Multiple sequence alignment - TraesCS4A01G236400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G236400 chr4A 100.000 2829 0 0 1913 4741 545116457 545113629 0.000000e+00 5225
1 TraesCS4A01G236400 chr4A 100.000 1522 0 0 1 1522 545118369 545116848 0.000000e+00 2811
2 TraesCS4A01G236400 chr4A 81.862 419 56 17 986 1401 639209103 639208702 7.600000e-88 335
3 TraesCS4A01G236400 chr4A 76.550 516 87 25 3267 3767 639206751 639206255 7.880000e-63 252
4 TraesCS4A01G236400 chr4A 86.275 102 5 5 2991 3089 639207312 639207217 8.390000e-18 102
5 TraesCS4A01G236400 chr4B 92.243 2836 159 22 1915 4729 75738526 75741321 0.000000e+00 3962
6 TraesCS4A01G236400 chr4B 95.749 447 19 0 1066 1512 75737996 75738442 0.000000e+00 721
7 TraesCS4A01G236400 chr4B 82.536 418 46 22 462 852 75736172 75736589 4.540000e-90 342
8 TraesCS4A01G236400 chr4B 92.742 124 3 6 951 1069 75736587 75736709 1.750000e-39 174
9 TraesCS4A01G236400 chr4D 93.726 2120 100 13 1975 4081 51554726 51556825 0.000000e+00 3147
10 TraesCS4A01G236400 chr4D 95.000 580 22 6 938 1512 51553972 51554549 0.000000e+00 904
11 TraesCS4A01G236400 chr4D 81.075 930 106 33 1 890 51551047 51551946 0.000000e+00 678
12 TraesCS4A01G236400 chr4D 84.496 645 41 17 4110 4729 51556820 51557430 2.460000e-162 582
13 TraesCS4A01G236400 chr5B 82.045 440 55 19 986 1410 672617002 672617432 2.100000e-93 353
14 TraesCS4A01G236400 chr5B 90.110 91 8 1 611 700 648139038 648139128 3.000000e-22 117
15 TraesCS4A01G236400 chr5B 83.898 118 9 6 2975 3089 672618884 672618994 2.330000e-18 104
16 TraesCS4A01G236400 chr5D 82.093 430 54 17 986 1401 532552846 532553266 3.510000e-91 346
17 TraesCS4A01G236400 chr5D 87.037 108 10 4 610 715 515406450 515406555 8.330000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G236400 chr4A 545113629 545118369 4740 True 4018.000000 5225 100.000000 1 4741 2 chr4A.!!$R1 4740
1 TraesCS4A01G236400 chr4A 639206255 639209103 2848 True 229.666667 335 81.562333 986 3767 3 chr4A.!!$R2 2781
2 TraesCS4A01G236400 chr4B 75736172 75741321 5149 False 1299.750000 3962 90.817500 462 4729 4 chr4B.!!$F1 4267
3 TraesCS4A01G236400 chr4D 51551047 51557430 6383 False 1327.750000 3147 88.574250 1 4729 4 chr4D.!!$F1 4728
4 TraesCS4A01G236400 chr5B 672617002 672618994 1992 False 228.500000 353 82.971500 986 3089 2 chr5B.!!$F2 2103

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
911 1095 0.393077 CCTCTATACTGTTGGCCCGG 59.607 60.000 0.00 0.00 0.00 5.73 F
994 3148 1.140312 TCCCCTGTTTGCAACTCTCT 58.860 50.000 0.00 0.00 0.00 3.10 F
2171 5869 1.345741 TGGCCTGACTTCTCAAGTGAG 59.654 52.381 3.32 1.65 43.03 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2243 5941 0.533032 ACCCACCAAACAAAACCACG 59.467 50.000 0.00 0.00 0.00 4.94 R
2672 6401 1.279496 TCCTTGACCTGATCACTGGG 58.721 55.000 6.01 2.18 36.92 4.45 R
3995 8178 1.702401 TGTCCTATGCCACACTGGAAA 59.298 47.619 0.00 0.00 40.96 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 122 0.974383 AATTCTGTCGGAGTTCGGGT 59.026 50.000 0.00 0.00 39.77 5.28
126 127 1.189524 TGTCGGAGTTCGGGTCCAAT 61.190 55.000 0.00 0.00 39.77 3.16
128 129 1.449601 CGGAGTTCGGGTCCAATGG 60.450 63.158 0.00 0.00 33.14 3.16
146 147 2.040544 GCCTCCACCAACACCATCG 61.041 63.158 0.00 0.00 0.00 3.84
149 150 1.604604 CTCCACCAACACCATCGTTT 58.395 50.000 0.00 0.00 0.00 3.60
164 165 5.288543 CATCGTTTGGAAGAAGAAAGGAG 57.711 43.478 0.00 0.00 31.53 3.69
165 166 4.682778 TCGTTTGGAAGAAGAAAGGAGA 57.317 40.909 0.00 0.00 0.00 3.71
167 168 5.433526 TCGTTTGGAAGAAGAAAGGAGAAA 58.566 37.500 0.00 0.00 0.00 2.52
168 169 6.062095 TCGTTTGGAAGAAGAAAGGAGAAAT 58.938 36.000 0.00 0.00 0.00 2.17
170 171 5.712152 TTGGAAGAAGAAAGGAGAAATGC 57.288 39.130 0.00 0.00 0.00 3.56
171 172 4.728772 TGGAAGAAGAAAGGAGAAATGCA 58.271 39.130 0.00 0.00 0.00 3.96
172 173 5.327732 TGGAAGAAGAAAGGAGAAATGCAT 58.672 37.500 0.00 0.00 0.00 3.96
174 175 7.121382 TGGAAGAAGAAAGGAGAAATGCATAT 58.879 34.615 0.00 0.00 0.00 1.78
176 177 6.956202 AGAAGAAAGGAGAAATGCATATGG 57.044 37.500 0.00 0.00 0.00 2.74
178 179 6.894103 AGAAGAAAGGAGAAATGCATATGGTT 59.106 34.615 0.00 0.00 0.00 3.67
179 180 6.705863 AGAAAGGAGAAATGCATATGGTTC 57.294 37.500 0.00 0.00 0.00 3.62
180 181 5.595952 AGAAAGGAGAAATGCATATGGTTCC 59.404 40.000 0.00 3.65 0.00 3.62
181 182 3.480470 AGGAGAAATGCATATGGTTCCG 58.520 45.455 0.00 0.00 0.00 4.30
182 183 2.030805 GGAGAAATGCATATGGTTCCGC 60.031 50.000 0.00 0.00 0.00 5.54
188 196 0.603975 GCATATGGTTCCGCCTCCTC 60.604 60.000 4.56 0.00 38.35 3.71
195 203 1.078528 TTCCGCCTCCTCTTCCTCA 59.921 57.895 0.00 0.00 0.00 3.86
203 211 2.168313 CCTCCTCTTCCTCAAGCTCTTC 59.832 54.545 0.00 0.00 0.00 2.87
204 212 3.099141 CTCCTCTTCCTCAAGCTCTTCT 58.901 50.000 0.00 0.00 0.00 2.85
217 225 4.623932 AGCTCTTCTACACCAACATCAA 57.376 40.909 0.00 0.00 0.00 2.57
226 234 1.887854 CACCAACATCAACATCAGGCA 59.112 47.619 0.00 0.00 0.00 4.75
228 236 2.494471 ACCAACATCAACATCAGGCATG 59.506 45.455 0.00 0.00 38.64 4.06
235 255 0.706433 AACATCAGGCATGGGGAGTT 59.294 50.000 0.00 0.00 36.72 3.01
253 273 2.490903 AGTTAGCGACGTACCTCAACAT 59.509 45.455 0.00 0.00 0.00 2.71
269 289 3.436704 TCAACATCGACAAAATCAGCTCC 59.563 43.478 0.00 0.00 0.00 4.70
273 293 1.347707 TCGACAAAATCAGCTCCCTGT 59.652 47.619 0.00 0.00 40.09 4.00
276 296 2.746362 GACAAAATCAGCTCCCTGTCAG 59.254 50.000 0.00 0.00 40.09 3.51
282 302 0.617413 CAGCTCCCTGTCAGGAACAT 59.383 55.000 21.23 0.63 37.67 2.71
293 313 5.416639 CCTGTCAGGAACATGATGATGAAAA 59.583 40.000 14.26 0.00 37.67 2.29
295 315 5.183713 TGTCAGGAACATGATGATGAAAACC 59.816 40.000 0.00 0.00 33.36 3.27
307 327 8.352137 TGATGATGAAAACCTCAACATATTGT 57.648 30.769 0.00 0.00 44.96 2.71
310 330 7.761409 TGATGAAAACCTCAACATATTGTAGC 58.239 34.615 0.00 0.00 37.67 3.58
334 354 3.057315 GTGGCATGAACACAAGCTTACAT 60.057 43.478 13.97 0.00 38.67 2.29
337 357 5.418524 TGGCATGAACACAAGCTTACATATT 59.581 36.000 0.00 0.00 0.00 1.28
352 372 6.017440 GCTTACATATTCGGTGCTTTCCATAA 60.017 38.462 0.00 0.00 0.00 1.90
353 373 5.751243 ACATATTCGGTGCTTTCCATAAC 57.249 39.130 0.00 0.00 0.00 1.89
354 374 4.272504 ACATATTCGGTGCTTTCCATAACG 59.727 41.667 0.00 0.00 0.00 3.18
369 407 0.742505 TAACGGTACCCATCTCAGCG 59.257 55.000 6.25 0.00 38.99 5.18
407 445 4.019860 TGCTTTCAGTCTAGCAGGAAGAAT 60.020 41.667 0.00 0.00 42.12 2.40
414 452 7.268586 TCAGTCTAGCAGGAAGAATAATTGAC 58.731 38.462 0.00 0.00 0.00 3.18
415 453 7.044181 CAGTCTAGCAGGAAGAATAATTGACA 58.956 38.462 0.00 0.00 0.00 3.58
440 478 5.127845 AGAGAAGAACAAGTCTCACAAGTGA 59.872 40.000 2.56 2.56 42.34 3.41
441 479 5.923204 AGAAGAACAAGTCTCACAAGTGAT 58.077 37.500 3.01 0.00 39.13 3.06
457 495 8.725190 TCACAAGTGATATATGGTGAGGACACA 61.725 40.741 0.00 0.00 40.49 3.72
480 561 8.078596 CACATCTCTATGAACAACATCGATCTA 58.921 37.037 0.00 0.00 40.07 1.98
491 626 5.594725 ACAACATCGATCTACTATCCACACT 59.405 40.000 0.00 0.00 0.00 3.55
523 658 7.139300 GTTTATCTAGACGATGAACAACGAG 57.861 40.000 11.01 0.00 44.00 4.18
524 659 6.673154 TTATCTAGACGATGAACAACGAGA 57.327 37.500 11.01 4.60 33.48 4.04
525 660 5.562506 ATCTAGACGATGAACAACGAGAA 57.437 39.130 11.01 0.00 0.00 2.87
526 661 4.971008 TCTAGACGATGAACAACGAGAAG 58.029 43.478 11.01 5.35 0.00 2.85
527 662 3.917329 AGACGATGAACAACGAGAAGA 57.083 42.857 11.01 0.00 0.00 2.87
528 663 4.238761 AGACGATGAACAACGAGAAGAA 57.761 40.909 11.01 0.00 0.00 2.52
529 664 4.810790 AGACGATGAACAACGAGAAGAAT 58.189 39.130 11.01 0.00 0.00 2.40
530 665 5.950883 AGACGATGAACAACGAGAAGAATA 58.049 37.500 11.01 0.00 0.00 1.75
531 666 6.030849 AGACGATGAACAACGAGAAGAATAG 58.969 40.000 11.01 0.00 0.00 1.73
532 667 5.710984 ACGATGAACAACGAGAAGAATAGT 58.289 37.500 11.01 0.00 0.00 2.12
533 668 6.157211 ACGATGAACAACGAGAAGAATAGTT 58.843 36.000 11.01 0.00 0.00 2.24
534 669 6.089551 ACGATGAACAACGAGAAGAATAGTTG 59.910 38.462 11.01 5.74 46.51 3.16
543 678 9.746711 CAACGAGAAGAATAGTTGTAATCTTTG 57.253 33.333 0.00 0.00 39.11 2.77
544 679 9.706691 AACGAGAAGAATAGTTGTAATCTTTGA 57.293 29.630 0.00 0.00 29.89 2.69
545 680 9.706691 ACGAGAAGAATAGTTGTAATCTTTGAA 57.293 29.630 0.00 0.00 29.89 2.69
589 724 1.519408 TTCCGGTCAAGTAGCTTTGC 58.481 50.000 0.00 0.00 0.00 3.68
606 741 2.579410 TGCACTCCTTTTCCTTACCC 57.421 50.000 0.00 0.00 0.00 3.69
654 789 7.441836 TGAGACATCTACTAACAAAGCTCAAA 58.558 34.615 0.00 0.00 0.00 2.69
810 981 2.486592 CCCAAAAGGCTGTAAACCTACG 59.513 50.000 0.00 0.00 36.14 3.51
886 1057 3.203716 GGTCCTCTAAAAATGGCCTACG 58.796 50.000 3.32 0.00 0.00 3.51
900 1084 2.094649 GGCCTACGTGATGCCTCTATAC 60.095 54.545 15.14 0.00 42.01 1.47
907 1091 3.134458 GTGATGCCTCTATACTGTTGGC 58.866 50.000 0.00 0.00 43.49 4.52
911 1095 0.393077 CCTCTATACTGTTGGCCCGG 59.607 60.000 0.00 0.00 0.00 5.73
942 3091 1.332686 GCCGGGTCGTCCATAAAAATC 59.667 52.381 2.18 0.00 34.36 2.17
958 3107 7.275560 CCATAAAAATCATTCGTTTCTCCCAAC 59.724 37.037 0.00 0.00 0.00 3.77
959 3108 6.405278 AAAAATCATTCGTTTCTCCCAACT 57.595 33.333 0.00 0.00 0.00 3.16
960 3109 5.629079 AAATCATTCGTTTCTCCCAACTC 57.371 39.130 0.00 0.00 0.00 3.01
994 3148 1.140312 TCCCCTGTTTGCAACTCTCT 58.860 50.000 0.00 0.00 0.00 3.10
1445 4926 2.504274 CCCTGCGCGATAACCCCTA 61.504 63.158 12.10 0.00 0.00 3.53
1463 4947 6.911308 ACCCCTATTAAGAATTGTGCTGTAT 58.089 36.000 0.00 0.00 0.00 2.29
1474 4958 4.383850 TTGTGCTGTATTGCAACAAGTT 57.616 36.364 0.00 0.00 45.12 2.66
1491 4975 4.702131 ACAAGTTATCTGAAGAATGGTGCC 59.298 41.667 0.00 0.00 0.00 5.01
1521 5048 3.315191 GGTCTGCATACTTTTGTGTGTGT 59.685 43.478 1.95 0.00 42.50 3.72
1959 5486 5.277974 CGTAGTTGGAAAATGCAGATATGGG 60.278 44.000 0.00 0.00 0.00 4.00
2017 5593 4.990426 ACAAGCTTGTTGGAAAATGCATAC 59.010 37.500 26.36 0.00 38.47 2.39
2018 5594 5.221501 ACAAGCTTGTTGGAAAATGCATACT 60.222 36.000 26.36 0.00 38.47 2.12
2019 5595 6.015519 ACAAGCTTGTTGGAAAATGCATACTA 60.016 34.615 26.36 0.00 38.47 1.82
2171 5869 1.345741 TGGCCTGACTTCTCAAGTGAG 59.654 52.381 3.32 1.65 43.03 3.51
2243 5941 4.649088 AACTTTCAGGGTTTAACTGCAC 57.351 40.909 0.00 0.00 35.94 4.57
2306 6004 3.011566 TGTGAAACAGAGCCTTTTGGA 57.988 42.857 0.00 0.00 45.67 3.53
2642 6371 8.588290 ACAAATTTAGCAAAGACCATATACCA 57.412 30.769 0.00 0.00 0.00 3.25
2648 6377 8.492415 TTAGCAAAGACCATATACCATAGTCT 57.508 34.615 0.00 0.00 39.42 3.24
2649 6378 6.998802 AGCAAAGACCATATACCATAGTCTC 58.001 40.000 0.00 0.00 36.81 3.36
2650 6379 6.554982 AGCAAAGACCATATACCATAGTCTCA 59.445 38.462 0.00 0.00 36.81 3.27
2651 6380 6.870965 GCAAAGACCATATACCATAGTCTCAG 59.129 42.308 0.00 0.00 36.81 3.35
2652 6381 7.255977 GCAAAGACCATATACCATAGTCTCAGA 60.256 40.741 0.00 0.00 36.81 3.27
2653 6382 8.642432 CAAAGACCATATACCATAGTCTCAGAA 58.358 37.037 0.00 0.00 36.81 3.02
2654 6383 8.783660 AAGACCATATACCATAGTCTCAGAAA 57.216 34.615 0.00 0.00 36.81 2.52
2655 6384 8.415950 AGACCATATACCATAGTCTCAGAAAG 57.584 38.462 0.00 0.00 32.42 2.62
2672 6401 6.696411 TCAGAAAGTCAGAATTCTCTCCTTC 58.304 40.000 4.57 7.21 33.73 3.46
2698 6427 4.103785 AGTGATCAGGTCAAGGAATATGGG 59.896 45.833 0.00 0.00 38.90 4.00
2807 6537 2.927028 AGCCTGTACTTTCGTTTTGGT 58.073 42.857 0.00 0.00 0.00 3.67
2819 6549 7.764331 ACTTTCGTTTTGGTATGTTAACAACT 58.236 30.769 13.23 0.00 34.60 3.16
2820 6550 8.245491 ACTTTCGTTTTGGTATGTTAACAACTT 58.755 29.630 13.23 0.00 34.60 2.66
2940 6795 6.047231 AGTAAAACACTCGGTCCTATAATGC 58.953 40.000 0.00 0.00 28.33 3.56
3175 7057 3.583228 TGAGAACACCTCCCTCTGTTAA 58.417 45.455 0.00 0.00 41.25 2.01
3250 7426 9.106286 CGTGTGCATTATCATGATATTTGTTAC 57.894 33.333 16.06 16.90 31.07 2.50
3285 7461 5.064198 TGTTAAATAGGTTCCGAAATCAGCG 59.936 40.000 0.00 0.00 0.00 5.18
3602 7784 5.348997 CGTTAAGGGATCTCTTTGTCAGTTC 59.651 44.000 14.35 0.00 0.00 3.01
3698 7880 6.957631 TGGTATAACTGACCTCATTGATGTT 58.042 36.000 0.00 0.00 37.88 2.71
3875 8058 5.710513 TCTTGATGCAACTAAAGCAATGT 57.289 34.783 0.00 0.00 46.27 2.71
3879 8062 7.970061 TCTTGATGCAACTAAAGCAATGTTATC 59.030 33.333 0.00 0.00 46.27 1.75
3883 8066 6.539324 TGCAACTAAAGCAATGTTATCGTAC 58.461 36.000 0.00 0.00 39.39 3.67
3894 8077 6.415280 GCAATGTTATCGTACTACTGAGTGAG 59.585 42.308 0.00 0.00 36.28 3.51
3895 8078 7.473366 CAATGTTATCGTACTACTGAGTGAGT 58.527 38.462 0.00 0.00 36.28 3.41
3938 8121 5.180868 GCATAGATTTCTTGGTGCATCCTAG 59.819 44.000 0.00 2.55 39.74 3.02
3963 8146 1.262950 TGAAACATCTTCCGTTGTGCG 59.737 47.619 0.00 0.00 40.95 5.34
4001 8184 8.292444 TGTAAACATAGGATTCCAATTTCCAG 57.708 34.615 5.29 0.00 34.27 3.86
4058 8241 7.756722 GCTATTGCATCTGTGTGAGTAAAATTT 59.243 33.333 0.00 0.00 39.41 1.82
4063 8246 4.854399 TCTGTGTGAGTAAAATTTTGCCG 58.146 39.130 13.76 0.00 0.00 5.69
4153 8338 6.082338 GGAACAATAATGCGATGTGATCATC 58.918 40.000 0.00 0.00 44.84 2.92
4169 8354 1.738099 ATCGACTTGTGCCGTGAGC 60.738 57.895 0.00 0.00 44.14 4.26
4185 8370 4.495422 CGTGAGCTAGTGAAAGTTGGTAT 58.505 43.478 0.00 0.00 0.00 2.73
4243 8428 2.097825 AGGTGCAAATCATTCCAGAGC 58.902 47.619 0.00 0.00 0.00 4.09
4246 8431 2.751259 GTGCAAATCATTCCAGAGCTCA 59.249 45.455 17.77 0.00 0.00 4.26
4262 8447 1.228800 TCATGTGGTTGCATGCCCA 60.229 52.632 16.68 13.65 44.20 5.36
4275 8460 4.074647 GCCCAAGCAAACCGTACT 57.925 55.556 0.00 0.00 39.53 2.73
4276 8461 2.337361 GCCCAAGCAAACCGTACTT 58.663 52.632 0.00 0.00 39.53 2.24
4277 8462 0.240145 GCCCAAGCAAACCGTACTTC 59.760 55.000 0.00 0.00 39.53 3.01
4278 8463 0.879090 CCCAAGCAAACCGTACTTCC 59.121 55.000 0.00 0.00 0.00 3.46
4279 8464 1.600023 CCAAGCAAACCGTACTTCCA 58.400 50.000 0.00 0.00 0.00 3.53
4280 8465 2.159382 CCAAGCAAACCGTACTTCCAT 58.841 47.619 0.00 0.00 0.00 3.41
4281 8466 3.340034 CCAAGCAAACCGTACTTCCATA 58.660 45.455 0.00 0.00 0.00 2.74
4282 8467 3.754323 CCAAGCAAACCGTACTTCCATAA 59.246 43.478 0.00 0.00 0.00 1.90
4283 8468 4.398044 CCAAGCAAACCGTACTTCCATAAT 59.602 41.667 0.00 0.00 0.00 1.28
4292 8477 6.235664 ACCGTACTTCCATAATCTTTGTTGT 58.764 36.000 0.00 0.00 0.00 3.32
4293 8478 6.148811 ACCGTACTTCCATAATCTTTGTTGTG 59.851 38.462 0.00 0.00 0.00 3.33
4322 8508 2.146342 CTTTGCGCCTATGGATGTAGG 58.854 52.381 4.18 0.00 43.42 3.18
4335 8521 4.044308 TGGATGTAGGATTAAGCTCCCAA 58.956 43.478 0.00 0.00 35.79 4.12
4365 8551 7.053498 TGCAATATGTTGTAGAAAGGCTATGA 58.947 34.615 4.00 0.00 37.65 2.15
4447 8634 7.489239 GGATACTTCCATATAAAGGCTCTCT 57.511 40.000 0.00 0.00 42.12 3.10
4531 8733 3.777465 TTCACAGTACGCCTCTCATAC 57.223 47.619 0.00 0.00 0.00 2.39
4545 8747 3.418047 TCTCATACGAGAGGTTGACACA 58.582 45.455 0.00 0.00 43.55 3.72
4583 8785 4.635223 TGAAGCATCACTGGCATATAGTC 58.365 43.478 0.00 0.00 0.00 2.59
4585 8787 2.630098 AGCATCACTGGCATATAGTCGT 59.370 45.455 0.00 0.00 0.00 4.34
4597 8799 5.350365 GGCATATAGTCGTTTTGTTCAGTGA 59.650 40.000 0.00 0.00 0.00 3.41
4610 8812 4.065088 TGTTCAGTGACAGATAAGCAACC 58.935 43.478 0.00 0.00 0.00 3.77
4619 8827 7.603024 AGTGACAGATAAGCAACCTTTTACTAC 59.397 37.037 0.00 0.00 32.47 2.73
4620 8828 6.877322 TGACAGATAAGCAACCTTTTACTACC 59.123 38.462 0.00 0.00 32.47 3.18
4629 8837 5.250200 CAACCTTTTACTACCAGCCACATA 58.750 41.667 0.00 0.00 0.00 2.29
4642 8850 4.581824 CCAGCCACATATTGTGCTTATTCT 59.418 41.667 2.09 0.00 46.51 2.40
4707 8916 3.128589 ACCATCGAATTGTACATGCCAAC 59.871 43.478 0.00 0.00 0.00 3.77
4729 8938 4.832266 ACCCTCAGAAAAATTGTACATGCA 59.168 37.500 0.00 0.00 0.00 3.96
4730 8939 5.304101 ACCCTCAGAAAAATTGTACATGCAA 59.696 36.000 0.00 0.00 0.00 4.08
4731 8940 5.865552 CCCTCAGAAAAATTGTACATGCAAG 59.134 40.000 0.00 0.00 0.00 4.01
4732 8941 6.294675 CCCTCAGAAAAATTGTACATGCAAGA 60.295 38.462 0.00 0.00 0.00 3.02
4733 8942 7.318141 CCTCAGAAAAATTGTACATGCAAGAT 58.682 34.615 0.00 0.00 0.00 2.40
4734 8943 7.816031 CCTCAGAAAAATTGTACATGCAAGATT 59.184 33.333 0.00 0.00 0.00 2.40
4735 8944 9.199982 CTCAGAAAAATTGTACATGCAAGATTT 57.800 29.630 0.00 0.00 0.00 2.17
4736 8945 9.545105 TCAGAAAAATTGTACATGCAAGATTTT 57.455 25.926 0.00 2.15 35.73 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.043113 TCATGAACACTAGTGAAATAAGCAGAT 58.957 33.333 29.30 0.00 0.00 2.90
58 59 8.976986 AATTTCAGAAAGCTTATCATGAACAC 57.023 30.769 0.00 0.00 0.00 3.32
86 87 7.699391 CCGACAGAATTTTCATCGTACTTAGTA 59.301 37.037 12.85 0.00 36.76 1.82
88 89 6.750501 TCCGACAGAATTTTCATCGTACTTAG 59.249 38.462 12.85 0.00 36.76 2.18
104 105 1.530013 GGACCCGAACTCCGACAGAA 61.530 60.000 0.00 0.00 41.76 3.02
106 107 1.812686 TTGGACCCGAACTCCGACAG 61.813 60.000 0.00 0.00 41.76 3.51
109 110 1.594833 CATTGGACCCGAACTCCGA 59.405 57.895 0.00 0.00 41.76 4.55
121 122 1.076549 GTTGGTGGAGGCCATTGGA 59.923 57.895 5.01 0.00 38.48 3.53
126 127 2.424842 GATGGTGTTGGTGGAGGCCA 62.425 60.000 5.01 0.00 36.62 5.36
128 129 2.040544 CGATGGTGTTGGTGGAGGC 61.041 63.158 0.00 0.00 0.00 4.70
146 147 5.923114 GCATTTCTCCTTTCTTCTTCCAAAC 59.077 40.000 0.00 0.00 0.00 2.93
149 150 4.728772 TGCATTTCTCCTTTCTTCTTCCA 58.271 39.130 0.00 0.00 0.00 3.53
164 165 1.956477 AGGCGGAACCATATGCATTTC 59.044 47.619 3.54 1.94 43.14 2.17
165 166 1.956477 GAGGCGGAACCATATGCATTT 59.044 47.619 3.54 0.00 43.14 2.32
167 168 0.250901 GGAGGCGGAACCATATGCAT 60.251 55.000 3.79 3.79 43.14 3.96
168 169 1.148273 GGAGGCGGAACCATATGCA 59.852 57.895 0.00 0.00 43.14 3.96
170 171 1.051812 AGAGGAGGCGGAACCATATG 58.948 55.000 0.00 0.00 43.14 1.78
171 172 1.694696 GAAGAGGAGGCGGAACCATAT 59.305 52.381 0.00 0.00 43.14 1.78
172 173 1.120530 GAAGAGGAGGCGGAACCATA 58.879 55.000 0.00 0.00 43.14 2.74
174 175 2.291043 GGAAGAGGAGGCGGAACCA 61.291 63.158 0.00 0.00 43.14 3.67
176 177 1.258445 TGAGGAAGAGGAGGCGGAAC 61.258 60.000 0.00 0.00 0.00 3.62
178 179 0.972983 CTTGAGGAAGAGGAGGCGGA 60.973 60.000 0.00 0.00 0.00 5.54
179 180 1.519719 CTTGAGGAAGAGGAGGCGG 59.480 63.158 0.00 0.00 0.00 6.13
180 181 1.153469 GCTTGAGGAAGAGGAGGCG 60.153 63.158 0.00 0.00 0.00 5.52
181 182 0.177836 GAGCTTGAGGAAGAGGAGGC 59.822 60.000 0.00 0.00 0.00 4.70
182 183 1.864669 AGAGCTTGAGGAAGAGGAGG 58.135 55.000 0.00 0.00 0.00 4.30
188 196 3.259374 TGGTGTAGAAGAGCTTGAGGAAG 59.741 47.826 0.00 0.00 0.00 3.46
195 203 4.623932 TGATGTTGGTGTAGAAGAGCTT 57.376 40.909 0.00 0.00 0.00 3.74
203 211 3.127548 GCCTGATGTTGATGTTGGTGTAG 59.872 47.826 0.00 0.00 0.00 2.74
204 212 3.081061 GCCTGATGTTGATGTTGGTGTA 58.919 45.455 0.00 0.00 0.00 2.90
217 225 1.492176 CTAACTCCCCATGCCTGATGT 59.508 52.381 0.00 0.00 0.00 3.06
226 234 0.743097 GTACGTCGCTAACTCCCCAT 59.257 55.000 0.00 0.00 0.00 4.00
228 236 1.034292 AGGTACGTCGCTAACTCCCC 61.034 60.000 0.00 0.00 0.00 4.81
235 255 1.063027 CGATGTTGAGGTACGTCGCTA 59.937 52.381 10.75 0.29 46.57 4.26
253 273 1.347707 ACAGGGAGCTGATTTTGTCGA 59.652 47.619 0.00 0.00 0.00 4.20
269 289 4.146745 TCATCATCATGTTCCTGACAGG 57.853 45.455 15.99 15.99 42.62 4.00
273 293 5.573219 AGGTTTTCATCATCATGTTCCTGA 58.427 37.500 0.00 0.00 0.00 3.86
276 296 5.902613 TGAGGTTTTCATCATCATGTTCC 57.097 39.130 0.00 0.00 35.63 3.62
282 302 8.352137 ACAATATGTTGAGGTTTTCATCATCA 57.648 30.769 9.40 0.00 42.47 3.07
293 313 3.906720 ACCGCTACAATATGTTGAGGT 57.093 42.857 9.40 12.76 46.79 3.85
295 315 2.287915 GCCACCGCTACAATATGTTGAG 59.712 50.000 9.40 3.65 38.71 3.02
307 327 0.250510 TTGTGTTCATGCCACCGCTA 60.251 50.000 11.36 0.00 35.36 4.26
310 330 1.081242 GCTTGTGTTCATGCCACCG 60.081 57.895 11.36 5.57 38.33 4.94
334 354 3.199677 CCGTTATGGAAAGCACCGAATA 58.800 45.455 0.00 0.00 42.00 1.75
337 357 0.322322 ACCGTTATGGAAAGCACCGA 59.678 50.000 0.00 0.00 42.00 4.69
369 407 4.876125 TGAAAGCAGACTCCGATGATATC 58.124 43.478 0.00 0.00 0.00 1.63
390 428 7.044181 TGTCAATTATTCTTCCTGCTAGACTG 58.956 38.462 0.00 0.00 0.00 3.51
400 438 9.003658 TGTTCTTCTCTTGTCAATTATTCTTCC 57.996 33.333 0.00 0.00 0.00 3.46
407 445 8.204160 TGAGACTTGTTCTTCTCTTGTCAATTA 58.796 33.333 0.00 0.00 39.30 1.40
414 452 5.814705 ACTTGTGAGACTTGTTCTTCTCTTG 59.185 40.000 0.00 0.00 39.30 3.02
415 453 5.814705 CACTTGTGAGACTTGTTCTTCTCTT 59.185 40.000 0.00 0.00 39.30 2.85
440 478 8.118600 TCATAGAGATGTGTCCTCACCATATAT 58.881 37.037 0.00 0.00 43.26 0.86
441 479 7.470192 TCATAGAGATGTGTCCTCACCATATA 58.530 38.462 0.00 0.00 43.26 0.86
457 495 8.402798 AGTAGATCGATGTTGTTCATAGAGAT 57.597 34.615 0.54 0.00 40.41 2.75
458 496 7.809546 AGTAGATCGATGTTGTTCATAGAGA 57.190 36.000 0.54 0.00 40.41 3.10
459 497 9.767684 GATAGTAGATCGATGTTGTTCATAGAG 57.232 37.037 0.54 0.00 40.41 2.43
460 498 8.731605 GGATAGTAGATCGATGTTGTTCATAGA 58.268 37.037 0.54 0.00 41.08 1.98
499 634 6.965500 TCTCGTTGTTCATCGTCTAGATAAAC 59.035 38.462 0.00 0.00 37.87 2.01
500 635 7.080353 TCTCGTTGTTCATCGTCTAGATAAA 57.920 36.000 0.00 0.00 37.52 1.40
501 636 6.673154 TCTCGTTGTTCATCGTCTAGATAA 57.327 37.500 0.00 0.00 37.52 1.75
502 637 6.537660 TCTTCTCGTTGTTCATCGTCTAGATA 59.462 38.462 0.00 0.00 37.52 1.98
503 638 5.354513 TCTTCTCGTTGTTCATCGTCTAGAT 59.645 40.000 0.00 0.00 41.01 1.98
504 639 4.694037 TCTTCTCGTTGTTCATCGTCTAGA 59.306 41.667 0.00 0.00 0.00 2.43
505 640 4.971008 TCTTCTCGTTGTTCATCGTCTAG 58.029 43.478 3.77 0.00 0.00 2.43
506 641 5.366829 TTCTTCTCGTTGTTCATCGTCTA 57.633 39.130 3.77 0.00 0.00 2.59
507 642 3.917329 TCTTCTCGTTGTTCATCGTCT 57.083 42.857 3.77 0.00 0.00 4.18
508 643 5.800941 ACTATTCTTCTCGTTGTTCATCGTC 59.199 40.000 3.77 0.00 0.00 4.20
509 644 5.710984 ACTATTCTTCTCGTTGTTCATCGT 58.289 37.500 3.77 0.00 0.00 3.73
510 645 6.089551 ACAACTATTCTTCTCGTTGTTCATCG 59.910 38.462 0.00 0.00 45.28 3.84
511 646 7.352719 ACAACTATTCTTCTCGTTGTTCATC 57.647 36.000 0.00 0.00 45.28 2.92
512 647 8.827177 TTACAACTATTCTTCTCGTTGTTCAT 57.173 30.769 11.23 0.00 45.28 2.57
513 648 8.827177 ATTACAACTATTCTTCTCGTTGTTCA 57.173 30.769 11.23 1.33 45.28 3.18
514 649 9.141400 AGATTACAACTATTCTTCTCGTTGTTC 57.859 33.333 11.23 5.21 45.28 3.18
515 650 9.490379 AAGATTACAACTATTCTTCTCGTTGTT 57.510 29.630 11.23 0.00 45.28 2.83
517 652 9.746711 CAAAGATTACAACTATTCTTCTCGTTG 57.253 33.333 0.00 0.00 41.71 4.10
518 653 9.706691 TCAAAGATTACAACTATTCTTCTCGTT 57.293 29.630 0.00 0.00 0.00 3.85
519 654 9.706691 TTCAAAGATTACAACTATTCTTCTCGT 57.293 29.630 0.00 0.00 0.00 4.18
550 685 9.607988 ACCGGAAAAGAAAAATACAAAAGAATT 57.392 25.926 9.46 0.00 0.00 2.17
551 686 9.256477 GACCGGAAAAGAAAAATACAAAAGAAT 57.744 29.630 9.46 0.00 0.00 2.40
552 687 8.251721 TGACCGGAAAAGAAAAATACAAAAGAA 58.748 29.630 9.46 0.00 0.00 2.52
553 688 7.773149 TGACCGGAAAAGAAAAATACAAAAGA 58.227 30.769 9.46 0.00 0.00 2.52
589 724 1.339727 CCCGGGTAAGGAAAAGGAGTG 60.340 57.143 14.18 0.00 0.00 3.51
644 779 9.806203 TGTCATATGGATAAATTTTGAGCTTTG 57.194 29.630 2.13 0.00 0.00 2.77
654 789 7.781693 AGAGGCAAAGTGTCATATGGATAAATT 59.218 33.333 2.13 0.00 0.00 1.82
757 928 0.538516 TTCGGGCCTTTAGCTTTGCA 60.539 50.000 0.84 0.00 43.05 4.08
758 929 0.601057 TTTCGGGCCTTTAGCTTTGC 59.399 50.000 0.84 0.00 43.05 3.68
801 972 2.980475 CCGGCCCACGTAGGTTTA 59.020 61.111 0.97 0.00 42.24 2.01
837 1008 0.535335 ACGCCAGATAAAAGAGCCGA 59.465 50.000 0.00 0.00 0.00 5.54
842 1013 3.946604 TGGCACGCCAGATAAAAGA 57.053 47.368 6.67 0.00 41.89 2.52
886 1057 3.134458 GCCAACAGTATAGAGGCATCAC 58.866 50.000 0.00 0.00 44.59 3.06
922 1106 1.332686 GATTTTTATGGACGACCCGGC 59.667 52.381 0.00 0.00 37.93 6.13
924 1108 4.551990 CGAATGATTTTTATGGACGACCCG 60.552 45.833 0.34 0.00 37.93 5.28
925 1109 4.334481 ACGAATGATTTTTATGGACGACCC 59.666 41.667 0.34 0.00 34.81 4.46
926 1110 5.479716 ACGAATGATTTTTATGGACGACC 57.520 39.130 0.00 0.00 0.00 4.79
927 1111 7.241376 AGAAACGAATGATTTTTATGGACGAC 58.759 34.615 0.00 0.00 0.00 4.34
928 1112 7.372451 AGAAACGAATGATTTTTATGGACGA 57.628 32.000 0.00 0.00 0.00 4.20
929 1113 6.687105 GGAGAAACGAATGATTTTTATGGACG 59.313 38.462 0.00 0.00 0.00 4.79
930 1114 6.972901 GGGAGAAACGAATGATTTTTATGGAC 59.027 38.462 0.00 0.00 0.00 4.02
931 1115 6.661377 TGGGAGAAACGAATGATTTTTATGGA 59.339 34.615 0.00 0.00 0.00 3.41
932 1116 6.862209 TGGGAGAAACGAATGATTTTTATGG 58.138 36.000 0.00 0.00 0.00 2.74
933 1117 8.028938 AGTTGGGAGAAACGAATGATTTTTATG 58.971 33.333 0.00 0.00 35.13 1.90
934 1118 8.122472 AGTTGGGAGAAACGAATGATTTTTAT 57.878 30.769 0.00 0.00 35.13 1.40
936 1120 6.405278 AGTTGGGAGAAACGAATGATTTTT 57.595 33.333 0.00 0.00 35.13 1.94
942 3091 1.732259 CGGAGTTGGGAGAAACGAATG 59.268 52.381 0.00 0.00 35.13 2.67
969 3123 2.570415 TTGCAAACAGGGGACGATTA 57.430 45.000 0.00 0.00 0.00 1.75
984 3138 1.078918 CATGGCCGAGAGAGTTGCA 60.079 57.895 0.00 0.00 0.00 4.08
1129 4573 2.308722 TGTTGGGATGGGAGAGGGC 61.309 63.158 0.00 0.00 0.00 5.19
1445 4926 7.377398 TGTTGCAATACAGCACAATTCTTAAT 58.623 30.769 0.59 0.00 45.61 1.40
1463 4947 6.265196 ACCATTCTTCAGATAACTTGTTGCAA 59.735 34.615 0.00 0.00 0.00 4.08
1491 4975 3.864789 AAGTATGCAGACCCCTAATGG 57.135 47.619 8.08 0.00 0.00 3.16
1912 5439 3.714487 AACAGCACCCAACTGCCGT 62.714 57.895 0.00 0.00 38.79 5.68
1913 5440 2.906897 AACAGCACCCAACTGCCG 60.907 61.111 0.00 0.00 38.79 5.69
1973 5549 8.084684 GCTTGTCAAATATGGAGGGAATAATTC 58.915 37.037 0.00 0.00 0.00 2.17
1982 5558 5.404946 CAACAAGCTTGTCAAATATGGAGG 58.595 41.667 31.20 0.64 41.31 4.30
2044 5626 7.664552 AGATTCAATAAGAATGATGGCCAAA 57.335 32.000 10.96 0.32 46.76 3.28
2171 5869 6.581171 ATGTTTTTCACTCAAGAATCCCTC 57.419 37.500 0.00 0.00 0.00 4.30
2243 5941 0.533032 ACCCACCAAACAAAACCACG 59.467 50.000 0.00 0.00 0.00 4.94
2306 6004 3.684788 CACGAAGCAATAACAGTAAGCCT 59.315 43.478 0.00 0.00 0.00 4.58
2609 6313 9.995003 TGGTCTTTGCTAAATTTGTTTTCATAT 57.005 25.926 0.00 0.00 0.00 1.78
2631 6345 8.184304 ACTTTCTGAGACTATGGTATATGGTC 57.816 38.462 0.00 0.00 0.00 4.02
2642 6371 8.593945 AGAGAATTCTGACTTTCTGAGACTAT 57.406 34.615 14.00 0.00 32.46 2.12
2648 6377 6.295575 GGAAGGAGAGAATTCTGACTTTCTGA 60.296 42.308 14.00 0.00 32.46 3.27
2649 6378 5.874261 GGAAGGAGAGAATTCTGACTTTCTG 59.126 44.000 14.00 0.00 32.46 3.02
2650 6379 5.045942 GGGAAGGAGAGAATTCTGACTTTCT 60.046 44.000 14.00 2.20 34.95 2.52
2651 6380 5.182487 GGGAAGGAGAGAATTCTGACTTTC 58.818 45.833 14.00 16.22 32.53 2.62
2652 6381 4.599241 TGGGAAGGAGAGAATTCTGACTTT 59.401 41.667 14.00 8.90 32.53 2.66
2653 6382 4.171234 TGGGAAGGAGAGAATTCTGACTT 58.829 43.478 14.00 13.35 32.53 3.01
2654 6383 3.774216 CTGGGAAGGAGAGAATTCTGACT 59.226 47.826 14.00 4.34 32.53 3.41
2655 6384 3.517500 ACTGGGAAGGAGAGAATTCTGAC 59.482 47.826 14.00 6.32 32.53 3.51
2672 6401 1.279496 TCCTTGACCTGATCACTGGG 58.721 55.000 6.01 2.18 36.92 4.45
2698 6427 9.076596 GTGAATTTCTTTATGCAGGTCAAATAC 57.923 33.333 0.00 0.00 0.00 1.89
2819 6549 9.527157 TTATTGGATGGAGAGATTGTAACAAAA 57.473 29.630 0.00 0.00 0.00 2.44
2820 6550 9.527157 TTTATTGGATGGAGAGATTGTAACAAA 57.473 29.630 0.00 0.00 0.00 2.83
3025 6881 2.633481 GAGTAAAGGTGTCCTGTCCTGT 59.367 50.000 0.00 0.00 32.13 4.00
3026 6882 2.028020 GGAGTAAAGGTGTCCTGTCCTG 60.028 54.545 0.00 0.00 32.13 3.86
3027 6883 2.258109 GGAGTAAAGGTGTCCTGTCCT 58.742 52.381 0.00 0.00 32.13 3.85
3028 6884 1.975680 TGGAGTAAAGGTGTCCTGTCC 59.024 52.381 0.00 0.00 32.13 4.02
3029 6885 3.764237 TTGGAGTAAAGGTGTCCTGTC 57.236 47.619 0.00 0.00 32.13 3.51
3250 7426 7.589954 CGGAACCTATTTAACAGTCACAAAAAG 59.410 37.037 0.00 0.00 0.00 2.27
3255 7431 5.471556 TCGGAACCTATTTAACAGTCACA 57.528 39.130 0.00 0.00 0.00 3.58
3285 7461 5.194432 TCTAGGTCATAGGGATTAGCGATC 58.806 45.833 0.00 0.00 31.83 3.69
3602 7784 2.840651 ACCTGTAGAGGGTCCATGAAAG 59.159 50.000 11.23 0.00 44.84 2.62
3698 7880 2.668556 GCGTCTCTGAACATCGAACTCA 60.669 50.000 0.00 0.00 0.00 3.41
3757 7940 7.028962 CCAAAACAATGTGTCACATACCATAG 58.971 38.462 18.70 8.26 37.97 2.23
3847 8030 5.945784 TGCTTTAGTTGCATCAAGAATAGGT 59.054 36.000 0.00 0.00 35.31 3.08
3875 8058 7.607607 TGGTTTACTCACTCAGTAGTACGATAA 59.392 37.037 0.00 0.00 38.90 1.75
3879 8062 5.618056 TGGTTTACTCACTCAGTAGTACG 57.382 43.478 0.00 0.00 38.90 3.67
3908 8091 4.627035 GCACCAAGAAATCTATGCCAAAAC 59.373 41.667 3.92 0.00 0.00 2.43
3918 8101 4.225942 TCACTAGGATGCACCAAGAAATCT 59.774 41.667 7.86 0.00 42.04 2.40
3921 8104 3.327757 AGTCACTAGGATGCACCAAGAAA 59.672 43.478 7.86 0.00 42.04 2.52
3928 8111 3.664107 TGTTTCAGTCACTAGGATGCAC 58.336 45.455 0.00 0.00 0.00 4.57
3938 8121 3.560068 ACAACGGAAGATGTTTCAGTCAC 59.440 43.478 0.00 0.00 45.36 3.67
3988 8171 2.607499 TGCCACACTGGAAATTGGAAT 58.393 42.857 0.00 0.00 40.96 3.01
3995 8178 1.702401 TGTCCTATGCCACACTGGAAA 59.298 47.619 0.00 0.00 40.96 3.13
4001 8184 3.947196 TGATTTCATGTCCTATGCCACAC 59.053 43.478 0.00 0.00 0.00 3.82
4050 8233 3.004944 TGTGACCCTCGGCAAAATTTTAC 59.995 43.478 2.44 0.00 0.00 2.01
4058 8241 2.350895 CCATGTGACCCTCGGCAA 59.649 61.111 0.00 0.00 0.00 4.52
4063 8246 1.995376 AAACAACCCATGTGACCCTC 58.005 50.000 0.00 0.00 42.99 4.30
4097 8280 6.932960 AGTCCAGTACAACAATACCAACTAAC 59.067 38.462 0.00 0.00 0.00 2.34
4098 8281 6.932400 CAGTCCAGTACAACAATACCAACTAA 59.068 38.462 0.00 0.00 0.00 2.24
4105 8288 6.757010 CCAGATACAGTCCAGTACAACAATAC 59.243 42.308 0.00 0.00 0.00 1.89
4224 8409 2.097825 AGCTCTGGAATGATTTGCACC 58.902 47.619 0.00 0.00 0.00 5.01
4246 8431 1.976898 CTTGGGCATGCAACCACAT 59.023 52.632 21.36 0.00 36.27 3.21
4262 8447 5.497474 AGATTATGGAAGTACGGTTTGCTT 58.503 37.500 0.00 0.00 31.86 3.91
4269 8454 6.370442 TCACAACAAAGATTATGGAAGTACGG 59.630 38.462 0.00 0.00 0.00 4.02
4270 8455 7.359262 TCACAACAAAGATTATGGAAGTACG 57.641 36.000 0.00 0.00 0.00 3.67
4273 8458 9.466497 ACATATCACAACAAAGATTATGGAAGT 57.534 29.630 0.00 0.00 0.00 3.01
4281 8466 9.793252 GCAAAGATACATATCACAACAAAGATT 57.207 29.630 1.88 0.00 35.17 2.40
4282 8467 8.124823 CGCAAAGATACATATCACAACAAAGAT 58.875 33.333 1.88 0.00 35.17 2.40
4283 8468 7.463544 CGCAAAGATACATATCACAACAAAGA 58.536 34.615 1.88 0.00 35.17 2.52
4292 8477 5.046663 TCCATAGGCGCAAAGATACATATCA 60.047 40.000 10.83 0.00 35.17 2.15
4293 8478 5.419542 TCCATAGGCGCAAAGATACATATC 58.580 41.667 10.83 0.00 0.00 1.63
4322 8508 2.428171 TGCAGCAATTGGGAGCTTAATC 59.572 45.455 7.72 0.00 39.50 1.75
4335 8521 6.567050 CCTTTCTACAACATATTGCAGCAAT 58.433 36.000 23.96 23.96 39.66 3.56
4365 8551 7.712639 CCTTGACAGTCTATTATACAGCAACAT 59.287 37.037 1.31 0.00 0.00 2.71
4433 8620 6.625267 TGGACCTTAGAGAGAGCCTTTATAT 58.375 40.000 0.00 0.00 0.00 0.86
4464 8651 2.420022 CTCAAACTATTGGGCCTTGACG 59.580 50.000 4.53 0.00 37.15 4.35
4471 8658 8.454106 CAATAGCATATACTCAAACTATTGGGC 58.546 37.037 11.06 0.00 40.96 5.36
4531 8733 0.389391 ACCTGTGTGTCAACCTCTCG 59.611 55.000 0.00 0.00 0.00 4.04
4538 8740 0.986019 ACCCTGGACCTGTGTGTCAA 60.986 55.000 0.00 0.00 36.97 3.18
4545 8747 0.399949 TTCAGACACCCTGGACCTGT 60.400 55.000 0.00 0.00 43.12 4.00
4583 8785 5.140177 GCTTATCTGTCACTGAACAAAACG 58.860 41.667 0.00 0.00 0.00 3.60
4585 8787 6.459573 GGTTGCTTATCTGTCACTGAACAAAA 60.460 38.462 0.00 0.00 0.00 2.44
4597 8799 6.775708 TGGTAGTAAAAGGTTGCTTATCTGT 58.224 36.000 0.00 0.00 31.48 3.41
4610 8812 6.785191 CACAATATGTGGCTGGTAGTAAAAG 58.215 40.000 2.56 0.00 44.27 2.27
4629 8837 6.179756 TCCACATACACAGAATAAGCACAAT 58.820 36.000 0.00 0.00 0.00 2.71
4670 8878 9.923143 CAATTCGATGGTCCTATACTTTACATA 57.077 33.333 0.00 0.00 0.00 2.29
4691 8900 3.088532 TGAGGGTTGGCATGTACAATTC 58.911 45.455 0.00 7.44 0.00 2.17
4694 8903 1.702401 TCTGAGGGTTGGCATGTACAA 59.298 47.619 0.00 0.00 0.00 2.41
4707 8916 5.389859 TGCATGTACAATTTTTCTGAGGG 57.610 39.130 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.