Multiple sequence alignment - TraesCS4A01G236300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G236300 chr4A 100.000 3245 0 0 1 3245 545107960 545104716 0.000000e+00 5993.0
1 TraesCS4A01G236300 chr4A 94.758 763 39 1 2483 3245 609652604 609653365 0.000000e+00 1186.0
2 TraesCS4A01G236300 chr4A 88.071 394 33 5 1 382 570795870 570796261 3.820000e-124 455.0
3 TraesCS4A01G236300 chr4B 92.728 1719 80 13 616 2302 75756498 75758203 0.000000e+00 2440.0
4 TraesCS4A01G236300 chr4B 91.005 189 13 4 2296 2483 75758841 75759026 5.370000e-63 252.0
5 TraesCS4A01G236300 chr4B 88.462 52 5 1 582 632 662699371 662699320 9.720000e-06 62.1
6 TraesCS4A01G236300 chr4D 92.980 1510 73 17 795 2302 51608300 51609778 0.000000e+00 2170.0
7 TraesCS4A01G236300 chr4D 92.063 189 13 2 2296 2483 51610053 51610240 6.900000e-67 265.0
8 TraesCS4A01G236300 chr7A 95.801 762 31 1 2484 3245 130299818 130300578 0.000000e+00 1229.0
9 TraesCS4A01G236300 chr7A 94.778 766 36 4 2482 3245 42971044 42970281 0.000000e+00 1190.0
10 TraesCS4A01G236300 chr7A 89.552 67 7 0 2364 2430 679061851 679061785 5.770000e-13 86.1
11 TraesCS4A01G236300 chr3A 95.413 763 33 2 2483 3244 738658485 738659246 0.000000e+00 1214.0
12 TraesCS4A01G236300 chr3A 94.889 763 37 2 2483 3244 738579996 738580757 0.000000e+00 1192.0
13 TraesCS4A01G236300 chr3A 85.856 403 45 3 1 392 71110822 71110421 5.010000e-113 418.0
14 TraesCS4A01G236300 chrUn 94.889 763 37 2 2483 3244 316507656 316506895 0.000000e+00 1192.0
15 TraesCS4A01G236300 chrUn 94.758 763 38 2 2483 3244 259680435 259681196 0.000000e+00 1186.0
16 TraesCS4A01G236300 chr2A 94.654 767 38 3 2481 3245 24395971 24395206 0.000000e+00 1186.0
17 TraesCS4A01G236300 chr1A 94.524 767 40 1 2479 3245 361379802 361379038 0.000000e+00 1182.0
18 TraesCS4A01G236300 chr1A 91.489 47 4 0 592 638 497318185 497318139 7.510000e-07 65.8
19 TraesCS4A01G236300 chr1A 91.489 47 3 1 594 640 526647404 526647359 2.700000e-06 63.9
20 TraesCS4A01G236300 chr7B 91.398 372 25 5 2 371 745303547 745303913 1.340000e-138 503.0
21 TraesCS4A01G236300 chr7B 83.976 337 37 10 1 326 748016840 748016510 1.130000e-79 307.0
22 TraesCS4A01G236300 chr5D 94.089 203 11 1 1132 1333 87173767 87173565 1.130000e-79 307.0
23 TraesCS4A01G236300 chr5A 93.596 203 12 1 1132 1333 80155825 80155623 5.260000e-78 302.0
24 TraesCS4A01G236300 chr5B 91.364 220 15 3 1132 1347 93212501 93212282 6.810000e-77 298.0
25 TraesCS4A01G236300 chr5B 77.273 176 34 6 1153 1325 602341200 602341028 7.410000e-17 99.0
26 TraesCS4A01G236300 chr6B 88.500 200 17 4 1157 1356 699018603 699018410 1.500000e-58 237.0
27 TraesCS4A01G236300 chr6B 95.238 42 2 0 588 629 37927452 37927411 2.090000e-07 67.6
28 TraesCS4A01G236300 chr2D 78.049 164 32 4 1163 1324 538055265 538055104 2.060000e-17 100.0
29 TraesCS4A01G236300 chr2B 78.049 164 32 4 1163 1324 640765305 640765144 2.060000e-17 100.0
30 TraesCS4A01G236300 chr7D 91.837 49 4 0 594 642 64978173 64978221 5.810000e-08 69.4
31 TraesCS4A01G236300 chr1B 87.302 63 5 3 585 647 10201017 10200958 5.810000e-08 69.4
32 TraesCS4A01G236300 chr6D 93.182 44 3 0 594 637 87367597 87367554 7.510000e-07 65.8
33 TraesCS4A01G236300 chr3B 95.122 41 2 0 595 635 43050370 43050410 7.510000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G236300 chr4A 545104716 545107960 3244 True 5993.0 5993 100.0000 1 3245 1 chr4A.!!$R1 3244
1 TraesCS4A01G236300 chr4A 609652604 609653365 761 False 1186.0 1186 94.7580 2483 3245 1 chr4A.!!$F2 762
2 TraesCS4A01G236300 chr4B 75756498 75759026 2528 False 1346.0 2440 91.8665 616 2483 2 chr4B.!!$F1 1867
3 TraesCS4A01G236300 chr4D 51608300 51610240 1940 False 1217.5 2170 92.5215 795 2483 2 chr4D.!!$F1 1688
4 TraesCS4A01G236300 chr7A 130299818 130300578 760 False 1229.0 1229 95.8010 2484 3245 1 chr7A.!!$F1 761
5 TraesCS4A01G236300 chr7A 42970281 42971044 763 True 1190.0 1190 94.7780 2482 3245 1 chr7A.!!$R1 763
6 TraesCS4A01G236300 chr3A 738658485 738659246 761 False 1214.0 1214 95.4130 2483 3244 1 chr3A.!!$F2 761
7 TraesCS4A01G236300 chr3A 738579996 738580757 761 False 1192.0 1192 94.8890 2483 3244 1 chr3A.!!$F1 761
8 TraesCS4A01G236300 chrUn 316506895 316507656 761 True 1192.0 1192 94.8890 2483 3244 1 chrUn.!!$R1 761
9 TraesCS4A01G236300 chrUn 259680435 259681196 761 False 1186.0 1186 94.7580 2483 3244 1 chrUn.!!$F1 761
10 TraesCS4A01G236300 chr2A 24395206 24395971 765 True 1186.0 1186 94.6540 2481 3245 1 chr2A.!!$R1 764
11 TraesCS4A01G236300 chr1A 361379038 361379802 764 True 1182.0 1182 94.5240 2479 3245 1 chr1A.!!$R1 766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 0.109689 AGAACGAAGGAACGCGAGAG 60.110 55.0 15.93 0.0 36.70 3.20 F
705 706 0.240411 AGACGAGGTCTTGCACGTAC 59.760 55.0 0.00 0.0 40.28 3.67 F
805 807 0.310854 CCAAAACTGTCCTCAACCGC 59.689 55.0 0.00 0.0 0.00 5.68 F
1677 1707 0.385348 CTCGAGACGCGGATGATGAG 60.385 60.0 12.47 6.0 41.33 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1574 1604 0.040603 GAAGTCGTCGACGTGGAAGT 60.041 55.0 34.40 17.36 40.80 3.01 R
1677 1707 0.461961 CCTCGGACACATCCTCTTCC 59.538 60.0 0.00 0.00 43.73 3.46 R
2217 2250 0.540454 TGAAGCAGATGAGAGCCAGG 59.460 55.0 0.00 0.00 0.00 4.45 R
3061 3765 0.520404 GAGTTGCCATGTGCTCACAG 59.480 55.0 8.74 0.00 45.48 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 4.467084 GGCGAGCCCGATGGAACA 62.467 66.667 1.97 0.00 38.70 3.18
60 61 3.195698 GCGAGCCCGATGGAACAC 61.196 66.667 0.00 0.00 37.47 3.32
70 71 3.065306 TGGAACACCGCCACCTAG 58.935 61.111 0.00 0.00 0.00 3.02
71 72 2.267961 GGAACACCGCCACCTAGG 59.732 66.667 7.41 7.41 41.84 3.02
72 73 2.590114 GGAACACCGCCACCTAGGT 61.590 63.158 9.21 9.21 42.34 3.08
73 74 1.079336 GAACACCGCCACCTAGGTC 60.079 63.158 12.84 0.11 39.00 3.85
74 75 2.517484 GAACACCGCCACCTAGGTCC 62.517 65.000 12.84 5.17 39.00 4.46
75 76 3.000819 CACCGCCACCTAGGTCCA 61.001 66.667 12.84 0.00 39.00 4.02
76 77 3.001406 ACCGCCACCTAGGTCCAC 61.001 66.667 12.84 3.18 40.61 4.02
77 78 3.782443 CCGCCACCTAGGTCCACC 61.782 72.222 12.84 0.00 40.61 4.61
78 79 3.782443 CGCCACCTAGGTCCACCC 61.782 72.222 12.84 0.00 40.61 4.61
79 80 3.408853 GCCACCTAGGTCCACCCC 61.409 72.222 12.84 0.00 40.61 4.95
80 81 2.691252 CCACCTAGGTCCACCCCC 60.691 72.222 12.84 0.00 36.42 5.40
124 125 4.962836 GGCCCATCCCGCATCCAG 62.963 72.222 0.00 0.00 0.00 3.86
125 126 3.877450 GCCCATCCCGCATCCAGA 61.877 66.667 0.00 0.00 0.00 3.86
126 127 2.429058 CCCATCCCGCATCCAGAG 59.571 66.667 0.00 0.00 0.00 3.35
127 128 2.429058 CCATCCCGCATCCAGAGG 59.571 66.667 0.00 0.00 36.87 3.69
132 133 3.866582 CCGCATCCAGAGGGGTCC 61.867 72.222 0.00 0.00 38.11 4.46
133 134 3.083349 CGCATCCAGAGGGGTCCA 61.083 66.667 0.00 0.00 38.11 4.02
134 135 2.914289 GCATCCAGAGGGGTCCAG 59.086 66.667 0.00 0.00 38.11 3.86
135 136 2.750657 GCATCCAGAGGGGTCCAGG 61.751 68.421 0.00 0.00 38.11 4.45
136 137 1.003442 CATCCAGAGGGGTCCAGGA 59.997 63.158 0.00 0.00 38.11 3.86
137 138 1.003573 ATCCAGAGGGGTCCAGGAC 59.996 63.158 11.70 11.70 38.11 3.85
138 139 2.880629 ATCCAGAGGGGTCCAGGACG 62.881 65.000 13.80 0.00 38.11 4.79
139 140 2.037367 CAGAGGGGTCCAGGACGA 59.963 66.667 13.80 0.00 32.65 4.20
140 141 2.037527 AGAGGGGTCCAGGACGAC 59.962 66.667 13.80 8.82 32.65 4.34
146 147 3.045142 GTCCAGGACGACCACGAA 58.955 61.111 3.05 0.00 42.66 3.85
147 148 1.080705 GTCCAGGACGACCACGAAG 60.081 63.158 3.05 0.00 42.66 3.79
148 149 2.432628 CCAGGACGACCACGAAGC 60.433 66.667 6.71 0.00 42.66 3.86
149 150 2.432628 CAGGACGACCACGAAGCC 60.433 66.667 6.71 0.00 42.66 4.35
150 151 3.692406 AGGACGACCACGAAGCCC 61.692 66.667 6.71 0.00 42.66 5.19
151 152 3.998672 GGACGACCACGAAGCCCA 61.999 66.667 0.00 0.00 42.66 5.36
152 153 2.737376 GACGACCACGAAGCCCAC 60.737 66.667 0.00 0.00 42.66 4.61
153 154 3.222354 GACGACCACGAAGCCCACT 62.222 63.158 0.00 0.00 42.66 4.00
154 155 2.738521 CGACCACGAAGCCCACTG 60.739 66.667 0.00 0.00 42.66 3.66
155 156 3.050275 GACCACGAAGCCCACTGC 61.050 66.667 0.00 0.00 41.71 4.40
156 157 4.643387 ACCACGAAGCCCACTGCC 62.643 66.667 0.00 0.00 42.71 4.85
183 184 4.383861 CAGAGCACGCCAGGAGCA 62.384 66.667 0.00 0.00 44.04 4.26
184 185 4.079850 AGAGCACGCCAGGAGCAG 62.080 66.667 0.00 0.00 44.04 4.24
189 190 4.711949 ACGCCAGGAGCAGCCAAG 62.712 66.667 0.00 0.00 44.04 3.61
191 192 4.357279 GCCAGGAGCAGCCAAGGT 62.357 66.667 0.00 0.00 42.97 3.50
192 193 2.045536 CCAGGAGCAGCCAAGGTC 60.046 66.667 0.00 0.00 40.02 3.85
193 194 2.435586 CAGGAGCAGCCAAGGTCG 60.436 66.667 0.00 0.00 40.02 4.79
194 195 2.925170 AGGAGCAGCCAAGGTCGT 60.925 61.111 0.00 0.00 40.02 4.34
195 196 2.032681 GGAGCAGCCAAGGTCGTT 59.967 61.111 0.00 0.00 36.90 3.85
196 197 2.328099 GGAGCAGCCAAGGTCGTTG 61.328 63.158 0.00 0.00 36.90 4.10
197 198 2.970974 GAGCAGCCAAGGTCGTTGC 61.971 63.158 0.00 0.00 34.45 4.17
198 199 4.389576 GCAGCCAAGGTCGTTGCG 62.390 66.667 0.00 0.00 34.45 4.85
199 200 4.389576 CAGCCAAGGTCGTTGCGC 62.390 66.667 0.00 0.00 34.45 6.09
200 201 4.927782 AGCCAAGGTCGTTGCGCA 62.928 61.111 5.66 5.66 35.76 6.09
201 202 4.683334 GCCAAGGTCGTTGCGCAC 62.683 66.667 11.12 4.51 34.33 5.34
216 217 3.403057 CACGCACCACCGAACGAG 61.403 66.667 0.00 0.00 0.00 4.18
219 220 3.414700 GCACCACCGAACGAGCAG 61.415 66.667 0.00 0.00 0.00 4.24
220 221 2.338620 CACCACCGAACGAGCAGA 59.661 61.111 0.00 0.00 0.00 4.26
221 222 1.300620 CACCACCGAACGAGCAGAA 60.301 57.895 0.00 0.00 0.00 3.02
222 223 1.300697 ACCACCGAACGAGCAGAAC 60.301 57.895 0.00 0.00 0.00 3.01
223 224 2.372690 CCACCGAACGAGCAGAACG 61.373 63.158 0.00 0.00 0.00 3.95
224 225 1.371267 CACCGAACGAGCAGAACGA 60.371 57.895 0.00 0.00 34.70 3.85
225 226 0.937699 CACCGAACGAGCAGAACGAA 60.938 55.000 0.00 0.00 34.70 3.85
226 227 0.663568 ACCGAACGAGCAGAACGAAG 60.664 55.000 0.00 0.00 34.70 3.79
227 228 1.344942 CCGAACGAGCAGAACGAAGG 61.345 60.000 0.00 0.00 34.70 3.46
228 229 0.386858 CGAACGAGCAGAACGAAGGA 60.387 55.000 0.00 0.00 34.70 3.36
229 230 1.779569 GAACGAGCAGAACGAAGGAA 58.220 50.000 0.00 0.00 34.70 3.36
230 231 1.456165 GAACGAGCAGAACGAAGGAAC 59.544 52.381 0.00 0.00 34.70 3.62
231 232 0.663568 ACGAGCAGAACGAAGGAACG 60.664 55.000 0.00 0.00 39.31 3.95
232 233 1.782181 GAGCAGAACGAAGGAACGC 59.218 57.895 0.00 0.00 36.70 4.84
233 234 1.945776 GAGCAGAACGAAGGAACGCG 61.946 60.000 3.53 3.53 36.70 6.01
234 235 2.019951 GCAGAACGAAGGAACGCGA 61.020 57.895 15.93 0.00 36.70 5.87
235 236 1.945776 GCAGAACGAAGGAACGCGAG 61.946 60.000 15.93 0.00 36.70 5.03
236 237 0.386858 CAGAACGAAGGAACGCGAGA 60.387 55.000 15.93 0.00 36.70 4.04
237 238 0.109689 AGAACGAAGGAACGCGAGAG 60.110 55.000 15.93 0.00 36.70 3.20
249 250 4.742201 CGAGAGCCCCACACCACG 62.742 72.222 0.00 0.00 0.00 4.94
256 257 4.308458 CCCACACCACGCGAGGAA 62.308 66.667 29.67 0.00 0.00 3.36
257 258 3.041940 CCACACCACGCGAGGAAC 61.042 66.667 29.67 0.00 0.00 3.62
258 259 3.403057 CACACCACGCGAGGAACG 61.403 66.667 29.67 17.92 45.66 3.95
259 260 3.598715 ACACCACGCGAGGAACGA 61.599 61.111 29.67 0.00 45.77 3.85
260 261 2.355363 CACCACGCGAGGAACGAA 60.355 61.111 29.67 0.00 45.77 3.85
261 262 2.049433 ACCACGCGAGGAACGAAG 60.049 61.111 29.67 0.54 45.77 3.79
263 264 2.087009 CCACGCGAGGAACGAAGTC 61.087 63.158 18.51 0.00 45.00 3.01
264 265 2.087009 CACGCGAGGAACGAAGTCC 61.087 63.158 15.93 0.00 45.00 3.85
265 266 2.874780 CGCGAGGAACGAAGTCCG 60.875 66.667 0.00 0.00 45.00 4.79
266 267 3.179939 GCGAGGAACGAAGTCCGC 61.180 66.667 0.00 0.00 45.00 5.54
267 268 2.506438 CGAGGAACGAAGTCCGCC 60.506 66.667 0.00 0.00 45.00 6.13
268 269 2.506438 GAGGAACGAAGTCCGCCG 60.506 66.667 0.00 0.00 45.00 6.46
269 270 4.736896 AGGAACGAAGTCCGCCGC 62.737 66.667 0.00 0.00 45.00 6.53
385 386 4.637489 CTCCCGAGGAGCGATGCG 62.637 72.222 6.97 0.00 43.29 4.73
387 388 4.637489 CCCGAGGAGCGATGCGAG 62.637 72.222 0.00 0.00 44.57 5.03
388 389 4.637489 CCGAGGAGCGATGCGAGG 62.637 72.222 0.00 0.00 44.57 4.63
389 390 4.637489 CGAGGAGCGATGCGAGGG 62.637 72.222 0.00 0.00 44.57 4.30
390 391 3.532155 GAGGAGCGATGCGAGGGT 61.532 66.667 0.00 0.00 0.00 4.34
391 392 3.492311 GAGGAGCGATGCGAGGGTC 62.492 68.421 0.00 0.00 0.00 4.46
392 393 3.532155 GGAGCGATGCGAGGGTCT 61.532 66.667 0.00 0.00 0.00 3.85
393 394 2.279120 GAGCGATGCGAGGGTCTG 60.279 66.667 0.00 0.00 0.00 3.51
394 395 3.069980 GAGCGATGCGAGGGTCTGT 62.070 63.158 0.00 0.00 0.00 3.41
395 396 2.583593 GCGATGCGAGGGTCTGTC 60.584 66.667 0.00 0.00 0.00 3.51
396 397 3.069980 GCGATGCGAGGGTCTGTCT 62.070 63.158 0.00 0.00 0.00 3.41
397 398 1.226802 CGATGCGAGGGTCTGTCTG 60.227 63.158 0.00 0.00 0.00 3.51
398 399 1.893786 GATGCGAGGGTCTGTCTGT 59.106 57.895 0.00 0.00 0.00 3.41
399 400 1.103803 GATGCGAGGGTCTGTCTGTA 58.896 55.000 0.00 0.00 0.00 2.74
400 401 1.066303 GATGCGAGGGTCTGTCTGTAG 59.934 57.143 0.00 0.00 0.00 2.74
401 402 0.965866 TGCGAGGGTCTGTCTGTAGG 60.966 60.000 0.00 0.00 0.00 3.18
402 403 0.680280 GCGAGGGTCTGTCTGTAGGA 60.680 60.000 0.00 0.00 0.00 2.94
403 404 1.835494 CGAGGGTCTGTCTGTAGGAA 58.165 55.000 0.00 0.00 0.00 3.36
404 405 2.168496 CGAGGGTCTGTCTGTAGGAAA 58.832 52.381 0.00 0.00 0.00 3.13
405 406 2.094649 CGAGGGTCTGTCTGTAGGAAAC 60.095 54.545 0.00 0.00 0.00 2.78
406 407 2.234168 GAGGGTCTGTCTGTAGGAAACC 59.766 54.545 0.00 0.00 0.00 3.27
407 408 1.067071 GGGTCTGTCTGTAGGAAACCG 60.067 57.143 0.00 0.00 0.00 4.44
408 409 1.617357 GGTCTGTCTGTAGGAAACCGT 59.383 52.381 0.00 0.00 0.00 4.83
409 410 2.036862 GGTCTGTCTGTAGGAAACCGTT 59.963 50.000 0.00 0.00 0.00 4.44
410 411 3.493873 GGTCTGTCTGTAGGAAACCGTTT 60.494 47.826 0.00 0.00 0.00 3.60
411 412 3.739810 GTCTGTCTGTAGGAAACCGTTTC 59.260 47.826 14.58 14.58 38.94 2.78
412 413 3.385433 TCTGTCTGTAGGAAACCGTTTCA 59.615 43.478 22.39 3.50 41.43 2.69
413 414 3.460103 TGTCTGTAGGAAACCGTTTCAC 58.540 45.455 22.39 14.53 41.43 3.18
414 415 2.473984 GTCTGTAGGAAACCGTTTCACG 59.526 50.000 22.39 11.08 41.43 4.35
415 416 2.361757 TCTGTAGGAAACCGTTTCACGA 59.638 45.455 22.39 12.68 46.05 4.35
416 417 2.472816 TGTAGGAAACCGTTTCACGAC 58.527 47.619 22.39 17.33 46.05 4.34
417 418 2.101249 TGTAGGAAACCGTTTCACGACT 59.899 45.455 22.39 13.71 46.05 4.18
418 419 2.320745 AGGAAACCGTTTCACGACTT 57.679 45.000 22.39 1.75 46.05 3.01
419 420 2.635714 AGGAAACCGTTTCACGACTTT 58.364 42.857 22.39 0.00 46.05 2.66
420 421 3.795877 AGGAAACCGTTTCACGACTTTA 58.204 40.909 22.39 0.00 46.05 1.85
421 422 4.190772 AGGAAACCGTTTCACGACTTTAA 58.809 39.130 22.39 0.00 46.05 1.52
422 423 4.818005 AGGAAACCGTTTCACGACTTTAAT 59.182 37.500 22.39 0.00 46.05 1.40
423 424 5.049886 AGGAAACCGTTTCACGACTTTAATC 60.050 40.000 22.39 3.98 46.05 1.75
424 425 5.277442 GGAAACCGTTTCACGACTTTAATCA 60.277 40.000 22.39 0.00 46.05 2.57
425 426 5.738118 AACCGTTTCACGACTTTAATCAA 57.262 34.783 0.00 0.00 46.05 2.57
426 427 5.934935 ACCGTTTCACGACTTTAATCAAT 57.065 34.783 0.00 0.00 46.05 2.57
427 428 6.308371 ACCGTTTCACGACTTTAATCAATT 57.692 33.333 0.00 0.00 46.05 2.32
428 429 6.731164 ACCGTTTCACGACTTTAATCAATTT 58.269 32.000 0.00 0.00 46.05 1.82
429 430 6.854381 ACCGTTTCACGACTTTAATCAATTTC 59.146 34.615 0.00 0.00 46.05 2.17
430 431 6.304683 CCGTTTCACGACTTTAATCAATTTCC 59.695 38.462 0.00 0.00 46.05 3.13
431 432 6.853872 CGTTTCACGACTTTAATCAATTTCCA 59.146 34.615 0.00 0.00 46.05 3.53
432 433 7.059488 CGTTTCACGACTTTAATCAATTTCCAG 59.941 37.037 0.00 0.00 46.05 3.86
433 434 7.504924 TTCACGACTTTAATCAATTTCCAGT 57.495 32.000 0.00 0.00 0.00 4.00
434 435 6.898041 TCACGACTTTAATCAATTTCCAGTG 58.102 36.000 0.00 0.00 0.00 3.66
435 436 6.485313 TCACGACTTTAATCAATTTCCAGTGT 59.515 34.615 0.00 0.00 0.00 3.55
436 437 6.578545 CACGACTTTAATCAATTTCCAGTGTG 59.421 38.462 0.00 0.00 0.00 3.82
437 438 6.262273 ACGACTTTAATCAATTTCCAGTGTGT 59.738 34.615 0.00 0.00 0.00 3.72
438 439 7.442969 ACGACTTTAATCAATTTCCAGTGTGTA 59.557 33.333 0.00 0.00 0.00 2.90
439 440 7.957484 CGACTTTAATCAATTTCCAGTGTGTAG 59.043 37.037 0.00 0.00 0.00 2.74
440 441 7.593825 ACTTTAATCAATTTCCAGTGTGTAGC 58.406 34.615 0.00 0.00 0.00 3.58
441 442 7.230510 ACTTTAATCAATTTCCAGTGTGTAGCA 59.769 33.333 0.00 0.00 0.00 3.49
442 443 5.633830 AATCAATTTCCAGTGTGTAGCAG 57.366 39.130 0.00 0.00 0.00 4.24
443 444 3.411446 TCAATTTCCAGTGTGTAGCAGG 58.589 45.455 0.00 0.00 0.00 4.85
444 445 3.149196 CAATTTCCAGTGTGTAGCAGGT 58.851 45.455 0.00 0.00 0.00 4.00
445 446 3.508845 ATTTCCAGTGTGTAGCAGGTT 57.491 42.857 0.00 0.00 0.00 3.50
446 447 2.254546 TTCCAGTGTGTAGCAGGTTG 57.745 50.000 0.00 0.00 0.00 3.77
447 448 1.128200 TCCAGTGTGTAGCAGGTTGT 58.872 50.000 0.00 0.00 0.00 3.32
448 449 1.488812 TCCAGTGTGTAGCAGGTTGTT 59.511 47.619 0.00 0.00 0.00 2.83
449 450 2.092646 TCCAGTGTGTAGCAGGTTGTTT 60.093 45.455 0.00 0.00 0.00 2.83
450 451 2.687935 CCAGTGTGTAGCAGGTTGTTTT 59.312 45.455 0.00 0.00 0.00 2.43
451 452 3.880490 CCAGTGTGTAGCAGGTTGTTTTA 59.120 43.478 0.00 0.00 0.00 1.52
452 453 4.261031 CCAGTGTGTAGCAGGTTGTTTTAC 60.261 45.833 0.00 0.00 0.00 2.01
453 454 4.574828 CAGTGTGTAGCAGGTTGTTTTACT 59.425 41.667 0.00 0.00 0.00 2.24
454 455 4.814771 AGTGTGTAGCAGGTTGTTTTACTC 59.185 41.667 0.00 0.00 0.00 2.59
455 456 4.573201 GTGTGTAGCAGGTTGTTTTACTCA 59.427 41.667 0.00 0.00 0.00 3.41
456 457 4.573201 TGTGTAGCAGGTTGTTTTACTCAC 59.427 41.667 0.00 0.00 0.00 3.51
457 458 4.024302 GTGTAGCAGGTTGTTTTACTCACC 60.024 45.833 0.00 0.00 0.00 4.02
458 459 3.577805 AGCAGGTTGTTTTACTCACCT 57.422 42.857 0.00 0.00 0.00 4.00
459 460 4.699925 AGCAGGTTGTTTTACTCACCTA 57.300 40.909 0.00 0.00 0.00 3.08
460 461 5.242795 AGCAGGTTGTTTTACTCACCTAT 57.757 39.130 0.00 0.00 0.00 2.57
461 462 5.631119 AGCAGGTTGTTTTACTCACCTATT 58.369 37.500 0.00 0.00 0.00 1.73
462 463 6.068670 AGCAGGTTGTTTTACTCACCTATTT 58.931 36.000 0.00 0.00 0.00 1.40
463 464 6.549736 AGCAGGTTGTTTTACTCACCTATTTT 59.450 34.615 0.00 0.00 0.00 1.82
464 465 6.640907 GCAGGTTGTTTTACTCACCTATTTTG 59.359 38.462 0.00 0.00 0.00 2.44
465 466 6.640907 CAGGTTGTTTTACTCACCTATTTTGC 59.359 38.462 0.00 0.00 0.00 3.68
466 467 5.627780 GGTTGTTTTACTCACCTATTTTGCG 59.372 40.000 0.00 0.00 0.00 4.85
467 468 6.203647 GTTGTTTTACTCACCTATTTTGCGT 58.796 36.000 0.00 0.00 0.00 5.24
468 469 5.992729 TGTTTTACTCACCTATTTTGCGTC 58.007 37.500 0.00 0.00 0.00 5.19
469 470 5.049267 TGTTTTACTCACCTATTTTGCGTCC 60.049 40.000 0.00 0.00 0.00 4.79
470 471 2.109425 ACTCACCTATTTTGCGTCCC 57.891 50.000 0.00 0.00 0.00 4.46
471 472 1.628846 ACTCACCTATTTTGCGTCCCT 59.371 47.619 0.00 0.00 0.00 4.20
472 473 2.835764 ACTCACCTATTTTGCGTCCCTA 59.164 45.455 0.00 0.00 0.00 3.53
473 474 3.262405 ACTCACCTATTTTGCGTCCCTAA 59.738 43.478 0.00 0.00 0.00 2.69
474 475 4.258543 CTCACCTATTTTGCGTCCCTAAA 58.741 43.478 0.00 0.00 0.00 1.85
475 476 4.850680 TCACCTATTTTGCGTCCCTAAAT 58.149 39.130 0.00 0.00 34.19 1.40
476 477 5.258051 TCACCTATTTTGCGTCCCTAAATT 58.742 37.500 0.00 0.00 32.47 1.82
477 478 5.712917 TCACCTATTTTGCGTCCCTAAATTT 59.287 36.000 0.00 0.00 32.47 1.82
478 479 6.885376 TCACCTATTTTGCGTCCCTAAATTTA 59.115 34.615 0.00 0.00 32.47 1.40
479 480 7.393796 TCACCTATTTTGCGTCCCTAAATTTAA 59.606 33.333 0.00 0.00 32.47 1.52
480 481 8.194769 CACCTATTTTGCGTCCCTAAATTTAAT 58.805 33.333 0.00 0.00 32.47 1.40
481 482 8.410912 ACCTATTTTGCGTCCCTAAATTTAATC 58.589 33.333 0.00 0.00 32.47 1.75
482 483 8.410141 CCTATTTTGCGTCCCTAAATTTAATCA 58.590 33.333 0.00 0.00 32.47 2.57
483 484 9.796120 CTATTTTGCGTCCCTAAATTTAATCAA 57.204 29.630 0.00 0.00 32.47 2.57
485 486 9.665719 ATTTTGCGTCCCTAAATTTAATCAATT 57.334 25.926 0.00 0.00 36.57 2.32
486 487 9.495572 TTTTGCGTCCCTAAATTTAATCAATTT 57.504 25.926 0.00 0.00 45.45 1.82
487 488 8.696410 TTGCGTCCCTAAATTTAATCAATTTC 57.304 30.769 0.00 0.00 43.00 2.17
488 489 7.262048 TGCGTCCCTAAATTTAATCAATTTCC 58.738 34.615 0.00 0.00 43.00 3.13
489 490 7.093727 TGCGTCCCTAAATTTAATCAATTTCCA 60.094 33.333 0.00 0.00 43.00 3.53
490 491 7.435192 GCGTCCCTAAATTTAATCAATTTCCAG 59.565 37.037 0.00 0.00 43.00 3.86
491 492 7.435192 CGTCCCTAAATTTAATCAATTTCCAGC 59.565 37.037 0.00 0.00 43.00 4.85
492 493 8.257306 GTCCCTAAATTTAATCAATTTCCAGCA 58.743 33.333 0.00 0.00 43.00 4.41
493 494 8.820831 TCCCTAAATTTAATCAATTTCCAGCAA 58.179 29.630 0.00 0.00 43.00 3.91
494 495 9.447157 CCCTAAATTTAATCAATTTCCAGCAAA 57.553 29.630 0.00 0.00 43.00 3.68
510 511 8.915057 TTCCAGCAAAATTTAATCAATTTCCA 57.085 26.923 0.00 0.00 43.20 3.53
511 512 8.550710 TCCAGCAAAATTTAATCAATTTCCAG 57.449 30.769 0.00 0.00 43.20 3.86
512 513 7.119553 TCCAGCAAAATTTAATCAATTTCCAGC 59.880 33.333 0.00 0.00 43.20 4.85
513 514 6.957077 CAGCAAAATTTAATCAATTTCCAGCG 59.043 34.615 0.00 0.00 43.20 5.18
514 515 6.650390 AGCAAAATTTAATCAATTTCCAGCGT 59.350 30.769 0.00 0.00 43.20 5.07
515 516 6.737750 GCAAAATTTAATCAATTTCCAGCGTG 59.262 34.615 0.00 0.00 43.20 5.34
516 517 7.571059 GCAAAATTTAATCAATTTCCAGCGTGT 60.571 33.333 0.00 0.00 43.20 4.49
517 518 8.920665 CAAAATTTAATCAATTTCCAGCGTGTA 58.079 29.630 0.00 0.00 43.20 2.90
518 519 8.687824 AAATTTAATCAATTTCCAGCGTGTAG 57.312 30.769 0.00 0.00 40.52 2.74
519 520 6.751888 AATTTAATCAATTTCCAGCGTGTAGC 59.248 34.615 0.00 0.00 37.76 3.58
520 521 7.576666 AATTTAATCAATTTCCAGCGTGTAGCA 60.577 33.333 0.00 0.00 39.18 3.49
533 534 3.897325 CGTGTAGCAAGTTGTCTACTCA 58.103 45.455 24.79 12.48 35.54 3.41
534 535 3.669122 CGTGTAGCAAGTTGTCTACTCAC 59.331 47.826 24.79 18.62 35.54 3.51
535 536 3.988517 GTGTAGCAAGTTGTCTACTCACC 59.011 47.826 24.79 13.98 35.54 4.02
536 537 3.895656 TGTAGCAAGTTGTCTACTCACCT 59.104 43.478 24.79 8.33 35.54 4.00
537 538 5.048224 GTGTAGCAAGTTGTCTACTCACCTA 60.048 44.000 24.79 11.03 35.54 3.08
538 539 5.715279 TGTAGCAAGTTGTCTACTCACCTAT 59.285 40.000 24.79 0.00 35.54 2.57
539 540 5.746990 AGCAAGTTGTCTACTCACCTATT 57.253 39.130 4.48 0.00 35.54 1.73
540 541 6.115448 AGCAAGTTGTCTACTCACCTATTT 57.885 37.500 4.48 0.00 35.54 1.40
541 542 6.534634 AGCAAGTTGTCTACTCACCTATTTT 58.465 36.000 4.48 0.00 35.54 1.82
542 543 6.428159 AGCAAGTTGTCTACTCACCTATTTTG 59.572 38.462 4.48 0.00 35.54 2.44
543 544 6.603095 CAAGTTGTCTACTCACCTATTTTGC 58.397 40.000 0.00 0.00 35.54 3.68
544 545 4.929808 AGTTGTCTACTCACCTATTTTGCG 59.070 41.667 0.00 0.00 28.23 4.85
545 546 4.794278 TGTCTACTCACCTATTTTGCGA 57.206 40.909 0.00 0.00 0.00 5.10
546 547 4.491676 TGTCTACTCACCTATTTTGCGAC 58.508 43.478 0.00 0.00 0.00 5.19
547 548 3.864003 GTCTACTCACCTATTTTGCGACC 59.136 47.826 0.00 0.00 0.00 4.79
548 549 2.851263 ACTCACCTATTTTGCGACCA 57.149 45.000 0.00 0.00 0.00 4.02
549 550 3.350219 ACTCACCTATTTTGCGACCAT 57.650 42.857 0.00 0.00 0.00 3.55
550 551 4.481368 ACTCACCTATTTTGCGACCATA 57.519 40.909 0.00 0.00 0.00 2.74
551 552 5.036117 ACTCACCTATTTTGCGACCATAT 57.964 39.130 0.00 0.00 0.00 1.78
552 553 5.437060 ACTCACCTATTTTGCGACCATATT 58.563 37.500 0.00 0.00 0.00 1.28
553 554 5.885912 ACTCACCTATTTTGCGACCATATTT 59.114 36.000 0.00 0.00 0.00 1.40
554 555 7.051623 ACTCACCTATTTTGCGACCATATTTA 58.948 34.615 0.00 0.00 0.00 1.40
555 556 7.012044 ACTCACCTATTTTGCGACCATATTTAC 59.988 37.037 0.00 0.00 0.00 2.01
556 557 6.018588 TCACCTATTTTGCGACCATATTTACG 60.019 38.462 0.00 0.00 0.00 3.18
557 558 6.018588 CACCTATTTTGCGACCATATTTACGA 60.019 38.462 0.00 0.00 0.00 3.43
558 559 6.708949 ACCTATTTTGCGACCATATTTACGAT 59.291 34.615 0.00 0.00 0.00 3.73
559 560 7.015289 CCTATTTTGCGACCATATTTACGATG 58.985 38.462 0.00 0.00 0.00 3.84
560 561 6.612247 ATTTTGCGACCATATTTACGATGA 57.388 33.333 0.00 0.00 0.00 2.92
561 562 6.612247 TTTTGCGACCATATTTACGATGAT 57.388 33.333 0.00 0.00 0.00 2.45
562 563 7.716768 TTTTGCGACCATATTTACGATGATA 57.283 32.000 0.00 0.00 0.00 2.15
563 564 7.716768 TTTGCGACCATATTTACGATGATAA 57.283 32.000 0.00 0.00 0.00 1.75
564 565 7.716768 TTGCGACCATATTTACGATGATAAA 57.283 32.000 0.00 0.00 0.00 1.40
565 566 7.716768 TGCGACCATATTTACGATGATAAAA 57.283 32.000 0.00 0.00 0.00 1.52
566 567 7.569297 TGCGACCATATTTACGATGATAAAAC 58.431 34.615 0.00 0.00 0.00 2.43
567 568 7.439955 TGCGACCATATTTACGATGATAAAACT 59.560 33.333 0.00 0.00 0.00 2.66
568 569 8.280497 GCGACCATATTTACGATGATAAAACTT 58.720 33.333 0.00 0.00 0.00 2.66
569 570 9.580916 CGACCATATTTACGATGATAAAACTTG 57.419 33.333 0.00 0.00 0.00 3.16
570 571 9.878599 GACCATATTTACGATGATAAAACTTGG 57.121 33.333 0.00 0.00 32.77 3.61
571 572 9.621629 ACCATATTTACGATGATAAAACTTGGA 57.378 29.630 0.00 0.00 31.90 3.53
575 576 6.838198 TTACGATGATAAAACTTGGATCCG 57.162 37.500 7.39 0.00 0.00 4.18
576 577 5.018539 ACGATGATAAAACTTGGATCCGA 57.981 39.130 7.39 3.96 0.00 4.55
577 578 5.050490 ACGATGATAAAACTTGGATCCGAG 58.950 41.667 25.34 25.34 0.00 4.63
578 579 4.084328 CGATGATAAAACTTGGATCCGAGC 60.084 45.833 26.64 11.30 0.00 5.03
579 580 4.487714 TGATAAAACTTGGATCCGAGCT 57.512 40.909 26.64 13.92 0.00 4.09
580 581 5.607939 TGATAAAACTTGGATCCGAGCTA 57.392 39.130 26.64 16.34 0.00 3.32
581 582 5.357257 TGATAAAACTTGGATCCGAGCTAC 58.643 41.667 26.64 13.48 0.00 3.58
582 583 3.983044 AAAACTTGGATCCGAGCTACT 57.017 42.857 26.64 6.47 0.00 2.57
583 584 3.528597 AAACTTGGATCCGAGCTACTC 57.471 47.619 26.64 0.00 0.00 2.59
584 585 2.445682 ACTTGGATCCGAGCTACTCT 57.554 50.000 26.64 5.36 0.00 3.24
585 586 2.741145 ACTTGGATCCGAGCTACTCTT 58.259 47.619 26.64 4.63 0.00 2.85
586 587 3.899726 ACTTGGATCCGAGCTACTCTTA 58.100 45.455 26.64 0.00 0.00 2.10
587 588 4.475345 ACTTGGATCCGAGCTACTCTTAT 58.525 43.478 26.64 3.17 0.00 1.73
588 589 4.896482 ACTTGGATCCGAGCTACTCTTATT 59.104 41.667 26.64 2.44 0.00 1.40
589 590 6.069331 ACTTGGATCCGAGCTACTCTTATTA 58.931 40.000 26.64 0.00 0.00 0.98
590 591 6.550108 ACTTGGATCCGAGCTACTCTTATTAA 59.450 38.462 26.64 0.00 0.00 1.40
591 592 7.233757 ACTTGGATCCGAGCTACTCTTATTAAT 59.766 37.037 26.64 1.29 0.00 1.40
592 593 8.645814 TTGGATCCGAGCTACTCTTATTAATA 57.354 34.615 7.39 0.00 0.00 0.98
593 594 8.824756 TGGATCCGAGCTACTCTTATTAATAT 57.175 34.615 7.39 0.00 0.00 1.28
594 595 8.904834 TGGATCCGAGCTACTCTTATTAATATC 58.095 37.037 7.39 0.00 0.00 1.63
595 596 8.904834 GGATCCGAGCTACTCTTATTAATATCA 58.095 37.037 0.00 0.00 0.00 2.15
596 597 9.944663 GATCCGAGCTACTCTTATTAATATCAG 57.055 37.037 0.00 0.00 0.00 2.90
597 598 9.688091 ATCCGAGCTACTCTTATTAATATCAGA 57.312 33.333 0.00 0.00 0.00 3.27
598 599 9.516546 TCCGAGCTACTCTTATTAATATCAGAA 57.483 33.333 0.00 0.00 0.00 3.02
624 625 3.849563 TTTACATTATGGGACGGAGGG 57.150 47.619 0.00 0.00 0.00 4.30
632 633 0.324091 TGGGACGGAGGGAGTACTTC 60.324 60.000 0.00 0.00 0.00 3.01
656 657 3.557228 ATCCTTCACATTCTCAGAGCC 57.443 47.619 0.00 0.00 0.00 4.70
661 662 3.777106 TCACATTCTCAGAGCCAACTT 57.223 42.857 0.00 0.00 0.00 2.66
663 664 3.071457 TCACATTCTCAGAGCCAACTTCA 59.929 43.478 0.00 0.00 0.00 3.02
672 673 1.531602 GCCAACTTCAAGGTGCCCT 60.532 57.895 0.00 0.00 29.64 5.19
696 697 2.168936 ACGACATAGAGAGACGAGGTCT 59.831 50.000 0.00 0.00 46.42 3.85
705 706 0.240411 AGACGAGGTCTTGCACGTAC 59.760 55.000 0.00 0.00 40.28 3.67
718 719 3.904571 TGCACGTACGAGTAAAATCTGT 58.095 40.909 24.41 0.00 0.00 3.41
743 744 5.756950 TTCTAAGCAAATACGTGTTCTCG 57.243 39.130 0.00 0.00 0.00 4.04
748 749 3.183775 AGCAAATACGTGTTCTCGTTCAC 59.816 43.478 0.00 0.00 43.80 3.18
758 759 1.139095 CTCGTTCACTCCTACCGGC 59.861 63.158 0.00 0.00 0.00 6.13
760 761 2.348888 CGTTCACTCCTACCGGCCT 61.349 63.158 0.00 0.00 0.00 5.19
761 762 1.516423 GTTCACTCCTACCGGCCTC 59.484 63.158 0.00 0.00 0.00 4.70
803 805 1.692411 AGCCAAAACTGTCCTCAACC 58.308 50.000 0.00 0.00 0.00 3.77
805 807 0.310854 CCAAAACTGTCCTCAACCGC 59.689 55.000 0.00 0.00 0.00 5.68
822 824 1.164411 CGCCTTCCATTTGTACAGCA 58.836 50.000 0.00 0.00 0.00 4.41
958 988 1.374631 CTAGCGAACCACAGCAGCA 60.375 57.895 0.00 0.00 35.48 4.41
987 1017 1.497286 ACCAGGAACCAGCAAACCTTA 59.503 47.619 0.00 0.00 0.00 2.69
994 1024 6.202762 CAGGAACCAGCAAACCTTAATTTTTC 59.797 38.462 0.00 0.00 0.00 2.29
996 1026 5.622346 ACCAGCAAACCTTAATTTTTCCA 57.378 34.783 0.00 0.00 0.00 3.53
1498 1528 2.778679 GCATCAGCGACGAACACC 59.221 61.111 0.00 0.00 0.00 4.16
1499 1529 2.027073 GCATCAGCGACGAACACCA 61.027 57.895 0.00 0.00 0.00 4.17
1500 1530 1.781555 CATCAGCGACGAACACCAC 59.218 57.895 0.00 0.00 0.00 4.16
1551 1581 3.745803 GGGCAGCAGCAGCAAGAC 61.746 66.667 12.41 0.00 45.49 3.01
1677 1707 0.385348 CTCGAGACGCGGATGATGAG 60.385 60.000 12.47 6.00 41.33 2.90
1713 1743 2.363172 GGAGGAGGAAGAAGCGCCT 61.363 63.158 2.29 0.00 37.18 5.52
2036 2069 1.153309 TCAGGGATGCGTGCATGAG 60.153 57.895 10.92 0.00 36.70 2.90
2085 2118 1.066430 GTGGTAGATTGCGTTGAGGGA 60.066 52.381 0.00 0.00 0.00 4.20
2212 2245 0.837691 TGTGGTGATGTGGAGCTCCT 60.838 55.000 32.28 13.87 36.82 3.69
2217 2250 2.079925 GTGATGTGGAGCTCCTTTGAC 58.920 52.381 32.28 22.13 36.82 3.18
2225 2258 0.839853 AGCTCCTTTGACCTGGCTCT 60.840 55.000 0.00 0.00 0.00 4.09
2282 2315 8.546597 AAATTAATTCGTGAAAAATTCCCCTG 57.453 30.769 0.10 0.00 0.00 4.45
2402 3102 8.632679 AGTCAAGCATCTTTAAGTTTGATCAAA 58.367 29.630 16.91 16.91 0.00 2.69
2466 3167 8.729805 AAGGATCAGATCTACAACTTCAAATC 57.270 34.615 10.36 0.00 0.00 2.17
2472 3173 7.939039 TCAGATCTACAACTTCAAATCAGGTTT 59.061 33.333 0.00 0.00 0.00 3.27
2505 3206 1.532007 GAAATGTTAACGCCCACACGA 59.468 47.619 0.26 0.00 36.70 4.35
2532 3233 3.529341 TTGCATCTCGCCCACACGT 62.529 57.895 0.00 0.00 41.33 4.49
2648 3349 0.035820 ACGGCCGTTTCACCACATAT 60.036 50.000 28.70 0.00 0.00 1.78
2658 3359 0.820891 CACCACATATGAGGGGCTGC 60.821 60.000 21.40 0.00 0.00 5.25
2686 3387 2.664851 TTCAGCAGTTCGCCCACG 60.665 61.111 0.00 0.00 44.04 4.94
2932 3635 7.276658 CGTAAGCAGATGACAACTCTCTTTTAT 59.723 37.037 3.24 0.00 0.00 1.40
3044 3747 4.522789 GGCAACTCTTCCTTTTTACATGGA 59.477 41.667 0.00 0.00 0.00 3.41
3048 3751 6.313744 ACTCTTCCTTTTTACATGGAAACG 57.686 37.500 1.47 0.00 38.06 3.60
3061 3765 2.440247 AAACGGCCCTAGCATGCC 60.440 61.111 15.66 0.00 44.41 4.40
3119 3823 6.428771 GTGTTAGTATGTGGCAACTCCTAAAA 59.571 38.462 0.00 0.00 35.26 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.467084 TGTTCCATCGGGCTCGCC 62.467 66.667 0.00 0.00 36.13 5.54
43 44 3.195698 GTGTTCCATCGGGCTCGC 61.196 66.667 0.00 0.00 36.13 5.03
44 45 2.511600 GGTGTTCCATCGGGCTCG 60.512 66.667 0.00 0.00 37.82 5.03
45 46 2.511600 CGGTGTTCCATCGGGCTC 60.512 66.667 0.00 0.00 34.00 4.70
46 47 4.778143 GCGGTGTTCCATCGGGCT 62.778 66.667 0.00 0.00 38.53 5.19
48 49 4.402528 TGGCGGTGTTCCATCGGG 62.403 66.667 0.00 0.00 38.53 5.14
49 50 3.124921 GTGGCGGTGTTCCATCGG 61.125 66.667 0.00 0.00 38.53 4.18
50 51 2.233605 TAGGTGGCGGTGTTCCATCG 62.234 60.000 0.00 0.00 39.66 3.84
51 52 0.462047 CTAGGTGGCGGTGTTCCATC 60.462 60.000 0.00 0.00 35.81 3.51
52 53 1.602237 CTAGGTGGCGGTGTTCCAT 59.398 57.895 0.00 0.00 35.81 3.41
53 54 2.589157 CCTAGGTGGCGGTGTTCCA 61.589 63.158 0.00 0.00 0.00 3.53
54 55 2.267961 CCTAGGTGGCGGTGTTCC 59.732 66.667 0.00 0.00 0.00 3.62
55 56 1.079336 GACCTAGGTGGCGGTGTTC 60.079 63.158 22.10 0.00 40.22 3.18
56 57 2.590114 GGACCTAGGTGGCGGTGTT 61.590 63.158 22.10 0.00 40.22 3.32
57 58 3.001406 GGACCTAGGTGGCGGTGT 61.001 66.667 22.10 0.00 40.22 4.16
58 59 3.000819 TGGACCTAGGTGGCGGTG 61.001 66.667 22.10 0.00 40.22 4.94
59 60 3.001406 GTGGACCTAGGTGGCGGT 61.001 66.667 22.10 0.00 40.22 5.68
60 61 3.782443 GGTGGACCTAGGTGGCGG 61.782 72.222 22.10 0.00 40.22 6.13
61 62 3.782443 GGGTGGACCTAGGTGGCG 61.782 72.222 22.10 0.00 40.22 5.69
62 63 3.408853 GGGGTGGACCTAGGTGGC 61.409 72.222 22.10 5.46 40.22 5.01
63 64 2.691252 GGGGGTGGACCTAGGTGG 60.691 72.222 22.10 0.00 40.03 4.61
107 108 4.962836 CTGGATGCGGGATGGGCC 62.963 72.222 0.00 0.00 0.00 5.80
108 109 3.839353 CTCTGGATGCGGGATGGGC 62.839 68.421 0.00 0.00 0.00 5.36
109 110 2.429058 CTCTGGATGCGGGATGGG 59.571 66.667 0.00 0.00 0.00 4.00
110 111 2.429058 CCTCTGGATGCGGGATGG 59.571 66.667 0.00 0.00 0.00 3.51
111 112 2.429058 CCCTCTGGATGCGGGATG 59.571 66.667 0.00 0.00 43.34 3.51
112 113 2.851102 CCCCTCTGGATGCGGGAT 60.851 66.667 0.00 0.00 43.34 3.85
113 114 4.414956 ACCCCTCTGGATGCGGGA 62.415 66.667 1.89 0.00 43.34 5.14
114 115 3.866582 GACCCCTCTGGATGCGGG 61.867 72.222 0.00 0.00 40.37 6.13
115 116 3.866582 GGACCCCTCTGGATGCGG 61.867 72.222 0.00 0.00 38.00 5.69
116 117 3.083349 TGGACCCCTCTGGATGCG 61.083 66.667 0.00 0.00 38.00 4.73
117 118 2.750657 CCTGGACCCCTCTGGATGC 61.751 68.421 0.00 0.00 38.00 3.91
118 119 1.003442 TCCTGGACCCCTCTGGATG 59.997 63.158 0.00 0.00 38.00 3.51
119 120 1.003573 GTCCTGGACCCCTCTGGAT 59.996 63.158 16.14 0.00 38.00 3.41
120 121 2.450243 GTCCTGGACCCCTCTGGA 59.550 66.667 16.14 0.00 38.00 3.86
121 122 3.077556 CGTCCTGGACCCCTCTGG 61.078 72.222 20.68 1.32 41.37 3.86
122 123 2.037367 TCGTCCTGGACCCCTCTG 59.963 66.667 20.68 6.07 0.00 3.35
123 124 2.037527 GTCGTCCTGGACCCCTCT 59.962 66.667 20.68 0.00 0.00 3.69
129 130 1.080705 CTTCGTGGTCGTCCTGGAC 60.081 63.158 16.99 16.99 38.33 4.02
130 131 2.927580 GCTTCGTGGTCGTCCTGGA 61.928 63.158 0.00 0.00 38.33 3.86
131 132 2.432628 GCTTCGTGGTCGTCCTGG 60.433 66.667 0.00 0.00 38.33 4.45
132 133 2.432628 GGCTTCGTGGTCGTCCTG 60.433 66.667 0.00 0.00 38.33 3.86
133 134 3.692406 GGGCTTCGTGGTCGTCCT 61.692 66.667 0.00 0.00 38.33 3.85
134 135 3.998672 TGGGCTTCGTGGTCGTCC 61.999 66.667 0.00 0.00 38.33 4.79
135 136 2.737376 GTGGGCTTCGTGGTCGTC 60.737 66.667 0.00 0.00 38.33 4.20
136 137 3.231736 AGTGGGCTTCGTGGTCGT 61.232 61.111 0.00 0.00 38.33 4.34
137 138 2.738521 CAGTGGGCTTCGTGGTCG 60.739 66.667 0.00 0.00 38.55 4.79
138 139 3.050275 GCAGTGGGCTTCGTGGTC 61.050 66.667 0.00 0.00 40.25 4.02
139 140 4.643387 GGCAGTGGGCTTCGTGGT 62.643 66.667 0.00 0.00 44.01 4.16
166 167 4.383861 TGCTCCTGGCGTGCTCTG 62.384 66.667 7.45 0.00 45.43 3.35
167 168 4.079850 CTGCTCCTGGCGTGCTCT 62.080 66.667 7.45 0.00 45.43 4.09
172 173 4.711949 CTTGGCTGCTCCTGGCGT 62.712 66.667 0.00 0.00 45.43 5.68
174 175 4.357279 ACCTTGGCTGCTCCTGGC 62.357 66.667 0.00 0.00 42.22 4.85
175 176 2.045536 GACCTTGGCTGCTCCTGG 60.046 66.667 0.00 0.00 35.99 4.45
176 177 2.435586 CGACCTTGGCTGCTCCTG 60.436 66.667 0.00 0.00 35.26 3.86
177 178 2.520536 AACGACCTTGGCTGCTCCT 61.521 57.895 0.00 0.00 35.26 3.69
178 179 2.032681 AACGACCTTGGCTGCTCC 59.967 61.111 0.00 0.00 0.00 4.70
179 180 2.970974 GCAACGACCTTGGCTGCTC 61.971 63.158 0.00 0.00 0.00 4.26
180 181 2.980233 GCAACGACCTTGGCTGCT 60.980 61.111 0.00 0.00 0.00 4.24
181 182 4.389576 CGCAACGACCTTGGCTGC 62.390 66.667 0.00 0.00 0.00 5.25
182 183 4.389576 GCGCAACGACCTTGGCTG 62.390 66.667 0.30 0.00 0.00 4.85
183 184 4.927782 TGCGCAACGACCTTGGCT 62.928 61.111 8.16 0.00 31.08 4.75
184 185 4.683334 GTGCGCAACGACCTTGGC 62.683 66.667 14.00 0.00 0.00 4.52
199 200 3.403057 CTCGTTCGGTGGTGCGTG 61.403 66.667 0.00 0.00 0.00 5.34
202 203 3.414700 CTGCTCGTTCGGTGGTGC 61.415 66.667 0.00 0.00 0.00 5.01
203 204 1.300620 TTCTGCTCGTTCGGTGGTG 60.301 57.895 0.00 0.00 0.00 4.17
204 205 1.300697 GTTCTGCTCGTTCGGTGGT 60.301 57.895 0.00 0.00 0.00 4.16
205 206 2.372690 CGTTCTGCTCGTTCGGTGG 61.373 63.158 0.00 0.00 0.00 4.61
206 207 0.937699 TTCGTTCTGCTCGTTCGGTG 60.938 55.000 0.00 0.00 0.00 4.94
207 208 0.663568 CTTCGTTCTGCTCGTTCGGT 60.664 55.000 0.00 0.00 0.00 4.69
208 209 1.344942 CCTTCGTTCTGCTCGTTCGG 61.345 60.000 0.00 0.00 0.00 4.30
209 210 0.386858 TCCTTCGTTCTGCTCGTTCG 60.387 55.000 0.00 0.00 0.00 3.95
210 211 1.456165 GTTCCTTCGTTCTGCTCGTTC 59.544 52.381 0.00 0.00 0.00 3.95
211 212 1.499049 GTTCCTTCGTTCTGCTCGTT 58.501 50.000 0.00 0.00 0.00 3.85
212 213 0.663568 CGTTCCTTCGTTCTGCTCGT 60.664 55.000 0.00 0.00 0.00 4.18
213 214 1.945776 GCGTTCCTTCGTTCTGCTCG 61.946 60.000 0.00 0.00 0.00 5.03
214 215 1.782181 GCGTTCCTTCGTTCTGCTC 59.218 57.895 0.00 0.00 0.00 4.26
215 216 2.022129 CGCGTTCCTTCGTTCTGCT 61.022 57.895 0.00 0.00 0.00 4.24
216 217 1.945776 CTCGCGTTCCTTCGTTCTGC 61.946 60.000 5.77 0.00 0.00 4.26
217 218 0.386858 TCTCGCGTTCCTTCGTTCTG 60.387 55.000 5.77 0.00 0.00 3.02
218 219 0.109689 CTCTCGCGTTCCTTCGTTCT 60.110 55.000 5.77 0.00 0.00 3.01
219 220 1.675524 GCTCTCGCGTTCCTTCGTTC 61.676 60.000 5.77 0.00 0.00 3.95
220 221 1.733399 GCTCTCGCGTTCCTTCGTT 60.733 57.895 5.77 0.00 0.00 3.85
221 222 2.126424 GCTCTCGCGTTCCTTCGT 60.126 61.111 5.77 0.00 0.00 3.85
222 223 2.881352 GGCTCTCGCGTTCCTTCG 60.881 66.667 5.77 0.00 36.88 3.79
223 224 2.509561 GGGCTCTCGCGTTCCTTC 60.510 66.667 5.77 0.00 36.88 3.46
224 225 4.083862 GGGGCTCTCGCGTTCCTT 62.084 66.667 5.77 0.00 36.88 3.36
227 228 4.373116 TGTGGGGCTCTCGCGTTC 62.373 66.667 5.77 0.00 36.88 3.95
228 229 4.681978 GTGTGGGGCTCTCGCGTT 62.682 66.667 5.77 0.00 36.88 4.84
232 233 4.742201 CGTGGTGTGGGGCTCTCG 62.742 72.222 0.00 0.00 0.00 4.04
239 240 4.308458 TTCCTCGCGTGGTGTGGG 62.308 66.667 25.10 8.56 0.00 4.61
240 241 3.041940 GTTCCTCGCGTGGTGTGG 61.042 66.667 25.10 10.20 0.00 4.17
241 242 3.403057 CGTTCCTCGCGTGGTGTG 61.403 66.667 25.10 12.80 0.00 3.82
242 243 3.141522 TTCGTTCCTCGCGTGGTGT 62.142 57.895 25.10 0.00 39.67 4.16
243 244 2.355363 TTCGTTCCTCGCGTGGTG 60.355 61.111 25.10 16.45 39.67 4.17
244 245 2.049433 CTTCGTTCCTCGCGTGGT 60.049 61.111 25.10 0.00 39.67 4.16
245 246 2.049433 ACTTCGTTCCTCGCGTGG 60.049 61.111 20.92 20.92 39.67 4.94
246 247 2.087009 GGACTTCGTTCCTCGCGTG 61.087 63.158 5.77 2.75 39.67 5.34
247 248 2.257676 GGACTTCGTTCCTCGCGT 59.742 61.111 5.77 0.00 39.67 6.01
248 249 2.874780 CGGACTTCGTTCCTCGCG 60.875 66.667 0.00 0.00 39.67 5.87
249 250 3.179939 GCGGACTTCGTTCCTCGC 61.180 66.667 0.00 0.00 41.72 5.03
250 251 2.506438 GGCGGACTTCGTTCCTCG 60.506 66.667 0.00 0.00 41.72 4.63
251 252 2.506438 CGGCGGACTTCGTTCCTC 60.506 66.667 0.00 0.00 41.72 3.71
252 253 4.736896 GCGGCGGACTTCGTTCCT 62.737 66.667 9.78 0.00 41.72 3.36
370 371 4.637489 CTCGCATCGCTCCTCGGG 62.637 72.222 0.00 0.00 39.05 5.14
371 372 4.637489 CCTCGCATCGCTCCTCGG 62.637 72.222 0.00 0.00 39.05 4.63
372 373 4.637489 CCCTCGCATCGCTCCTCG 62.637 72.222 0.00 0.00 40.15 4.63
373 374 3.492311 GACCCTCGCATCGCTCCTC 62.492 68.421 0.00 0.00 0.00 3.71
374 375 3.532155 GACCCTCGCATCGCTCCT 61.532 66.667 0.00 0.00 0.00 3.69
375 376 3.532155 AGACCCTCGCATCGCTCC 61.532 66.667 0.00 0.00 0.00 4.70
376 377 2.279120 CAGACCCTCGCATCGCTC 60.279 66.667 0.00 0.00 0.00 5.03
377 378 3.069980 GACAGACCCTCGCATCGCT 62.070 63.158 0.00 0.00 0.00 4.93
378 379 2.583593 GACAGACCCTCGCATCGC 60.584 66.667 0.00 0.00 0.00 4.58
379 380 1.226802 CAGACAGACCCTCGCATCG 60.227 63.158 0.00 0.00 0.00 3.84
380 381 1.066303 CTACAGACAGACCCTCGCATC 59.934 57.143 0.00 0.00 0.00 3.91
381 382 1.107114 CTACAGACAGACCCTCGCAT 58.893 55.000 0.00 0.00 0.00 4.73
382 383 0.965866 CCTACAGACAGACCCTCGCA 60.966 60.000 0.00 0.00 0.00 5.10
383 384 0.680280 TCCTACAGACAGACCCTCGC 60.680 60.000 0.00 0.00 0.00 5.03
384 385 1.835494 TTCCTACAGACAGACCCTCG 58.165 55.000 0.00 0.00 0.00 4.63
385 386 2.234168 GGTTTCCTACAGACAGACCCTC 59.766 54.545 0.00 0.00 0.00 4.30
386 387 2.258109 GGTTTCCTACAGACAGACCCT 58.742 52.381 0.00 0.00 0.00 4.34
387 388 1.067071 CGGTTTCCTACAGACAGACCC 60.067 57.143 0.00 0.00 0.00 4.46
388 389 1.617357 ACGGTTTCCTACAGACAGACC 59.383 52.381 0.00 0.00 0.00 3.85
389 390 3.382048 AACGGTTTCCTACAGACAGAC 57.618 47.619 0.00 0.00 0.00 3.51
390 391 3.385433 TGAAACGGTTTCCTACAGACAGA 59.615 43.478 25.99 5.25 38.90 3.41
391 392 3.493503 GTGAAACGGTTTCCTACAGACAG 59.506 47.826 25.99 0.00 38.90 3.51
392 393 3.460103 GTGAAACGGTTTCCTACAGACA 58.540 45.455 25.99 7.12 38.90 3.41
407 408 7.860872 ACTGGAAATTGATTAAAGTCGTGAAAC 59.139 33.333 0.00 0.00 0.00 2.78
408 409 7.860373 CACTGGAAATTGATTAAAGTCGTGAAA 59.140 33.333 0.00 0.00 0.00 2.69
409 410 7.012894 ACACTGGAAATTGATTAAAGTCGTGAA 59.987 33.333 0.00 0.00 0.00 3.18
410 411 6.485313 ACACTGGAAATTGATTAAAGTCGTGA 59.515 34.615 0.00 0.00 0.00 4.35
411 412 6.578545 CACACTGGAAATTGATTAAAGTCGTG 59.421 38.462 0.00 0.00 0.00 4.35
412 413 6.262273 ACACACTGGAAATTGATTAAAGTCGT 59.738 34.615 0.00 0.00 0.00 4.34
413 414 6.668323 ACACACTGGAAATTGATTAAAGTCG 58.332 36.000 0.00 0.00 0.00 4.18
414 415 7.750903 GCTACACACTGGAAATTGATTAAAGTC 59.249 37.037 0.00 0.00 0.00 3.01
415 416 7.230510 TGCTACACACTGGAAATTGATTAAAGT 59.769 33.333 0.00 0.00 0.00 2.66
416 417 7.592938 TGCTACACACTGGAAATTGATTAAAG 58.407 34.615 0.00 0.00 0.00 1.85
417 418 7.309133 CCTGCTACACACTGGAAATTGATTAAA 60.309 37.037 0.00 0.00 0.00 1.52
418 419 6.150976 CCTGCTACACACTGGAAATTGATTAA 59.849 38.462 0.00 0.00 0.00 1.40
419 420 5.647658 CCTGCTACACACTGGAAATTGATTA 59.352 40.000 0.00 0.00 0.00 1.75
420 421 4.460382 CCTGCTACACACTGGAAATTGATT 59.540 41.667 0.00 0.00 0.00 2.57
421 422 4.012374 CCTGCTACACACTGGAAATTGAT 58.988 43.478 0.00 0.00 0.00 2.57
422 423 3.181445 ACCTGCTACACACTGGAAATTGA 60.181 43.478 0.00 0.00 0.00 2.57
423 424 3.149196 ACCTGCTACACACTGGAAATTG 58.851 45.455 0.00 0.00 0.00 2.32
424 425 3.508845 ACCTGCTACACACTGGAAATT 57.491 42.857 0.00 0.00 0.00 1.82
425 426 3.149196 CAACCTGCTACACACTGGAAAT 58.851 45.455 0.00 0.00 0.00 2.17
426 427 2.092646 ACAACCTGCTACACACTGGAAA 60.093 45.455 0.00 0.00 0.00 3.13
427 428 1.488812 ACAACCTGCTACACACTGGAA 59.511 47.619 0.00 0.00 0.00 3.53
428 429 1.128200 ACAACCTGCTACACACTGGA 58.872 50.000 0.00 0.00 0.00 3.86
429 430 1.967319 AACAACCTGCTACACACTGG 58.033 50.000 0.00 0.00 0.00 4.00
430 431 4.574828 AGTAAAACAACCTGCTACACACTG 59.425 41.667 0.00 0.00 0.00 3.66
431 432 4.777463 AGTAAAACAACCTGCTACACACT 58.223 39.130 0.00 0.00 0.00 3.55
432 433 4.573201 TGAGTAAAACAACCTGCTACACAC 59.427 41.667 0.00 0.00 0.00 3.82
433 434 4.573201 GTGAGTAAAACAACCTGCTACACA 59.427 41.667 0.00 0.00 0.00 3.72
434 435 4.024302 GGTGAGTAAAACAACCTGCTACAC 60.024 45.833 0.00 0.00 0.00 2.90
435 436 4.131596 GGTGAGTAAAACAACCTGCTACA 58.868 43.478 0.00 0.00 0.00 2.74
436 437 4.386711 AGGTGAGTAAAACAACCTGCTAC 58.613 43.478 4.25 0.00 0.00 3.58
437 438 4.699925 AGGTGAGTAAAACAACCTGCTA 57.300 40.909 4.25 0.00 0.00 3.49
438 439 3.577805 AGGTGAGTAAAACAACCTGCT 57.422 42.857 4.25 0.00 0.00 4.24
439 440 5.959618 AATAGGTGAGTAAAACAACCTGC 57.040 39.130 12.29 0.00 0.00 4.85
440 441 6.640907 GCAAAATAGGTGAGTAAAACAACCTG 59.359 38.462 12.29 1.48 0.00 4.00
441 442 6.514376 CGCAAAATAGGTGAGTAAAACAACCT 60.514 38.462 8.81 8.81 0.00 3.50
442 443 5.627780 CGCAAAATAGGTGAGTAAAACAACC 59.372 40.000 0.00 0.00 0.00 3.77
443 444 6.203647 ACGCAAAATAGGTGAGTAAAACAAC 58.796 36.000 0.00 0.00 0.00 3.32
444 445 6.380095 ACGCAAAATAGGTGAGTAAAACAA 57.620 33.333 0.00 0.00 0.00 2.83
445 446 5.049267 GGACGCAAAATAGGTGAGTAAAACA 60.049 40.000 0.00 0.00 0.00 2.83
446 447 5.388111 GGACGCAAAATAGGTGAGTAAAAC 58.612 41.667 0.00 0.00 0.00 2.43
447 448 4.456566 GGGACGCAAAATAGGTGAGTAAAA 59.543 41.667 0.00 0.00 0.00 1.52
448 449 4.004982 GGGACGCAAAATAGGTGAGTAAA 58.995 43.478 0.00 0.00 0.00 2.01
449 450 3.262405 AGGGACGCAAAATAGGTGAGTAA 59.738 43.478 0.00 0.00 0.00 2.24
450 451 2.835764 AGGGACGCAAAATAGGTGAGTA 59.164 45.455 0.00 0.00 0.00 2.59
451 452 1.628846 AGGGACGCAAAATAGGTGAGT 59.371 47.619 0.00 0.00 0.00 3.41
452 453 2.403252 AGGGACGCAAAATAGGTGAG 57.597 50.000 0.00 0.00 0.00 3.51
453 454 3.985019 TTAGGGACGCAAAATAGGTGA 57.015 42.857 0.00 0.00 0.00 4.02
454 455 5.576447 AATTTAGGGACGCAAAATAGGTG 57.424 39.130 0.00 0.00 0.00 4.00
455 456 7.706100 TTAAATTTAGGGACGCAAAATAGGT 57.294 32.000 0.00 0.00 0.00 3.08
456 457 8.410141 TGATTAAATTTAGGGACGCAAAATAGG 58.590 33.333 0.00 0.00 0.00 2.57
457 458 9.796120 TTGATTAAATTTAGGGACGCAAAATAG 57.204 29.630 0.00 0.00 0.00 1.73
459 460 9.665719 AATTGATTAAATTTAGGGACGCAAAAT 57.334 25.926 0.00 0.00 34.72 1.82
460 461 9.495572 AAATTGATTAAATTTAGGGACGCAAAA 57.504 25.926 0.00 0.00 44.84 2.44
461 462 9.145865 GAAATTGATTAAATTTAGGGACGCAAA 57.854 29.630 0.00 0.00 46.29 3.68
462 463 7.762159 GGAAATTGATTAAATTTAGGGACGCAA 59.238 33.333 0.00 0.00 46.29 4.85
463 464 7.093727 TGGAAATTGATTAAATTTAGGGACGCA 60.094 33.333 0.00 0.00 46.29 5.24
464 465 7.262048 TGGAAATTGATTAAATTTAGGGACGC 58.738 34.615 0.00 0.00 46.29 5.19
465 466 7.435192 GCTGGAAATTGATTAAATTTAGGGACG 59.565 37.037 0.00 0.00 46.29 4.79
466 467 8.257306 TGCTGGAAATTGATTAAATTTAGGGAC 58.743 33.333 0.00 0.00 46.29 4.46
467 468 8.372877 TGCTGGAAATTGATTAAATTTAGGGA 57.627 30.769 0.00 0.00 46.29 4.20
468 469 9.447157 TTTGCTGGAAATTGATTAAATTTAGGG 57.553 29.630 0.00 0.00 46.29 3.53
484 485 9.347240 TGGAAATTGATTAAATTTTGCTGGAAA 57.653 25.926 0.00 0.00 46.29 3.13
485 486 8.915057 TGGAAATTGATTAAATTTTGCTGGAA 57.085 26.923 0.00 0.00 46.29 3.53
486 487 7.119553 GCTGGAAATTGATTAAATTTTGCTGGA 59.880 33.333 0.00 0.00 46.29 3.86
487 488 7.245604 GCTGGAAATTGATTAAATTTTGCTGG 58.754 34.615 0.00 0.00 46.29 4.85
488 489 6.957077 CGCTGGAAATTGATTAAATTTTGCTG 59.043 34.615 0.00 0.00 46.29 4.41
489 490 6.650390 ACGCTGGAAATTGATTAAATTTTGCT 59.350 30.769 0.00 0.00 46.29 3.91
490 491 6.737750 CACGCTGGAAATTGATTAAATTTTGC 59.262 34.615 0.00 0.00 46.29 3.68
491 492 7.795859 ACACGCTGGAAATTGATTAAATTTTG 58.204 30.769 0.00 0.00 46.29 2.44
492 493 7.961325 ACACGCTGGAAATTGATTAAATTTT 57.039 28.000 0.00 0.00 46.29 1.82
493 494 7.275560 GCTACACGCTGGAAATTGATTAAATTT 59.724 33.333 0.00 0.00 42.07 1.82
494 495 6.751888 GCTACACGCTGGAAATTGATTAAATT 59.248 34.615 0.00 0.00 36.43 1.82
495 496 6.127758 TGCTACACGCTGGAAATTGATTAAAT 60.128 34.615 0.00 0.00 40.11 1.40
496 497 5.182190 TGCTACACGCTGGAAATTGATTAAA 59.818 36.000 0.00 0.00 40.11 1.52
497 498 4.697828 TGCTACACGCTGGAAATTGATTAA 59.302 37.500 0.00 0.00 40.11 1.40
498 499 4.257731 TGCTACACGCTGGAAATTGATTA 58.742 39.130 0.00 0.00 40.11 1.75
499 500 3.081061 TGCTACACGCTGGAAATTGATT 58.919 40.909 0.00 0.00 40.11 2.57
500 501 2.710377 TGCTACACGCTGGAAATTGAT 58.290 42.857 0.00 0.00 40.11 2.57
501 502 2.177394 TGCTACACGCTGGAAATTGA 57.823 45.000 0.00 0.00 40.11 2.57
502 503 2.226437 ACTTGCTACACGCTGGAAATTG 59.774 45.455 0.00 0.00 40.11 2.32
503 504 2.504367 ACTTGCTACACGCTGGAAATT 58.496 42.857 0.00 0.00 40.11 1.82
504 505 2.185004 ACTTGCTACACGCTGGAAAT 57.815 45.000 0.00 0.00 40.11 2.17
505 506 1.601903 CAACTTGCTACACGCTGGAAA 59.398 47.619 0.00 0.00 40.11 3.13
506 507 1.225855 CAACTTGCTACACGCTGGAA 58.774 50.000 0.00 0.00 40.11 3.53
507 508 0.105964 ACAACTTGCTACACGCTGGA 59.894 50.000 0.00 0.00 40.11 3.86
508 509 0.512952 GACAACTTGCTACACGCTGG 59.487 55.000 0.00 0.00 40.11 4.85
509 510 1.502231 AGACAACTTGCTACACGCTG 58.498 50.000 0.00 0.00 40.11 5.18
510 511 2.296471 AGTAGACAACTTGCTACACGCT 59.704 45.455 17.96 0.00 39.48 5.07
511 512 2.662156 GAGTAGACAACTTGCTACACGC 59.338 50.000 17.96 8.90 39.07 5.34
512 513 3.669122 GTGAGTAGACAACTTGCTACACG 59.331 47.826 17.96 0.00 39.07 4.49
513 514 3.988517 GGTGAGTAGACAACTTGCTACAC 59.011 47.826 17.96 14.36 39.07 2.90
514 515 3.895656 AGGTGAGTAGACAACTTGCTACA 59.104 43.478 17.96 4.21 39.07 2.74
515 516 4.522722 AGGTGAGTAGACAACTTGCTAC 57.477 45.455 12.09 12.09 39.07 3.58
516 517 6.852420 AATAGGTGAGTAGACAACTTGCTA 57.148 37.500 0.00 0.00 39.07 3.49
517 518 5.746990 AATAGGTGAGTAGACAACTTGCT 57.253 39.130 0.00 0.00 39.07 3.91
518 519 6.603095 CAAAATAGGTGAGTAGACAACTTGC 58.397 40.000 0.00 0.00 39.07 4.01
519 520 6.603095 GCAAAATAGGTGAGTAGACAACTTG 58.397 40.000 0.00 0.00 39.07 3.16
520 521 5.408604 CGCAAAATAGGTGAGTAGACAACTT 59.591 40.000 0.00 0.00 39.07 2.66
521 522 4.929808 CGCAAAATAGGTGAGTAGACAACT 59.070 41.667 0.00 0.00 42.80 3.16
522 523 4.927425 TCGCAAAATAGGTGAGTAGACAAC 59.073 41.667 0.00 0.00 0.00 3.32
523 524 4.927425 GTCGCAAAATAGGTGAGTAGACAA 59.073 41.667 0.00 0.00 0.00 3.18
524 525 4.491676 GTCGCAAAATAGGTGAGTAGACA 58.508 43.478 0.00 0.00 0.00 3.41
525 526 3.864003 GGTCGCAAAATAGGTGAGTAGAC 59.136 47.826 0.00 0.00 0.00 2.59
526 527 3.512329 TGGTCGCAAAATAGGTGAGTAGA 59.488 43.478 0.00 0.00 0.00 2.59
527 528 3.857052 TGGTCGCAAAATAGGTGAGTAG 58.143 45.455 0.00 0.00 0.00 2.57
528 529 3.965379 TGGTCGCAAAATAGGTGAGTA 57.035 42.857 0.00 0.00 0.00 2.59
529 530 2.851263 TGGTCGCAAAATAGGTGAGT 57.149 45.000 0.00 0.00 0.00 3.41
530 531 6.377327 AAATATGGTCGCAAAATAGGTGAG 57.623 37.500 0.00 0.00 0.00 3.51
531 532 6.018588 CGTAAATATGGTCGCAAAATAGGTGA 60.019 38.462 0.00 0.00 0.00 4.02
532 533 6.018588 TCGTAAATATGGTCGCAAAATAGGTG 60.019 38.462 0.00 0.00 0.00 4.00
533 534 6.050432 TCGTAAATATGGTCGCAAAATAGGT 58.950 36.000 0.00 0.00 0.00 3.08
534 535 6.533819 TCGTAAATATGGTCGCAAAATAGG 57.466 37.500 0.00 0.00 0.00 2.57
535 536 7.792925 TCATCGTAAATATGGTCGCAAAATAG 58.207 34.615 0.00 0.00 0.00 1.73
536 537 7.716768 TCATCGTAAATATGGTCGCAAAATA 57.283 32.000 0.00 0.00 0.00 1.40
537 538 6.612247 TCATCGTAAATATGGTCGCAAAAT 57.388 33.333 0.00 0.00 0.00 1.82
538 539 6.612247 ATCATCGTAAATATGGTCGCAAAA 57.388 33.333 0.00 0.00 0.00 2.44
539 540 7.716768 TTATCATCGTAAATATGGTCGCAAA 57.283 32.000 0.00 0.00 0.00 3.68
540 541 7.716768 TTTATCATCGTAAATATGGTCGCAA 57.283 32.000 0.00 0.00 0.00 4.85
541 542 7.439955 AGTTTTATCATCGTAAATATGGTCGCA 59.560 33.333 0.00 0.00 0.00 5.10
542 543 7.793902 AGTTTTATCATCGTAAATATGGTCGC 58.206 34.615 0.00 0.00 0.00 5.19
543 544 9.580916 CAAGTTTTATCATCGTAAATATGGTCG 57.419 33.333 0.00 0.00 0.00 4.79
544 545 9.878599 CCAAGTTTTATCATCGTAAATATGGTC 57.121 33.333 0.00 0.00 0.00 4.02
545 546 9.621629 TCCAAGTTTTATCATCGTAAATATGGT 57.378 29.630 0.00 0.00 30.75 3.55
549 550 8.984764 CGGATCCAAGTTTTATCATCGTAAATA 58.015 33.333 13.41 0.00 0.00 1.40
550 551 7.713507 TCGGATCCAAGTTTTATCATCGTAAAT 59.286 33.333 13.41 0.00 0.00 1.40
551 552 7.042950 TCGGATCCAAGTTTTATCATCGTAAA 58.957 34.615 13.41 0.00 0.00 2.01
552 553 6.575267 TCGGATCCAAGTTTTATCATCGTAA 58.425 36.000 13.41 0.00 0.00 3.18
553 554 6.151663 TCGGATCCAAGTTTTATCATCGTA 57.848 37.500 13.41 0.00 0.00 3.43
554 555 5.018539 TCGGATCCAAGTTTTATCATCGT 57.981 39.130 13.41 0.00 0.00 3.73
555 556 4.084328 GCTCGGATCCAAGTTTTATCATCG 60.084 45.833 13.41 0.00 0.00 3.84
556 557 5.059833 AGCTCGGATCCAAGTTTTATCATC 58.940 41.667 13.41 0.00 0.00 2.92
557 558 5.041191 AGCTCGGATCCAAGTTTTATCAT 57.959 39.130 13.41 0.00 0.00 2.45
558 559 4.487714 AGCTCGGATCCAAGTTTTATCA 57.512 40.909 13.41 0.00 0.00 2.15
559 560 5.602628 AGTAGCTCGGATCCAAGTTTTATC 58.397 41.667 13.41 0.00 0.00 1.75
560 561 5.364157 AGAGTAGCTCGGATCCAAGTTTTAT 59.636 40.000 13.41 0.00 35.36 1.40
561 562 4.710375 AGAGTAGCTCGGATCCAAGTTTTA 59.290 41.667 13.41 0.00 35.36 1.52
562 563 3.515901 AGAGTAGCTCGGATCCAAGTTTT 59.484 43.478 13.41 0.00 35.36 2.43
563 564 3.100671 AGAGTAGCTCGGATCCAAGTTT 58.899 45.455 13.41 0.00 35.36 2.66
564 565 2.741145 AGAGTAGCTCGGATCCAAGTT 58.259 47.619 13.41 2.88 35.36 2.66
565 566 2.445682 AGAGTAGCTCGGATCCAAGT 57.554 50.000 13.41 0.00 35.36 3.16
566 567 5.461032 AATAAGAGTAGCTCGGATCCAAG 57.539 43.478 13.41 3.31 35.36 3.61
567 568 6.971726 TTAATAAGAGTAGCTCGGATCCAA 57.028 37.500 13.41 0.00 35.36 3.53
568 569 8.824756 ATATTAATAAGAGTAGCTCGGATCCA 57.175 34.615 13.41 0.00 35.36 3.41
569 570 8.904834 TGATATTAATAAGAGTAGCTCGGATCC 58.095 37.037 0.00 0.00 35.36 3.36
570 571 9.944663 CTGATATTAATAAGAGTAGCTCGGATC 57.055 37.037 0.00 0.00 35.36 3.36
571 572 9.688091 TCTGATATTAATAAGAGTAGCTCGGAT 57.312 33.333 0.00 0.00 35.36 4.18
572 573 9.516546 TTCTGATATTAATAAGAGTAGCTCGGA 57.483 33.333 0.00 0.00 35.36 4.55
591 592 9.451002 TCCCATAATGTAAAACGTTTTCTGATA 57.549 29.630 28.31 17.49 0.00 2.15
592 593 8.241367 GTCCCATAATGTAAAACGTTTTCTGAT 58.759 33.333 28.31 15.84 0.00 2.90
593 594 7.571613 CGTCCCATAATGTAAAACGTTTTCTGA 60.572 37.037 28.31 14.35 0.00 3.27
594 595 6.521821 CGTCCCATAATGTAAAACGTTTTCTG 59.478 38.462 28.31 16.09 0.00 3.02
595 596 6.348704 CCGTCCCATAATGTAAAACGTTTTCT 60.349 38.462 28.31 14.37 0.00 2.52
596 597 5.796437 CCGTCCCATAATGTAAAACGTTTTC 59.204 40.000 28.31 19.39 0.00 2.29
597 598 5.472820 TCCGTCCCATAATGTAAAACGTTTT 59.527 36.000 27.65 27.65 0.00 2.43
598 599 5.002516 TCCGTCCCATAATGTAAAACGTTT 58.997 37.500 7.96 7.96 0.00 3.60
599 600 4.577875 TCCGTCCCATAATGTAAAACGTT 58.422 39.130 0.00 0.00 0.00 3.99
600 601 4.186159 CTCCGTCCCATAATGTAAAACGT 58.814 43.478 0.00 0.00 0.00 3.99
601 602 3.558418 CCTCCGTCCCATAATGTAAAACG 59.442 47.826 0.00 0.00 0.00 3.60
602 603 3.881089 CCCTCCGTCCCATAATGTAAAAC 59.119 47.826 0.00 0.00 0.00 2.43
603 604 3.781407 TCCCTCCGTCCCATAATGTAAAA 59.219 43.478 0.00 0.00 0.00 1.52
604 605 3.386063 TCCCTCCGTCCCATAATGTAAA 58.614 45.455 0.00 0.00 0.00 2.01
605 606 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
606 607 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
607 608 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
608 609 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
609 610 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
610 611 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
611 612 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
612 613 0.338814 AAGTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
613 614 0.324091 GAAGTACTCCCTCCGTCCCA 60.324 60.000 0.00 0.00 0.00 4.37
614 615 0.324091 TGAAGTACTCCCTCCGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
624 625 9.255304 GAGAATGTGAAGGATAATGAAGTACTC 57.745 37.037 0.00 0.00 0.00 2.59
632 633 5.469421 GGCTCTGAGAATGTGAAGGATAATG 59.531 44.000 9.28 0.00 0.00 1.90
672 673 3.384146 ACCTCGTCTCTCTATGTCGTAGA 59.616 47.826 1.81 1.81 37.09 2.59
696 697 4.300803 ACAGATTTTACTCGTACGTGCAA 58.699 39.130 16.05 7.04 0.00 4.08
705 706 9.445786 TTTGCTTAGAAAAACAGATTTTACTCG 57.554 29.630 0.00 0.00 41.27 4.18
718 719 7.067116 CGAGAACACGTATTTGCTTAGAAAAA 58.933 34.615 0.00 0.00 0.00 1.94
734 735 2.582687 GTAGGAGTGAACGAGAACACG 58.417 52.381 0.00 0.00 41.22 4.49
743 744 1.516423 GAGGCCGGTAGGAGTGAAC 59.484 63.158 1.90 0.00 41.02 3.18
748 749 2.664835 ATCTGGGAGGCCGGTAGGAG 62.665 65.000 1.90 0.00 41.02 3.69
758 759 4.263506 ACCAAGTTTTCAGTATCTGGGAGG 60.264 45.833 0.00 0.00 31.51 4.30
760 761 4.349636 TGACCAAGTTTTCAGTATCTGGGA 59.650 41.667 0.00 0.00 31.51 4.37
761 762 4.651778 TGACCAAGTTTTCAGTATCTGGG 58.348 43.478 0.00 0.00 31.51 4.45
792 794 1.376037 GGAAGGCGGTTGAGGACAG 60.376 63.158 0.00 0.00 0.00 3.51
803 805 1.135689 GTGCTGTACAAATGGAAGGCG 60.136 52.381 0.00 0.00 0.00 5.52
805 807 1.818674 GGGTGCTGTACAAATGGAAGG 59.181 52.381 0.00 0.00 0.00 3.46
822 824 5.248020 TCATGCTAATTTGGATTGTTTGGGT 59.752 36.000 0.00 0.00 0.00 4.51
850 852 1.286257 GAAGGGAGGGCAGGAGAAATT 59.714 52.381 0.00 0.00 0.00 1.82
958 988 1.299976 GGTTCCTGGTTGCCGATCT 59.700 57.895 0.00 0.00 0.00 2.75
1498 1528 1.881973 AGTGGCACTTGCACTAATGTG 59.118 47.619 15.88 0.00 46.37 3.21
1499 1529 1.881973 CAGTGGCACTTGCACTAATGT 59.118 47.619 19.43 0.00 44.36 2.71
1500 1530 1.401931 GCAGTGGCACTTGCACTAATG 60.402 52.381 26.33 13.19 44.36 1.90
1551 1581 2.202756 GCGCCGTACTCCTCTTGG 60.203 66.667 0.00 0.00 0.00 3.61
1574 1604 0.040603 GAAGTCGTCGACGTGGAAGT 60.041 55.000 34.40 17.36 40.80 3.01
1649 1679 2.892640 CGTCTCGAGGGCAATGGA 59.107 61.111 13.56 0.00 0.00 3.41
1671 1701 2.768527 GGACACATCCTCTTCCTCATCA 59.231 50.000 0.00 0.00 42.45 3.07
1677 1707 0.461961 CCTCGGACACATCCTCTTCC 59.538 60.000 0.00 0.00 43.73 3.46
1713 1743 0.613260 CCATGAACCCGAAGTCCAGA 59.387 55.000 0.00 0.00 0.00 3.86
1714 1744 0.613260 TCCATGAACCCGAAGTCCAG 59.387 55.000 0.00 0.00 0.00 3.86
1780 1810 1.766143 GCCATCATCTCGAACGGTGC 61.766 60.000 0.00 0.00 0.00 5.01
2036 2069 0.603065 ATTTTGTTCCTGCCGCTTCC 59.397 50.000 0.00 0.00 0.00 3.46
2085 2118 2.665603 GAGCTTTCCTCGTGGCCT 59.334 61.111 3.32 0.00 0.00 5.19
2212 2245 1.339438 GCAGATGAGAGCCAGGTCAAA 60.339 52.381 0.00 0.00 0.00 2.69
2217 2250 0.540454 TGAAGCAGATGAGAGCCAGG 59.460 55.000 0.00 0.00 0.00 4.45
2225 2258 8.515695 AAGAAATTATGACATGAAGCAGATGA 57.484 30.769 0.00 0.00 0.00 2.92
2265 2298 2.938838 ACACAGGGGAATTTTTCACGA 58.061 42.857 0.00 0.00 32.51 4.35
2282 2315 3.610677 ACTGTGCAAACGCTTAAAAACAC 59.389 39.130 0.00 0.00 0.00 3.32
2325 3025 6.152154 CGGAGGGAGTAATTAACACCAAATTT 59.848 38.462 0.00 0.00 40.39 1.82
2330 3030 3.175594 ACGGAGGGAGTAATTAACACCA 58.824 45.455 0.00 0.00 40.39 4.17
2472 3173 8.550376 GGCGTTAACATTTCCGTAAATCTAATA 58.450 33.333 6.39 0.00 32.87 0.98
2505 3206 2.034879 CGAGATGCAAACGCCCACT 61.035 57.895 0.00 0.00 0.00 4.00
2598 3299 1.600636 CTGAACGCCCACACACCAT 60.601 57.895 0.00 0.00 0.00 3.55
2648 3349 3.957586 CCACACAGCAGCCCCTCA 61.958 66.667 0.00 0.00 0.00 3.86
2658 3359 2.591429 TGCTGAACGCCCACACAG 60.591 61.111 0.00 0.00 38.05 3.66
2696 3397 2.318519 TAGCCCTTGTGTGTGCGTGT 62.319 55.000 0.00 0.00 0.00 4.49
2740 3441 2.434428 GGAGAGGAGACAGACGTGTAA 58.566 52.381 0.00 0.00 36.88 2.41
2741 3442 1.339824 GGGAGAGGAGACAGACGTGTA 60.340 57.143 0.00 0.00 36.88 2.90
2932 3635 3.254411 TGCAAAAACATATGGCAACTCGA 59.746 39.130 7.80 0.00 37.61 4.04
3044 3747 2.440247 GGCATGCTAGGGCCGTTT 60.440 61.111 18.92 0.00 40.93 3.60
3061 3765 0.520404 GAGTTGCCATGTGCTCACAG 59.480 55.000 8.74 0.00 45.48 3.66
3165 3869 1.885887 GCCATGGTTGCTCAACTACAA 59.114 47.619 14.67 0.00 40.94 2.41
3168 3872 1.885887 GTTGCCATGGTTGCTCAACTA 59.114 47.619 19.25 6.96 40.94 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.