Multiple sequence alignment - TraesCS4A01G235800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G235800 chr4A 100.000 2385 0 0 1 2385 544379953 544382337 0.000000e+00 4405.0
1 TraesCS4A01G235800 chr4A 100.000 459 0 0 2799 3257 544382751 544383209 0.000000e+00 848.0
2 TraesCS4A01G235800 chr5D 92.237 876 53 3 1510 2385 442011534 442010674 0.000000e+00 1227.0
3 TraesCS4A01G235800 chr5D 81.839 870 85 42 531 1354 442012440 442011598 0.000000e+00 664.0
4 TraesCS4A01G235800 chr5D 82.237 456 42 17 2800 3250 442010657 442010236 1.110000e-94 357.0
5 TraesCS4A01G235800 chr3B 89.958 946 81 7 1445 2382 545668228 545669167 0.000000e+00 1208.0
6 TraesCS4A01G235800 chr3B 89.695 951 80 11 1445 2385 545433035 545433977 0.000000e+00 1197.0
7 TraesCS4A01G235800 chr3B 89.146 949 89 8 1445 2385 545562754 545563696 0.000000e+00 1170.0
8 TraesCS4A01G235800 chr3B 89.158 950 86 10 1445 2385 545494640 545495581 0.000000e+00 1168.0
9 TraesCS4A01G235800 chr3B 84.256 578 47 27 812 1363 545432477 545433036 1.040000e-144 523.0
10 TraesCS4A01G235800 chr3B 83.750 560 48 25 829 1363 545667688 545668229 1.050000e-134 490.0
11 TraesCS4A01G235800 chr3B 83.189 577 54 29 812 1363 545562197 545562755 3.780000e-134 488.0
12 TraesCS4A01G235800 chr3B 86.087 230 15 12 879 1102 545493523 545493741 7.030000e-57 231.0
13 TraesCS4A01G235800 chr3D 80.895 1654 201 69 777 2385 419515230 419516813 0.000000e+00 1197.0
14 TraesCS4A01G235800 chr3D 91.787 828 64 2 1511 2338 419387022 419387845 0.000000e+00 1149.0
15 TraesCS4A01G235800 chr3D 83.128 569 51 17 812 1353 419386417 419386967 8.180000e-131 477.0
16 TraesCS4A01G235800 chr3D 89.655 87 7 2 1361 1445 1016670 1016584 3.440000e-20 110.0
17 TraesCS4A01G235800 chr3D 81.356 118 9 7 2812 2921 418877088 418877200 2.080000e-12 84.2
18 TraesCS4A01G235800 chr3D 81.356 118 9 7 2812 2921 418892385 418892497 2.080000e-12 84.2
19 TraesCS4A01G235800 chr3D 88.679 53 5 1 1402 1454 579046643 579046694 2.710000e-06 63.9
20 TraesCS4A01G235800 chr5B 91.289 861 62 3 1510 2370 538038727 538037880 0.000000e+00 1162.0
21 TraesCS4A01G235800 chr5B 80.372 861 78 46 531 1349 538039605 538038794 1.310000e-158 569.0
22 TraesCS4A01G235800 chr5B 86.567 268 31 4 2984 3250 538034703 538034440 1.140000e-74 291.0
23 TraesCS4A01G235800 chr3A 88.523 941 88 14 1445 2372 531944485 531943552 0.000000e+00 1122.0
24 TraesCS4A01G235800 chr3A 87.913 877 94 5 1512 2385 531702185 531701318 0.000000e+00 1022.0
25 TraesCS4A01G235800 chr3A 83.069 567 54 20 812 1355 531945036 531944489 8.180000e-131 477.0
26 TraesCS4A01G235800 chr3A 76.754 684 85 37 724 1363 531897717 531897064 6.780000e-82 315.0
27 TraesCS4A01G235800 chr3A 77.954 567 66 34 828 1363 531702769 531702231 1.900000e-77 300.0
28 TraesCS4A01G235800 chr3A 93.878 49 3 0 1402 1450 105945834 105945786 1.250000e-09 75.0
29 TraesCS4A01G235800 chr7B 81.641 1389 160 46 981 2313 641141349 641142698 0.000000e+00 1064.0
30 TraesCS4A01G235800 chr7B 88.372 86 9 1 1362 1446 719495211 719495126 5.750000e-18 102.0
31 TraesCS4A01G235800 chr7B 96.875 32 1 0 1423 1454 736603999 736603968 2.000000e-03 54.7
32 TraesCS4A01G235800 chr7A 78.597 556 60 34 884 1396 669771389 669771928 2.440000e-81 313.0
33 TraesCS4A01G235800 chr7D 80.685 409 39 18 995 1371 577703487 577703887 6.880000e-72 281.0
34 TraesCS4A01G235800 chr5A 89.011 91 9 1 1362 1451 312755007 312755097 9.550000e-21 111.0
35 TraesCS4A01G235800 chr2A 89.796 49 5 0 1398 1446 54604340 54604388 2.710000e-06 63.9
36 TraesCS4A01G235800 chr2B 100.000 30 0 0 1421 1450 760140374 760140345 4.540000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G235800 chr4A 544379953 544383209 3256 False 2626.500000 4405 100.000000 1 3257 2 chr4A.!!$F1 3256
1 TraesCS4A01G235800 chr5D 442010236 442012440 2204 True 749.333333 1227 85.437667 531 3250 3 chr5D.!!$R1 2719
2 TraesCS4A01G235800 chr3B 545432477 545433977 1500 False 860.000000 1197 86.975500 812 2385 2 chr3B.!!$F1 1573
3 TraesCS4A01G235800 chr3B 545667688 545669167 1479 False 849.000000 1208 86.854000 829 2382 2 chr3B.!!$F4 1553
4 TraesCS4A01G235800 chr3B 545562197 545563696 1499 False 829.000000 1170 86.167500 812 2385 2 chr3B.!!$F3 1573
5 TraesCS4A01G235800 chr3B 545493523 545495581 2058 False 699.500000 1168 87.622500 879 2385 2 chr3B.!!$F2 1506
6 TraesCS4A01G235800 chr3D 419515230 419516813 1583 False 1197.000000 1197 80.895000 777 2385 1 chr3D.!!$F3 1608
7 TraesCS4A01G235800 chr3D 419386417 419387845 1428 False 813.000000 1149 87.457500 812 2338 2 chr3D.!!$F5 1526
8 TraesCS4A01G235800 chr5B 538034440 538039605 5165 True 674.000000 1162 86.076000 531 3250 3 chr5B.!!$R1 2719
9 TraesCS4A01G235800 chr3A 531943552 531945036 1484 True 799.500000 1122 85.796000 812 2372 2 chr3A.!!$R4 1560
10 TraesCS4A01G235800 chr3A 531701318 531702769 1451 True 661.000000 1022 82.933500 828 2385 2 chr3A.!!$R3 1557
11 TraesCS4A01G235800 chr3A 531897064 531897717 653 True 315.000000 315 76.754000 724 1363 1 chr3A.!!$R2 639
12 TraesCS4A01G235800 chr7B 641141349 641142698 1349 False 1064.000000 1064 81.641000 981 2313 1 chr7B.!!$F1 1332
13 TraesCS4A01G235800 chr7A 669771389 669771928 539 False 313.000000 313 78.597000 884 1396 1 chr7A.!!$F1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 312 0.031585 GCCGGAAAGGTTTTGTCCAC 59.968 55.0 5.05 0.0 43.70 4.02 F
823 865 0.036388 TGAGCTGTCCGGTGGAAATC 60.036 55.0 0.00 0.0 31.38 2.17 F
1333 2132 0.038526 CTGCTTCGTTCGGGTACACT 60.039 55.0 0.00 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1499 2350 0.035152 GCACCCCTGACATCACATGA 60.035 55.0 0.00 0.0 0.00 3.07 R
1994 2845 0.163788 CACATCGTCTTGGTTCACGC 59.836 55.0 0.00 0.0 35.93 5.34 R
3195 7047 0.036765 ACAATCCACGCGGCTTTCTA 60.037 50.0 12.47 0.0 0.00 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.385358 AAACAACAAACTGTCCATGACC 57.615 40.909 0.00 0.00 0.00 4.02
22 23 2.306847 ACAACAAACTGTCCATGACCC 58.693 47.619 0.00 0.00 0.00 4.46
23 24 2.305928 CAACAAACTGTCCATGACCCA 58.694 47.619 0.00 0.00 0.00 4.51
24 25 2.276732 ACAAACTGTCCATGACCCAG 57.723 50.000 0.00 0.00 0.00 4.45
25 26 1.774254 ACAAACTGTCCATGACCCAGA 59.226 47.619 11.59 0.00 0.00 3.86
26 27 2.376518 ACAAACTGTCCATGACCCAGAT 59.623 45.455 11.59 0.00 0.00 2.90
27 28 3.181429 ACAAACTGTCCATGACCCAGATT 60.181 43.478 11.59 5.10 0.00 2.40
28 29 2.795231 ACTGTCCATGACCCAGATTG 57.205 50.000 11.59 0.00 0.00 2.67
29 30 2.269023 ACTGTCCATGACCCAGATTGA 58.731 47.619 11.59 0.00 0.00 2.57
30 31 2.644299 ACTGTCCATGACCCAGATTGAA 59.356 45.455 11.59 0.00 0.00 2.69
31 32 3.276857 CTGTCCATGACCCAGATTGAAG 58.723 50.000 0.00 0.00 0.00 3.02
32 33 2.644299 TGTCCATGACCCAGATTGAAGT 59.356 45.455 0.00 0.00 0.00 3.01
33 34 3.274288 GTCCATGACCCAGATTGAAGTC 58.726 50.000 0.00 0.00 0.00 3.01
34 35 2.239654 TCCATGACCCAGATTGAAGTCC 59.760 50.000 0.00 0.00 0.00 3.85
35 36 2.240667 CCATGACCCAGATTGAAGTCCT 59.759 50.000 0.00 0.00 0.00 3.85
36 37 3.308688 CCATGACCCAGATTGAAGTCCTT 60.309 47.826 0.00 0.00 0.00 3.36
37 38 3.703001 TGACCCAGATTGAAGTCCTTC 57.297 47.619 0.00 0.00 39.91 3.46
38 39 2.978978 TGACCCAGATTGAAGTCCTTCA 59.021 45.455 5.64 5.64 46.72 3.02
48 49 4.982241 TGAAGTCCTTCATGAACTTCCT 57.018 40.909 25.43 10.02 45.28 3.36
49 50 4.899502 TGAAGTCCTTCATGAACTTCCTC 58.100 43.478 25.43 12.86 45.28 3.71
50 51 4.347876 TGAAGTCCTTCATGAACTTCCTCA 59.652 41.667 25.43 14.70 45.28 3.86
51 52 4.982241 AGTCCTTCATGAACTTCCTCAA 57.018 40.909 3.38 0.00 0.00 3.02
52 53 4.904241 AGTCCTTCATGAACTTCCTCAAG 58.096 43.478 3.38 0.00 35.50 3.02
53 54 4.349342 AGTCCTTCATGAACTTCCTCAAGT 59.651 41.667 3.38 0.00 45.43 3.16
54 55 4.693095 GTCCTTCATGAACTTCCTCAAGTC 59.307 45.833 3.38 0.00 42.45 3.01
55 56 4.347876 TCCTTCATGAACTTCCTCAAGTCA 59.652 41.667 3.38 0.00 42.45 3.41
56 57 5.013495 TCCTTCATGAACTTCCTCAAGTCAT 59.987 40.000 3.38 0.00 42.45 3.06
57 58 5.709164 CCTTCATGAACTTCCTCAAGTCATT 59.291 40.000 3.38 0.00 42.45 2.57
58 59 6.349115 CCTTCATGAACTTCCTCAAGTCATTG 60.349 42.308 3.38 0.00 42.45 2.82
59 60 4.456911 TCATGAACTTCCTCAAGTCATTGC 59.543 41.667 0.00 0.00 42.45 3.56
60 61 3.149196 TGAACTTCCTCAAGTCATTGCC 58.851 45.455 0.00 0.00 42.45 4.52
61 62 1.813513 ACTTCCTCAAGTCATTGCCG 58.186 50.000 0.00 0.00 38.62 5.69
62 63 0.449388 CTTCCTCAAGTCATTGCCGC 59.551 55.000 0.00 0.00 36.30 6.53
63 64 0.960364 TTCCTCAAGTCATTGCCGCC 60.960 55.000 0.00 0.00 36.30 6.13
64 65 2.753966 CCTCAAGTCATTGCCGCCG 61.754 63.158 0.00 0.00 36.30 6.46
65 66 1.741401 CTCAAGTCATTGCCGCCGA 60.741 57.895 0.00 0.00 36.30 5.54
66 67 1.078497 TCAAGTCATTGCCGCCGAT 60.078 52.632 0.00 0.00 36.30 4.18
67 68 0.176910 TCAAGTCATTGCCGCCGATA 59.823 50.000 0.00 0.00 36.30 2.92
68 69 0.304705 CAAGTCATTGCCGCCGATAC 59.695 55.000 0.00 0.00 0.00 2.24
69 70 0.107897 AAGTCATTGCCGCCGATACA 60.108 50.000 0.00 0.00 0.00 2.29
70 71 0.106708 AGTCATTGCCGCCGATACAT 59.893 50.000 0.00 0.00 0.00 2.29
71 72 0.235665 GTCATTGCCGCCGATACATG 59.764 55.000 0.00 0.00 0.00 3.21
72 73 0.179059 TCATTGCCGCCGATACATGT 60.179 50.000 2.69 2.69 0.00 3.21
73 74 0.041047 CATTGCCGCCGATACATGTG 60.041 55.000 9.11 0.00 0.00 3.21
74 75 1.165907 ATTGCCGCCGATACATGTGG 61.166 55.000 9.11 1.98 35.21 4.17
75 76 2.203015 GCCGCCGATACATGTGGT 60.203 61.111 9.11 0.00 34.57 4.16
76 77 2.534019 GCCGCCGATACATGTGGTG 61.534 63.158 9.11 7.95 34.57 4.17
77 78 1.153449 CCGCCGATACATGTGGTGT 60.153 57.895 9.11 0.00 44.95 4.16
78 79 1.151777 CCGCCGATACATGTGGTGTC 61.152 60.000 9.11 0.64 42.29 3.67
92 93 1.538047 GGTGTCGTACCCACTGTAGA 58.462 55.000 9.46 0.00 44.15 2.59
93 94 1.200948 GGTGTCGTACCCACTGTAGAC 59.799 57.143 9.46 0.00 44.15 2.59
94 95 1.881973 GTGTCGTACCCACTGTAGACA 59.118 52.381 3.66 0.00 36.31 3.41
95 96 2.490903 GTGTCGTACCCACTGTAGACAT 59.509 50.000 0.00 0.00 38.57 3.06
96 97 2.751259 TGTCGTACCCACTGTAGACATC 59.249 50.000 0.00 0.00 35.02 3.06
97 98 2.098770 GTCGTACCCACTGTAGACATCC 59.901 54.545 0.00 0.00 32.47 3.51
98 99 2.097036 CGTACCCACTGTAGACATCCA 58.903 52.381 0.00 0.00 0.00 3.41
99 100 2.159282 CGTACCCACTGTAGACATCCAC 60.159 54.545 0.00 0.00 0.00 4.02
100 101 2.024176 ACCCACTGTAGACATCCACA 57.976 50.000 0.00 0.00 0.00 4.17
101 102 2.334977 ACCCACTGTAGACATCCACAA 58.665 47.619 0.00 0.00 0.00 3.33
102 103 2.038557 ACCCACTGTAGACATCCACAAC 59.961 50.000 0.00 0.00 0.00 3.32
103 104 2.038426 CCCACTGTAGACATCCACAACA 59.962 50.000 0.00 0.00 0.00 3.33
104 105 3.307691 CCCACTGTAGACATCCACAACAT 60.308 47.826 0.00 0.00 0.00 2.71
105 106 4.081142 CCCACTGTAGACATCCACAACATA 60.081 45.833 0.00 0.00 0.00 2.29
106 107 5.396772 CCCACTGTAGACATCCACAACATAT 60.397 44.000 0.00 0.00 0.00 1.78
107 108 5.755375 CCACTGTAGACATCCACAACATATC 59.245 44.000 0.00 0.00 0.00 1.63
108 109 5.460091 CACTGTAGACATCCACAACATATCG 59.540 44.000 0.00 0.00 0.00 2.92
109 110 4.944048 TGTAGACATCCACAACATATCGG 58.056 43.478 0.00 0.00 0.00 4.18
110 111 2.838736 AGACATCCACAACATATCGGC 58.161 47.619 0.00 0.00 0.00 5.54
111 112 1.526887 GACATCCACAACATATCGGCG 59.473 52.381 0.00 0.00 0.00 6.46
112 113 1.138069 ACATCCACAACATATCGGCGA 59.862 47.619 13.87 13.87 0.00 5.54
113 114 1.526887 CATCCACAACATATCGGCGAC 59.473 52.381 13.76 0.00 0.00 5.19
114 115 0.179094 TCCACAACATATCGGCGACC 60.179 55.000 13.76 0.00 0.00 4.79
127 128 3.470567 CGACCGTGCGCTCTGAAC 61.471 66.667 9.73 0.00 0.00 3.18
128 129 3.112709 GACCGTGCGCTCTGAACC 61.113 66.667 9.73 0.00 0.00 3.62
129 130 3.575351 GACCGTGCGCTCTGAACCT 62.575 63.158 9.73 0.00 0.00 3.50
130 131 2.811317 CCGTGCGCTCTGAACCTC 60.811 66.667 9.73 0.00 0.00 3.85
131 132 2.049156 CGTGCGCTCTGAACCTCA 60.049 61.111 9.73 0.00 0.00 3.86
132 133 2.091112 CGTGCGCTCTGAACCTCAG 61.091 63.158 9.73 0.00 45.59 3.35
133 134 1.739562 GTGCGCTCTGAACCTCAGG 60.740 63.158 9.73 0.00 44.39 3.86
134 135 2.817396 GCGCTCTGAACCTCAGGC 60.817 66.667 0.00 5.67 44.39 4.85
136 137 2.973899 GCTCTGAACCTCAGGCGA 59.026 61.111 3.92 0.00 44.39 5.54
137 138 1.446966 GCTCTGAACCTCAGGCGAC 60.447 63.158 3.92 0.00 44.39 5.19
138 139 1.216710 CTCTGAACCTCAGGCGACC 59.783 63.158 3.92 0.00 44.39 4.79
139 140 1.533033 TCTGAACCTCAGGCGACCA 60.533 57.895 3.92 0.00 44.39 4.02
140 141 1.374758 CTGAACCTCAGGCGACCAC 60.375 63.158 0.00 0.00 40.71 4.16
141 142 2.047179 GAACCTCAGGCGACCACC 60.047 66.667 0.00 0.00 0.00 4.61
142 143 3.934391 GAACCTCAGGCGACCACCG 62.934 68.421 0.00 0.00 42.21 4.94
150 151 4.160635 GCGACCACCGGCGAAATG 62.161 66.667 9.30 3.32 39.04 2.32
151 152 4.160635 CGACCACCGGCGAAATGC 62.161 66.667 9.30 0.00 45.38 3.56
152 153 2.746277 GACCACCGGCGAAATGCT 60.746 61.111 9.30 0.00 45.43 3.79
158 159 3.798650 CGGCGAAATGCTGCGGAA 61.799 61.111 0.00 0.00 44.47 4.30
159 160 2.566010 GGCGAAATGCTGCGGAAA 59.434 55.556 0.00 0.00 45.43 3.13
160 161 1.801512 GGCGAAATGCTGCGGAAAC 60.802 57.895 0.00 0.00 45.43 2.78
161 162 1.210155 GCGAAATGCTGCGGAAACT 59.790 52.632 0.00 0.00 41.73 2.66
162 163 0.387239 GCGAAATGCTGCGGAAACTT 60.387 50.000 0.00 0.00 41.73 2.66
163 164 1.330306 CGAAATGCTGCGGAAACTTG 58.670 50.000 0.00 0.00 0.00 3.16
164 165 1.701704 GAAATGCTGCGGAAACTTGG 58.298 50.000 0.00 0.00 0.00 3.61
165 166 1.000274 GAAATGCTGCGGAAACTTGGT 60.000 47.619 0.00 0.00 0.00 3.67
166 167 1.904287 AATGCTGCGGAAACTTGGTA 58.096 45.000 0.00 0.00 0.00 3.25
167 168 1.904287 ATGCTGCGGAAACTTGGTAA 58.096 45.000 0.00 0.00 0.00 2.85
168 169 0.948678 TGCTGCGGAAACTTGGTAAC 59.051 50.000 0.00 0.00 0.00 2.50
181 182 2.477880 GGTAACAACGGAGCATGGG 58.522 57.895 0.00 0.00 0.00 4.00
182 183 0.035820 GGTAACAACGGAGCATGGGA 60.036 55.000 0.00 0.00 0.00 4.37
183 184 1.369625 GTAACAACGGAGCATGGGAG 58.630 55.000 0.00 0.00 0.00 4.30
184 185 0.981183 TAACAACGGAGCATGGGAGT 59.019 50.000 0.00 0.00 0.00 3.85
185 186 0.981183 AACAACGGAGCATGGGAGTA 59.019 50.000 0.00 0.00 0.00 2.59
186 187 1.204146 ACAACGGAGCATGGGAGTAT 58.796 50.000 0.00 0.00 0.00 2.12
187 188 1.139058 ACAACGGAGCATGGGAGTATC 59.861 52.381 0.00 0.00 0.00 2.24
188 189 0.389391 AACGGAGCATGGGAGTATCG 59.611 55.000 0.00 0.00 34.37 2.92
189 190 1.290324 CGGAGCATGGGAGTATCGG 59.710 63.158 0.00 0.00 34.37 4.18
190 191 1.179174 CGGAGCATGGGAGTATCGGA 61.179 60.000 0.00 0.00 34.37 4.55
191 192 1.048601 GGAGCATGGGAGTATCGGAA 58.951 55.000 0.00 0.00 34.37 4.30
192 193 1.416401 GGAGCATGGGAGTATCGGAAA 59.584 52.381 0.00 0.00 34.37 3.13
193 194 2.158813 GGAGCATGGGAGTATCGGAAAA 60.159 50.000 0.00 0.00 34.37 2.29
194 195 3.541632 GAGCATGGGAGTATCGGAAAAA 58.458 45.455 0.00 0.00 34.37 1.94
231 232 9.903682 AAGATATGAACTTGTCAAAGAATGTTG 57.096 29.630 0.00 0.00 40.50 3.33
232 233 9.288576 AGATATGAACTTGTCAAAGAATGTTGA 57.711 29.630 0.00 0.00 40.50 3.18
233 234 9.897744 GATATGAACTTGTCAAAGAATGTTGAA 57.102 29.630 0.00 0.00 40.50 2.69
234 235 7.992180 ATGAACTTGTCAAAGAATGTTGAAC 57.008 32.000 0.00 0.00 40.50 3.18
235 236 6.918626 TGAACTTGTCAAAGAATGTTGAACA 58.081 32.000 0.00 0.00 39.18 3.18
236 237 7.028962 TGAACTTGTCAAAGAATGTTGAACAG 58.971 34.615 3.74 0.00 39.18 3.16
237 238 5.343249 ACTTGTCAAAGAATGTTGAACAGC 58.657 37.500 3.74 0.00 39.18 4.40
238 239 4.979943 TGTCAAAGAATGTTGAACAGCA 57.020 36.364 3.74 0.00 39.18 4.41
239 240 4.671377 TGTCAAAGAATGTTGAACAGCAC 58.329 39.130 3.74 0.00 39.18 4.40
240 241 4.157472 TGTCAAAGAATGTTGAACAGCACA 59.843 37.500 3.74 0.00 39.18 4.57
241 242 5.101628 GTCAAAGAATGTTGAACAGCACAA 58.898 37.500 3.74 0.00 39.18 3.33
242 243 5.576384 GTCAAAGAATGTTGAACAGCACAAA 59.424 36.000 3.74 0.00 39.18 2.83
243 244 6.090628 GTCAAAGAATGTTGAACAGCACAAAA 59.909 34.615 3.74 0.00 39.18 2.44
244 245 6.648310 TCAAAGAATGTTGAACAGCACAAAAA 59.352 30.769 3.74 0.00 34.59 1.94
293 294 6.927933 ATAAATGTGCGAGTAAAACTTTGC 57.072 33.333 0.00 0.00 32.64 3.68
294 295 2.766970 TGTGCGAGTAAAACTTTGCC 57.233 45.000 0.00 0.00 31.49 4.52
295 296 1.003331 TGTGCGAGTAAAACTTTGCCG 60.003 47.619 0.00 0.00 31.49 5.69
296 297 0.589223 TGCGAGTAAAACTTTGCCGG 59.411 50.000 0.00 0.00 31.49 6.13
297 298 0.869730 GCGAGTAAAACTTTGCCGGA 59.130 50.000 5.05 0.00 0.00 5.14
298 299 1.264826 GCGAGTAAAACTTTGCCGGAA 59.735 47.619 5.05 0.00 0.00 4.30
299 300 2.287129 GCGAGTAAAACTTTGCCGGAAA 60.287 45.455 5.05 0.00 0.00 3.13
300 301 3.551551 CGAGTAAAACTTTGCCGGAAAG 58.448 45.455 5.05 14.79 45.87 2.62
301 302 3.608474 CGAGTAAAACTTTGCCGGAAAGG 60.608 47.826 22.22 15.27 44.85 3.11
302 303 3.293337 AGTAAAACTTTGCCGGAAAGGT 58.707 40.909 22.22 15.87 43.96 3.50
306 307 2.595124 ACTTTGCCGGAAAGGTTTTG 57.405 45.000 22.22 4.39 44.85 2.44
307 308 1.828595 ACTTTGCCGGAAAGGTTTTGT 59.171 42.857 22.22 4.89 44.85 2.83
308 309 2.159156 ACTTTGCCGGAAAGGTTTTGTC 60.159 45.455 22.22 0.00 44.85 3.18
309 310 0.747852 TTGCCGGAAAGGTTTTGTCC 59.252 50.000 5.05 0.00 43.70 4.02
310 311 0.395862 TGCCGGAAAGGTTTTGTCCA 60.396 50.000 5.05 0.00 43.70 4.02
311 312 0.031585 GCCGGAAAGGTTTTGTCCAC 59.968 55.000 5.05 0.00 43.70 4.02
312 313 0.309612 CCGGAAAGGTTTTGTCCACG 59.690 55.000 0.00 0.00 34.51 4.94
313 314 1.018910 CGGAAAGGTTTTGTCCACGT 58.981 50.000 0.00 0.00 0.00 4.49
314 315 1.003223 CGGAAAGGTTTTGTCCACGTC 60.003 52.381 0.00 0.00 0.00 4.34
315 316 1.335810 GGAAAGGTTTTGTCCACGTCC 59.664 52.381 0.00 0.00 0.00 4.79
316 317 1.335810 GAAAGGTTTTGTCCACGTCCC 59.664 52.381 0.00 0.00 0.00 4.46
317 318 0.549469 AAGGTTTTGTCCACGTCCCT 59.451 50.000 0.00 0.00 0.00 4.20
318 319 0.179029 AGGTTTTGTCCACGTCCCTG 60.179 55.000 0.00 0.00 0.00 4.45
319 320 0.179040 GGTTTTGTCCACGTCCCTGA 60.179 55.000 0.00 0.00 0.00 3.86
320 321 1.670791 GTTTTGTCCACGTCCCTGAA 58.329 50.000 0.00 0.00 0.00 3.02
321 322 2.018515 GTTTTGTCCACGTCCCTGAAA 58.981 47.619 0.00 0.00 0.00 2.69
322 323 2.621526 GTTTTGTCCACGTCCCTGAAAT 59.378 45.455 0.00 0.00 0.00 2.17
323 324 3.773418 TTTGTCCACGTCCCTGAAATA 57.227 42.857 0.00 0.00 0.00 1.40
324 325 2.754946 TGTCCACGTCCCTGAAATAC 57.245 50.000 0.00 0.00 0.00 1.89
325 326 1.972075 TGTCCACGTCCCTGAAATACA 59.028 47.619 0.00 0.00 0.00 2.29
326 327 2.569853 TGTCCACGTCCCTGAAATACAT 59.430 45.455 0.00 0.00 0.00 2.29
327 328 2.936498 GTCCACGTCCCTGAAATACATG 59.064 50.000 0.00 0.00 0.00 3.21
328 329 1.670811 CCACGTCCCTGAAATACATGC 59.329 52.381 0.00 0.00 0.00 4.06
329 330 1.670811 CACGTCCCTGAAATACATGCC 59.329 52.381 0.00 0.00 0.00 4.40
330 331 1.280710 ACGTCCCTGAAATACATGCCA 59.719 47.619 0.00 0.00 0.00 4.92
331 332 2.290641 ACGTCCCTGAAATACATGCCAA 60.291 45.455 0.00 0.00 0.00 4.52
332 333 2.752354 CGTCCCTGAAATACATGCCAAA 59.248 45.455 0.00 0.00 0.00 3.28
333 334 3.181497 CGTCCCTGAAATACATGCCAAAG 60.181 47.826 0.00 0.00 0.00 2.77
334 335 2.760092 TCCCTGAAATACATGCCAAAGC 59.240 45.455 0.00 0.00 40.48 3.51
335 336 2.762327 CCCTGAAATACATGCCAAAGCT 59.238 45.455 0.00 0.00 40.80 3.74
336 337 3.196254 CCCTGAAATACATGCCAAAGCTT 59.804 43.478 0.00 0.00 40.80 3.74
337 338 4.178540 CCTGAAATACATGCCAAAGCTTG 58.821 43.478 0.00 0.00 46.74 4.01
350 351 4.208632 GCTTGTGCTACTCGGCAT 57.791 55.556 0.00 0.00 44.34 4.40
351 352 2.009888 GCTTGTGCTACTCGGCATC 58.990 57.895 0.00 0.00 44.34 3.91
352 353 0.460987 GCTTGTGCTACTCGGCATCT 60.461 55.000 0.00 0.00 44.34 2.90
353 354 1.565305 CTTGTGCTACTCGGCATCTC 58.435 55.000 0.00 0.00 44.34 2.75
354 355 0.894835 TTGTGCTACTCGGCATCTCA 59.105 50.000 0.00 0.00 44.34 3.27
355 356 0.173481 TGTGCTACTCGGCATCTCAC 59.827 55.000 0.00 0.00 44.34 3.51
356 357 0.173481 GTGCTACTCGGCATCTCACA 59.827 55.000 0.00 0.00 44.34 3.58
357 358 0.894835 TGCTACTCGGCATCTCACAA 59.105 50.000 0.00 0.00 37.29 3.33
358 359 1.482182 TGCTACTCGGCATCTCACAAT 59.518 47.619 0.00 0.00 37.29 2.71
359 360 1.863454 GCTACTCGGCATCTCACAATG 59.137 52.381 0.00 0.00 0.00 2.82
360 361 2.739932 GCTACTCGGCATCTCACAATGT 60.740 50.000 0.00 0.00 0.00 2.71
361 362 1.730501 ACTCGGCATCTCACAATGTG 58.269 50.000 7.12 7.12 34.45 3.21
362 363 0.376152 CTCGGCATCTCACAATGTGC 59.624 55.000 8.78 0.00 36.88 4.57
363 364 0.321475 TCGGCATCTCACAATGTGCA 60.321 50.000 8.78 0.00 39.27 4.57
364 365 0.522626 CGGCATCTCACAATGTGCAA 59.477 50.000 8.78 0.00 39.27 4.08
365 366 1.068402 CGGCATCTCACAATGTGCAAA 60.068 47.619 8.78 0.00 39.27 3.68
366 367 2.602878 GGCATCTCACAATGTGCAAAG 58.397 47.619 8.78 1.20 39.27 2.77
367 368 1.990563 GCATCTCACAATGTGCAAAGC 59.009 47.619 8.78 6.72 37.52 3.51
368 369 2.608506 GCATCTCACAATGTGCAAAGCA 60.609 45.455 8.78 0.00 37.52 3.91
369 370 3.644823 CATCTCACAATGTGCAAAGCAA 58.355 40.909 8.78 0.00 41.47 3.91
370 371 3.797451 TCTCACAATGTGCAAAGCAAA 57.203 38.095 8.78 0.00 41.47 3.68
371 372 3.446799 TCTCACAATGTGCAAAGCAAAC 58.553 40.909 8.78 0.00 41.47 2.93
372 373 3.130869 TCTCACAATGTGCAAAGCAAACT 59.869 39.130 8.78 0.00 41.47 2.66
373 374 3.859443 TCACAATGTGCAAAGCAAACTT 58.141 36.364 8.78 0.00 41.47 2.66
374 375 4.252073 TCACAATGTGCAAAGCAAACTTT 58.748 34.783 8.78 0.00 41.47 2.66
388 389 4.164822 CAAACTTTGCACACCATCCTAG 57.835 45.455 0.00 0.00 0.00 3.02
389 390 3.788227 AACTTTGCACACCATCCTAGA 57.212 42.857 0.00 0.00 0.00 2.43
390 391 4.307032 AACTTTGCACACCATCCTAGAT 57.693 40.909 0.00 0.00 0.00 1.98
391 392 3.878778 ACTTTGCACACCATCCTAGATC 58.121 45.455 0.00 0.00 0.00 2.75
392 393 2.602257 TTGCACACCATCCTAGATCG 57.398 50.000 0.00 0.00 0.00 3.69
393 394 1.775385 TGCACACCATCCTAGATCGA 58.225 50.000 0.00 0.00 0.00 3.59
394 395 1.683385 TGCACACCATCCTAGATCGAG 59.317 52.381 0.00 0.00 0.00 4.04
395 396 1.000283 GCACACCATCCTAGATCGAGG 60.000 57.143 15.34 15.34 38.03 4.63
396 397 1.615883 CACACCATCCTAGATCGAGGG 59.384 57.143 20.42 9.78 37.20 4.30
397 398 1.261480 CACCATCCTAGATCGAGGGG 58.739 60.000 20.42 16.58 35.47 4.79
398 399 0.115349 ACCATCCTAGATCGAGGGGG 59.885 60.000 20.42 21.80 35.47 5.40
419 420 7.867305 GGGGGAAAAGACAAAACAAAAATAA 57.133 32.000 0.00 0.00 0.00 1.40
420 421 8.282455 GGGGGAAAAGACAAAACAAAAATAAA 57.718 30.769 0.00 0.00 0.00 1.40
421 422 8.908903 GGGGGAAAAGACAAAACAAAAATAAAT 58.091 29.630 0.00 0.00 0.00 1.40
479 480 7.986085 ATAAGTGAAACATGCTAACTCAAGT 57.014 32.000 0.00 0.00 41.43 3.16
480 481 6.699575 AAGTGAAACATGCTAACTCAAGTT 57.300 33.333 0.46 0.46 41.43 2.66
481 482 6.064846 AGTGAAACATGCTAACTCAAGTTG 57.935 37.500 5.66 0.00 41.43 3.16
482 483 5.009010 AGTGAAACATGCTAACTCAAGTTGG 59.991 40.000 2.34 3.87 41.43 3.77
483 484 5.008613 GTGAAACATGCTAACTCAAGTTGGA 59.991 40.000 10.09 0.83 36.26 3.53
484 485 5.592282 TGAAACATGCTAACTCAAGTTGGAA 59.408 36.000 10.09 0.00 38.58 3.53
485 486 5.695851 AACATGCTAACTCAAGTTGGAAG 57.304 39.130 10.09 0.00 38.58 3.46
486 487 4.074970 ACATGCTAACTCAAGTTGGAAGG 58.925 43.478 10.09 4.13 38.58 3.46
487 488 4.202461 ACATGCTAACTCAAGTTGGAAGGA 60.202 41.667 10.09 0.00 38.58 3.36
488 489 4.008074 TGCTAACTCAAGTTGGAAGGAG 57.992 45.455 10.09 0.00 38.58 3.69
489 490 3.646162 TGCTAACTCAAGTTGGAAGGAGA 59.354 43.478 10.09 0.00 38.58 3.71
490 491 3.997681 GCTAACTCAAGTTGGAAGGAGAC 59.002 47.826 10.09 0.00 38.58 3.36
491 492 4.503296 GCTAACTCAAGTTGGAAGGAGACA 60.503 45.833 10.09 0.00 38.58 3.41
492 493 4.713792 AACTCAAGTTGGAAGGAGACAT 57.286 40.909 2.34 0.00 36.80 3.06
493 494 5.825593 AACTCAAGTTGGAAGGAGACATA 57.174 39.130 2.34 0.00 36.80 2.29
494 495 5.153950 ACTCAAGTTGGAAGGAGACATAC 57.846 43.478 2.34 0.00 0.00 2.39
495 496 4.593206 ACTCAAGTTGGAAGGAGACATACA 59.407 41.667 2.34 0.00 0.00 2.29
496 497 4.894784 TCAAGTTGGAAGGAGACATACAC 58.105 43.478 2.34 0.00 0.00 2.90
497 498 4.593206 TCAAGTTGGAAGGAGACATACACT 59.407 41.667 2.34 0.00 0.00 3.55
498 499 5.778241 TCAAGTTGGAAGGAGACATACACTA 59.222 40.000 2.34 0.00 0.00 2.74
499 500 5.923733 AGTTGGAAGGAGACATACACTAG 57.076 43.478 0.00 0.00 0.00 2.57
500 501 5.334421 AGTTGGAAGGAGACATACACTAGT 58.666 41.667 0.00 0.00 0.00 2.57
501 502 5.186021 AGTTGGAAGGAGACATACACTAGTG 59.814 44.000 21.44 21.44 0.00 2.74
502 503 3.447586 TGGAAGGAGACATACACTAGTGC 59.552 47.826 22.90 6.06 0.00 4.40
503 504 3.702045 GGAAGGAGACATACACTAGTGCT 59.298 47.826 22.90 11.06 0.00 4.40
504 505 4.202070 GGAAGGAGACATACACTAGTGCTC 60.202 50.000 22.90 18.44 0.00 4.26
505 506 4.243793 AGGAGACATACACTAGTGCTCT 57.756 45.455 22.90 15.97 0.00 4.09
506 507 3.951037 AGGAGACATACACTAGTGCTCTG 59.049 47.826 22.90 18.16 0.00 3.35
507 508 3.490078 GGAGACATACACTAGTGCTCTGC 60.490 52.174 22.90 16.80 0.00 4.26
508 509 3.092301 AGACATACACTAGTGCTCTGCA 58.908 45.455 22.90 1.87 35.60 4.41
509 510 3.511540 AGACATACACTAGTGCTCTGCAA 59.488 43.478 22.90 0.48 41.47 4.08
510 511 3.854666 ACATACACTAGTGCTCTGCAAG 58.145 45.455 22.90 6.90 41.47 4.01
529 530 3.643978 GCATGCTCGCCCGTGATC 61.644 66.667 11.37 0.00 0.00 2.92
541 544 0.721154 CCGTGATCCATGTGAACGTG 59.279 55.000 0.00 0.00 32.53 4.49
625 640 3.250040 GCATAGAGTGGTTGTTGACGTTT 59.750 43.478 0.00 0.00 0.00 3.60
626 641 4.772434 CATAGAGTGGTTGTTGACGTTTG 58.228 43.478 0.00 0.00 0.00 2.93
627 642 2.706890 AGAGTGGTTGTTGACGTTTGT 58.293 42.857 0.00 0.00 0.00 2.83
629 644 1.470890 AGTGGTTGTTGACGTTTGTGG 59.529 47.619 0.00 0.00 0.00 4.17
630 645 1.469308 GTGGTTGTTGACGTTTGTGGA 59.531 47.619 0.00 0.00 0.00 4.02
631 646 1.469308 TGGTTGTTGACGTTTGTGGAC 59.531 47.619 0.00 0.00 0.00 4.02
649 664 2.096417 GGACGTTTCCACTCAATGAACG 60.096 50.000 5.51 5.51 41.75 3.95
651 666 2.800544 ACGTTTCCACTCAATGAACGAG 59.199 45.455 12.98 0.00 39.62 4.18
704 740 0.388907 CCATGCAGCTTTTTGTCCCG 60.389 55.000 0.00 0.00 0.00 5.14
737 779 3.518998 ACGAGGCCGATCAGACCG 61.519 66.667 0.00 0.00 39.50 4.79
823 865 0.036388 TGAGCTGTCCGGTGGAAATC 60.036 55.000 0.00 0.00 31.38 2.17
824 866 1.079127 AGCTGTCCGGTGGAAATCG 60.079 57.895 0.00 0.00 31.38 3.34
953 1036 1.850515 GCAAACAACACACGACACGAG 60.851 52.381 0.00 0.00 0.00 4.18
954 1037 1.392168 CAAACAACACACGACACGAGT 59.608 47.619 0.00 0.00 0.00 4.18
964 1047 1.585521 GACACGAGTACGGCCATCG 60.586 63.158 2.24 9.37 44.46 3.84
970 1063 1.738350 CGAGTACGGCCATCGATCTAT 59.262 52.381 2.24 0.00 42.43 1.98
971 1064 2.223066 CGAGTACGGCCATCGATCTATC 60.223 54.545 2.24 0.00 42.43 2.08
974 1067 1.178276 ACGGCCATCGATCTATCTCC 58.822 55.000 2.24 0.00 42.43 3.71
976 1069 1.403679 CGGCCATCGATCTATCTCCTC 59.596 57.143 2.24 0.00 42.43 3.71
978 1071 3.682999 CGGCCATCGATCTATCTCCTCTA 60.683 52.174 2.24 0.00 42.43 2.43
979 1072 4.469657 GGCCATCGATCTATCTCCTCTAT 58.530 47.826 0.00 0.00 0.00 1.98
1008 1104 1.079503 GCGAAAAGAAGATGGCGACT 58.920 50.000 0.00 0.00 0.00 4.18
1009 1105 2.268298 GCGAAAAGAAGATGGCGACTA 58.732 47.619 0.00 0.00 0.00 2.59
1010 1106 2.282820 GCGAAAAGAAGATGGCGACTAG 59.717 50.000 0.00 0.00 0.00 2.57
1102 1198 2.454832 CTTCAACGGCTGGCTGAGGA 62.455 60.000 8.50 2.52 0.00 3.71
1103 1199 2.731691 TTCAACGGCTGGCTGAGGAC 62.732 60.000 8.50 0.00 0.00 3.85
1170 1969 2.266055 GCGTCTCCCTCTGGGTTG 59.734 66.667 2.25 0.00 44.74 3.77
1207 2006 1.270147 ACTACAACAACAGGAGGTCGC 60.270 52.381 0.00 0.00 0.00 5.19
1284 2083 4.133796 GCGAACCCTGGCATTGGC 62.134 66.667 2.73 2.73 40.13 4.52
1333 2132 0.038526 CTGCTTCGTTCGGGTACACT 60.039 55.000 0.00 0.00 0.00 3.55
1334 2133 1.200716 CTGCTTCGTTCGGGTACACTA 59.799 52.381 0.00 0.00 0.00 2.74
1340 2148 1.464687 CGTTCGGGTACACTAGACACG 60.465 57.143 0.00 0.00 45.15 4.49
1374 2185 7.530426 TTCTACTAACTTACTCCCTTCGTTT 57.470 36.000 0.00 0.00 0.00 3.60
1382 2193 7.668525 ACTTACTCCCTTCGTTTCAAAATAG 57.331 36.000 0.00 0.00 0.00 1.73
1386 2197 5.240844 ACTCCCTTCGTTTCAAAATAGTTGG 59.759 40.000 0.00 0.00 0.00 3.77
1388 2199 4.234574 CCTTCGTTTCAAAATAGTTGGCC 58.765 43.478 0.00 0.00 0.00 5.36
1405 2216 6.829229 GTTGGCCCAACTTTATACTAAGTT 57.171 37.500 19.45 0.00 46.42 2.66
1406 2217 7.926674 GTTGGCCCAACTTTATACTAAGTTA 57.073 36.000 19.45 0.00 44.33 2.24
1407 2218 7.755591 GTTGGCCCAACTTTATACTAAGTTAC 58.244 38.462 19.45 0.00 44.33 2.50
1441 2259 6.100569 TGGATTATCTATTTTGGAACGGAGGA 59.899 38.462 0.00 0.00 0.00 3.71
1481 2302 6.855914 GCATTGTCGTTTAAGAAGATCAACAA 59.144 34.615 0.00 0.00 0.00 2.83
1485 2306 7.981142 TGTCGTTTAAGAAGATCAACAAGTTT 58.019 30.769 0.00 0.00 0.00 2.66
1541 2392 1.617947 GCTTCCGTCCTCCTCACCAT 61.618 60.000 0.00 0.00 0.00 3.55
1559 2410 3.221771 CCATGACCAACTCCAAGAACAA 58.778 45.455 0.00 0.00 0.00 2.83
1578 2429 0.178958 ACGACACAGAGAGGGAAGGT 60.179 55.000 0.00 0.00 0.00 3.50
1630 2481 1.080093 GTGATCGACACGGCCAAGA 60.080 57.895 2.24 0.00 39.78 3.02
1631 2482 1.078759 GTGATCGACACGGCCAAGAG 61.079 60.000 2.24 0.00 39.78 2.85
2214 3072 0.250295 TCAAGACCAAAGCCGACCAG 60.250 55.000 0.00 0.00 0.00 4.00
2231 3089 0.464870 CAGGGCACAGAGATCAGGAG 59.535 60.000 0.00 0.00 0.00 3.69
2299 3172 2.757099 GTTGGCTGGCTCCATGGG 60.757 66.667 13.02 3.69 35.77 4.00
2300 3173 2.940467 TTGGCTGGCTCCATGGGA 60.940 61.111 13.02 0.00 35.77 4.37
2352 3225 1.810755 TCGTCTAGCGAGTGTCATTGT 59.189 47.619 5.35 0.00 45.68 2.71
2353 3226 2.228103 TCGTCTAGCGAGTGTCATTGTT 59.772 45.455 5.35 0.00 45.68 2.83
2848 4089 6.980593 TGGTCTTAACAAATGATTGAACCAG 58.019 36.000 0.00 0.00 38.94 4.00
2862 4104 5.590530 TTGAACCAGTAAATGTTGCAGTT 57.409 34.783 0.00 0.00 0.00 3.16
2863 4105 5.590530 TGAACCAGTAAATGTTGCAGTTT 57.409 34.783 0.00 0.00 0.00 2.66
2864 4106 6.701145 TGAACCAGTAAATGTTGCAGTTTA 57.299 33.333 0.00 0.00 0.00 2.01
2891 4133 5.879237 TCTACAATGCCACAAAAATCGATC 58.121 37.500 0.00 0.00 0.00 3.69
2894 4136 4.081531 ACAATGCCACAAAAATCGATCCAT 60.082 37.500 0.00 0.00 0.00 3.41
2897 4139 4.244066 TGCCACAAAAATCGATCCATTTG 58.756 39.130 20.68 20.68 38.42 2.32
2914 4156 5.808030 TCCATTTGTTCGTCAAAGGAAAAAC 59.192 36.000 16.74 0.00 46.55 2.43
2915 4157 5.810074 CCATTTGTTCGTCAAAGGAAAAACT 59.190 36.000 16.74 0.00 46.55 2.66
2916 4158 6.019881 CCATTTGTTCGTCAAAGGAAAAACTC 60.020 38.462 16.74 0.00 46.55 3.01
2918 4160 5.479716 TGTTCGTCAAAGGAAAAACTCTC 57.520 39.130 0.00 0.00 0.00 3.20
2920 4162 4.145365 TCGTCAAAGGAAAAACTCTCCA 57.855 40.909 0.00 0.00 35.20 3.86
2921 4163 4.714632 TCGTCAAAGGAAAAACTCTCCAT 58.285 39.130 0.00 0.00 35.20 3.41
2922 4164 5.130350 TCGTCAAAGGAAAAACTCTCCATT 58.870 37.500 0.00 0.00 35.20 3.16
2923 4165 5.592688 TCGTCAAAGGAAAAACTCTCCATTT 59.407 36.000 0.00 0.00 35.20 2.32
2924 4166 6.096282 TCGTCAAAGGAAAAACTCTCCATTTT 59.904 34.615 0.00 0.00 35.20 1.82
2925 4167 6.756542 CGTCAAAGGAAAAACTCTCCATTTTT 59.243 34.615 0.00 0.00 40.94 1.94
2955 4201 7.721399 TGAGAGAAATAGGCTTTATTCATTCCC 59.279 37.037 0.00 0.00 0.00 3.97
2967 4213 6.694445 TTATTCATTCCCCAATGGTTTGTT 57.306 33.333 0.00 0.00 40.08 2.83
2980 6831 6.239458 CCAATGGTTTGTTGGGTACAAGTAAT 60.239 38.462 0.00 0.00 46.81 1.89
3011 6862 5.182487 ACATAATGTAGCCACAAATGACGA 58.818 37.500 14.76 0.00 38.42 4.20
3015 6866 2.563620 TGTAGCCACAAATGACGACCTA 59.436 45.455 0.00 0.00 0.00 3.08
3026 6877 1.946475 GACGACCTACAGCCAGGGTC 61.946 65.000 0.00 0.00 44.16 4.46
3029 6880 1.229082 ACCTACAGCCAGGGTCGAA 60.229 57.895 0.00 0.00 40.29 3.71
3030 6881 1.258445 ACCTACAGCCAGGGTCGAAG 61.258 60.000 0.00 0.00 40.29 3.79
3055 6906 3.801983 GCCTTAGCTAACTGATGAGCCTC 60.802 52.174 0.86 0.00 39.65 4.70
3060 6911 3.118811 AGCTAACTGATGAGCCTCAGAAC 60.119 47.826 13.69 0.00 44.48 3.01
3071 6922 0.531532 CCTCAGAACTATGCCGCCTG 60.532 60.000 0.00 0.00 0.00 4.85
3082 6933 1.153958 GCCGCCTGTTTTCATGCTC 60.154 57.895 0.00 0.00 38.87 4.26
3109 6961 0.252239 ATCCCTGAAAAAGTGGCCCC 60.252 55.000 0.00 0.00 0.00 5.80
3114 6966 3.263503 GAAAAAGTGGCCCCGCGAC 62.264 63.158 8.23 0.00 37.53 5.19
3131 6983 1.587034 CGACGTTTAATCTCGGGAAGC 59.413 52.381 0.00 0.00 0.00 3.86
3165 7017 1.939974 GCATGGAGCGTCAGTATTGA 58.060 50.000 0.00 0.00 0.00 2.57
3166 7018 2.487934 GCATGGAGCGTCAGTATTGAT 58.512 47.619 0.00 0.00 35.39 2.57
3170 7022 5.289675 GCATGGAGCGTCAGTATTGATATAC 59.710 44.000 0.00 0.00 37.48 1.47
3176 7028 7.698550 GGAGCGTCAGTATTGATATACAGTATG 59.301 40.741 3.03 0.00 39.30 2.39
3179 7031 7.216505 GCGTCAGTATTGATATACAGTATGTCG 59.783 40.741 11.53 1.51 42.10 4.35
3188 7040 1.878522 CAGTATGTCGCCGCCTCAC 60.879 63.158 0.00 0.00 0.00 3.51
3195 7047 2.972505 CGCCGCCTCACAACAGTT 60.973 61.111 0.00 0.00 0.00 3.16
3200 7052 2.489971 CCGCCTCACAACAGTTAGAAA 58.510 47.619 0.00 0.00 0.00 2.52
3201 7053 2.480419 CCGCCTCACAACAGTTAGAAAG 59.520 50.000 0.00 0.00 0.00 2.62
3203 7055 2.226674 GCCTCACAACAGTTAGAAAGCC 59.773 50.000 0.00 0.00 0.00 4.35
3204 7056 2.480419 CCTCACAACAGTTAGAAAGCCG 59.520 50.000 0.00 0.00 0.00 5.52
3206 7058 0.865769 ACAACAGTTAGAAAGCCGCG 59.134 50.000 0.00 0.00 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.132111 GGGTCATGGACAGTTTGTTGTTT 59.868 43.478 0.00 0.00 33.68 2.83
1 2 2.693074 GGGTCATGGACAGTTTGTTGTT 59.307 45.455 0.00 0.00 33.68 2.83
2 3 2.306847 GGGTCATGGACAGTTTGTTGT 58.693 47.619 0.00 0.00 33.68 3.32
3 4 2.294233 CTGGGTCATGGACAGTTTGTTG 59.706 50.000 0.00 0.00 33.68 3.33
4 5 2.174639 TCTGGGTCATGGACAGTTTGTT 59.825 45.455 10.52 0.00 33.68 2.83
5 6 1.774254 TCTGGGTCATGGACAGTTTGT 59.226 47.619 10.52 0.00 33.68 2.83
6 7 2.566833 TCTGGGTCATGGACAGTTTG 57.433 50.000 10.52 0.00 33.68 2.93
7 8 3.074390 TCAATCTGGGTCATGGACAGTTT 59.926 43.478 10.52 7.15 33.68 2.66
8 9 2.644299 TCAATCTGGGTCATGGACAGTT 59.356 45.455 10.52 2.50 33.68 3.16
9 10 2.269023 TCAATCTGGGTCATGGACAGT 58.731 47.619 10.52 0.00 33.68 3.55
10 11 3.276857 CTTCAATCTGGGTCATGGACAG 58.723 50.000 0.00 0.00 33.68 3.51
11 12 2.644299 ACTTCAATCTGGGTCATGGACA 59.356 45.455 0.00 0.00 33.68 4.02
12 13 3.274288 GACTTCAATCTGGGTCATGGAC 58.726 50.000 0.00 0.00 0.00 4.02
13 14 2.239654 GGACTTCAATCTGGGTCATGGA 59.760 50.000 0.00 0.00 0.00 3.41
14 15 2.240667 AGGACTTCAATCTGGGTCATGG 59.759 50.000 0.00 0.00 0.00 3.66
15 16 3.641434 AGGACTTCAATCTGGGTCATG 57.359 47.619 0.00 0.00 0.00 3.07
16 17 3.588842 TGAAGGACTTCAATCTGGGTCAT 59.411 43.478 12.04 0.00 45.56 3.06
17 18 2.978978 TGAAGGACTTCAATCTGGGTCA 59.021 45.455 12.04 0.00 45.56 4.02
18 19 3.703001 TGAAGGACTTCAATCTGGGTC 57.297 47.619 12.04 0.00 45.56 4.46
27 28 9.269512 ACTTGAGGAAGTTCATGAAGGACTTCA 62.270 40.741 27.76 20.38 46.88 3.02
28 29 4.899502 TGAGGAAGTTCATGAAGGACTTC 58.100 43.478 22.45 22.45 45.26 3.01
29 30 4.982241 TGAGGAAGTTCATGAAGGACTT 57.018 40.909 8.80 9.73 36.40 3.01
30 31 4.349342 ACTTGAGGAAGTTCATGAAGGACT 59.651 41.667 18.63 0.00 39.56 3.85
31 32 4.646572 ACTTGAGGAAGTTCATGAAGGAC 58.353 43.478 18.63 0.00 39.56 3.85
32 33 4.347876 TGACTTGAGGAAGTTCATGAAGGA 59.652 41.667 18.63 4.59 42.80 3.36
33 34 4.645535 TGACTTGAGGAAGTTCATGAAGG 58.354 43.478 18.63 3.88 42.80 3.46
34 35 6.609533 CAATGACTTGAGGAAGTTCATGAAG 58.390 40.000 14.01 14.01 42.80 3.02
35 36 5.048504 GCAATGACTTGAGGAAGTTCATGAA 60.049 40.000 3.38 3.38 42.80 2.57
36 37 4.456911 GCAATGACTTGAGGAAGTTCATGA 59.543 41.667 5.01 0.00 42.80 3.07
37 38 4.380233 GGCAATGACTTGAGGAAGTTCATG 60.380 45.833 5.01 0.00 42.80 3.07
38 39 3.760684 GGCAATGACTTGAGGAAGTTCAT 59.239 43.478 5.01 0.00 42.80 2.57
39 40 3.149196 GGCAATGACTTGAGGAAGTTCA 58.851 45.455 5.01 0.00 42.80 3.18
40 41 2.160417 CGGCAATGACTTGAGGAAGTTC 59.840 50.000 0.00 0.00 42.80 3.01
41 42 2.154462 CGGCAATGACTTGAGGAAGTT 58.846 47.619 0.00 0.00 42.80 2.66
42 43 1.813513 CGGCAATGACTTGAGGAAGT 58.186 50.000 0.00 0.00 45.59 3.01
43 44 0.449388 GCGGCAATGACTTGAGGAAG 59.551 55.000 0.00 0.00 34.04 3.46
44 45 0.960364 GGCGGCAATGACTTGAGGAA 60.960 55.000 3.07 0.00 34.04 3.36
45 46 1.377202 GGCGGCAATGACTTGAGGA 60.377 57.895 3.07 0.00 34.04 3.71
46 47 2.753966 CGGCGGCAATGACTTGAGG 61.754 63.158 10.53 0.00 34.04 3.86
47 48 1.091771 ATCGGCGGCAATGACTTGAG 61.092 55.000 10.53 0.00 34.04 3.02
48 49 0.176910 TATCGGCGGCAATGACTTGA 59.823 50.000 10.53 0.00 34.04 3.02
49 50 0.304705 GTATCGGCGGCAATGACTTG 59.695 55.000 10.53 0.00 35.36 3.16
50 51 0.107897 TGTATCGGCGGCAATGACTT 60.108 50.000 10.53 0.00 0.00 3.01
51 52 0.106708 ATGTATCGGCGGCAATGACT 59.893 50.000 10.53 0.00 0.00 3.41
52 53 0.235665 CATGTATCGGCGGCAATGAC 59.764 55.000 10.53 1.36 0.00 3.06
53 54 0.179059 ACATGTATCGGCGGCAATGA 60.179 50.000 10.53 0.00 0.00 2.57
54 55 0.041047 CACATGTATCGGCGGCAATG 60.041 55.000 10.53 8.98 0.00 2.82
55 56 1.165907 CCACATGTATCGGCGGCAAT 61.166 55.000 10.53 0.00 0.00 3.56
56 57 1.817520 CCACATGTATCGGCGGCAA 60.818 57.895 10.53 0.00 0.00 4.52
57 58 2.203001 CCACATGTATCGGCGGCA 60.203 61.111 10.53 4.50 0.00 5.69
58 59 2.203015 ACCACATGTATCGGCGGC 60.203 61.111 7.21 0.00 0.00 6.53
59 60 1.151777 GACACCACATGTATCGGCGG 61.152 60.000 7.21 0.00 43.56 6.13
60 61 1.479420 CGACACCACATGTATCGGCG 61.479 60.000 0.00 0.00 43.56 6.46
61 62 0.459585 ACGACACCACATGTATCGGC 60.460 55.000 19.07 5.05 43.56 5.54
62 63 2.456989 GTACGACACCACATGTATCGG 58.543 52.381 19.07 11.24 43.56 4.18
74 75 1.881973 TGTCTACAGTGGGTACGACAC 59.118 52.381 10.38 10.38 40.38 3.67
75 76 2.275134 TGTCTACAGTGGGTACGACA 57.725 50.000 0.00 0.00 40.38 4.35
76 77 2.098770 GGATGTCTACAGTGGGTACGAC 59.901 54.545 0.00 0.00 37.31 4.34
77 78 2.291089 TGGATGTCTACAGTGGGTACGA 60.291 50.000 0.00 0.00 0.00 3.43
78 79 2.097036 TGGATGTCTACAGTGGGTACG 58.903 52.381 0.00 0.00 0.00 3.67
79 80 2.829720 TGTGGATGTCTACAGTGGGTAC 59.170 50.000 0.00 0.00 32.24 3.34
80 81 3.178412 TGTGGATGTCTACAGTGGGTA 57.822 47.619 0.00 0.00 32.24 3.69
81 82 2.024176 TGTGGATGTCTACAGTGGGT 57.976 50.000 0.00 0.00 32.24 4.51
82 83 2.038426 TGTTGTGGATGTCTACAGTGGG 59.962 50.000 0.00 0.00 38.56 4.61
83 84 3.401033 TGTTGTGGATGTCTACAGTGG 57.599 47.619 0.00 0.00 38.56 4.00
84 85 5.460091 CGATATGTTGTGGATGTCTACAGTG 59.540 44.000 0.00 0.00 38.56 3.66
85 86 5.451937 CCGATATGTTGTGGATGTCTACAGT 60.452 44.000 0.00 0.00 38.56 3.55
86 87 4.984785 CCGATATGTTGTGGATGTCTACAG 59.015 45.833 0.00 0.00 38.56 2.74
87 88 4.739436 GCCGATATGTTGTGGATGTCTACA 60.739 45.833 0.00 0.00 35.49 2.74
88 89 3.741344 GCCGATATGTTGTGGATGTCTAC 59.259 47.826 0.00 0.00 0.00 2.59
89 90 3.552068 CGCCGATATGTTGTGGATGTCTA 60.552 47.826 0.00 0.00 0.00 2.59
90 91 2.803133 CGCCGATATGTTGTGGATGTCT 60.803 50.000 0.00 0.00 0.00 3.41
91 92 1.526887 CGCCGATATGTTGTGGATGTC 59.473 52.381 0.00 0.00 0.00 3.06
92 93 1.138069 TCGCCGATATGTTGTGGATGT 59.862 47.619 0.00 0.00 0.00 3.06
93 94 1.526887 GTCGCCGATATGTTGTGGATG 59.473 52.381 0.00 0.00 0.00 3.51
94 95 1.540363 GGTCGCCGATATGTTGTGGAT 60.540 52.381 0.00 0.00 0.00 3.41
95 96 0.179094 GGTCGCCGATATGTTGTGGA 60.179 55.000 0.00 0.00 0.00 4.02
96 97 2.307363 GGTCGCCGATATGTTGTGG 58.693 57.895 0.00 0.00 0.00 4.17
110 111 3.470567 GTTCAGAGCGCACGGTCG 61.471 66.667 11.47 11.08 46.10 4.79
111 112 3.112709 GGTTCAGAGCGCACGGTC 61.113 66.667 11.47 13.96 42.36 4.79
112 113 3.575351 GAGGTTCAGAGCGCACGGT 62.575 63.158 11.47 0.00 0.00 4.83
113 114 2.811317 GAGGTTCAGAGCGCACGG 60.811 66.667 11.47 3.84 0.00 4.94
114 115 2.049156 TGAGGTTCAGAGCGCACG 60.049 61.111 11.47 0.00 0.00 5.34
122 123 1.374758 GTGGTCGCCTGAGGTTCAG 60.375 63.158 0.00 0.00 43.91 3.02
123 124 2.741092 GTGGTCGCCTGAGGTTCA 59.259 61.111 0.00 0.00 0.00 3.18
124 125 2.047179 GGTGGTCGCCTGAGGTTC 60.047 66.667 0.00 0.00 0.00 3.62
125 126 4.003788 CGGTGGTCGCCTGAGGTT 62.004 66.667 0.00 0.00 0.00 3.50
133 134 4.160635 CATTTCGCCGGTGGTCGC 62.161 66.667 16.49 0.00 37.59 5.19
134 135 4.160635 GCATTTCGCCGGTGGTCG 62.161 66.667 16.49 3.66 38.88 4.79
135 136 2.746277 AGCATTTCGCCGGTGGTC 60.746 61.111 16.49 0.08 44.04 4.02
136 137 3.055719 CAGCATTTCGCCGGTGGT 61.056 61.111 16.49 0.74 44.04 4.16
137 138 4.481112 GCAGCATTTCGCCGGTGG 62.481 66.667 16.49 1.03 44.04 4.61
138 139 4.817063 CGCAGCATTTCGCCGGTG 62.817 66.667 9.28 9.28 44.04 4.94
141 142 3.321315 TTTCCGCAGCATTTCGCCG 62.321 57.895 0.00 0.00 44.04 6.46
142 143 1.801512 GTTTCCGCAGCATTTCGCC 60.802 57.895 0.00 0.00 44.04 5.54
143 144 0.387239 AAGTTTCCGCAGCATTTCGC 60.387 50.000 0.00 0.00 42.91 4.70
144 145 1.330306 CAAGTTTCCGCAGCATTTCG 58.670 50.000 0.00 0.00 0.00 3.46
145 146 1.000274 ACCAAGTTTCCGCAGCATTTC 60.000 47.619 0.00 0.00 0.00 2.17
146 147 1.039856 ACCAAGTTTCCGCAGCATTT 58.960 45.000 0.00 0.00 0.00 2.32
147 148 1.904287 TACCAAGTTTCCGCAGCATT 58.096 45.000 0.00 0.00 0.00 3.56
148 149 1.539827 GTTACCAAGTTTCCGCAGCAT 59.460 47.619 0.00 0.00 0.00 3.79
149 150 0.948678 GTTACCAAGTTTCCGCAGCA 59.051 50.000 0.00 0.00 0.00 4.41
150 151 0.948678 TGTTACCAAGTTTCCGCAGC 59.051 50.000 0.00 0.00 0.00 5.25
151 152 2.601266 CGTTGTTACCAAGTTTCCGCAG 60.601 50.000 0.00 0.00 0.00 5.18
152 153 1.331138 CGTTGTTACCAAGTTTCCGCA 59.669 47.619 0.00 0.00 0.00 5.69
153 154 1.334329 CCGTTGTTACCAAGTTTCCGC 60.334 52.381 0.00 0.00 0.00 5.54
154 155 2.211806 TCCGTTGTTACCAAGTTTCCG 58.788 47.619 0.00 0.00 0.00 4.30
155 156 2.031420 GCTCCGTTGTTACCAAGTTTCC 60.031 50.000 0.00 0.00 0.00 3.13
156 157 2.614983 TGCTCCGTTGTTACCAAGTTTC 59.385 45.455 0.00 0.00 0.00 2.78
157 158 2.645802 TGCTCCGTTGTTACCAAGTTT 58.354 42.857 0.00 0.00 0.00 2.66
158 159 2.335316 TGCTCCGTTGTTACCAAGTT 57.665 45.000 0.00 0.00 0.00 2.66
159 160 2.151202 CATGCTCCGTTGTTACCAAGT 58.849 47.619 0.00 0.00 0.00 3.16
160 161 1.468520 CCATGCTCCGTTGTTACCAAG 59.531 52.381 0.00 0.00 0.00 3.61
161 162 1.529226 CCATGCTCCGTTGTTACCAA 58.471 50.000 0.00 0.00 0.00 3.67
162 163 0.322098 CCCATGCTCCGTTGTTACCA 60.322 55.000 0.00 0.00 0.00 3.25
163 164 0.035820 TCCCATGCTCCGTTGTTACC 60.036 55.000 0.00 0.00 0.00 2.85
164 165 1.338769 ACTCCCATGCTCCGTTGTTAC 60.339 52.381 0.00 0.00 0.00 2.50
165 166 0.981183 ACTCCCATGCTCCGTTGTTA 59.019 50.000 0.00 0.00 0.00 2.41
166 167 0.981183 TACTCCCATGCTCCGTTGTT 59.019 50.000 0.00 0.00 0.00 2.83
167 168 1.139058 GATACTCCCATGCTCCGTTGT 59.861 52.381 0.00 0.00 0.00 3.32
168 169 1.869754 CGATACTCCCATGCTCCGTTG 60.870 57.143 0.00 0.00 0.00 4.10
169 170 0.389391 CGATACTCCCATGCTCCGTT 59.611 55.000 0.00 0.00 0.00 4.44
170 171 1.464376 CCGATACTCCCATGCTCCGT 61.464 60.000 0.00 0.00 0.00 4.69
171 172 1.179174 TCCGATACTCCCATGCTCCG 61.179 60.000 0.00 0.00 0.00 4.63
172 173 1.048601 TTCCGATACTCCCATGCTCC 58.951 55.000 0.00 0.00 0.00 4.70
173 174 2.910688 TTTCCGATACTCCCATGCTC 57.089 50.000 0.00 0.00 0.00 4.26
174 175 3.644966 TTTTTCCGATACTCCCATGCT 57.355 42.857 0.00 0.00 0.00 3.79
205 206 9.903682 CAACATTCTTTGACAAGTTCATATCTT 57.096 29.630 0.00 0.00 32.84 2.40
206 207 9.288576 TCAACATTCTTTGACAAGTTCATATCT 57.711 29.630 0.00 0.00 32.84 1.98
207 208 9.897744 TTCAACATTCTTTGACAAGTTCATATC 57.102 29.630 0.00 0.00 35.18 1.63
208 209 9.683069 GTTCAACATTCTTTGACAAGTTCATAT 57.317 29.630 0.00 0.00 35.18 1.78
209 210 8.681806 TGTTCAACATTCTTTGACAAGTTCATA 58.318 29.630 0.00 0.00 35.18 2.15
210 211 7.546358 TGTTCAACATTCTTTGACAAGTTCAT 58.454 30.769 0.00 0.00 35.18 2.57
211 212 6.918626 TGTTCAACATTCTTTGACAAGTTCA 58.081 32.000 0.00 0.00 35.18 3.18
212 213 6.020360 GCTGTTCAACATTCTTTGACAAGTTC 60.020 38.462 0.00 0.00 35.18 3.01
213 214 5.807011 GCTGTTCAACATTCTTTGACAAGTT 59.193 36.000 0.00 0.00 35.18 2.66
214 215 5.105797 TGCTGTTCAACATTCTTTGACAAGT 60.106 36.000 0.00 0.00 35.18 3.16
215 216 5.230726 GTGCTGTTCAACATTCTTTGACAAG 59.769 40.000 0.00 0.00 35.18 3.16
216 217 5.101628 GTGCTGTTCAACATTCTTTGACAA 58.898 37.500 0.00 0.00 35.18 3.18
217 218 4.157472 TGTGCTGTTCAACATTCTTTGACA 59.843 37.500 0.00 0.00 35.18 3.58
218 219 4.671377 TGTGCTGTTCAACATTCTTTGAC 58.329 39.130 0.00 0.00 35.18 3.18
219 220 4.979943 TGTGCTGTTCAACATTCTTTGA 57.020 36.364 0.00 0.00 33.55 2.69
220 221 6.406093 TTTTGTGCTGTTCAACATTCTTTG 57.594 33.333 0.00 0.00 0.00 2.77
267 268 8.272866 GCAAAGTTTTACTCGCACATTTATTTT 58.727 29.630 0.00 0.00 0.00 1.82
268 269 7.095816 GGCAAAGTTTTACTCGCACATTTATTT 60.096 33.333 0.00 0.00 0.00 1.40
269 270 6.364976 GGCAAAGTTTTACTCGCACATTTATT 59.635 34.615 0.00 0.00 0.00 1.40
270 271 5.861787 GGCAAAGTTTTACTCGCACATTTAT 59.138 36.000 0.00 0.00 0.00 1.40
271 272 5.216648 GGCAAAGTTTTACTCGCACATTTA 58.783 37.500 0.00 0.00 0.00 1.40
272 273 4.048504 GGCAAAGTTTTACTCGCACATTT 58.951 39.130 0.00 0.00 0.00 2.32
273 274 3.638484 GGCAAAGTTTTACTCGCACATT 58.362 40.909 0.00 0.00 0.00 2.71
274 275 2.350388 CGGCAAAGTTTTACTCGCACAT 60.350 45.455 0.00 0.00 0.00 3.21
275 276 1.003331 CGGCAAAGTTTTACTCGCACA 60.003 47.619 0.00 0.00 0.00 4.57
276 277 1.662026 CCGGCAAAGTTTTACTCGCAC 60.662 52.381 0.00 0.00 0.00 5.34
277 278 0.589223 CCGGCAAAGTTTTACTCGCA 59.411 50.000 0.00 0.00 0.00 5.10
278 279 0.869730 TCCGGCAAAGTTTTACTCGC 59.130 50.000 0.00 0.00 0.00 5.03
279 280 3.551551 CTTTCCGGCAAAGTTTTACTCG 58.448 45.455 14.59 0.00 37.33 4.18
280 281 3.317149 ACCTTTCCGGCAAAGTTTTACTC 59.683 43.478 18.79 0.00 40.15 2.59
281 282 3.293337 ACCTTTCCGGCAAAGTTTTACT 58.707 40.909 18.79 0.00 40.15 2.24
282 283 3.720949 ACCTTTCCGGCAAAGTTTTAC 57.279 42.857 18.79 0.00 40.15 2.01
283 284 4.739587 AAACCTTTCCGGCAAAGTTTTA 57.260 36.364 18.79 0.00 35.53 1.52
284 285 3.620427 AAACCTTTCCGGCAAAGTTTT 57.380 38.095 18.79 15.73 40.15 2.43
285 286 3.266636 CAAAACCTTTCCGGCAAAGTTT 58.733 40.909 18.79 14.14 40.15 2.66
286 287 2.235155 ACAAAACCTTTCCGGCAAAGTT 59.765 40.909 18.79 9.60 40.15 2.66
287 288 1.828595 ACAAAACCTTTCCGGCAAAGT 59.171 42.857 18.79 4.28 40.15 2.66
288 289 2.469826 GACAAAACCTTTCCGGCAAAG 58.530 47.619 15.43 15.43 41.30 2.77
289 290 1.137282 GGACAAAACCTTTCCGGCAAA 59.863 47.619 0.00 0.00 35.61 3.68
290 291 0.747852 GGACAAAACCTTTCCGGCAA 59.252 50.000 0.00 0.00 35.61 4.52
291 292 0.395862 TGGACAAAACCTTTCCGGCA 60.396 50.000 0.00 0.00 35.61 5.69
292 293 0.031585 GTGGACAAAACCTTTCCGGC 59.968 55.000 0.00 0.00 35.61 6.13
293 294 0.309612 CGTGGACAAAACCTTTCCGG 59.690 55.000 0.00 0.00 39.35 5.14
294 295 1.003223 GACGTGGACAAAACCTTTCCG 60.003 52.381 0.00 0.00 31.38 4.30
295 296 1.335810 GGACGTGGACAAAACCTTTCC 59.664 52.381 0.00 0.00 0.00 3.13
296 297 1.335810 GGGACGTGGACAAAACCTTTC 59.664 52.381 0.00 0.00 0.00 2.62
297 298 1.064240 AGGGACGTGGACAAAACCTTT 60.064 47.619 0.00 0.00 0.00 3.11
298 299 0.549469 AGGGACGTGGACAAAACCTT 59.451 50.000 0.00 0.00 0.00 3.50
299 300 0.179029 CAGGGACGTGGACAAAACCT 60.179 55.000 0.00 0.00 0.00 3.50
300 301 0.179040 TCAGGGACGTGGACAAAACC 60.179 55.000 0.00 0.00 0.00 3.27
301 302 1.670791 TTCAGGGACGTGGACAAAAC 58.329 50.000 0.00 0.00 0.00 2.43
302 303 2.421751 TTTCAGGGACGTGGACAAAA 57.578 45.000 0.00 0.00 0.00 2.44
303 304 2.649531 ATTTCAGGGACGTGGACAAA 57.350 45.000 0.00 0.00 0.00 2.83
304 305 2.369203 TGTATTTCAGGGACGTGGACAA 59.631 45.455 0.00 0.00 0.00 3.18
305 306 1.972075 TGTATTTCAGGGACGTGGACA 59.028 47.619 0.00 0.00 0.00 4.02
306 307 2.754946 TGTATTTCAGGGACGTGGAC 57.245 50.000 0.00 0.00 0.00 4.02
307 308 2.679639 GCATGTATTTCAGGGACGTGGA 60.680 50.000 0.00 0.00 31.94 4.02
308 309 1.670811 GCATGTATTTCAGGGACGTGG 59.329 52.381 0.00 0.00 31.94 4.94
309 310 1.670811 GGCATGTATTTCAGGGACGTG 59.329 52.381 0.00 0.00 33.98 4.49
310 311 1.280710 TGGCATGTATTTCAGGGACGT 59.719 47.619 0.00 0.00 0.00 4.34
311 312 2.036958 TGGCATGTATTTCAGGGACG 57.963 50.000 0.00 0.00 0.00 4.79
312 313 3.429410 GCTTTGGCATGTATTTCAGGGAC 60.429 47.826 0.00 0.00 38.54 4.46
313 314 2.760092 GCTTTGGCATGTATTTCAGGGA 59.240 45.455 0.00 0.00 38.54 4.20
314 315 2.762327 AGCTTTGGCATGTATTTCAGGG 59.238 45.455 0.00 0.00 41.70 4.45
315 316 4.178540 CAAGCTTTGGCATGTATTTCAGG 58.821 43.478 0.00 0.00 41.70 3.86
316 317 4.624024 CACAAGCTTTGGCATGTATTTCAG 59.376 41.667 0.00 0.00 46.62 3.02
317 318 4.558178 CACAAGCTTTGGCATGTATTTCA 58.442 39.130 0.00 0.00 46.62 2.69
318 319 3.368843 GCACAAGCTTTGGCATGTATTTC 59.631 43.478 12.91 0.00 46.62 2.17
319 320 3.328505 GCACAAGCTTTGGCATGTATTT 58.671 40.909 12.91 0.00 46.62 1.40
320 321 2.963432 GCACAAGCTTTGGCATGTATT 58.037 42.857 12.91 0.00 46.62 1.89
321 322 2.660189 GCACAAGCTTTGGCATGTAT 57.340 45.000 12.91 0.00 46.62 2.29
339 340 1.863454 CATTGTGAGATGCCGAGTAGC 59.137 52.381 0.00 0.00 0.00 3.58
340 341 2.862536 CACATTGTGAGATGCCGAGTAG 59.137 50.000 11.45 0.00 35.23 2.57
341 342 2.892374 CACATTGTGAGATGCCGAGTA 58.108 47.619 11.45 0.00 35.23 2.59
342 343 1.730501 CACATTGTGAGATGCCGAGT 58.269 50.000 11.45 0.00 35.23 4.18
343 344 0.376152 GCACATTGTGAGATGCCGAG 59.624 55.000 20.77 0.00 35.23 4.63
344 345 0.321475 TGCACATTGTGAGATGCCGA 60.321 50.000 20.77 0.00 37.26 5.54
345 346 0.522626 TTGCACATTGTGAGATGCCG 59.477 50.000 20.77 0.00 37.26 5.69
346 347 2.602878 CTTTGCACATTGTGAGATGCC 58.397 47.619 20.77 2.15 37.26 4.40
347 348 1.990563 GCTTTGCACATTGTGAGATGC 59.009 47.619 20.77 15.34 35.23 3.91
348 349 3.291809 TGCTTTGCACATTGTGAGATG 57.708 42.857 20.77 10.25 35.23 2.90
349 350 4.053295 GTTTGCTTTGCACATTGTGAGAT 58.947 39.130 20.77 0.00 38.71 2.75
350 351 3.130869 AGTTTGCTTTGCACATTGTGAGA 59.869 39.130 20.77 4.80 38.71 3.27
351 352 3.450578 AGTTTGCTTTGCACATTGTGAG 58.549 40.909 20.77 9.95 38.71 3.51
352 353 3.523606 AGTTTGCTTTGCACATTGTGA 57.476 38.095 20.77 3.12 38.71 3.58
353 354 4.603231 AAAGTTTGCTTTGCACATTGTG 57.397 36.364 12.54 12.54 42.78 3.33
367 368 3.820467 TCTAGGATGGTGTGCAAAGTTTG 59.180 43.478 11.41 11.41 0.00 2.93
368 369 4.098914 TCTAGGATGGTGTGCAAAGTTT 57.901 40.909 0.00 0.00 0.00 2.66
369 370 3.788227 TCTAGGATGGTGTGCAAAGTT 57.212 42.857 0.00 0.00 0.00 2.66
370 371 3.679917 CGATCTAGGATGGTGTGCAAAGT 60.680 47.826 0.00 0.00 0.00 2.66
371 372 2.868583 CGATCTAGGATGGTGTGCAAAG 59.131 50.000 0.00 0.00 0.00 2.77
372 373 2.499693 TCGATCTAGGATGGTGTGCAAA 59.500 45.455 0.00 0.00 0.00 3.68
373 374 2.101415 CTCGATCTAGGATGGTGTGCAA 59.899 50.000 0.00 0.00 0.00 4.08
374 375 1.683385 CTCGATCTAGGATGGTGTGCA 59.317 52.381 0.00 0.00 0.00 4.57
375 376 1.000283 CCTCGATCTAGGATGGTGTGC 60.000 57.143 7.53 0.00 39.15 4.57
376 377 1.615883 CCCTCGATCTAGGATGGTGTG 59.384 57.143 14.78 0.00 39.15 3.82
377 378 1.481428 CCCCTCGATCTAGGATGGTGT 60.481 57.143 14.78 0.00 39.15 4.16
378 379 1.261480 CCCCTCGATCTAGGATGGTG 58.739 60.000 14.78 0.00 39.15 4.17
379 380 0.115349 CCCCCTCGATCTAGGATGGT 59.885 60.000 14.78 0.00 39.15 3.55
380 381 2.983512 CCCCCTCGATCTAGGATGG 58.016 63.158 14.78 10.48 39.15 3.51
395 396 7.867305 TTATTTTTGTTTTGTCTTTTCCCCC 57.133 32.000 0.00 0.00 0.00 5.40
453 454 8.850156 ACTTGAGTTAGCATGTTTCACTTATTT 58.150 29.630 0.00 0.00 0.00 1.40
454 455 8.396272 ACTTGAGTTAGCATGTTTCACTTATT 57.604 30.769 0.00 0.00 0.00 1.40
455 456 7.986085 ACTTGAGTTAGCATGTTTCACTTAT 57.014 32.000 0.00 0.00 0.00 1.73
456 457 7.255104 CCAACTTGAGTTAGCATGTTTCACTTA 60.255 37.037 0.00 0.00 36.32 2.24
457 458 6.460123 CCAACTTGAGTTAGCATGTTTCACTT 60.460 38.462 0.00 0.00 36.32 3.16
458 459 5.009010 CCAACTTGAGTTAGCATGTTTCACT 59.991 40.000 0.00 0.00 36.32 3.41
459 460 5.008613 TCCAACTTGAGTTAGCATGTTTCAC 59.991 40.000 0.00 0.00 36.32 3.18
460 461 5.129634 TCCAACTTGAGTTAGCATGTTTCA 58.870 37.500 0.00 0.00 36.32 2.69
461 462 5.689383 TCCAACTTGAGTTAGCATGTTTC 57.311 39.130 0.00 0.00 36.32 2.78
462 463 5.010012 CCTTCCAACTTGAGTTAGCATGTTT 59.990 40.000 0.00 0.00 36.32 2.83
463 464 4.520492 CCTTCCAACTTGAGTTAGCATGTT 59.480 41.667 0.00 0.00 36.32 2.71
464 465 4.074970 CCTTCCAACTTGAGTTAGCATGT 58.925 43.478 0.00 0.00 36.32 3.21
465 466 4.326826 TCCTTCCAACTTGAGTTAGCATG 58.673 43.478 0.00 0.00 36.32 4.06
466 467 4.287067 TCTCCTTCCAACTTGAGTTAGCAT 59.713 41.667 0.00 0.00 36.32 3.79
467 468 3.646162 TCTCCTTCCAACTTGAGTTAGCA 59.354 43.478 0.00 0.00 36.32 3.49
468 469 3.997681 GTCTCCTTCCAACTTGAGTTAGC 59.002 47.826 0.00 0.00 36.32 3.09
469 470 5.215252 TGTCTCCTTCCAACTTGAGTTAG 57.785 43.478 0.00 0.00 36.32 2.34
470 471 5.825593 ATGTCTCCTTCCAACTTGAGTTA 57.174 39.130 0.00 0.00 36.32 2.24
471 472 4.713792 ATGTCTCCTTCCAACTTGAGTT 57.286 40.909 0.00 0.00 39.12 3.01
472 473 4.593206 TGTATGTCTCCTTCCAACTTGAGT 59.407 41.667 0.00 0.00 0.00 3.41
473 474 4.932200 GTGTATGTCTCCTTCCAACTTGAG 59.068 45.833 0.00 0.00 0.00 3.02
474 475 4.593206 AGTGTATGTCTCCTTCCAACTTGA 59.407 41.667 0.00 0.00 0.00 3.02
475 476 4.899502 AGTGTATGTCTCCTTCCAACTTG 58.100 43.478 0.00 0.00 0.00 3.16
476 477 5.780793 ACTAGTGTATGTCTCCTTCCAACTT 59.219 40.000 0.00 0.00 0.00 2.66
477 478 5.186021 CACTAGTGTATGTCTCCTTCCAACT 59.814 44.000 15.06 0.00 0.00 3.16
478 479 5.411781 CACTAGTGTATGTCTCCTTCCAAC 58.588 45.833 15.06 0.00 0.00 3.77
479 480 4.081642 GCACTAGTGTATGTCTCCTTCCAA 60.082 45.833 23.44 0.00 0.00 3.53
480 481 3.447586 GCACTAGTGTATGTCTCCTTCCA 59.552 47.826 23.44 0.00 0.00 3.53
481 482 3.702045 AGCACTAGTGTATGTCTCCTTCC 59.298 47.826 23.44 2.73 0.00 3.46
482 483 4.642885 AGAGCACTAGTGTATGTCTCCTTC 59.357 45.833 23.44 2.92 0.00 3.46
483 484 4.400884 CAGAGCACTAGTGTATGTCTCCTT 59.599 45.833 23.44 4.45 0.00 3.36
484 485 3.951037 CAGAGCACTAGTGTATGTCTCCT 59.049 47.826 23.44 9.65 0.00 3.69
485 486 3.490078 GCAGAGCACTAGTGTATGTCTCC 60.490 52.174 23.44 8.02 0.00 3.71
486 487 3.129462 TGCAGAGCACTAGTGTATGTCTC 59.871 47.826 23.44 19.04 31.71 3.36
487 488 3.092301 TGCAGAGCACTAGTGTATGTCT 58.908 45.455 23.44 16.42 31.71 3.41
488 489 3.510388 TGCAGAGCACTAGTGTATGTC 57.490 47.619 23.44 14.65 31.71 3.06
489 490 3.854666 CTTGCAGAGCACTAGTGTATGT 58.145 45.455 23.44 9.13 38.71 2.29
512 513 3.643978 GATCACGGGCGAGCATGC 61.644 66.667 10.51 10.51 0.00 4.06
513 514 2.969238 GGATCACGGGCGAGCATG 60.969 66.667 0.00 0.00 0.00 4.06
514 515 2.811514 ATGGATCACGGGCGAGCAT 61.812 57.895 0.00 0.00 0.00 3.79
515 516 3.469970 ATGGATCACGGGCGAGCA 61.470 61.111 0.00 0.00 0.00 4.26
516 517 2.969238 CATGGATCACGGGCGAGC 60.969 66.667 0.00 0.00 0.00 5.03
517 518 1.884464 CACATGGATCACGGGCGAG 60.884 63.158 0.00 0.00 0.00 5.03
518 519 1.893919 TTCACATGGATCACGGGCGA 61.894 55.000 0.00 0.00 0.00 5.54
519 520 1.449423 TTCACATGGATCACGGGCG 60.449 57.895 0.00 0.00 0.00 6.13
520 521 1.705337 CGTTCACATGGATCACGGGC 61.705 60.000 0.00 0.00 0.00 6.13
521 522 0.391130 ACGTTCACATGGATCACGGG 60.391 55.000 11.91 0.00 35.14 5.28
522 523 0.721154 CACGTTCACATGGATCACGG 59.279 55.000 11.91 0.84 35.14 4.94
523 524 1.708822 TCACGTTCACATGGATCACG 58.291 50.000 0.00 2.53 36.91 4.35
524 525 2.159841 CGTTCACGTTCACATGGATCAC 60.160 50.000 0.00 0.00 34.11 3.06
525 526 2.065512 CGTTCACGTTCACATGGATCA 58.934 47.619 0.00 0.00 34.11 2.92
526 527 2.333926 TCGTTCACGTTCACATGGATC 58.666 47.619 0.00 0.00 40.80 3.36
527 528 2.448926 TCGTTCACGTTCACATGGAT 57.551 45.000 0.00 0.00 40.80 3.41
528 529 2.226602 TTCGTTCACGTTCACATGGA 57.773 45.000 0.00 0.00 40.80 3.41
529 530 2.601266 GGTTTCGTTCACGTTCACATGG 60.601 50.000 0.00 0.00 40.80 3.66
541 544 1.499049 AACTCGAGCAGGTTTCGTTC 58.501 50.000 13.61 0.00 39.05 3.95
607 622 2.418628 CACAAACGTCAACAACCACTCT 59.581 45.455 0.00 0.00 0.00 3.24
629 644 2.798283 TCGTTCATTGAGTGGAAACGTC 59.202 45.455 5.94 0.00 0.00 4.34
630 645 2.800544 CTCGTTCATTGAGTGGAAACGT 59.199 45.455 5.94 0.00 0.00 3.99
631 646 2.800544 ACTCGTTCATTGAGTGGAAACG 59.199 45.455 0.00 0.00 44.69 3.60
632 647 3.186613 GGACTCGTTCATTGAGTGGAAAC 59.813 47.826 0.00 0.00 46.29 2.78
720 756 3.518998 CGGTCTGATCGGCCTCGT 61.519 66.667 1.55 0.00 37.69 4.18
761 803 1.154150 GGATCAACTTGCGCTGTGC 60.154 57.895 9.73 6.19 46.70 4.57
772 814 1.702299 CGACGTTCGCTGGATCAAC 59.298 57.895 0.00 0.00 31.14 3.18
800 842 2.743928 CACCGGACAGCTCAAGCC 60.744 66.667 9.46 0.00 43.38 4.35
823 865 4.752879 ACGTTGCGATGGACCCCG 62.753 66.667 0.00 0.00 0.00 5.73
824 866 3.124921 CACGTTGCGATGGACCCC 61.125 66.667 0.00 0.00 0.00 4.95
876 943 0.878961 ACAAGGACGACGAAGGCAAC 60.879 55.000 0.00 0.00 0.00 4.17
908 982 2.422377 GGCTGGGTTACGGGTGATTTAT 60.422 50.000 0.00 0.00 0.00 1.40
909 983 1.065272 GGCTGGGTTACGGGTGATTTA 60.065 52.381 0.00 0.00 0.00 1.40
910 984 0.323087 GGCTGGGTTACGGGTGATTT 60.323 55.000 0.00 0.00 0.00 2.17
953 1036 2.097791 GGAGATAGATCGATGGCCGTAC 59.902 54.545 0.54 0.00 39.75 3.67
954 1037 2.026169 AGGAGATAGATCGATGGCCGTA 60.026 50.000 0.54 0.00 39.75 4.02
964 1047 7.657761 GCACTAGCTAGATAGAGGAGATAGATC 59.342 44.444 27.45 0.00 33.78 2.75
970 1063 3.579151 TCGCACTAGCTAGATAGAGGAGA 59.421 47.826 27.45 15.56 39.10 3.71
971 1064 3.932822 TCGCACTAGCTAGATAGAGGAG 58.067 50.000 27.45 13.72 39.10 3.69
974 1067 6.307031 TCTTTTCGCACTAGCTAGATAGAG 57.693 41.667 27.45 14.53 39.10 2.43
976 1069 6.730175 TCTTCTTTTCGCACTAGCTAGATAG 58.270 40.000 27.45 13.47 39.10 2.08
978 1071 5.584253 TCTTCTTTTCGCACTAGCTAGAT 57.416 39.130 27.45 8.78 39.10 1.98
979 1072 5.344066 CATCTTCTTTTCGCACTAGCTAGA 58.656 41.667 27.45 1.63 39.10 2.43
1008 1104 0.522705 CGAACGCTGCGAGCTTACTA 60.523 55.000 30.47 0.00 39.60 1.82
1009 1105 1.801913 CGAACGCTGCGAGCTTACT 60.802 57.895 30.47 0.16 39.60 2.24
1010 1106 1.999651 GACGAACGCTGCGAGCTTAC 62.000 60.000 30.47 11.07 39.60 2.34
1103 1199 4.452733 GAGGACAGAACCGCGGGG 62.453 72.222 31.76 18.33 40.11 5.73
1170 1969 2.517875 TAGCCGTAGCCGAGTCCC 60.518 66.667 0.00 0.00 41.25 4.46
1207 2006 3.064987 CTCTGGGGCAGTACGACGG 62.065 68.421 0.00 0.00 32.61 4.79
1333 2132 0.376152 GAATCGACGAGCCGTGTCTA 59.624 55.000 3.01 0.00 41.37 2.59
1334 2133 1.136984 GAATCGACGAGCCGTGTCT 59.863 57.895 3.01 0.00 41.37 3.41
1340 2148 3.967203 AGTTAGTAGAATCGACGAGCC 57.033 47.619 3.01 0.00 0.00 4.70
1382 2193 6.829229 AACTTAGTATAAAGTTGGGCCAAC 57.171 37.500 36.51 36.51 45.60 3.77
1417 2233 6.531021 TCCTCCGTTCCAAAATAGATAATCC 58.469 40.000 0.00 0.00 0.00 3.01
1418 2234 7.715686 ACTTCCTCCGTTCCAAAATAGATAATC 59.284 37.037 0.00 0.00 0.00 1.75
1419 2235 7.574607 ACTTCCTCCGTTCCAAAATAGATAAT 58.425 34.615 0.00 0.00 0.00 1.28
1420 2236 6.954232 ACTTCCTCCGTTCCAAAATAGATAA 58.046 36.000 0.00 0.00 0.00 1.75
1421 2237 6.555463 ACTTCCTCCGTTCCAAAATAGATA 57.445 37.500 0.00 0.00 0.00 1.98
1423 2239 4.903045 ACTTCCTCCGTTCCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
1424 2240 9.420551 GTATATACTTCCTCCGTTCCAAAATAG 57.579 37.037 5.58 0.00 0.00 1.73
1441 2259 9.595823 AAACGACAATGCAGTTAGTATATACTT 57.404 29.630 20.21 0.12 37.73 2.24
1491 2342 5.039920 CCTGACATCACATGAAGGGATTA 57.960 43.478 0.00 0.00 38.68 1.75
1493 2344 3.572632 CCTGACATCACATGAAGGGAT 57.427 47.619 0.00 0.00 42.52 3.85
1495 2346 2.048444 CCCTGACATCACATGAAGGG 57.952 55.000 0.00 11.96 44.89 3.95
1496 2347 1.283029 ACCCCTGACATCACATGAAGG 59.717 52.381 0.00 0.00 37.38 3.46
1497 2348 2.362736 CACCCCTGACATCACATGAAG 58.637 52.381 0.00 0.00 0.00 3.02
1498 2349 1.614051 GCACCCCTGACATCACATGAA 60.614 52.381 0.00 0.00 0.00 2.57
1499 2350 0.035152 GCACCCCTGACATCACATGA 60.035 55.000 0.00 0.00 0.00 3.07
1500 2351 1.371337 CGCACCCCTGACATCACATG 61.371 60.000 0.00 0.00 0.00 3.21
1501 2352 1.078214 CGCACCCCTGACATCACAT 60.078 57.895 0.00 0.00 0.00 3.21
1502 2353 1.552799 ATCGCACCCCTGACATCACA 61.553 55.000 0.00 0.00 0.00 3.58
1503 2354 1.091771 CATCGCACCCCTGACATCAC 61.092 60.000 0.00 0.00 0.00 3.06
1504 2355 1.221566 CATCGCACCCCTGACATCA 59.778 57.895 0.00 0.00 0.00 3.07
1505 2356 2.182842 GCATCGCACCCCTGACATC 61.183 63.158 0.00 0.00 0.00 3.06
1506 2357 2.124570 GCATCGCACCCCTGACAT 60.125 61.111 0.00 0.00 0.00 3.06
1507 2358 2.803155 GAAGCATCGCACCCCTGACA 62.803 60.000 0.00 0.00 0.00 3.58
1508 2359 2.045926 AAGCATCGCACCCCTGAC 60.046 61.111 0.00 0.00 0.00 3.51
1541 2392 2.093394 TCGTTGTTCTTGGAGTTGGTCA 60.093 45.455 0.00 0.00 0.00 4.02
1559 2410 0.178958 ACCTTCCCTCTCTGTGTCGT 60.179 55.000 0.00 0.00 0.00 4.34
1578 2429 1.494721 AGGCTGTTCTTGTTTGGAGGA 59.505 47.619 0.00 0.00 0.00 3.71
1584 2435 0.947244 CTCGCAGGCTGTTCTTGTTT 59.053 50.000 17.16 0.00 0.00 2.83
1770 2621 1.568025 GTCGGTCTCGTTGGCAAAC 59.432 57.895 0.00 0.00 37.69 2.93
1809 2660 1.592400 CCTGGAGCTCCGTGACGTTA 61.592 60.000 27.43 6.63 39.43 3.18
1990 2841 2.946762 GTCTTGGTTCACGCTGGC 59.053 61.111 0.00 0.00 0.00 4.85
1994 2845 0.163788 CACATCGTCTTGGTTCACGC 59.836 55.000 0.00 0.00 35.93 5.34
2111 2962 0.884704 TGCGTTTTCTCTCACCTGCC 60.885 55.000 0.00 0.00 0.00 4.85
2214 3072 1.694133 CCCTCCTGATCTCTGTGCCC 61.694 65.000 0.00 0.00 0.00 5.36
2231 3089 1.476891 TGTTGACTCTCGAGCATACCC 59.523 52.381 7.81 0.00 0.00 3.69
2309 3182 3.829601 AGTTACATCTCCTCCATCGATCC 59.170 47.826 0.00 0.00 0.00 3.36
2310 3183 5.461032 AAGTTACATCTCCTCCATCGATC 57.539 43.478 0.00 0.00 0.00 3.69
2311 3184 4.022762 CGAAGTTACATCTCCTCCATCGAT 60.023 45.833 0.00 0.00 0.00 3.59
2312 3185 3.315470 CGAAGTTACATCTCCTCCATCGA 59.685 47.826 0.00 0.00 0.00 3.59
2313 3186 3.066900 ACGAAGTTACATCTCCTCCATCG 59.933 47.826 0.00 0.00 37.78 3.84
2353 3226 9.403583 ACAGAGTTTTAGTATGAGAAAACCAAA 57.596 29.630 6.61 0.00 43.48 3.28
2818 4059 7.881142 TCAATCATTTGTTAAGACCAAACGAT 58.119 30.769 0.00 0.00 36.58 3.73
2820 4061 7.096230 GGTTCAATCATTTGTTAAGACCAAACG 60.096 37.037 0.00 0.00 34.85 3.60
2862 4104 8.920665 CGATTTTTGTGGCATTGTAGAAAATAA 58.079 29.630 0.00 0.00 0.00 1.40
2863 4105 8.300286 TCGATTTTTGTGGCATTGTAGAAAATA 58.700 29.630 0.00 0.00 0.00 1.40
2864 4106 7.151308 TCGATTTTTGTGGCATTGTAGAAAAT 58.849 30.769 0.00 0.00 0.00 1.82
2887 4129 3.435327 TCCTTTGACGAACAAATGGATCG 59.565 43.478 16.95 8.65 45.63 3.69
2891 4133 5.810074 AGTTTTTCCTTTGACGAACAAATGG 59.190 36.000 11.31 13.24 45.63 3.16
2894 4136 6.262193 AGAGTTTTTCCTTTGACGAACAAA 57.738 33.333 10.68 10.68 44.79 2.83
2897 4139 4.334481 TGGAGAGTTTTTCCTTTGACGAAC 59.666 41.667 0.00 0.00 35.67 3.95
2924 4166 9.739276 TGAATAAAGCCTATTTCTCTCAGAAAA 57.261 29.630 2.90 0.00 46.08 2.29
2925 4167 9.911788 ATGAATAAAGCCTATTTCTCTCAGAAA 57.088 29.630 1.27 1.27 46.89 2.52
2926 4168 9.911788 AATGAATAAAGCCTATTTCTCTCAGAA 57.088 29.630 0.00 0.00 31.28 3.02
2930 4172 7.175816 GGGGAATGAATAAAGCCTATTTCTCTC 59.824 40.741 0.00 0.00 0.00 3.20
2938 4180 5.147032 CCATTGGGGAATGAATAAAGCCTA 58.853 41.667 0.00 0.00 40.01 3.93
2942 4184 6.710278 ACAAACCATTGGGGAATGAATAAAG 58.290 36.000 7.78 0.00 41.01 1.85
2943 4185 6.694445 ACAAACCATTGGGGAATGAATAAA 57.306 33.333 7.78 0.00 41.01 1.40
2967 4213 6.436738 TGTACCTGAAATTACTTGTACCCA 57.563 37.500 0.00 0.00 0.00 4.51
2980 6831 6.056090 TGTGGCTACATTATGTACCTGAAA 57.944 37.500 17.92 3.35 30.55 2.69
2995 6846 2.094762 AGGTCGTCATTTGTGGCTAC 57.905 50.000 0.00 0.00 0.00 3.58
2999 6850 1.732259 GCTGTAGGTCGTCATTTGTGG 59.268 52.381 0.00 0.00 0.00 4.17
3011 6862 1.229082 TTCGACCCTGGCTGTAGGT 60.229 57.895 0.00 0.00 36.02 3.08
3015 6866 1.674057 CTTCTTCGACCCTGGCTGT 59.326 57.895 0.00 0.00 0.00 4.40
3055 6906 1.453155 AAACAGGCGGCATAGTTCTG 58.547 50.000 13.08 0.40 0.00 3.02
3060 6911 1.534595 GCATGAAAACAGGCGGCATAG 60.535 52.381 13.08 2.78 0.00 2.23
3082 6933 4.437390 CCACTTTTTCAGGGATCGATTTCG 60.437 45.833 0.00 0.00 41.45 3.46
3095 6947 3.291383 CGCGGGGCCACTTTTTCA 61.291 61.111 1.96 0.00 0.00 2.69
3109 6961 0.523968 TCCCGAGATTAAACGTCGCG 60.524 55.000 0.00 0.00 38.38 5.87
3114 6966 2.287915 CCATGCTTCCCGAGATTAAACG 59.712 50.000 0.00 0.00 0.00 3.60
3117 6969 1.490490 AGCCATGCTTCCCGAGATTAA 59.510 47.619 0.00 0.00 33.89 1.40
3131 6983 1.820906 ATGCAGGTACGCAGCCATG 60.821 57.895 0.00 0.00 46.99 3.66
3140 6992 0.807667 CTGACGCTCCATGCAGGTAC 60.808 60.000 0.00 0.00 43.06 3.34
3156 7008 7.535997 GGCGACATACTGTATATCAATACTGA 58.464 38.462 6.87 0.00 38.93 3.41
3165 7017 2.163815 GAGGCGGCGACATACTGTATAT 59.836 50.000 18.30 0.00 0.00 0.86
3166 7018 1.538512 GAGGCGGCGACATACTGTATA 59.461 52.381 18.30 0.00 0.00 1.47
3170 7022 1.878522 GTGAGGCGGCGACATACTG 60.879 63.158 18.30 0.00 0.00 2.74
3176 7028 3.414700 CTGTTGTGAGGCGGCGAC 61.415 66.667 12.98 8.50 0.00 5.19
3179 7031 0.320421 TCTAACTGTTGTGAGGCGGC 60.320 55.000 0.00 0.00 0.00 6.53
3182 7034 2.226674 GGCTTTCTAACTGTTGTGAGGC 59.773 50.000 2.69 9.17 0.00 4.70
3185 7037 1.871039 GCGGCTTTCTAACTGTTGTGA 59.129 47.619 2.69 0.00 0.00 3.58
3188 7040 0.865769 ACGCGGCTTTCTAACTGTTG 59.134 50.000 12.47 0.00 0.00 3.33
3195 7047 0.036765 ACAATCCACGCGGCTTTCTA 60.037 50.000 12.47 0.00 0.00 2.10
3203 7055 4.147322 GTGCCGACAATCCACGCG 62.147 66.667 3.53 3.53 0.00 6.01
3204 7056 1.922135 AATGTGCCGACAATCCACGC 61.922 55.000 0.00 0.00 35.11 5.34
3206 7058 1.164411 TGAATGTGCCGACAATCCAC 58.836 50.000 0.00 0.00 35.11 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.