4B 97.727 44 1 0 6799 6842 547566594 547566637 7.670000e-10 76.8
28 TraesCS4A01G236800 chr4B 97.059 34 1 0 6579 6612 75207092 75207125 2.780000e-04 58.4
29 TraesCS4A01G236800 chr4B 96.875 32 1 0 808 839 75201328 75201359 4.000000e-03 54.7
30 TraesCS4A01G236800 chr2D 82.121 481 57 21 3492 3962 647811101 647811562 1.120000e-102 385.0
31 TraesCS4A01G236800 chr2D 89.937 159 15 1 4925 5082 252144511 252144669 3.370000e-48 204.0
32 TraesCS4A01G236800 chr2D 85.987 157 20 2 4928 5083 6114275 6114430 4.430000e-37 167.0
33 TraesCS4A01G236800 chr2D 95.745 47 2 0 6799 6845 241930709 241930663 7.670000e-10 76.8
34 TraesCS4A01G236800 chr2A 81.290 465 55 18 3513 3962 772678289 772677842 1.470000e-91 348.0
35 TraesCS4A01G236800 chr2A 85.417 144 15 3 4940 5083 779292289 779292152 2.070000e-30 145.0
36 TraesCS4A01G236800 chr2A 88.764 89 9 1 4929 5016 2612742 2612654 2.720000e-19 108.0
37 TraesCS4A01G236800 chr2A 93.750 48 2 1 6799 6846 762142519 762142565 3.570000e-08 71.3
38 TraesCS4A01G236800 chr2A 92.857 42 3 0 6474 6515 715403208 715403249 2.150000e-05 62.1
39 TraesCS4A01G236800 chr1D 82.527 372 40 16 3492 3860 93124918 93125267 3.230000e-78 303.0
40 TraesCS4A01G236800 chr1D 95.575 113 5 0 6667 6779 478911802 478911690 1.580000e-41 182.0
41 TraesCS4A01G236800 chr1D 82.609 115 8 9 2021 2132 205489355 205489460 2.740000e-14 91.6
42 TraesCS4A01G236800 chr2B 91.772 158 11 2 4926 5082 278907264 278907420 1.200000e-52 219.0
43 TraesCS4A01G236800 chr2B 94.915 118 4 2 6662 6779 690995022 690995137 4.400000e-42 183.0
44 TraesCS4A01G236800 chr2B 86.624 157 16 1 3247 3398 391142237 391142081 1.230000e-37 169.0
45 TraesCS4A01G236800 chr2B 97.143 35 1 0 6474 6508 799515281 799515247 7.730000e-05 60.2
46 TraesCS4A01G236800 chr5A 90.798 163 13 2 4921 5082 631862251 631862090 4.330000e-52 217.0
47 TraesCS4A01G236800 chr5A 87.143 70 8 1 2021 2090 37065513 37065581 2.130000e-10 78.7
48 TraesCS4A01G236800 chr5A 83.951 81 13 0 6917 6997 83637432 83637512 2.130000e-10 78.7
49 TraesCS4A01G236800 chr3D 88.750 160 17 1 4925 5083 592762735 592762576 2.030000e-45 195.0
50 TraesCS4A01G236800 chr3D 94.828 116 5 1 6664 6779 365000827 365000941 5.690000e-41 180.0
51 TraesCS4A01G236800 chr3D 85.294 136 20 0 6997 7132 320631956 320632091 2.680000e-29 141.0
52 TraesCS4A01G236800 chr3D 83.212 137 20 3 6995 7129 519304418 519304283 9.720000e-24 122.0
53 TraesCS4A01G236800 chr3D 100.000 29 0 0 6774 6802 174918999 174918971 4.000000e-03 54.7
54 TraesCS4A01G236800 chr5B 95.614 114 5 0 6666 6779 703469602 703469489 4.400000e-42 183.0
55 TraesCS4A01G236800 chr5B 84.892 139 21 0 6996 7134 441523982 441524120 2.680000e-29 141.0
56 TraesCS4A01G236800 chr5B 84.058 138 19 3 6999 7134 679555962 679555826 5.810000e-26 130.0
57 TraesCS4A01G236800 chr5B 88.060 67 7 1 2025 2091 47117968 47118033 2.130000e-10 78.7
58 TraesCS4A01G236800 chr7D 95.575 113 5 0 6667 6779 598598597 598598485 1.580000e-41 182.0
59 TraesCS4A01G236800 chr7D 85.833 120 17 0 6995 7114 623591932 623592051 2.090000e-25 128.0
60 TraesCS4A01G236800 chr1A 91.406 128 8 3 6669 6793 16443004 16442877 9.510000e-39 172.0
61 TraesCS4A01G236800 chr1A 87.619 105 10 3 2021 2124 262834268 262834166 1.260000e-22 119.0
62 TraesCS4A01G236800 chr5D 90.152 132 11 2 6649 6779 447459736 447459606 3.420000e-38 171.0
63 TraesCS4A01G236800 chr5D 87.324 71 8 1 2021 2091 46054795 46054864 5.930000e-11 80.5
64 TraesCS4A01G236800 chr5D 100.000 28 0 0 6775 6802 525392245 525392272 1.300000e-02 52.8
65 TraesCS4A01G236800 chr1B 89.051 137 12 2 6669 6802 90646621 90646757 4.430000e-37 167.0
66 TraesCS4A01G236800 chr1B 82.482 137 23 1 6999 7134 141721456 141721320 1.260000e-22 119.0
67 TraesCS4A01G236800 chr1B 93.243 74 3 2 2021 2093 301264264 301264336 2.720000e-19 108.0
68 TraesCS4A01G236800 chr1B 100.000 43 0 0 6799 6841 92879549 92879591 5.930000e-11 80.5
69 TraesCS4A01G236800 chr1B 100.000 29 0 0 6774 6802 143061143 143061171 4.000000e-03 54.7
70 TraesCS4A01G236800 chr6D 84.177 158 23 2 4926 5082 384225270 384225114 1.240000e-32 152.0
71 TraesCS4A01G236800 chr7B 87.603 121 15 0 6873 6993 585490871 585490751 2.680000e-29 141.0
72 TraesCS4A01G236800 chr7B 91.549 71 5 1 6664 6734 713590079 713590148 5.890000e-16 97.1
73 TraesCS4A01G236800 chr7B 91.379 58 4 1 6799 6855 501138371 501138314 2.130000e-10 78.7
74 TraesCS4A01G236800 chr7B 97.727 44 1 0 6799 6842 291130042 291130085 7.670000e-10 76.8
75 TraesCS4A01G236800 chr3A 84.173 139 22 0 6996 7134 423534058 423534196 1.250000e-27 135.0
76 TraesCS4A01G236800 chr3A 85.156 128 19 0 6873 7000 469738606 469738733 1.610000e-26 132.0
77 TraesCS4A01G236800 chr3A 82.857 140 23 1 6996 7134 519747184 519747323 2.700000e-24 124.0
78 TraesCS4A01G236800 chr7A 92.308 65 5 0 6669 6733 590480522 590480458 7.620000e-15 93.5
79 TraesCS4A01G236800 chr7A 91.803 61 5 0 6673 6733 20963144 20963204 1.280000e-12 86.1
80 TraesCS4A01G236800 chr6A 95.745 47 1 1 6799 6845 411865590 411865635 2.760000e-09 75.0
81 TraesCS4A01G236800 chr3B 100.000 35 0 0 6481 6515 766987765 766987731 1.660000e-06 65.8
82 TraesCS4A01G236800 chr6B 100.000 29 0 0 6776 6804 116706119 116706091 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G236800 chr4A 545600815 545607948 7133 True 13175.000000 13175 100.000000 1 7134 1 chr4A.!!$R3 7133
1 TraesCS4A01G236800 chr4D 51070463 51078064 7601 False 1258.625000 5018 89.864625 1 7125 8 chr4D.!!$F3 7124
2 TraesCS4A01G236800 chr4B 75200480 75207253 6773 False 804.809091 3136 92.895636 1 6670 11 chr4B.!!$F3 6669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
854 1236 0.108945 GACCGGTTCCGTTGAGGTAG 60.109 60.0 9.42 0.0 41.99 3.18 F
1317 1746 0.178891 AGCCCACTTCTCTCTCCCAA 60.179 55.0 0.00 0.0 0.00 4.12 F
2010 2454 0.322322 CAACTTGGCTGGTACGGGTA 59.678 55.0 0.00 0.0 33.56 3.69 F
3035 3867 0.395312 TTTCACTCCCTCCGTTCCAC 59.605 55.0 0.00 0.0 0.00 4.02 F
3224 4104 0.396060 TTGGCCTGGAATTTTGGTGC 59.604 50.0 3.32 0.0 0.00 5.01 F
3884 4798 0.413434 CCAAACCAGGAAGGGGGATT 59.587 55.0 0.00 0.0 43.89 3.01 F
4974 6117 0.467290 AAGCATGTCACCCCAAACGT 60.467 50.0 0.00 0.0 0.00 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1984 2423 2.353839 CAGCCAAGTTGTGCGTGC 60.354 61.111 1.45 0.0 0.00 5.34 R
2380 3202 2.424956 GGTCCTCTTCATTGCATCAACC 59.575 50.000 0.00 0.0 0.00 3.77 R
3839 4753 0.046242 TCACTCCCCATTCCATCCCT 59.954 55.000 0.00 0.0 0.00 4.20 R
4957 6100 0.387565 AAACGTTTGGGGTGACATGC 59.612 50.000 13.81 0.0 0.00 4.06 R
5198 6388 5.184671 AGAATTTTTCCTCTTCAGGTCATGC 59.815 40.000 0.00 0.0 41.28 4.06 R
5565 6762 3.075005 ATCGTCCTCACCCCCACG 61.075 66.667 0.00 0.0 0.00 4.94 R
6340 7549 0.685097 GTGGCAGAAGGGAGTACACA 59.315 55.000 0.00 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.740268 CATATATGGTCACCAATGCATGC 58.260 43.478 11.82 11.82 36.95 4.06
35 36 1.307355 TGGTCACCAATGCATGCGAG 61.307 55.000 14.09 5.00 0.00 5.03
40 41 2.158914 TCACCAATGCATGCGAGACTAT 60.159 45.455 14.09 0.00 0.00 2.12
171 172 5.986135 ACGATGATATTGAGCTCTAACAACC 59.014 40.000 16.19 5.91 0.00 3.77
182 191 3.659786 CTCTAACAACCGAACACCATGA 58.340 45.455 0.00 0.00 0.00 3.07
219 228 8.783093 TGACTAAAATCTTCATTTGAACACGAT 58.217 29.630 0.00 0.00 32.18 3.73
227 237 9.612620 ATCTTCATTTGAACACGATAAAGTTTC 57.387 29.630 0.00 0.00 0.00 2.78
248 258 8.308207 AGTTTCTTTTTAAGTGCCAAGTTTACA 58.692 29.630 0.00 0.00 0.00 2.41
258 268 2.032290 GCCAAGTTTACAAGACGGTGAC 60.032 50.000 0.00 0.00 0.00 3.67
276 286 4.208666 GGTGACTTAGTCAAGTTCAACGTC 59.791 45.833 17.25 0.39 45.18 4.34
374 659 3.891977 TCAAAATTTTCACGATCCACCCA 59.108 39.130 0.00 0.00 0.00 4.51
376 661 3.934457 AATTTTCACGATCCACCCAAC 57.066 42.857 0.00 0.00 0.00 3.77
377 662 2.350057 TTTTCACGATCCACCCAACA 57.650 45.000 0.00 0.00 0.00 3.33
414 702 4.630069 CAGTTTACCCAACATAGAGAACGG 59.370 45.833 0.00 0.00 37.93 4.44
415 703 4.529377 AGTTTACCCAACATAGAGAACGGA 59.471 41.667 0.00 0.00 37.93 4.69
450 739 6.735130 AGAAACCATCCGTAACAAAAAGAAG 58.265 36.000 0.00 0.00 0.00 2.85
500 789 1.816572 GCCCCAAAACGTCCACTTAGT 60.817 52.381 0.00 0.00 0.00 2.24
518 807 2.046283 GTCATCACGACGTCAGTTCA 57.954 50.000 17.16 4.22 34.19 3.18
536 826 3.883462 CGTTTCCCACGCATAGCA 58.117 55.556 0.00 0.00 43.37 3.49
554 844 7.410728 CGCATAGCAAACCACAAGAAAAATAAG 60.411 37.037 0.00 0.00 0.00 1.73
662 952 0.824109 TCCGGCATAGAGAACCACAG 59.176 55.000 0.00 0.00 0.00 3.66
692 983 0.874175 GAAAACCAACCGTGCCAAGC 60.874 55.000 0.00 0.00 0.00 4.01
717 1010 7.147976 CGAAGAGGAAAAGAAAAATGTCCAAT 58.852 34.615 0.00 0.00 0.00 3.16
735 1028 5.066893 GTCCAATAAGCACATGACATGACAT 59.933 40.000 22.19 4.76 0.00 3.06
759 1052 2.314323 TGACATGACATGATGACCGG 57.686 50.000 22.19 0.00 0.00 5.28
760 1053 1.554617 TGACATGACATGATGACCGGT 59.445 47.619 22.19 6.92 0.00 5.28
793 1086 2.347114 CCTCCATCCACACGCACA 59.653 61.111 0.00 0.00 0.00 4.57
804 1097 4.640855 ACGCACACTGGTCGACCG 62.641 66.667 28.70 23.92 39.43 4.79
854 1236 0.108945 GACCGGTTCCGTTGAGGTAG 60.109 60.000 9.42 0.00 41.99 3.18
914 1296 0.321653 ACGAAATGCAGTCCACCTCC 60.322 55.000 0.00 0.00 0.00 4.30
915 1297 1.361668 CGAAATGCAGTCCACCTCCG 61.362 60.000 0.00 0.00 0.00 4.63
916 1298 0.321653 GAAATGCAGTCCACCTCCGT 60.322 55.000 0.00 0.00 0.00 4.69
1000 1403 1.006400 AGGGAAAGGAATCCAGCAAGG 59.994 52.381 0.61 0.00 41.55 3.61
1307 1736 2.825836 CATCGCCCAGCCCACTTC 60.826 66.667 0.00 0.00 0.00 3.01
1310 1739 3.710722 CGCCCAGCCCACTTCTCT 61.711 66.667 0.00 0.00 0.00 3.10
1312 1741 2.297129 GCCCAGCCCACTTCTCTCT 61.297 63.158 0.00 0.00 0.00 3.10
1314 1743 1.621672 CCCAGCCCACTTCTCTCTCC 61.622 65.000 0.00 0.00 0.00 3.71
1315 1744 1.621672 CCAGCCCACTTCTCTCTCCC 61.622 65.000 0.00 0.00 0.00 4.30
1316 1745 0.906756 CAGCCCACTTCTCTCTCCCA 60.907 60.000 0.00 0.00 0.00 4.37
1317 1746 0.178891 AGCCCACTTCTCTCTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
1318 1747 0.693049 GCCCACTTCTCTCTCCCAAA 59.307 55.000 0.00 0.00 0.00 3.28
1448 1879 2.276617 CGCGTGCGGCTTGTAATG 60.277 61.111 6.30 0.00 40.44 1.90
1472 1903 8.141298 TGTTTTGGTTACTAGATCATCTACCA 57.859 34.615 3.21 3.21 31.51 3.25
1480 1911 3.609256 AGATCATCTACCAGGCTCAGA 57.391 47.619 0.00 0.00 0.00 3.27
1487 1918 4.767255 CCAGGCTCAGACGTGGCC 62.767 72.222 0.00 0.00 45.57 5.36
1528 1963 7.206981 ACTTGTGAATAAGATGAGGTTGTTG 57.793 36.000 0.00 0.00 0.00 3.33
1529 1964 6.772716 ACTTGTGAATAAGATGAGGTTGTTGT 59.227 34.615 0.00 0.00 0.00 3.32
1530 1965 7.285401 ACTTGTGAATAAGATGAGGTTGTTGTT 59.715 33.333 0.00 0.00 0.00 2.83
1646 2081 2.595463 TTGCTGCCAGTGTGAGCC 60.595 61.111 7.88 0.00 31.31 4.70
1658 2093 1.069227 GTGTGAGCCCGTGTCAATTTC 60.069 52.381 0.00 0.00 0.00 2.17
1664 2099 1.136169 GCCCGTGTCAATTTCGTACAC 60.136 52.381 0.00 0.00 40.05 2.90
1858 2297 7.333921 AGTCATGATCTTGCTAAAAGAGAGTTG 59.666 37.037 0.00 0.00 0.00 3.16
1984 2423 8.453320 TGAGTTGTATGCATCTGAAATACTTTG 58.547 33.333 0.19 0.00 0.00 2.77
2010 2454 0.322322 CAACTTGGCTGGTACGGGTA 59.678 55.000 0.00 0.00 33.56 3.69
2261 3081 4.720649 TTGTATAGTCACTCTGCACTCC 57.279 45.455 0.00 0.00 0.00 3.85
2283 3103 6.000840 TCCACAGTGCATTTTAATGACTACA 58.999 36.000 6.64 0.00 38.70 2.74
2380 3202 5.466728 TCAGAAAGATGTTCCTCTTGAAACG 59.533 40.000 0.00 0.00 35.67 3.60
2511 3333 5.762179 TCTTCAATCATGACTGGGTAAGT 57.238 39.130 4.03 0.00 43.85 2.24
2597 3419 5.716094 TCATCAGGCACATGAATTTTCTTG 58.284 37.500 0.00 5.03 38.07 3.02
2661 3483 0.739462 TCTTGCGGAAGTGTATGGCG 60.739 55.000 16.72 0.00 0.00 5.69
2684 3506 5.395778 CGCTATTAGATGACTACACGTGAAC 59.604 44.000 25.01 10.45 0.00 3.18
2685 3507 6.496571 GCTATTAGATGACTACACGTGAACT 58.503 40.000 25.01 5.87 0.00 3.01
2693 3515 6.671614 TGACTACACGTGAACTTGAAAAAT 57.328 33.333 25.01 0.00 0.00 1.82
2919 3751 7.686434 TCCTGCTAGTATACCTTTGTTTTCTT 58.314 34.615 0.00 0.00 0.00 2.52
2947 3779 7.484975 ACCGTTCATTGTTTATGTTCTTTCAA 58.515 30.769 0.00 0.00 35.64 2.69
2970 3802 3.118075 TGTGTTGAGGTTCATCTGTTCCA 60.118 43.478 0.00 0.00 0.00 3.53
3035 3867 0.395312 TTTCACTCCCTCCGTTCCAC 59.605 55.000 0.00 0.00 0.00 4.02
3048 3912 5.391950 CCTCCGTTCCACAACAAGAATTATG 60.392 44.000 0.00 0.00 32.14 1.90
3128 4008 5.550290 TGTCACTTGCTAATCACTCATTCA 58.450 37.500 0.00 0.00 0.00 2.57
3149 4029 9.512435 CATTCATGGAGAAATAAAAGCTAGTTG 57.488 33.333 0.00 0.00 40.22 3.16
3219 4099 7.340487 TGTTTTACAATTTTGGCCTGGAATTTT 59.660 29.630 3.32 3.87 0.00 1.82
3224 4104 0.396060 TTGGCCTGGAATTTTGGTGC 59.604 50.000 3.32 0.00 0.00 5.01
3245 4125 5.048713 GTGCACCTATTTTCAGTAAAGCTGT 60.049 40.000 5.22 0.00 45.23 4.40
3246 4126 5.181245 TGCACCTATTTTCAGTAAAGCTGTC 59.819 40.000 0.00 0.00 45.23 3.51
3354 4234 5.701290 CCGGTAAATGAATAGGAATCAGGTC 59.299 44.000 0.00 0.00 0.00 3.85
3508 4420 4.607293 TCAGTACTAGCATAATGCCTGG 57.393 45.455 0.00 0.00 46.52 4.45
3510 4422 3.071602 CAGTACTAGCATAATGCCTGGGT 59.928 47.826 0.00 0.00 46.52 4.51
3696 4609 3.874383 TTCAAAACATGAGTGAGGGGA 57.126 42.857 0.00 0.00 39.77 4.81
3839 4753 7.075797 TGGGTTCTAGATGGATGAGAAAGATA 58.924 38.462 0.00 0.00 31.26 1.98
3872 4786 2.158667 GGGAGTGAACTCTTCCAAACCA 60.159 50.000 10.17 0.00 42.48 3.67
3881 4795 1.857777 TTCCAAACCAGGAAGGGGG 59.142 57.895 0.00 0.00 42.56 5.40
3882 4796 0.703056 TTCCAAACCAGGAAGGGGGA 60.703 55.000 0.00 0.00 42.56 4.81
3883 4797 0.479589 TCCAAACCAGGAAGGGGGAT 60.480 55.000 0.00 0.00 43.89 3.85
3884 4798 0.413434 CCAAACCAGGAAGGGGGATT 59.587 55.000 0.00 0.00 43.89 3.01
3885 4799 1.643811 CCAAACCAGGAAGGGGGATTA 59.356 52.381 0.00 0.00 43.89 1.75
3900 4825 4.514792 GGGGGATTAGGATGAGGGAGATTA 60.515 50.000 0.00 0.00 0.00 1.75
3925 4850 4.946160 TGGAATGGGGATTGAACTTACT 57.054 40.909 0.00 0.00 0.00 2.24
4033 4958 7.589395 TGCGAAGTGATTTGTATTAACATGTT 58.411 30.769 16.68 16.68 34.97 2.71
4035 4960 9.549509 GCGAAGTGATTTGTATTAACATGTTTA 57.450 29.630 17.78 8.27 34.97 2.01
4049 4974 4.559153 ACATGTTTATTCAAAGCACAGCC 58.441 39.130 0.00 0.00 0.00 4.85
4067 4992 3.494626 CAGCCGACATGTATTGATGTACC 59.505 47.826 0.00 0.00 36.67 3.34
4069 4994 3.494626 GCCGACATGTATTGATGTACCAG 59.505 47.826 0.00 0.00 36.67 4.00
4317 5242 2.682594 TCATCTGGTGAGAGTATGGGG 58.317 52.381 0.00 0.00 31.80 4.96
4347 5272 2.774687 AGTAACTTAACACCCCAAGCG 58.225 47.619 0.00 0.00 0.00 4.68
4514 5439 7.448469 ACCTGGTTATATTGCCTGATTCATTAC 59.552 37.037 0.00 0.00 0.00 1.89
4576 5661 8.200120 TCCTGTCTGTAAATGACTATTGATCAG 58.800 37.037 0.00 0.00 35.63 2.90
4623 5766 8.150827 TGCAATATATCTATCTTGTTAGGCCT 57.849 34.615 11.78 11.78 0.00 5.19
4794 5937 6.618287 ATTGAATTTCATTTCGATCCGCTA 57.382 33.333 0.00 0.00 0.00 4.26
4795 5938 6.618287 TTGAATTTCATTTCGATCCGCTAT 57.382 33.333 0.00 0.00 0.00 2.97
4910 6053 5.592282 TGCAACTGTTTCTGTGAAAATCCTA 59.408 36.000 0.00 0.00 0.00 2.94
4917 6060 9.219603 CTGTTTCTGTGAAAATCCTAGTTGATA 57.780 33.333 0.00 0.00 0.00 2.15
4918 6061 9.567776 TGTTTCTGTGAAAATCCTAGTTGATAA 57.432 29.630 0.00 0.00 0.00 1.75
4925 6068 9.586435 GTGAAAATCCTAGTTGATAATTTTGGG 57.414 33.333 0.00 0.00 31.58 4.12
4926 6069 9.540538 TGAAAATCCTAGTTGATAATTTTGGGA 57.459 29.630 0.00 0.00 31.58 4.37
4965 6108 4.088648 CGTTCGGATTTTAAGCATGTCAC 58.911 43.478 0.00 0.00 0.00 3.67
4968 6111 2.099098 CGGATTTTAAGCATGTCACCCC 59.901 50.000 0.00 0.00 0.00 4.95
4969 6112 3.096092 GGATTTTAAGCATGTCACCCCA 58.904 45.455 0.00 0.00 0.00 4.96
4974 6117 0.467290 AAGCATGTCACCCCAAACGT 60.467 50.000 0.00 0.00 0.00 3.99
5072 6241 0.739813 GCCAACCTCGCGTGAACTAT 60.740 55.000 10.21 0.00 0.00 2.12
5093 6283 6.833416 ACTATAGTTGCCATGCTTAAAATCCA 59.167 34.615 0.00 0.00 0.00 3.41
5097 6287 3.936564 TGCCATGCTTAAAATCCAAACC 58.063 40.909 0.00 0.00 0.00 3.27
5101 6291 5.178061 CCATGCTTAAAATCCAAACCTTCC 58.822 41.667 0.00 0.00 0.00 3.46
5134 6324 3.134574 TCCGTAATTTTGTGGCTGACT 57.865 42.857 0.00 0.00 0.00 3.41
5565 6762 1.151679 GCTGGGGGAGCCCTAAATC 59.848 63.158 5.38 0.00 44.66 2.17
5904 7106 1.762370 TCGCTGGCTTATTGAGATCCA 59.238 47.619 0.00 0.00 0.00 3.41
6143 7345 5.242393 ACATGTTGTTCTTGCTGCTAATCTT 59.758 36.000 0.00 0.00 0.00 2.40
6179 7381 3.200165 GGATACTGGGTATTAGGCATCCC 59.800 52.174 0.00 0.00 40.26 3.85
6246 7448 8.516268 CGTGAATGATATTATATTGTCGAGTCG 58.484 37.037 6.09 6.09 0.00 4.18
6278 7487 2.880268 CCTGGACGTGTGTACCGATATA 59.120 50.000 0.00 0.00 0.00 0.86
6340 7549 8.307582 AGTGTACAGTCTGCCTTTAGTATATT 57.692 34.615 0.00 0.00 0.00 1.28
6341 7550 8.198109 AGTGTACAGTCTGCCTTTAGTATATTG 58.802 37.037 0.00 0.00 0.00 1.90
6354 7563 8.925338 CCTTTAGTATATTGTGTACTCCCTTCT 58.075 37.037 0.00 0.00 34.43 2.85
6355 7564 9.751542 CTTTAGTATATTGTGTACTCCCTTCTG 57.248 37.037 0.00 0.00 34.43 3.02
6356 7565 6.163135 AGTATATTGTGTACTCCCTTCTGC 57.837 41.667 0.00 0.00 0.00 4.26
6358 7567 1.429930 TTGTGTACTCCCTTCTGCCA 58.570 50.000 0.00 0.00 0.00 4.92
6359 7568 0.685097 TGTGTACTCCCTTCTGCCAC 59.315 55.000 0.00 0.00 0.00 5.01
6362 7571 1.267121 GTACTCCCTTCTGCCACTCA 58.733 55.000 0.00 0.00 0.00 3.41
6363 7572 1.623811 GTACTCCCTTCTGCCACTCAA 59.376 52.381 0.00 0.00 0.00 3.02
6366 7575 0.250295 TCCCTTCTGCCACTCAAACG 60.250 55.000 0.00 0.00 0.00 3.60
6367 7576 1.237285 CCCTTCTGCCACTCAAACGG 61.237 60.000 0.00 0.00 0.00 4.44
6368 7577 0.250295 CCTTCTGCCACTCAAACGGA 60.250 55.000 0.00 0.00 0.00 4.69
6369 7578 1.611673 CCTTCTGCCACTCAAACGGAT 60.612 52.381 0.00 0.00 0.00 4.18
6370 7579 1.466167 CTTCTGCCACTCAAACGGATG 59.534 52.381 0.00 0.00 0.00 3.51
6371 7580 0.396435 TCTGCCACTCAAACGGATGT 59.604 50.000 0.00 0.00 0.00 3.06
6372 7581 1.621317 TCTGCCACTCAAACGGATGTA 59.379 47.619 0.00 0.00 0.00 2.29
6373 7582 2.236146 TCTGCCACTCAAACGGATGTAT 59.764 45.455 0.00 0.00 0.00 2.29
6374 7583 2.609459 CTGCCACTCAAACGGATGTATC 59.391 50.000 0.00 0.00 0.00 2.24
6375 7584 2.236146 TGCCACTCAAACGGATGTATCT 59.764 45.455 0.00 0.00 0.00 1.98
6376 7585 3.449377 TGCCACTCAAACGGATGTATCTA 59.551 43.478 0.00 0.00 0.00 1.98
6377 7586 4.081365 TGCCACTCAAACGGATGTATCTAA 60.081 41.667 0.00 0.00 0.00 2.10
6378 7587 5.057149 GCCACTCAAACGGATGTATCTAAT 58.943 41.667 0.00 0.00 0.00 1.73
6379 7588 5.050091 GCCACTCAAACGGATGTATCTAATG 60.050 44.000 0.00 0.00 0.00 1.90
6380 7589 5.050091 CCACTCAAACGGATGTATCTAATGC 60.050 44.000 0.00 0.00 0.00 3.56
6381 7590 5.755375 CACTCAAACGGATGTATCTAATGCT 59.245 40.000 0.00 0.00 0.00 3.79
6382 7591 5.755375 ACTCAAACGGATGTATCTAATGCTG 59.245 40.000 0.00 0.00 0.00 4.41
6383 7592 4.511454 TCAAACGGATGTATCTAATGCTGC 59.489 41.667 0.00 0.00 0.00 5.25
6384 7593 3.045601 ACGGATGTATCTAATGCTGCC 57.954 47.619 0.00 0.00 0.00 4.85
6385 7594 2.634940 ACGGATGTATCTAATGCTGCCT 59.365 45.455 0.00 0.00 0.00 4.75
6386 7595 3.071602 ACGGATGTATCTAATGCTGCCTT 59.928 43.478 0.00 0.00 0.00 4.35
6387 7596 4.067896 CGGATGTATCTAATGCTGCCTTT 58.932 43.478 0.00 0.00 0.00 3.11
6388 7597 5.221641 ACGGATGTATCTAATGCTGCCTTTA 60.222 40.000 0.00 0.00 0.00 1.85
6389 7598 5.349817 CGGATGTATCTAATGCTGCCTTTAG 59.650 44.000 11.24 11.24 32.70 1.85
6390 7599 6.234177 GGATGTATCTAATGCTGCCTTTAGT 58.766 40.000 15.01 8.43 33.04 2.24
6391 7600 7.386851 GGATGTATCTAATGCTGCCTTTAGTA 58.613 38.462 15.01 7.77 33.04 1.82
6392 7601 8.043710 GGATGTATCTAATGCTGCCTTTAGTAT 58.956 37.037 15.01 11.21 33.04 2.12
6398 7607 9.664332 ATCTAATGCTGCCTTTAGTATATCTTG 57.336 33.333 15.01 0.00 33.04 3.02
6399 7608 8.651389 TCTAATGCTGCCTTTAGTATATCTTGT 58.349 33.333 15.01 0.00 33.04 3.16
6400 7609 9.929180 CTAATGCTGCCTTTAGTATATCTTGTA 57.071 33.333 0.00 0.00 0.00 2.41
6401 7610 8.608844 AATGCTGCCTTTAGTATATCTTGTAC 57.391 34.615 0.00 0.00 0.00 2.90
6402 7611 7.361457 TGCTGCCTTTAGTATATCTTGTACT 57.639 36.000 0.00 0.00 36.44 2.73
6403 7612 7.434492 TGCTGCCTTTAGTATATCTTGTACTC 58.566 38.462 0.00 0.00 34.43 2.59
6404 7613 6.869388 GCTGCCTTTAGTATATCTTGTACTCC 59.131 42.308 0.00 0.00 34.43 3.85
6405 7614 7.299246 TGCCTTTAGTATATCTTGTACTCCC 57.701 40.000 0.00 0.00 34.43 4.30
6406 7615 7.073854 TGCCTTTAGTATATCTTGTACTCCCT 58.926 38.462 0.00 0.00 34.43 4.20
6407 7616 7.567622 TGCCTTTAGTATATCTTGTACTCCCTT 59.432 37.037 0.00 0.00 34.43 3.95
6408 7617 8.089597 GCCTTTAGTATATCTTGTACTCCCTTC 58.910 40.741 0.00 0.00 34.43 3.46
6416 7625 1.729586 TGTACTCCCTTCTGCCACTT 58.270 50.000 0.00 0.00 0.00 3.16
6420 7629 3.141767 ACTCCCTTCTGCCACTTAAAC 57.858 47.619 0.00 0.00 0.00 2.01
6453 7662 8.039603 TCTAACGCTGAAACATGTTTTGATAT 57.960 30.769 24.02 12.04 32.11 1.63
6536 7809 9.489084 TTCATATTAACAGAATATGGAACGGAG 57.511 33.333 14.30 0.00 39.73 4.63
6537 7810 8.094548 TCATATTAACAGAATATGGAACGGAGG 58.905 37.037 14.30 0.00 39.73 4.30
6538 7811 3.560636 AACAGAATATGGAACGGAGGG 57.439 47.619 0.00 0.00 0.00 4.30
6539 7812 2.759355 ACAGAATATGGAACGGAGGGA 58.241 47.619 0.00 0.00 0.00 4.20
6540 7813 3.318313 ACAGAATATGGAACGGAGGGAT 58.682 45.455 0.00 0.00 0.00 3.85
6541 7814 4.489737 ACAGAATATGGAACGGAGGGATA 58.510 43.478 0.00 0.00 0.00 2.59
6542 7815 5.094387 ACAGAATATGGAACGGAGGGATAT 58.906 41.667 0.00 0.00 0.00 1.63
6543 7816 6.261435 ACAGAATATGGAACGGAGGGATATA 58.739 40.000 0.00 0.00 0.00 0.86
6544 7817 6.903534 ACAGAATATGGAACGGAGGGATATAT 59.096 38.462 0.00 0.00 0.00 0.86
6545 7818 7.070074 ACAGAATATGGAACGGAGGGATATATC 59.930 40.741 3.96 3.96 0.00 1.63
6546 7819 7.288852 CAGAATATGGAACGGAGGGATATATCT 59.711 40.741 12.42 0.00 0.00 1.98
6547 7820 6.985653 ATATGGAACGGAGGGATATATCTG 57.014 41.667 12.42 0.00 0.00 2.90
6548 7821 4.127918 TGGAACGGAGGGATATATCTGT 57.872 45.455 12.42 0.21 36.60 3.41
6549 7822 4.489737 TGGAACGGAGGGATATATCTGTT 58.510 43.478 12.42 5.44 45.43 3.16
6550 7823 4.905456 TGGAACGGAGGGATATATCTGTTT 59.095 41.667 12.42 0.00 43.38 2.83
6551 7824 5.221641 TGGAACGGAGGGATATATCTGTTTG 60.222 44.000 12.42 3.57 43.38 2.93
6552 7825 5.011738 GGAACGGAGGGATATATCTGTTTGA 59.988 44.000 12.42 0.00 43.38 2.69
6553 7826 6.463897 GGAACGGAGGGATATATCTGTTTGAA 60.464 42.308 12.42 0.00 43.38 2.69
6554 7827 6.688073 ACGGAGGGATATATCTGTTTGAAT 57.312 37.500 12.42 0.00 30.82 2.57
6555 7828 6.702329 ACGGAGGGATATATCTGTTTGAATC 58.298 40.000 12.42 0.71 30.82 2.52
6556 7829 6.498651 ACGGAGGGATATATCTGTTTGAATCT 59.501 38.462 12.42 0.00 30.82 2.40
6557 7830 6.815641 CGGAGGGATATATCTGTTTGAATCTG 59.184 42.308 12.42 2.02 0.00 2.90
6558 7831 6.597280 GGAGGGATATATCTGTTTGAATCTGC 59.403 42.308 12.42 0.14 0.00 4.26
6559 7832 7.327064 AGGGATATATCTGTTTGAATCTGCT 57.673 36.000 12.42 0.00 0.00 4.24
6560 7833 7.393216 AGGGATATATCTGTTTGAATCTGCTC 58.607 38.462 12.42 0.00 0.00 4.26
6561 7834 6.312426 GGGATATATCTGTTTGAATCTGCTCG 59.688 42.308 12.42 0.00 0.00 5.03
6562 7835 7.093354 GGATATATCTGTTTGAATCTGCTCGA 58.907 38.462 12.42 0.00 0.00 4.04
6563 7836 7.600375 GGATATATCTGTTTGAATCTGCTCGAA 59.400 37.037 12.42 0.00 0.00 3.71
6564 7837 4.935885 ATCTGTTTGAATCTGCTCGAAC 57.064 40.909 0.00 0.00 39.33 3.95
6565 7838 3.727726 TCTGTTTGAATCTGCTCGAACA 58.272 40.909 6.39 6.39 44.09 3.18
6574 7847 3.510388 TCTGCTCGAACAGATGTAAGG 57.490 47.619 14.39 0.00 41.72 2.69
6575 7848 3.089284 TCTGCTCGAACAGATGTAAGGA 58.911 45.455 14.39 0.00 41.72 3.36
6576 7849 3.129462 TCTGCTCGAACAGATGTAAGGAG 59.871 47.826 14.39 0.00 41.72 3.69
6577 7850 2.166459 TGCTCGAACAGATGTAAGGAGG 59.834 50.000 8.82 0.00 0.00 4.30
6578 7851 2.482142 GCTCGAACAGATGTAAGGAGGG 60.482 54.545 8.82 0.00 0.00 4.30
6579 7852 3.024547 CTCGAACAGATGTAAGGAGGGA 58.975 50.000 0.00 0.00 0.00 4.20
6580 7853 3.639094 CTCGAACAGATGTAAGGAGGGAT 59.361 47.826 0.00 0.00 0.00 3.85
6581 7854 4.800023 TCGAACAGATGTAAGGAGGGATA 58.200 43.478 0.00 0.00 0.00 2.59
6582 7855 5.394738 TCGAACAGATGTAAGGAGGGATAT 58.605 41.667 0.00 0.00 0.00 1.63
6583 7856 6.549242 TCGAACAGATGTAAGGAGGGATATA 58.451 40.000 0.00 0.00 0.00 0.86
6584 7857 7.182760 TCGAACAGATGTAAGGAGGGATATAT 58.817 38.462 0.00 0.00 0.00 0.86
6585 7858 7.339721 TCGAACAGATGTAAGGAGGGATATATC 59.660 40.741 3.96 3.96 0.00 1.63
6586 7859 7.340743 CGAACAGATGTAAGGAGGGATATATCT 59.659 40.741 12.42 0.00 32.29 1.98
6587 7860 7.969690 ACAGATGTAAGGAGGGATATATCTG 57.030 40.000 12.42 14.21 45.60 2.90
6588 7861 7.483018 ACAGATGTAAGGAGGGATATATCTGT 58.517 38.462 15.17 15.17 46.84 3.41
6589 7862 8.372877 CAGATGTAAGGAGGGATATATCTGTT 57.627 38.462 12.42 0.00 40.24 3.16
6590 7863 8.820831 CAGATGTAAGGAGGGATATATCTGTTT 58.179 37.037 12.42 3.95 40.24 2.83
6591 7864 8.820831 AGATGTAAGGAGGGATATATCTGTTTG 58.179 37.037 12.42 0.00 31.34 2.93
6592 7865 8.742125 ATGTAAGGAGGGATATATCTGTTTGA 57.258 34.615 12.42 0.00 0.00 2.69
6593 7866 8.561536 TGTAAGGAGGGATATATCTGTTTGAA 57.438 34.615 12.42 0.00 0.00 2.69
6594 7867 9.170890 TGTAAGGAGGGATATATCTGTTTGAAT 57.829 33.333 12.42 0.00 0.00 2.57
6595 7868 9.660180 GTAAGGAGGGATATATCTGTTTGAATC 57.340 37.037 12.42 0.71 0.00 2.52
6596 7869 8.517323 AAGGAGGGATATATCTGTTTGAATCT 57.483 34.615 12.42 0.00 0.00 2.40
6597 7870 7.915930 AGGAGGGATATATCTGTTTGAATCTG 58.084 38.462 12.42 0.00 0.00 2.90
6598 7871 6.597280 GGAGGGATATATCTGTTTGAATCTGC 59.403 42.308 12.42 0.14 0.00 4.26
6599 7872 7.327064 AGGGATATATCTGTTTGAATCTGCT 57.673 36.000 12.42 0.00 0.00 4.24
6600 7873 7.393216 AGGGATATATCTGTTTGAATCTGCTC 58.607 38.462 12.42 0.00 0.00 4.26
6601 7874 6.312426 GGGATATATCTGTTTGAATCTGCTCG 59.688 42.308 12.42 0.00 0.00 5.03
6602 7875 7.093354 GGATATATCTGTTTGAATCTGCTCGA 58.907 38.462 12.42 0.00 0.00 4.04
6603 7876 7.600375 GGATATATCTGTTTGAATCTGCTCGAA 59.400 37.037 12.42 0.00 0.00 3.71
6604 7877 4.935885 ATCTGTTTGAATCTGCTCGAAC 57.064 40.909 0.00 0.00 39.33 3.95
6605 7878 3.727726 TCTGTTTGAATCTGCTCGAACA 58.272 40.909 6.39 6.39 44.09 3.18
6672 7963 9.823647 TGATTTGAGATCCAAGAAATAGTACTC 57.176 33.333 0.00 0.00 35.94 2.59
6673 7964 9.267084 GATTTGAGATCCAAGAAATAGTACTCC 57.733 37.037 0.00 0.00 35.94 3.85
6674 7965 6.732896 TGAGATCCAAGAAATAGTACTCCC 57.267 41.667 0.00 0.00 0.00 4.30
6676 7967 6.551601 TGAGATCCAAGAAATAGTACTCCCTC 59.448 42.308 0.00 0.00 0.00 4.30
6677 7968 6.688554 AGATCCAAGAAATAGTACTCCCTCT 58.311 40.000 0.00 0.00 0.00 3.69
6678 7969 6.553100 AGATCCAAGAAATAGTACTCCCTCTG 59.447 42.308 0.00 0.00 0.00 3.35
6679 7970 5.590818 TCCAAGAAATAGTACTCCCTCTGT 58.409 41.667 0.00 0.00 0.00 3.41
6680 7971 5.657302 TCCAAGAAATAGTACTCCCTCTGTC 59.343 44.000 0.00 0.00 0.00 3.51
6681 7972 5.163395 CCAAGAAATAGTACTCCCTCTGTCC 60.163 48.000 0.00 0.00 0.00 4.02
6682 7973 5.475398 AGAAATAGTACTCCCTCTGTCCT 57.525 43.478 0.00 0.00 0.00 3.85
6683 7974 6.593759 AGAAATAGTACTCCCTCTGTCCTA 57.406 41.667 0.00 0.00 0.00 2.94
6684 7975 6.982899 AGAAATAGTACTCCCTCTGTCCTAA 58.017 40.000 0.00 0.00 0.00 2.69
6685 7976 7.420029 AGAAATAGTACTCCCTCTGTCCTAAA 58.580 38.462 0.00 0.00 0.00 1.85
6686 7977 7.899709 AGAAATAGTACTCCCTCTGTCCTAAAA 59.100 37.037 0.00 0.00 0.00 1.52
6687 7978 8.625467 AAATAGTACTCCCTCTGTCCTAAAAT 57.375 34.615 0.00 0.00 0.00 1.82
6688 7979 8.625467 AATAGTACTCCCTCTGTCCTAAAATT 57.375 34.615 0.00 0.00 0.00 1.82
6689 7980 6.547930 AGTACTCCCTCTGTCCTAAAATTC 57.452 41.667 0.00 0.00 0.00 2.17
6690 7981 6.265304 AGTACTCCCTCTGTCCTAAAATTCT 58.735 40.000 0.00 0.00 0.00 2.40
6691 7982 6.731448 AGTACTCCCTCTGTCCTAAAATTCTT 59.269 38.462 0.00 0.00 0.00 2.52
6692 7983 5.810095 ACTCCCTCTGTCCTAAAATTCTTG 58.190 41.667 0.00 0.00 0.00 3.02
6693 7984 5.310857 ACTCCCTCTGTCCTAAAATTCTTGT 59.689 40.000 0.00 0.00 0.00 3.16
6694 7985 5.805728 TCCCTCTGTCCTAAAATTCTTGTC 58.194 41.667 0.00 0.00 0.00 3.18
6695 7986 5.548056 TCCCTCTGTCCTAAAATTCTTGTCT 59.452 40.000 0.00 0.00 0.00 3.41
6696 7987 6.044404 TCCCTCTGTCCTAAAATTCTTGTCTT 59.956 38.462 0.00 0.00 0.00 3.01
6697 7988 7.236847 TCCCTCTGTCCTAAAATTCTTGTCTTA 59.763 37.037 0.00 0.00 0.00 2.10
6698 7989 7.550906 CCCTCTGTCCTAAAATTCTTGTCTTAG 59.449 40.741 0.00 0.00 0.00 2.18
6699 7990 8.314751 CCTCTGTCCTAAAATTCTTGTCTTAGA 58.685 37.037 0.00 0.00 0.00 2.10
6700 7991 9.883142 CTCTGTCCTAAAATTCTTGTCTTAGAT 57.117 33.333 0.00 0.00 0.00 1.98
6834 8125 9.765795 ATCTAAGACAATAATTTTAGGACGGAG 57.234 33.333 0.00 0.00 0.00 4.63
6835 8126 8.202137 TCTAAGACAATAATTTTAGGACGGAGG 58.798 37.037 0.00 0.00 0.00 4.30
6836 8127 5.681639 AGACAATAATTTTAGGACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
6837 8128 5.427481 AGACAATAATTTTAGGACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
6838 8129 5.681639 ACAATAATTTTAGGACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
6839 8130 5.191124 ACAATAATTTTAGGACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
6840 8131 6.384886 ACAATAATTTTAGGACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
6841 8132 7.072076 ACAATAATTTTAGGACGGAGGGAGTAT 59.928 37.037 0.00 0.00 0.00 2.12
6842 8133 5.548181 AATTTTAGGACGGAGGGAGTATC 57.452 43.478 0.00 0.00 0.00 2.24
6843 8134 3.967467 TTTAGGACGGAGGGAGTATCT 57.033 47.619 0.00 0.00 33.73 1.98
6844 8135 2.953284 TAGGACGGAGGGAGTATCTG 57.047 55.000 0.00 0.00 33.73 2.90
6845 8136 1.223501 AGGACGGAGGGAGTATCTGA 58.776 55.000 0.00 0.00 33.73 3.27
6846 8137 1.783979 AGGACGGAGGGAGTATCTGAT 59.216 52.381 0.00 0.00 33.73 2.90
6847 8138 2.178106 AGGACGGAGGGAGTATCTGATT 59.822 50.000 0.00 0.00 33.73 2.57
6952 8243 7.254421 GCTTTTATGACTTTTTGGTCAAAGTGG 60.254 37.037 3.59 0.00 45.23 4.00
6958 8249 6.109156 ACTTTTTGGTCAAAGTGGAAAAGT 57.891 33.333 6.28 6.28 43.88 2.66
6967 8258 5.408299 GTCAAAGTGGAAAAGTTGCAAAAGT 59.592 36.000 0.00 0.00 30.97 2.66
6989 8280 7.812309 AGTAGAAGCAAAAACTCAAACAAAC 57.188 32.000 0.00 0.00 0.00 2.93
6990 8281 5.761818 AGAAGCAAAAACTCAAACAAACG 57.238 34.783 0.00 0.00 0.00 3.60
7026 8317 8.134261 AGCATCTCTAGCATATCACGTATAATG 58.866 37.037 0.00 0.00 0.00 1.90
7055 8346 4.217983 ACCCGCAAAATAACCGTCAAAATA 59.782 37.500 0.00 0.00 0.00 1.40
7097 8388 4.119862 CCGTCCGATCAGACAATGTAAAT 58.880 43.478 9.67 0.00 36.52 1.40
7099 8390 4.550831 CGTCCGATCAGACAATGTAAATGC 60.551 45.833 9.67 0.00 36.52 3.56
7101 8392 3.283256 CGATCAGACAATGTAAATGCGC 58.717 45.455 0.00 0.00 0.00 6.09
7103 8394 2.710377 TCAGACAATGTAAATGCGCCT 58.290 42.857 4.18 0.00 0.00 5.52
7104 8395 2.677836 TCAGACAATGTAAATGCGCCTC 59.322 45.455 4.18 0.00 0.00 4.70
7131 8422 1.324383 AAAAATTTGAGGGTCGCGGT 58.676 45.000 6.13 0.00 0.00 5.68
7132 8423 2.188062 AAAATTTGAGGGTCGCGGTA 57.812 45.000 6.13 0.00 0.00 4.02
7133 8424 2.188062 AAATTTGAGGGTCGCGGTAA 57.812 45.000 6.13 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.212636 TGAATGATAGTCTCGCATGCATTG 59.787 41.667 19.57 6.87 0.00 2.82
32 33 4.056740 AGCATGCTTGAATGATAGTCTCG 58.943 43.478 16.30 0.00 0.00 4.04
35 36 5.888105 ACAAAGCATGCTTGAATGATAGTC 58.112 37.500 32.54 0.00 36.26 2.59
40 41 4.552355 CAAGACAAAGCATGCTTGAATGA 58.448 39.130 32.54 0.00 41.58 2.57
171 172 7.594758 AGTCAATAACAAAAATCATGGTGTTCG 59.405 33.333 0.00 0.00 35.82 3.95
212 221 9.016623 GCACTTAAAAAGAAACTTTATCGTGTT 57.983 29.630 0.00 0.00 30.56 3.32
219 228 9.713713 AAACTTGGCACTTAAAAAGAAACTTTA 57.286 25.926 0.00 0.00 0.00 1.85
220 229 8.615878 AAACTTGGCACTTAAAAAGAAACTTT 57.384 26.923 0.00 0.00 0.00 2.66
222 231 8.308207 TGTAAACTTGGCACTTAAAAAGAAACT 58.692 29.630 0.00 0.00 0.00 2.66
227 237 7.044314 CGTCTTGTAAACTTGGCACTTAAAAAG 60.044 37.037 0.00 0.00 0.00 2.27
233 243 2.616842 CCGTCTTGTAAACTTGGCACTT 59.383 45.455 0.00 0.00 0.00 3.16
248 258 4.098960 TGAACTTGACTAAGTCACCGTCTT 59.901 41.667 0.00 0.00 46.14 3.01
258 268 3.635331 TCCGACGTTGAACTTGACTAAG 58.365 45.455 3.74 0.00 39.86 2.18
276 286 2.489971 TGCTTAACCACAACTTCTCCG 58.510 47.619 0.00 0.00 0.00 4.63
374 659 6.592220 GGTAAACTGTGTGTTCCAAAAATGTT 59.408 34.615 0.00 0.00 38.03 2.71
376 661 5.522097 GGGTAAACTGTGTGTTCCAAAAATG 59.478 40.000 0.00 0.00 38.03 2.32
377 662 5.187967 TGGGTAAACTGTGTGTTCCAAAAAT 59.812 36.000 0.00 0.00 38.03 1.82
414 702 5.983118 ACGGATGGTTTCTTTTCATTTTGTC 59.017 36.000 0.00 0.00 0.00 3.18
415 703 5.912892 ACGGATGGTTTCTTTTCATTTTGT 58.087 33.333 0.00 0.00 0.00 2.83
450 739 4.408694 GCTTTTCATTTCATGCCATTTGC 58.591 39.130 0.00 0.00 41.77 3.68
500 789 1.662026 CGTGAACTGACGTCGTGATGA 60.662 52.381 11.62 0.00 34.56 2.92
562 852 8.267183 TCAACCTGGCATGGATATATATACAAG 58.733 37.037 11.74 8.64 28.73 3.16
566 856 7.623278 TGACTCAACCTGGCATGGATATATATA 59.377 37.037 9.53 0.00 0.00 0.86
567 857 6.444816 TGACTCAACCTGGCATGGATATATAT 59.555 38.462 9.53 0.00 0.00 0.86
568 858 5.784906 TGACTCAACCTGGCATGGATATATA 59.215 40.000 9.53 0.00 0.00 0.86
569 859 4.598807 TGACTCAACCTGGCATGGATATAT 59.401 41.667 9.53 0.00 0.00 0.86
662 952 3.554129 CGGTTGGTTTTCCCTCATTTTCC 60.554 47.826 0.00 0.00 39.73 3.13
692 983 6.072112 TGGACATTTTTCTTTTCCTCTTCG 57.928 37.500 0.00 0.00 0.00 3.79
717 1010 4.577875 TGTCATGTCATGTCATGTGCTTA 58.422 39.130 25.46 9.26 43.70 3.09
735 1028 4.193865 GGTCATCATGTCATGTCATGTCA 58.806 43.478 25.46 13.92 43.70 3.58
736 1029 3.246936 CGGTCATCATGTCATGTCATGTC 59.753 47.826 25.46 16.47 43.70 3.06
737 1030 3.200483 CGGTCATCATGTCATGTCATGT 58.800 45.455 25.46 14.33 43.70 3.21
738 1031 2.546789 CCGGTCATCATGTCATGTCATG 59.453 50.000 22.23 22.23 44.36 3.07
742 1035 2.013563 GCACCGGTCATCATGTCATGT 61.014 52.381 2.59 0.00 0.00 3.21
744 1037 0.252761 TGCACCGGTCATCATGTCAT 59.747 50.000 2.59 0.00 0.00 3.06
747 1040 2.936919 ATATGCACCGGTCATCATGT 57.063 45.000 18.79 11.90 0.00 3.21
748 1041 2.485426 GGAATATGCACCGGTCATCATG 59.515 50.000 18.79 3.23 0.00 3.07
749 1042 2.783135 GGAATATGCACCGGTCATCAT 58.217 47.619 18.79 16.99 0.00 2.45
750 1043 1.540146 CGGAATATGCACCGGTCATCA 60.540 52.381 18.79 11.83 44.59 3.07
751 1044 1.148310 CGGAATATGCACCGGTCATC 58.852 55.000 18.79 6.89 44.59 2.92
752 1045 3.305709 CGGAATATGCACCGGTCAT 57.694 52.632 19.08 19.08 44.59 3.06
759 1052 1.940613 GAGGTGGAACGGAATATGCAC 59.059 52.381 0.00 0.00 38.12 4.57
760 1053 1.134220 GGAGGTGGAACGGAATATGCA 60.134 52.381 0.00 0.00 38.12 3.96
793 1086 2.034376 AGCTCTCGGTCGACCAGT 59.966 61.111 32.80 11.57 35.14 4.00
854 1236 4.848562 AAGGAAAACGGACTCAAATTCC 57.151 40.909 0.00 0.00 37.24 3.01
1266 1695 4.817909 AGGGAGGGGCGGGTTAGG 62.818 72.222 0.00 0.00 0.00 2.69
1267 1696 3.162154 GAGGGAGGGGCGGGTTAG 61.162 72.222 0.00 0.00 0.00 2.34
1318 1747 7.500141 ACAAGCAACCAGACTATTCAATTTTT 58.500 30.769 0.00 0.00 0.00 1.94
1366 1795 1.953686 ACGAACCAAACAGTTCCCATG 59.046 47.619 0.00 0.00 42.63 3.66
1448 1879 7.711339 CCTGGTAGATGATCTAGTAACCAAAAC 59.289 40.741 13.98 0.00 32.70 2.43
1528 1963 7.361799 GGACTACACCAATTTTCAGATGGTAAC 60.362 40.741 0.00 0.00 45.45 2.50
1529 1964 6.657541 GGACTACACCAATTTTCAGATGGTAA 59.342 38.462 0.00 0.00 45.45 2.85
1530 1965 6.177610 GGACTACACCAATTTTCAGATGGTA 58.822 40.000 0.00 0.00 45.45 3.25
1646 2081 3.863396 TTGTGTACGAAATTGACACGG 57.137 42.857 0.00 0.00 45.18 4.94
1658 2093 4.822036 TTGAATTGTCCCTTTGTGTACG 57.178 40.909 0.00 0.00 0.00 3.67
1664 2099 8.526147 ACTCAGATTATTTGAATTGTCCCTTTG 58.474 33.333 0.00 0.00 0.00 2.77
1936 2375 8.778059 ACTCAAACCCATCTAATCCATAAGTTA 58.222 33.333 0.00 0.00 0.00 2.24
1984 2423 2.353839 CAGCCAAGTTGTGCGTGC 60.354 61.111 1.45 0.00 0.00 5.34
2261 3081 8.641155 CAAATGTAGTCATTAAAATGCACTGTG 58.359 33.333 2.76 2.76 42.60 3.66
2329 3151 5.923204 ACACTAAGATCCAAAGGCTCTATG 58.077 41.667 0.00 0.00 27.20 2.23
2380 3202 2.424956 GGTCCTCTTCATTGCATCAACC 59.575 50.000 0.00 0.00 0.00 3.77
2542 3364 2.622942 TCTCAGAAAACCCATGTGCAAC 59.377 45.455 0.00 0.00 37.35 4.17
2661 3483 6.496571 AGTTCACGTGTAGTCATCTAATAGC 58.503 40.000 16.51 0.00 0.00 2.97
2721 3552 6.780522 ACTACAAACTTGGGTATGTTTTCCAT 59.219 34.615 0.00 0.00 33.42 3.41
2730 3561 6.497954 TGTACCACTACTACAAACTTGGGTAT 59.502 38.462 0.00 0.00 31.72 2.73
2919 3751 6.627395 AGAACATAAACAATGAACGGTTCA 57.373 33.333 24.32 24.32 45.01 3.18
2947 3779 4.074970 GGAACAGATGAACCTCAACACAT 58.925 43.478 0.00 0.00 0.00 3.21
2970 3802 8.658840 ACCACCACATTAGTAATTAACCAAAT 57.341 30.769 0.00 0.00 0.00 2.32
3035 3867 4.700213 ACCTCCGTTCCATAATTCTTGTTG 59.300 41.667 0.00 0.00 0.00 3.33
3048 3912 3.891049 TCTAACCTACTACCTCCGTTCC 58.109 50.000 0.00 0.00 0.00 3.62
3128 4008 6.456795 GGCAACTAGCTTTTATTTCTCCAT 57.543 37.500 0.00 0.00 44.79 3.41
3219 4099 4.217550 GCTTTACTGAAAATAGGTGCACCA 59.782 41.667 36.39 22.64 38.89 4.17
3273 4153 6.402550 GCAACTCATATCGACAACATGAACTT 60.403 38.462 0.00 0.00 0.00 2.66
3508 4420 2.443887 TGTAGTTCCGTAGCAACACC 57.556 50.000 0.00 0.00 24.93 4.16
3510 4422 6.225318 ACTATTTTGTAGTTCCGTAGCAACA 58.775 36.000 0.00 0.00 24.93 3.33
3694 4607 1.098050 ATCAAACCAGCAAGCGATCC 58.902 50.000 0.00 0.00 0.00 3.36
3696 4609 2.161855 TCAATCAAACCAGCAAGCGAT 58.838 42.857 0.00 0.00 0.00 4.58
3733 4646 2.770587 GAAGCCTCAAAGCGCACACG 62.771 60.000 11.47 0.00 44.07 4.49
3793 4707 4.324099 CCATCAGACTCCTCTGGTTTGATT 60.324 45.833 0.00 0.00 43.87 2.57
3794 4708 3.199508 CCATCAGACTCCTCTGGTTTGAT 59.800 47.826 0.00 0.00 43.87 2.57
3807 4721 4.271807 TCCATCTAGAACCCATCAGACT 57.728 45.455 0.00 0.00 0.00 3.24
3839 4753 0.046242 TCACTCCCCATTCCATCCCT 59.954 55.000 0.00 0.00 0.00 4.20
3872 4786 2.429985 CCTCATCCTAATCCCCCTTCCT 60.430 54.545 0.00 0.00 0.00 3.36
3880 4794 5.594777 TCCTAATCTCCCTCATCCTAATCC 58.405 45.833 0.00 0.00 0.00 3.01
3881 4795 6.099557 CCATCCTAATCTCCCTCATCCTAATC 59.900 46.154 0.00 0.00 0.00 1.75
3882 4796 5.969402 CCATCCTAATCTCCCTCATCCTAAT 59.031 44.000 0.00 0.00 0.00 1.73
3883 4797 5.077864 TCCATCCTAATCTCCCTCATCCTAA 59.922 44.000 0.00 0.00 0.00 2.69
3884 4798 4.612496 TCCATCCTAATCTCCCTCATCCTA 59.388 45.833 0.00 0.00 0.00 2.94
3885 4799 3.407540 TCCATCCTAATCTCCCTCATCCT 59.592 47.826 0.00 0.00 0.00 3.24
3900 4825 2.861317 AGTTCAATCCCCATTCCATCCT 59.139 45.455 0.00 0.00 0.00 3.24
3925 4850 2.829384 GGAGTTGGTGGTGGGAGCA 61.829 63.158 0.00 0.00 0.00 4.26
4033 4958 2.499197 TGTCGGCTGTGCTTTGAATAA 58.501 42.857 0.00 0.00 0.00 1.40
4035 4960 1.200716 CATGTCGGCTGTGCTTTGAAT 59.799 47.619 0.00 0.00 0.00 2.57
4049 4974 5.463392 CCTTCTGGTACATCAATACATGTCG 59.537 44.000 0.00 0.00 38.07 4.35
4067 4992 3.601443 AGTAAGCACTACAGCCTTCTG 57.399 47.619 0.00 0.00 45.71 3.02
4069 4994 3.926616 TGAAGTAAGCACTACAGCCTTC 58.073 45.455 0.00 0.00 33.48 3.46
4347 5272 3.002759 GCAACCGAATAATCTGCTCTTCC 59.997 47.826 0.00 0.00 0.00 3.46
4535 5620 1.180029 CAGGAAACAGAAGGCATGGG 58.820 55.000 0.00 0.00 0.00 4.00
4623 5766 7.532571 CAGCAGAAGACAATATTTGATTCACA 58.467 34.615 10.34 0.00 34.59 3.58
4794 5937 4.512944 CGGACTTCAGTGCATAGCAATAAT 59.487 41.667 0.00 0.00 41.47 1.28
4795 5938 3.871006 CGGACTTCAGTGCATAGCAATAA 59.129 43.478 0.00 0.00 41.47 1.40
4880 6023 2.599973 CACAGAAACAGTTGCACAAAGC 59.400 45.455 0.00 0.00 45.96 3.51
4910 6053 4.310022 TCGGGTCCCAAAATTATCAACT 57.690 40.909 9.12 0.00 0.00 3.16
4923 6066 0.760572 TTCGGGATTTATCGGGTCCC 59.239 55.000 0.00 0.00 46.63 4.46
4924 6067 1.870993 CGTTCGGGATTTATCGGGTCC 60.871 57.143 0.00 0.00 0.00 4.46
4925 6068 1.202452 ACGTTCGGGATTTATCGGGTC 60.202 52.381 0.00 0.00 0.00 4.46
4926 6069 0.826062 ACGTTCGGGATTTATCGGGT 59.174 50.000 0.00 0.00 0.00 5.28
4957 6100 0.387565 AAACGTTTGGGGTGACATGC 59.612 50.000 13.81 0.00 0.00 4.06
5072 6241 5.991933 TTGGATTTTAAGCATGGCAACTA 57.008 34.783 0.00 0.00 37.61 2.24
5177 6367 9.330063 TCATGCAACTCCTACAAGATTATAAAG 57.670 33.333 0.00 0.00 0.00 1.85
5198 6388 5.184671 AGAATTTTTCCTCTTCAGGTCATGC 59.815 40.000 0.00 0.00 41.28 4.06
5249 6439 7.850193 AGTCTAGCAGATCATTTTTCTCTTCT 58.150 34.615 0.00 0.00 0.00 2.85
5565 6762 3.075005 ATCGTCCTCACCCCCACG 61.075 66.667 0.00 0.00 0.00 4.94
5904 7106 3.314635 GCATTTTCATCCTCTTCGCTGAT 59.685 43.478 0.00 0.00 0.00 2.90
6143 7345 2.170397 CAGTATCCACCATGCTACCACA 59.830 50.000 0.00 0.00 0.00 4.17
6246 7448 2.028385 ACACGTCCAGGAACCTTGATAC 60.028 50.000 0.00 0.00 0.00 2.24
6278 7487 4.036518 AGAACCATCCATCTAGAGCTGTT 58.963 43.478 0.00 0.00 0.00 3.16
6340 7549 0.685097 GTGGCAGAAGGGAGTACACA 59.315 55.000 0.00 0.00 0.00 3.72
6341 7550 0.977395 AGTGGCAGAAGGGAGTACAC 59.023 55.000 0.00 0.00 0.00 2.90
6354 7563 2.236146 AGATACATCCGTTTGAGTGGCA 59.764 45.455 0.00 0.00 0.00 4.92
6355 7564 2.906354 AGATACATCCGTTTGAGTGGC 58.094 47.619 0.00 0.00 0.00 5.01
6356 7565 5.050091 GCATTAGATACATCCGTTTGAGTGG 60.050 44.000 0.00 0.00 0.00 4.00
6358 7567 5.755375 CAGCATTAGATACATCCGTTTGAGT 59.245 40.000 0.00 0.00 0.00 3.41
6359 7568 5.333645 GCAGCATTAGATACATCCGTTTGAG 60.334 44.000 0.00 0.00 0.00 3.02
6362 7571 3.815401 GGCAGCATTAGATACATCCGTTT 59.185 43.478 0.00 0.00 0.00 3.60
6363 7572 3.071602 AGGCAGCATTAGATACATCCGTT 59.928 43.478 0.00 0.00 0.00 4.44
6366 7575 6.234177 ACTAAAGGCAGCATTAGATACATCC 58.766 40.000 19.02 0.00 34.11 3.51
6372 7581 9.664332 CAAGATATACTAAAGGCAGCATTAGAT 57.336 33.333 19.02 12.26 34.11 1.98
6373 7582 8.651389 ACAAGATATACTAAAGGCAGCATTAGA 58.349 33.333 19.02 7.55 34.11 2.10
6374 7583 8.839310 ACAAGATATACTAAAGGCAGCATTAG 57.161 34.615 13.14 13.14 35.67 1.73
6375 7584 9.706691 GTACAAGATATACTAAAGGCAGCATTA 57.293 33.333 0.00 0.00 0.00 1.90
6376 7585 8.432805 AGTACAAGATATACTAAAGGCAGCATT 58.567 33.333 0.00 0.00 30.94 3.56
6377 7586 7.967908 AGTACAAGATATACTAAAGGCAGCAT 58.032 34.615 0.00 0.00 30.94 3.79
6378 7587 7.361457 AGTACAAGATATACTAAAGGCAGCA 57.639 36.000 0.00 0.00 30.94 4.41
6379 7588 6.869388 GGAGTACAAGATATACTAAAGGCAGC 59.131 42.308 0.00 0.00 32.93 5.25
6380 7589 7.233757 AGGGAGTACAAGATATACTAAAGGCAG 59.766 40.741 0.00 0.00 32.93 4.85
6381 7590 7.073854 AGGGAGTACAAGATATACTAAAGGCA 58.926 38.462 0.00 0.00 32.93 4.75
6382 7591 7.541916 AGGGAGTACAAGATATACTAAAGGC 57.458 40.000 0.00 0.00 32.93 4.35
6383 7592 9.369672 AGAAGGGAGTACAAGATATACTAAAGG 57.630 37.037 0.00 0.00 32.93 3.11
6385 7594 8.639761 GCAGAAGGGAGTACAAGATATACTAAA 58.360 37.037 0.00 0.00 32.93 1.85
6386 7595 7.232941 GGCAGAAGGGAGTACAAGATATACTAA 59.767 40.741 0.00 0.00 32.93 2.24
6387 7596 6.720288 GGCAGAAGGGAGTACAAGATATACTA 59.280 42.308 0.00 0.00 32.93 1.82
6388 7597 5.540719 GGCAGAAGGGAGTACAAGATATACT 59.459 44.000 0.00 0.00 35.54 2.12
6389 7598 5.304614 TGGCAGAAGGGAGTACAAGATATAC 59.695 44.000 0.00 0.00 0.00 1.47
6390 7599 5.304614 GTGGCAGAAGGGAGTACAAGATATA 59.695 44.000 0.00 0.00 0.00 0.86
6391 7600 4.101741 GTGGCAGAAGGGAGTACAAGATAT 59.898 45.833 0.00 0.00 0.00 1.63
6392 7601 3.451178 GTGGCAGAAGGGAGTACAAGATA 59.549 47.826 0.00 0.00 0.00 1.98
6393 7602 2.237392 GTGGCAGAAGGGAGTACAAGAT 59.763 50.000 0.00 0.00 0.00 2.40
6394 7603 1.623811 GTGGCAGAAGGGAGTACAAGA 59.376 52.381 0.00 0.00 0.00 3.02
6395 7604 1.625818 AGTGGCAGAAGGGAGTACAAG 59.374 52.381 0.00 0.00 0.00 3.16
6396 7605 1.729586 AGTGGCAGAAGGGAGTACAA 58.270 50.000 0.00 0.00 0.00 2.41
6397 7606 1.729586 AAGTGGCAGAAGGGAGTACA 58.270 50.000 0.00 0.00 0.00 2.90
6398 7607 3.975168 TTAAGTGGCAGAAGGGAGTAC 57.025 47.619 0.00 0.00 0.00 2.73
6399 7608 3.306502 CGTTTAAGTGGCAGAAGGGAGTA 60.307 47.826 0.00 0.00 0.00 2.59
6400 7609 2.550208 CGTTTAAGTGGCAGAAGGGAGT 60.550 50.000 0.00 0.00 0.00 3.85
6401 7610 2.076863 CGTTTAAGTGGCAGAAGGGAG 58.923 52.381 0.00 0.00 0.00 4.30
6402 7611 1.271163 CCGTTTAAGTGGCAGAAGGGA 60.271 52.381 0.00 0.00 30.67 4.20
6403 7612 1.165270 CCGTTTAAGTGGCAGAAGGG 58.835 55.000 0.00 0.00 0.00 3.95
6404 7613 2.178912 TCCGTTTAAGTGGCAGAAGG 57.821 50.000 0.00 0.00 0.00 3.46
6405 7614 3.074412 ACATCCGTTTAAGTGGCAGAAG 58.926 45.455 0.00 0.00 0.00 2.85
6406 7615 3.134574 ACATCCGTTTAAGTGGCAGAA 57.865 42.857 0.00 0.00 0.00 3.02
6407 7616 2.851263 ACATCCGTTTAAGTGGCAGA 57.149 45.000 0.00 0.00 0.00 4.26
6408 7617 4.442706 AGATACATCCGTTTAAGTGGCAG 58.557 43.478 0.00 0.00 0.00 4.85
6416 7625 5.503662 TCAGCGTTAGATACATCCGTTTA 57.496 39.130 0.00 0.00 0.00 2.01
6420 7629 4.109766 TGTTTCAGCGTTAGATACATCCG 58.890 43.478 0.00 0.00 0.00 4.18
6453 7662 7.939782 TCTGTTCAAGCAAATTCAAACAGATA 58.060 30.769 10.71 0.00 41.42 1.98
6466 7675 5.733676 TGCTAGATACATCTGTTCAAGCAA 58.266 37.500 9.96 0.00 39.32 3.91
6471 7744 8.969260 ATTTCAATGCTAGATACATCTGTTCA 57.031 30.769 1.88 0.00 37.76 3.18
6511 7784 8.094548 CCTCCGTTCCATATTCTGTTAATATGA 58.905 37.037 15.84 3.76 41.03 2.15
6515 7788 5.368523 TCCCTCCGTTCCATATTCTGTTAAT 59.631 40.000 0.00 0.00 0.00 1.40
6517 7790 4.291792 TCCCTCCGTTCCATATTCTGTTA 58.708 43.478 0.00 0.00 0.00 2.41
6534 7807 7.393216 AGCAGATTCAAACAGATATATCCCTC 58.607 38.462 9.18 0.00 0.00 4.30
6535 7808 7.327064 AGCAGATTCAAACAGATATATCCCT 57.673 36.000 9.18 0.00 0.00 4.20
6536 7809 6.312426 CGAGCAGATTCAAACAGATATATCCC 59.688 42.308 9.18 0.00 0.00 3.85
6537 7810 7.093354 TCGAGCAGATTCAAACAGATATATCC 58.907 38.462 9.18 0.00 0.00 2.59
6538 7811 8.431593 GTTCGAGCAGATTCAAACAGATATATC 58.568 37.037 4.42 4.42 0.00 1.63
6539 7812 7.928167 TGTTCGAGCAGATTCAAACAGATATAT 59.072 33.333 0.00 0.00 0.00 0.86
6540 7813 7.264947 TGTTCGAGCAGATTCAAACAGATATA 58.735 34.615 0.00 0.00 0.00 0.86
6541 7814 6.108687 TGTTCGAGCAGATTCAAACAGATAT 58.891 36.000 0.00 0.00 0.00 1.63
6542 7815 5.478407 TGTTCGAGCAGATTCAAACAGATA 58.522 37.500 0.00 0.00 0.00 1.98
6543 7816 4.318332 TGTTCGAGCAGATTCAAACAGAT 58.682 39.130 0.00 0.00 0.00 2.90
6544 7817 3.727726 TGTTCGAGCAGATTCAAACAGA 58.272 40.909 0.00 0.00 0.00 3.41
6545 7818 3.742882 TCTGTTCGAGCAGATTCAAACAG 59.257 43.478 25.80 13.16 42.98 3.16
6546 7819 3.727726 TCTGTTCGAGCAGATTCAAACA 58.272 40.909 25.80 3.52 40.23 2.83
6555 7828 3.443037 CTCCTTACATCTGTTCGAGCAG 58.557 50.000 21.93 21.93 37.81 4.24
6556 7829 2.166459 CCTCCTTACATCTGTTCGAGCA 59.834 50.000 0.88 0.88 0.00 4.26
6557 7830 2.482142 CCCTCCTTACATCTGTTCGAGC 60.482 54.545 0.00 0.00 0.00 5.03
6558 7831 3.024547 TCCCTCCTTACATCTGTTCGAG 58.975 50.000 0.00 0.00 0.00 4.04
6559 7832 3.095912 TCCCTCCTTACATCTGTTCGA 57.904 47.619 0.00 0.00 0.00 3.71
6560 7833 5.730296 ATATCCCTCCTTACATCTGTTCG 57.270 43.478 0.00 0.00 0.00 3.95
6561 7834 8.474025 CAGATATATCCCTCCTTACATCTGTTC 58.526 40.741 9.18 0.00 35.53 3.18
6562 7835 7.958583 ACAGATATATCCCTCCTTACATCTGTT 59.041 37.037 9.18 0.00 45.47 3.16
6563 7836 7.483018 ACAGATATATCCCTCCTTACATCTGT 58.517 38.462 9.18 7.82 43.88 3.41
6564 7837 7.969690 ACAGATATATCCCTCCTTACATCTG 57.030 40.000 9.18 0.00 42.34 2.90
6565 7838 8.820831 CAAACAGATATATCCCTCCTTACATCT 58.179 37.037 9.18 0.00 0.00 2.90
6566 7839 8.816894 TCAAACAGATATATCCCTCCTTACATC 58.183 37.037 9.18 0.00 0.00 3.06
6567 7840 8.742125 TCAAACAGATATATCCCTCCTTACAT 57.258 34.615 9.18 0.00 0.00 2.29
6568 7841 8.561536 TTCAAACAGATATATCCCTCCTTACA 57.438 34.615 9.18 0.00 0.00 2.41
6569 7842 9.660180 GATTCAAACAGATATATCCCTCCTTAC 57.340 37.037 9.18 0.00 0.00 2.34
6570 7843 9.621239 AGATTCAAACAGATATATCCCTCCTTA 57.379 33.333 9.18 0.00 0.00 2.69
6571 7844 8.381636 CAGATTCAAACAGATATATCCCTCCTT 58.618 37.037 9.18 0.00 0.00 3.36
6572 7845 7.528543 GCAGATTCAAACAGATATATCCCTCCT 60.529 40.741 9.18 0.00 0.00 3.69
6573 7846 6.597280 GCAGATTCAAACAGATATATCCCTCC 59.403 42.308 9.18 0.00 0.00 4.30
6574 7847 7.393216 AGCAGATTCAAACAGATATATCCCTC 58.607 38.462 9.18 0.00 0.00 4.30
6575 7848 7.327064 AGCAGATTCAAACAGATATATCCCT 57.673 36.000 9.18 0.00 0.00 4.20
6576 7849 6.312426 CGAGCAGATTCAAACAGATATATCCC 59.688 42.308 9.18 0.00 0.00 3.85
6577 7850 7.093354 TCGAGCAGATTCAAACAGATATATCC 58.907 38.462 9.18 0.00 0.00 2.59
6578 7851 8.431593 GTTCGAGCAGATTCAAACAGATATATC 58.568 37.037 4.42 4.42 0.00 1.63
6579 7852 7.928167 TGTTCGAGCAGATTCAAACAGATATAT 59.072 33.333 0.00 0.00 0.00 0.86
6580 7853 7.264947 TGTTCGAGCAGATTCAAACAGATATA 58.735 34.615 0.00 0.00 0.00 0.86
6581 7854 6.108687 TGTTCGAGCAGATTCAAACAGATAT 58.891 36.000 0.00 0.00 0.00 1.63
6582 7855 5.478407 TGTTCGAGCAGATTCAAACAGATA 58.522 37.500 0.00 0.00 0.00 1.98
6583 7856 4.318332 TGTTCGAGCAGATTCAAACAGAT 58.682 39.130 0.00 0.00 0.00 2.90
6584 7857 3.727726 TGTTCGAGCAGATTCAAACAGA 58.272 40.909 0.00 0.00 0.00 3.41
6585 7858 3.742882 TCTGTTCGAGCAGATTCAAACAG 59.257 43.478 25.80 13.16 42.98 3.16
6586 7859 3.727726 TCTGTTCGAGCAGATTCAAACA 58.272 40.909 25.80 3.52 40.23 2.83
6595 7868 3.510388 TCCTTACATCTGTTCGAGCAG 57.490 47.619 21.93 21.93 37.81 4.24
6596 7869 3.258372 ACTTCCTTACATCTGTTCGAGCA 59.742 43.478 0.88 0.88 0.00 4.26
6597 7870 3.851098 ACTTCCTTACATCTGTTCGAGC 58.149 45.455 0.00 0.00 0.00 5.03
6598 7871 6.438259 TCTACTTCCTTACATCTGTTCGAG 57.562 41.667 0.00 0.00 0.00 4.04
6599 7872 7.774157 ACTATCTACTTCCTTACATCTGTTCGA 59.226 37.037 0.00 0.00 0.00 3.71
6600 7873 7.932335 ACTATCTACTTCCTTACATCTGTTCG 58.068 38.462 0.00 0.00 0.00 3.95
6603 7876 8.838365 CGTAACTATCTACTTCCTTACATCTGT 58.162 37.037 0.00 0.00 0.00 3.41
6604 7877 8.838365 ACGTAACTATCTACTTCCTTACATCTG 58.162 37.037 0.00 0.00 0.00 2.90
6605 7878 8.977267 ACGTAACTATCTACTTCCTTACATCT 57.023 34.615 0.00 0.00 0.00 2.90
6608 7881 9.836864 TCATACGTAACTATCTACTTCCTTACA 57.163 33.333 0.00 0.00 0.00 2.41
6670 7961 5.810095 ACAAGAATTTTAGGACAGAGGGAG 58.190 41.667 0.00 0.00 0.00 4.30
6671 7962 5.548056 AGACAAGAATTTTAGGACAGAGGGA 59.452 40.000 0.00 0.00 0.00 4.20
6672 7963 5.810095 AGACAAGAATTTTAGGACAGAGGG 58.190 41.667 0.00 0.00 0.00 4.30
6673 7964 8.314751 TCTAAGACAAGAATTTTAGGACAGAGG 58.685 37.037 0.00 0.00 0.00 3.69
6674 7965 9.883142 ATCTAAGACAAGAATTTTAGGACAGAG 57.117 33.333 0.00 0.00 0.00 3.35
6808 8099 9.765795 CTCCGTCCTAAAATTATTGTCTTAGAT 57.234 33.333 0.00 0.00 0.00 1.98
6809 8100 8.202137 CCTCCGTCCTAAAATTATTGTCTTAGA 58.798 37.037 0.00 0.00 0.00 2.10
6810 8101 7.441458 CCCTCCGTCCTAAAATTATTGTCTTAG 59.559 40.741 0.00 0.00 0.00 2.18
6811 8102 7.126115 TCCCTCCGTCCTAAAATTATTGTCTTA 59.874 37.037 0.00 0.00 0.00 2.10
6812 8103 6.069847 TCCCTCCGTCCTAAAATTATTGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
6813 8104 5.427481 TCCCTCCGTCCTAAAATTATTGTCT 59.573 40.000 0.00 0.00 0.00 3.41
6814 8105 5.677567 TCCCTCCGTCCTAAAATTATTGTC 58.322 41.667 0.00 0.00 0.00 3.18
6815 8106 5.191124 ACTCCCTCCGTCCTAAAATTATTGT 59.809 40.000 0.00 0.00 0.00 2.71
6816 8107 5.681639 ACTCCCTCCGTCCTAAAATTATTG 58.318 41.667 0.00 0.00 0.00 1.90
6817 8108 5.970501 ACTCCCTCCGTCCTAAAATTATT 57.029 39.130 0.00 0.00 0.00 1.40
6818 8109 7.017531 AGATACTCCCTCCGTCCTAAAATTAT 58.982 38.462 0.00 0.00 0.00 1.28
6819 8110 6.267014 CAGATACTCCCTCCGTCCTAAAATTA 59.733 42.308 0.00 0.00 0.00 1.40
6820 8111 5.070580 CAGATACTCCCTCCGTCCTAAAATT 59.929 44.000 0.00 0.00 0.00 1.82
6821 8112 4.589374 CAGATACTCCCTCCGTCCTAAAAT 59.411 45.833 0.00 0.00 0.00 1.82
6822 8113 3.958798 CAGATACTCCCTCCGTCCTAAAA 59.041 47.826 0.00 0.00 0.00 1.52
6823 8114 3.203710 TCAGATACTCCCTCCGTCCTAAA 59.796 47.826 0.00 0.00 0.00 1.85
6824 8115 2.781757 TCAGATACTCCCTCCGTCCTAA 59.218 50.000 0.00 0.00 0.00 2.69
6825 8116 2.415624 TCAGATACTCCCTCCGTCCTA 58.584 52.381 0.00 0.00 0.00 2.94
6826 8117 1.223501 TCAGATACTCCCTCCGTCCT 58.776 55.000 0.00 0.00 0.00 3.85
6827 8118 2.296073 ATCAGATACTCCCTCCGTCC 57.704 55.000 0.00 0.00 0.00 4.79
6828 8119 3.223435 TGAATCAGATACTCCCTCCGTC 58.777 50.000 0.00 0.00 0.00 4.79
6829 8120 3.314307 TGAATCAGATACTCCCTCCGT 57.686 47.619 0.00 0.00 0.00 4.69
6830 8121 4.767409 TGTATGAATCAGATACTCCCTCCG 59.233 45.833 0.00 0.00 0.00 4.63
6831 8122 6.667414 AGATGTATGAATCAGATACTCCCTCC 59.333 42.308 0.00 0.00 0.00 4.30
6832 8123 7.716799 AGATGTATGAATCAGATACTCCCTC 57.283 40.000 0.00 0.00 0.00 4.30
6833 8124 7.617723 GGTAGATGTATGAATCAGATACTCCCT 59.382 40.741 0.00 0.00 0.00 4.20
6834 8125 7.397476 TGGTAGATGTATGAATCAGATACTCCC 59.603 40.741 0.00 0.00 0.00 4.30
6835 8126 8.354711 TGGTAGATGTATGAATCAGATACTCC 57.645 38.462 0.00 0.00 0.00 3.85
6840 8131 9.499479 GTGAAATGGTAGATGTATGAATCAGAT 57.501 33.333 0.00 0.00 0.00 2.90
6841 8132 8.485392 TGTGAAATGGTAGATGTATGAATCAGA 58.515 33.333 0.00 0.00 0.00 3.27
6842 8133 8.667076 TGTGAAATGGTAGATGTATGAATCAG 57.333 34.615 0.00 0.00 0.00 2.90
6843 8134 9.631257 ATTGTGAAATGGTAGATGTATGAATCA 57.369 29.630 0.00 0.00 0.00 2.57
6948 8239 6.524101 TTCTACTTTTGCAACTTTTCCACT 57.476 33.333 0.00 0.00 0.00 4.00
6952 8243 6.885735 TTGCTTCTACTTTTGCAACTTTTC 57.114 33.333 0.00 0.00 39.98 2.29
6958 8249 6.393990 TGAGTTTTTGCTTCTACTTTTGCAA 58.606 32.000 0.00 0.00 42.60 4.08
6967 8258 5.802956 CCGTTTGTTTGAGTTTTTGCTTCTA 59.197 36.000 0.00 0.00 0.00 2.10
6978 8269 0.396556 AAGGCCCCGTTTGTTTGAGT 60.397 50.000 0.00 0.00 0.00 3.41
6989 8280 1.118356 AGAGATGCTCTAAGGCCCCG 61.118 60.000 0.00 0.00 39.28 5.73
6990 8281 1.899142 CTAGAGATGCTCTAAGGCCCC 59.101 57.143 0.00 0.00 41.74 5.80
7013 8304 2.231964 GGTCGGGGCATTATACGTGATA 59.768 50.000 0.00 0.00 0.00 2.15
7015 8306 0.390124 GGTCGGGGCATTATACGTGA 59.610 55.000 0.00 0.00 0.00 4.35
7016 8307 0.601841 GGGTCGGGGCATTATACGTG 60.602 60.000 0.00 0.00 0.00 4.49
7017 8308 1.750297 GGGTCGGGGCATTATACGT 59.250 57.895 0.00 0.00 0.00 3.57
7026 8317 2.047443 TTATTTTGCGGGTCGGGGC 61.047 57.895 0.00 0.00 0.00 5.80
7076 8367 4.550831 GCATTTACATTGTCTGATCGGACG 60.551 45.833 25.83 16.06 38.91 4.79
7078 8369 3.555547 CGCATTTACATTGTCTGATCGGA 59.444 43.478 0.00 0.00 0.00 4.55
7081 8372 3.313526 AGGCGCATTTACATTGTCTGATC 59.686 43.478 10.83 0.00 0.00 2.92
7085 8376 2.420022 GTGAGGCGCATTTACATTGTCT 59.580 45.455 10.83 0.00 0.00 3.41
7097 8388 1.227883 TTTTTACGGGTGAGGCGCA 60.228 52.632 10.83 0.00 0.00 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.