Multiple sequence alignment - TraesCS4A01G235400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G235400 chr4A 100.000 7792 0 0 1 7792 544061199 544068990 0.000000e+00 14390.0
1 TraesCS4A01G235400 chr4A 88.324 531 42 5 7281 7791 186693133 186693663 3.090000e-173 619.0
2 TraesCS4A01G235400 chr4A 88.447 528 34 10 7287 7792 148367079 148366557 5.170000e-171 612.0
3 TraesCS4A01G235400 chr4A 87.170 530 40 10 7285 7792 455649243 455649766 1.890000e-160 577.0
4 TraesCS4A01G235400 chr4A 86.338 527 36 17 7284 7792 12537991 12537483 6.880000e-150 542.0
5 TraesCS4A01G235400 chr4A 89.975 399 29 7 6443 6837 544172389 544172780 9.020000e-139 505.0
6 TraesCS4A01G235400 chr4A 98.917 277 3 0 6169 6445 544062296 544062572 5.430000e-136 496.0
7 TraesCS4A01G235400 chr4A 98.917 277 3 0 1098 1374 544067367 544067643 5.430000e-136 496.0
8 TraesCS4A01G235400 chr4A 90.604 149 5 1 958 1097 544172248 544172396 1.030000e-43 189.0
9 TraesCS4A01G235400 chr4A 79.891 184 31 4 6880 7058 650020600 650020418 6.350000e-26 130.0
10 TraesCS4A01G235400 chr1B 97.371 5364 86 12 1098 6447 551829988 551835310 0.000000e+00 9073.0
11 TraesCS4A01G235400 chr1B 98.917 277 3 0 6169 6445 551829988 551830264 5.430000e-136 496.0
12 TraesCS4A01G235400 chr1B 98.556 277 4 0 1098 1374 551835032 551835308 2.530000e-134 490.0
13 TraesCS4A01G235400 chr1B 95.968 124 4 1 1264 1386 645140389 645140266 4.770000e-47 200.0
14 TraesCS4A01G235400 chr1B 96.491 114 4 0 1261 1374 347575010 347574897 1.030000e-43 189.0
15 TraesCS4A01G235400 chr1B 95.690 116 5 0 6332 6447 347575010 347574895 3.710000e-43 187.0
16 TraesCS4A01G235400 chr1B 96.396 111 4 0 1264 1374 645137766 645137656 4.800000e-42 183.0
17 TraesCS4A01G235400 chr1B 95.495 111 5 0 6335 6445 645137766 645137656 2.230000e-40 178.0
18 TraesCS4A01G235400 chr1B 95.495 111 5 0 6335 6445 645140389 645140279 2.230000e-40 178.0
19 TraesCS4A01G235400 chr7A 98.261 4600 65 6 1858 6448 162577193 162572600 0.000000e+00 8037.0
20 TraesCS4A01G235400 chr7A 97.914 767 15 1 1094 1860 162577896 162577131 0.000000e+00 1327.0
21 TraesCS4A01G235400 chr7A 91.667 516 36 4 7283 7792 37696462 37696976 0.000000e+00 708.0
22 TraesCS4A01G235400 chr7A 89.163 526 37 8 7287 7792 139674144 139673619 8.530000e-179 638.0
23 TraesCS4A01G235400 chr7A 88.213 526 38 12 7285 7792 8514226 8513707 2.400000e-169 606.0
24 TraesCS4A01G235400 chr7A 88.068 528 38 9 7287 7791 102366631 102367156 3.110000e-168 603.0
25 TraesCS4A01G235400 chr7A 87.617 533 41 11 7284 7792 650970264 650970795 5.200000e-166 595.0
26 TraesCS4A01G235400 chr7A 98.195 277 5 0 1098 1374 162572879 162572603 1.180000e-132 484.0
27 TraesCS4A01G235400 chr7A 97.834 277 6 0 6169 6445 162577893 162577617 5.470000e-131 479.0
28 TraesCS4A01G235400 chr7A 85.502 269 22 7 7284 7540 581088451 581088714 1.670000e-66 265.0
29 TraesCS4A01G235400 chr7D 94.277 1887 96 6 4275 6151 614648458 614650342 0.000000e+00 2876.0
30 TraesCS4A01G235400 chr7D 91.739 230 17 1 1105 1334 614650337 614650564 1.260000e-82 318.0
31 TraesCS4A01G235400 chr7D 91.304 230 18 1 6176 6405 614650337 614650564 5.870000e-81 313.0
32 TraesCS4A01G235400 chr7D 80.383 209 30 9 6856 7059 448509831 448510033 1.750000e-31 148.0
33 TraesCS4A01G235400 chr4D 76.632 3676 800 49 2565 6214 282071708 282068066 0.000000e+00 1975.0
34 TraesCS4A01G235400 chr4D 76.136 3675 822 47 2565 6214 445382155 445385799 0.000000e+00 1877.0
35 TraesCS4A01G235400 chr4D 88.214 543 41 13 6531 7064 52748851 52748323 1.850000e-175 627.0
36 TraesCS4A01G235400 chr4D 91.192 386 14 9 584 957 52749749 52749372 2.510000e-139 507.0
37 TraesCS4A01G235400 chr4D 80.401 648 76 29 1263 1881 445380885 445381510 5.550000e-121 446.0
38 TraesCS4A01G235400 chr4D 85.507 414 44 7 6443 6843 52497268 52496858 1.210000e-112 418.0
39 TraesCS4A01G235400 chr4D 79.692 650 77 28 1263 1881 282072978 282072353 1.210000e-112 418.0
40 TraesCS4A01G235400 chr4D 82.749 371 25 20 1 371 52751202 52750871 2.130000e-75 294.0
41 TraesCS4A01G235400 chr4D 87.204 211 17 3 896 1097 52497470 52497261 1.690000e-56 231.0
42 TraesCS4A01G235400 chr4D 80.749 187 32 4 6850 7036 93436761 93436943 8.150000e-30 143.0
43 TraesCS4A01G235400 chr4D 100.000 69 0 0 6446 6514 52749271 52749203 2.280000e-25 128.0
44 TraesCS4A01G235400 chr4D 87.850 107 4 1 1000 1097 52749373 52749267 4.940000e-22 117.0
45 TraesCS4A01G235400 chr4D 89.286 84 9 0 443 526 52750845 52750762 1.070000e-18 106.0
46 TraesCS4A01G235400 chr3D 76.021 3674 828 47 2565 6214 411655321 411658965 0.000000e+00 1855.0
47 TraesCS4A01G235400 chr3D 79.345 1099 167 35 1265 2334 411639850 411640917 0.000000e+00 717.0
48 TraesCS4A01G235400 chr3D 88.945 199 20 1 7091 7287 587872839 587873037 2.170000e-60 244.0
49 TraesCS4A01G235400 chr6B 75.964 2775 628 35 2565 5323 687406437 687409188 0.000000e+00 1393.0
50 TraesCS4A01G235400 chr6B 97.321 112 3 0 1263 1374 687401568 687401679 2.870000e-44 191.0
51 TraesCS4A01G235400 chr6B 95.690 116 4 1 6334 6449 687401568 687401682 1.340000e-42 185.0
52 TraesCS4A01G235400 chr3B 76.194 2638 585 37 2565 5184 29395662 29398274 0.000000e+00 1352.0
53 TraesCS4A01G235400 chr3B 82.051 234 27 11 1263 1488 29393757 29393983 1.340000e-42 185.0
54 TraesCS4A01G235400 chr3B 97.222 36 1 0 5999 6034 75332923 75332888 2.350000e-05 62.1
55 TraesCS4A01G235400 chr7B 95.658 806 33 2 5084 5888 683171760 683172564 0.000000e+00 1293.0
56 TraesCS4A01G235400 chr7B 90.287 453 26 12 6005 6445 683172600 683173046 1.890000e-160 577.0
57 TraesCS4A01G235400 chr7B 86.564 454 60 1 1339 1791 239775033 239775486 4.200000e-137 499.0
58 TraesCS4A01G235400 chr7B 89.046 283 19 10 1098 1374 683172770 683173046 2.690000e-89 340.0
59 TraesCS4A01G235400 chr7B 78.899 218 35 9 6846 7059 465769682 465769892 3.790000e-28 137.0
60 TraesCS4A01G235400 chr7B 81.977 172 19 9 7284 7449 648710215 648710380 1.360000e-27 135.0
61 TraesCS4A01G235400 chr5A 88.722 532 33 14 7285 7792 461591495 461590967 6.640000e-175 625.0
62 TraesCS4A01G235400 chr5A 85.588 451 64 1 1341 1790 454806646 454806196 9.150000e-129 472.0
63 TraesCS4A01G235400 chr5A 83.010 206 26 7 6856 7057 476664745 476664945 2.230000e-40 178.0
64 TraesCS4A01G235400 chr6A 88.636 528 30 11 7284 7792 123500939 123501455 4.000000e-172 616.0
65 TraesCS4A01G235400 chr6A 87.593 540 40 8 7274 7792 553097944 553098477 1.120000e-167 601.0
66 TraesCS4A01G235400 chr3A 87.726 497 32 13 7314 7792 141975832 141976317 3.180000e-153 553.0
67 TraesCS4A01G235400 chr4B 91.638 287 14 5 22 307 77510327 77510050 9.480000e-104 388.0
68 TraesCS4A01G235400 chr4B 86.104 367 36 11 6709 7063 77509026 77508663 1.590000e-101 381.0
69 TraesCS4A01G235400 chr4B 84.712 399 28 7 6449 6843 77007573 77007204 1.240000e-97 368.0
70 TraesCS4A01G235400 chr4B 80.114 528 48 21 323 828 77509970 77509478 2.690000e-89 340.0
71 TraesCS4A01G235400 chr4B 93.450 229 12 2 6449 6677 77509248 77509023 3.480000e-88 337.0
72 TraesCS4A01G235400 chr4B 88.889 216 14 2 896 1101 77509458 77509243 2.790000e-64 257.0
73 TraesCS4A01G235400 chr4B 85.308 211 11 7 896 1097 77007771 77007572 4.770000e-47 200.0
74 TraesCS4A01G235400 chr4B 81.111 180 30 4 6857 7036 131703660 131703835 2.930000e-29 141.0
75 TraesCS4A01G235400 chr5B 91.880 234 16 2 7057 7287 478546600 478546367 2.710000e-84 324.0
76 TraesCS4A01G235400 chr5B 77.885 208 40 5 6858 7062 706023619 706023415 2.950000e-24 124.0
77 TraesCS4A01G235400 chr5B 100.000 36 0 0 1339 1374 711053667 711053702 5.050000e-07 67.6
78 TraesCS4A01G235400 chr5B 100.000 36 0 0 6410 6445 711053667 711053702 5.050000e-07 67.6
79 TraesCS4A01G235400 chr2B 89.121 239 20 4 7053 7287 16046894 16047130 7.650000e-75 292.0
80 TraesCS4A01G235400 chr6D 85.532 235 30 3 7057 7287 55293883 55293649 7.810000e-60 243.0
81 TraesCS4A01G235400 chr5D 95.495 111 5 0 1264 1374 501035440 501035550 2.230000e-40 178.0
82 TraesCS4A01G235400 chr5D 94.595 111 6 0 6335 6445 501035440 501035550 1.040000e-38 172.0
83 TraesCS4A01G235400 chr5D 83.237 173 27 2 6864 7036 346007491 346007321 2.910000e-34 158.0
84 TraesCS4A01G235400 chr1D 79.916 239 40 6 7055 7287 373421899 373421663 1.340000e-37 169.0
85 TraesCS4A01G235400 chr1D 79.747 237 42 5 7056 7287 419471262 419471497 4.840000e-37 167.0
86 TraesCS4A01G235400 chr1D 90.678 118 7 4 7276 7391 202558825 202558940 3.770000e-33 154.0
87 TraesCS4A01G235400 chr1D 88.800 125 11 3 1264 1386 278890974 278891097 4.870000e-32 150.0
88 TraesCS4A01G235400 chr1D 83.529 170 15 9 7287 7450 391338624 391338462 6.300000e-31 147.0
89 TraesCS4A01G235400 chr1D 87.500 112 12 2 6335 6445 278890974 278891084 2.280000e-25 128.0
90 TraesCS4A01G235400 chr2D 80.952 210 32 8 6848 7055 626422741 626422538 8.090000e-35 159.0
91 TraesCS4A01G235400 chr2D 76.786 112 20 5 7059 7165 574480737 574480847 3.040000e-04 58.4
92 TraesCS4A01G235400 chrUn 79.661 118 20 3 7059 7172 399271174 399271291 1.800000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G235400 chr4A 544061199 544068990 7791 False 14390.000000 14390 100.000000 1 7792 1 chr4A.!!$F3 7791
1 TraesCS4A01G235400 chr4A 186693133 186693663 530 False 619.000000 619 88.324000 7281 7791 1 chr4A.!!$F1 510
2 TraesCS4A01G235400 chr4A 148366557 148367079 522 True 612.000000 612 88.447000 7287 7792 1 chr4A.!!$R2 505
3 TraesCS4A01G235400 chr4A 455649243 455649766 523 False 577.000000 577 87.170000 7285 7792 1 chr4A.!!$F2 507
4 TraesCS4A01G235400 chr4A 12537483 12537991 508 True 542.000000 542 86.338000 7284 7792 1 chr4A.!!$R1 508
5 TraesCS4A01G235400 chr4A 544172248 544172780 532 False 347.000000 505 90.289500 958 6837 2 chr4A.!!$F6 5879
6 TraesCS4A01G235400 chr1B 551829988 551835310 5322 False 9073.000000 9073 97.371000 1098 6447 1 chr1B.!!$F1 5349
7 TraesCS4A01G235400 chr7A 162572600 162577193 4593 True 8037.000000 8037 98.261000 1858 6448 1 chr7A.!!$R3 4590
8 TraesCS4A01G235400 chr7A 162577131 162577896 765 True 903.000000 1327 97.874000 1094 6445 2 chr7A.!!$R5 5351
9 TraesCS4A01G235400 chr7A 37696462 37696976 514 False 708.000000 708 91.667000 7283 7792 1 chr7A.!!$F1 509
10 TraesCS4A01G235400 chr7A 139673619 139674144 525 True 638.000000 638 89.163000 7287 7792 1 chr7A.!!$R2 505
11 TraesCS4A01G235400 chr7A 8513707 8514226 519 True 606.000000 606 88.213000 7285 7792 1 chr7A.!!$R1 507
12 TraesCS4A01G235400 chr7A 102366631 102367156 525 False 603.000000 603 88.068000 7287 7791 1 chr7A.!!$F2 504
13 TraesCS4A01G235400 chr7A 650970264 650970795 531 False 595.000000 595 87.617000 7284 7792 1 chr7A.!!$F4 508
14 TraesCS4A01G235400 chr7D 614648458 614650564 2106 False 1169.000000 2876 92.440000 1105 6405 3 chr7D.!!$F2 5300
15 TraesCS4A01G235400 chr4D 282068066 282072978 4912 True 1196.500000 1975 78.162000 1263 6214 2 chr4D.!!$R3 4951
16 TraesCS4A01G235400 chr4D 445380885 445385799 4914 False 1161.500000 1877 78.268500 1263 6214 2 chr4D.!!$F2 4951
17 TraesCS4A01G235400 chr4D 52496858 52497470 612 True 324.500000 418 86.355500 896 6843 2 chr4D.!!$R1 5947
18 TraesCS4A01G235400 chr4D 52748323 52751202 2879 True 296.500000 627 89.881833 1 7064 6 chr4D.!!$R2 7063
19 TraesCS4A01G235400 chr3D 411655321 411658965 3644 False 1855.000000 1855 76.021000 2565 6214 1 chr3D.!!$F2 3649
20 TraesCS4A01G235400 chr3D 411639850 411640917 1067 False 717.000000 717 79.345000 1265 2334 1 chr3D.!!$F1 1069
21 TraesCS4A01G235400 chr6B 687406437 687409188 2751 False 1393.000000 1393 75.964000 2565 5323 1 chr6B.!!$F1 2758
22 TraesCS4A01G235400 chr3B 29393757 29398274 4517 False 768.500000 1352 79.122500 1263 5184 2 chr3B.!!$F1 3921
23 TraesCS4A01G235400 chr7B 683171760 683173046 1286 False 736.666667 1293 91.663667 1098 6445 3 chr7B.!!$F4 5347
24 TraesCS4A01G235400 chr5A 461590967 461591495 528 True 625.000000 625 88.722000 7285 7792 1 chr5A.!!$R2 507
25 TraesCS4A01G235400 chr6A 123500939 123501455 516 False 616.000000 616 88.636000 7284 7792 1 chr6A.!!$F1 508
26 TraesCS4A01G235400 chr6A 553097944 553098477 533 False 601.000000 601 87.593000 7274 7792 1 chr6A.!!$F2 518
27 TraesCS4A01G235400 chr4B 77508663 77510327 1664 True 340.600000 388 88.039000 22 7063 5 chr4B.!!$R2 7041
28 TraesCS4A01G235400 chr4B 77007204 77007771 567 True 284.000000 368 85.010000 896 6843 2 chr4B.!!$R1 5947

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
517 586 0.107945 GGTGAAGTAGGGCTGAGCAG 60.108 60.000 6.82 0.00 0.00 4.24 F
520 589 0.107945 GAAGTAGGGCTGAGCAGGTG 60.108 60.000 6.82 0.00 0.00 4.00 F
1433 2491 0.179084 CCGCGTACATCACCAATCCT 60.179 55.000 4.92 0.00 0.00 3.24 F
1985 3690 1.285641 CGCCCAAACACGCATTTCT 59.714 52.632 0.00 0.00 0.00 2.52 F
2978 4695 1.206610 GAGACTTGCTGATGGCTCTCA 59.793 52.381 0.00 0.00 38.69 3.27 F
3452 5170 4.910304 ACCTGTGAATTCTAGGCCATATCT 59.090 41.667 21.79 5.39 34.93 1.98 F
4209 5929 2.231721 GCCTCTCACGAACCTTCTAACT 59.768 50.000 0.00 0.00 0.00 2.24 F
5437 7168 1.144969 GCAGTACTTGCGTTGTGCTA 58.855 50.000 0.00 0.00 44.09 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1413 2471 0.461339 GGATTGGTGATGTACGCGGT 60.461 55.000 12.47 0.00 0.00 5.68 R
1930 3614 1.065701 CTCGTGGCGCTCATAGTAGTT 59.934 52.381 7.64 0.00 0.00 2.24 R
2721 4438 1.668793 CAGAGCATGCACGGTGTCA 60.669 57.895 21.98 8.69 0.00 3.58 R
3817 5535 0.878523 CACTGAAACGTGGCCGAAGA 60.879 55.000 0.00 0.00 37.88 2.87 R
3820 5538 2.970324 GCACTGAAACGTGGCCGA 60.970 61.111 0.00 0.00 37.88 5.54 R
5437 7168 4.141574 CCATTTTCCTGGGCAATCATGAAT 60.142 41.667 0.00 0.00 32.28 2.57 R
5498 7229 1.076485 ATGGAAGCATGGTGGGAGC 60.076 57.895 0.00 0.00 0.00 4.70 R
7231 9372 0.035152 TAGTGATTGGCTGGCACCTG 60.035 55.000 2.29 0.00 33.14 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 3.009033 TCCATGAAGGAAAAGACGGTCAT 59.991 43.478 11.27 0.00 45.65 3.06
69 70 3.375299 CCATGAAGGAAAAGACGGTCATC 59.625 47.826 11.27 5.58 41.22 2.92
70 71 2.683968 TGAAGGAAAAGACGGTCATCG 58.316 47.619 11.27 0.00 45.88 3.84
71 72 2.000447 GAAGGAAAAGACGGTCATCGG 59.000 52.381 11.27 0.00 44.45 4.18
72 73 0.974383 AGGAAAAGACGGTCATCGGT 59.026 50.000 11.27 0.00 44.45 4.69
73 74 1.067071 AGGAAAAGACGGTCATCGGTC 60.067 52.381 11.27 0.43 44.45 4.79
74 75 1.337447 GGAAAAGACGGTCATCGGTCA 60.337 52.381 11.27 0.00 43.36 4.02
152 153 2.005971 AAACGTATGTCGGCTCCTTC 57.994 50.000 0.00 0.00 44.69 3.46
198 199 2.939103 ACTAAACGAGCAGCAATGGATC 59.061 45.455 0.00 0.00 0.00 3.36
210 213 2.880268 GCAATGGATCATCGTTCATGGA 59.120 45.455 0.00 0.00 32.64 3.41
213 216 3.407424 TGGATCATCGTTCATGGATCC 57.593 47.619 15.65 15.65 38.47 3.36
218 221 4.694760 TCATCGTTCATGGATCCTTCAT 57.305 40.909 14.23 0.00 32.64 2.57
221 224 4.486125 TCGTTCATGGATCCTTCATTCA 57.514 40.909 14.23 0.00 0.00 2.57
223 226 4.877823 TCGTTCATGGATCCTTCATTCAAG 59.122 41.667 14.23 0.00 0.00 3.02
224 227 4.637534 CGTTCATGGATCCTTCATTCAAGT 59.362 41.667 14.23 0.00 0.00 3.16
225 228 5.220739 CGTTCATGGATCCTTCATTCAAGTC 60.221 44.000 14.23 0.00 0.00 3.01
228 231 4.760530 TGGATCCTTCATTCAAGTCGAT 57.239 40.909 14.23 0.00 0.00 3.59
230 233 3.738282 GGATCCTTCATTCAAGTCGATCG 59.262 47.826 9.36 9.36 33.61 3.69
240 243 1.716826 AAGTCGATCGCTCGGTCCTC 61.717 60.000 11.09 0.00 45.10 3.71
276 279 2.484264 AGCACATCGTTTTCTTACAGGC 59.516 45.455 0.00 0.00 0.00 4.85
307 310 6.090763 GCACCTTTTCTTTGGAAAAATATCCG 59.909 38.462 5.61 0.00 46.57 4.18
308 311 7.375053 CACCTTTTCTTTGGAAAAATATCCGA 58.625 34.615 5.61 0.00 46.57 4.55
378 447 6.292168 CCTCAACCATAATAAAAGCTACGTCG 60.292 42.308 0.00 0.00 0.00 5.12
385 454 2.061740 AAAAGCTACGTCGAGGTCAC 57.938 50.000 15.00 8.11 0.00 3.67
387 456 2.105006 AAGCTACGTCGAGGTCACTA 57.895 50.000 15.00 0.00 0.00 2.74
388 457 1.654317 AGCTACGTCGAGGTCACTAG 58.346 55.000 15.00 7.68 0.00 2.57
389 458 1.206610 AGCTACGTCGAGGTCACTAGA 59.793 52.381 15.00 0.00 0.00 2.43
390 459 1.327156 GCTACGTCGAGGTCACTAGAC 59.673 57.143 15.00 0.10 43.39 2.59
392 461 1.440708 ACGTCGAGGTCACTAGACTG 58.559 55.000 4.63 3.54 44.28 3.51
394 463 1.805345 CGTCGAGGTCACTAGACTGTT 59.195 52.381 0.00 0.00 44.28 3.16
395 464 2.412977 CGTCGAGGTCACTAGACTGTTG 60.413 54.545 0.00 0.00 44.28 3.33
396 465 2.812591 GTCGAGGTCACTAGACTGTTGA 59.187 50.000 0.00 0.00 43.46 3.18
397 466 3.252701 GTCGAGGTCACTAGACTGTTGAA 59.747 47.826 0.00 0.00 43.46 2.69
398 467 3.252701 TCGAGGTCACTAGACTGTTGAAC 59.747 47.826 0.00 0.00 44.36 3.18
399 468 3.566523 GAGGTCACTAGACTGTTGAACG 58.433 50.000 0.00 0.00 44.36 3.95
400 469 2.296471 AGGTCACTAGACTGTTGAACGG 59.704 50.000 1.93 1.93 44.36 4.44
401 470 2.059541 GTCACTAGACTGTTGAACGGC 58.940 52.381 3.64 0.00 41.64 5.68
404 473 3.131396 CACTAGACTGTTGAACGGCTTT 58.869 45.455 3.64 0.00 0.00 3.51
419 488 1.617740 GCTTTTACAGCCATCAACGC 58.382 50.000 0.00 0.00 43.65 4.84
421 490 0.109964 TTTTACAGCCATCAACGCGC 60.110 50.000 5.73 0.00 0.00 6.86
436 505 3.425713 CGCCGATGTGCACAGCTT 61.426 61.111 30.29 12.51 0.00 3.74
439 508 1.709760 CCGATGTGCACAGCTTACG 59.290 57.895 30.29 23.49 0.00 3.18
472 541 2.411904 GCATTTTCGGGTGCAAATGAA 58.588 42.857 10.07 1.77 39.96 2.57
473 542 2.157474 GCATTTTCGGGTGCAAATGAAC 59.843 45.455 10.07 0.00 39.96 3.18
486 555 1.795768 AATGAACGCACAGATCACGT 58.204 45.000 0.00 0.00 42.81 4.49
517 586 0.107945 GGTGAAGTAGGGCTGAGCAG 60.108 60.000 6.82 0.00 0.00 4.24
520 589 0.107945 GAAGTAGGGCTGAGCAGGTG 60.108 60.000 6.82 0.00 0.00 4.00
521 590 2.124942 GTAGGGCTGAGCAGGTGC 60.125 66.667 6.82 0.00 42.49 5.01
551 642 3.689161 TCAATCTTAAGATGTTGTGCCGG 59.311 43.478 18.61 0.00 34.49 6.13
553 644 0.451783 CTTAAGATGTTGTGCCGGCC 59.548 55.000 26.77 16.24 0.00 6.13
555 646 2.130821 TAAGATGTTGTGCCGGCCCA 62.131 55.000 26.77 17.94 0.00 5.36
556 647 2.988684 GATGTTGTGCCGGCCCAA 60.989 61.111 26.77 23.77 0.00 4.12
570 661 1.648467 GCCCAACATCTCGAAGGTGC 61.648 60.000 0.00 0.00 0.00 5.01
571 662 0.321564 CCCAACATCTCGAAGGTGCA 60.322 55.000 0.00 0.00 0.00 4.57
579 670 2.176045 TCTCGAAGGTGCATGTAGGAA 58.824 47.619 0.00 0.00 0.00 3.36
583 674 3.704566 TCGAAGGTGCATGTAGGAATAGT 59.295 43.478 0.00 0.00 0.00 2.12
595 686 2.550978 AGGAATAGTGTGTGCGTATGC 58.449 47.619 0.00 0.00 43.20 3.14
649 1674 7.598869 GTCATTGTATTGTACAGTGTTCAGAGA 59.401 37.037 0.00 0.00 44.03 3.10
721 1756 3.494626 TGCGCGATTTCCTTGATTATCTC 59.505 43.478 12.10 0.00 0.00 2.75
843 1878 3.192922 GGACACACGGCGCATACC 61.193 66.667 10.83 0.32 0.00 2.73
847 1882 1.878522 CACACGGCGCATACCTCTC 60.879 63.158 10.83 0.00 0.00 3.20
878 1913 2.549282 CACGCCACGTTTCCTTCG 59.451 61.111 0.00 0.00 38.32 3.79
880 1915 1.952635 ACGCCACGTTTCCTTCGAC 60.953 57.895 0.00 0.00 36.35 4.20
882 1917 1.568025 GCCACGTTTCCTTCGACAC 59.432 57.895 0.00 0.00 0.00 3.67
883 1918 1.155424 GCCACGTTTCCTTCGACACA 61.155 55.000 0.00 0.00 0.00 3.72
884 1919 0.580104 CCACGTTTCCTTCGACACAC 59.420 55.000 0.00 0.00 0.00 3.82
885 1920 1.282817 CACGTTTCCTTCGACACACA 58.717 50.000 0.00 0.00 0.00 3.72
886 1921 1.005347 CACGTTTCCTTCGACACACAC 60.005 52.381 0.00 0.00 0.00 3.82
887 1922 1.282817 CGTTTCCTTCGACACACACA 58.717 50.000 0.00 0.00 0.00 3.72
888 1923 1.661617 CGTTTCCTTCGACACACACAA 59.338 47.619 0.00 0.00 0.00 3.33
943 1988 3.838468 GAGTAAACTCGCGCGTGT 58.162 55.556 29.58 29.58 32.78 4.49
973 2019 5.844773 AGAAAAGAGTTAGGGTAAAGCCT 57.155 39.130 5.93 5.93 37.43 4.58
1093 2148 1.864176 GGCGTACCCAAAGAACACG 59.136 57.895 0.00 0.00 35.78 4.49
1094 2149 1.571215 GGCGTACCCAAAGAACACGG 61.571 60.000 0.00 0.00 33.39 4.94
1095 2150 1.864176 CGTACCCAAAGAACACGGC 59.136 57.895 0.00 0.00 0.00 5.68
1096 2151 0.881159 CGTACCCAAAGAACACGGCA 60.881 55.000 0.00 0.00 0.00 5.69
1117 2172 2.004120 TCACACCCCCACCAACTGT 61.004 57.895 0.00 0.00 0.00 3.55
1413 2471 0.753867 TTCTACTCCACACAACGGCA 59.246 50.000 0.00 0.00 0.00 5.69
1433 2491 0.179084 CCGCGTACATCACCAATCCT 60.179 55.000 4.92 0.00 0.00 3.24
1851 3508 4.849329 GCCGGCGACCACTACGAG 62.849 72.222 12.58 0.00 0.00 4.18
1852 3509 4.849329 CCGGCGACCACTACGAGC 62.849 72.222 9.30 0.00 0.00 5.03
1985 3690 1.285641 CGCCCAAACACGCATTTCT 59.714 52.632 0.00 0.00 0.00 2.52
2065 3770 3.755112 TGTACAATGTTCCTGTCCGAA 57.245 42.857 0.00 0.00 0.00 4.30
2084 3789 3.067180 CGAAATTGGATTGGCACTGCTAT 59.933 43.478 0.00 0.00 0.00 2.97
2601 4318 2.352323 GGAACGTCAATTGCGGGATTTT 60.352 45.455 20.77 9.68 0.00 1.82
2721 4438 6.015095 GTGAATTTGGGGAAGTCTTTTCTGAT 60.015 38.462 0.00 0.00 33.63 2.90
2942 4659 2.104792 CACAACTCCCTGTCCAAGAAGA 59.895 50.000 0.00 0.00 0.00 2.87
2978 4695 1.206610 GAGACTTGCTGATGGCTCTCA 59.793 52.381 0.00 0.00 38.69 3.27
3452 5170 4.910304 ACCTGTGAATTCTAGGCCATATCT 59.090 41.667 21.79 5.39 34.93 1.98
3817 5535 6.262049 GGTGATGCCTTTTGGTTTAACAAATT 59.738 34.615 0.00 0.00 39.80 1.82
3820 5538 7.772757 TGATGCCTTTTGGTTTAACAAATTCTT 59.227 29.630 0.00 0.00 39.80 2.52
3848 5566 5.460646 CACGTTTCAGTGCCTAATGAATTT 58.539 37.500 0.00 0.00 40.19 1.82
4200 5920 2.383527 CGCCAAGCCTCTCACGAAC 61.384 63.158 0.00 0.00 0.00 3.95
4209 5929 2.231721 GCCTCTCACGAACCTTCTAACT 59.768 50.000 0.00 0.00 0.00 2.24
4410 6132 7.362401 GCCTATATGAGTAAAGCATTGGGAATG 60.362 40.741 0.00 0.00 41.85 2.67
5437 7168 1.144969 GCAGTACTTGCGTTGTGCTA 58.855 50.000 0.00 0.00 44.09 3.49
5498 7229 5.964958 ATGGCCGAATTCTGGTATAATTG 57.035 39.130 14.86 0.00 0.00 2.32
5620 7351 2.300433 CTGCCCATAATGTTGCTGCTA 58.700 47.619 0.00 0.00 0.00 3.49
5739 7473 3.456644 TCTCTGTTGGTGACCCTGTTTTA 59.543 43.478 0.00 0.00 0.00 1.52
6276 8022 1.160989 TTGTGTTGCGTGTGTTGACT 58.839 45.000 0.00 0.00 0.00 3.41
6557 8647 2.010145 AATAGCAAGTCGTGATGCGT 57.990 45.000 0.00 0.00 46.98 5.24
6584 8674 6.568462 CGATGTGCTACCTGAAACTGAATTTT 60.568 38.462 0.00 0.00 0.00 1.82
6592 8682 3.292460 TGAAACTGAATTTTCCCGGTGT 58.708 40.909 0.00 0.00 35.01 4.16
6593 8683 3.067461 TGAAACTGAATTTTCCCGGTGTG 59.933 43.478 0.00 0.00 35.01 3.82
6594 8684 2.358322 ACTGAATTTTCCCGGTGTGT 57.642 45.000 0.00 0.00 0.00 3.72
6597 8687 5.168647 ACTGAATTTTCCCGGTGTGTATA 57.831 39.130 0.00 0.00 0.00 1.47
6695 8820 1.013596 CCTGCGATAATGCCGAAACA 58.986 50.000 0.00 0.00 0.00 2.83
6740 8865 3.259876 TGGTAGTGATCGCCTTTACTGTT 59.740 43.478 1.76 0.00 0.00 3.16
6759 8884 1.454201 TGCCAACGTGTTTCACTTGA 58.546 45.000 0.00 0.00 30.22 3.02
6838 8967 0.035820 TGGTAGCCCGCTTTTACCTG 60.036 55.000 8.26 0.00 38.12 4.00
6844 8973 1.736126 GCCCGCTTTTACCTGAAGTAC 59.264 52.381 0.00 0.00 0.00 2.73
6847 8982 3.435671 CCCGCTTTTACCTGAAGTACTTG 59.564 47.826 14.14 0.94 0.00 3.16
6848 8983 4.062991 CCGCTTTTACCTGAAGTACTTGT 58.937 43.478 14.14 7.57 0.00 3.16
6853 8988 6.147328 GCTTTTACCTGAAGTACTTGTTCGAT 59.853 38.462 14.14 0.00 0.00 3.59
6854 8989 7.330208 GCTTTTACCTGAAGTACTTGTTCGATA 59.670 37.037 14.14 0.00 0.00 2.92
6863 8998 8.653338 TGAAGTACTTGTTCGATAAATAAGTGC 58.347 33.333 14.14 6.60 45.56 4.40
6868 9003 7.816640 ACTTGTTCGATAAATAAGTGCACATT 58.183 30.769 21.04 12.66 44.69 2.71
6869 9004 8.941977 ACTTGTTCGATAAATAAGTGCACATTA 58.058 29.630 21.04 14.41 44.69 1.90
6870 9005 9.935682 CTTGTTCGATAAATAAGTGCACATTAT 57.064 29.630 21.04 16.37 32.91 1.28
6964 9102 4.461781 TCCTCTTTAACTACCTCAACCTCG 59.538 45.833 0.00 0.00 0.00 4.63
6965 9103 4.381718 CCTCTTTAACTACCTCAACCTCGG 60.382 50.000 0.00 0.00 0.00 4.63
6970 9108 1.203025 ACTACCTCAACCTCGGTGAGT 60.203 52.381 5.99 0.00 34.76 3.41
6976 9114 3.508793 CCTCAACCTCGGTGAGTTAAGTA 59.491 47.826 5.99 0.00 0.00 2.24
7024 9163 7.592938 TGTGTTGAATGTTATTGGTCTTGATC 58.407 34.615 0.00 0.00 0.00 2.92
7025 9164 7.230309 TGTGTTGAATGTTATTGGTCTTGATCA 59.770 33.333 0.00 0.00 0.00 2.92
7027 9166 7.448161 TGTTGAATGTTATTGGTCTTGATCACT 59.552 33.333 0.00 0.00 0.00 3.41
7028 9167 7.381766 TGAATGTTATTGGTCTTGATCACTG 57.618 36.000 0.00 0.00 0.00 3.66
7029 9168 6.942005 TGAATGTTATTGGTCTTGATCACTGT 59.058 34.615 0.00 0.00 0.00 3.55
7031 9170 5.620206 TGTTATTGGTCTTGATCACTGTGT 58.380 37.500 7.79 0.00 0.00 3.72
7032 9171 5.469760 TGTTATTGGTCTTGATCACTGTGTG 59.530 40.000 7.79 0.00 34.45 3.82
7033 9172 3.836365 TTGGTCTTGATCACTGTGTGA 57.164 42.857 7.79 2.77 46.90 3.58
7043 9183 1.688197 TCACTGTGTGATGTGAGAGCA 59.312 47.619 7.79 0.00 37.67 4.26
7083 9224 8.998277 AGAGCAAGTATAATAAGTCCTAGTCA 57.002 34.615 0.00 0.00 0.00 3.41
7084 9225 9.073475 AGAGCAAGTATAATAAGTCCTAGTCAG 57.927 37.037 0.00 0.00 0.00 3.51
7085 9226 7.662897 AGCAAGTATAATAAGTCCTAGTCAGC 58.337 38.462 0.00 0.00 0.00 4.26
7086 9227 7.287927 AGCAAGTATAATAAGTCCTAGTCAGCA 59.712 37.037 0.00 0.00 0.00 4.41
7087 9228 7.596995 GCAAGTATAATAAGTCCTAGTCAGCAG 59.403 40.741 0.00 0.00 0.00 4.24
7088 9229 8.851145 CAAGTATAATAAGTCCTAGTCAGCAGA 58.149 37.037 0.00 0.00 0.00 4.26
7089 9230 8.398878 AGTATAATAAGTCCTAGTCAGCAGAC 57.601 38.462 0.05 0.05 45.31 3.51
7103 9244 5.907207 GTCAGCAGACTATAAGATGTTCCA 58.093 41.667 1.35 0.00 41.64 3.53
7104 9245 5.751028 GTCAGCAGACTATAAGATGTTCCAC 59.249 44.000 1.35 0.00 41.64 4.02
7105 9246 4.742167 CAGCAGACTATAAGATGTTCCACG 59.258 45.833 0.00 0.00 0.00 4.94
7106 9247 4.402793 AGCAGACTATAAGATGTTCCACGT 59.597 41.667 0.00 0.00 0.00 4.49
7107 9248 4.740695 GCAGACTATAAGATGTTCCACGTC 59.259 45.833 0.00 0.00 34.40 4.34
7108 9249 5.678871 GCAGACTATAAGATGTTCCACGTCA 60.679 44.000 0.00 0.00 36.61 4.35
7109 9250 5.974158 CAGACTATAAGATGTTCCACGTCAG 59.026 44.000 0.00 0.00 36.61 3.51
7110 9251 4.683832 ACTATAAGATGTTCCACGTCAGC 58.316 43.478 0.00 0.00 36.61 4.26
7111 9252 3.610040 ATAAGATGTTCCACGTCAGCA 57.390 42.857 0.00 0.00 36.61 4.41
7112 9253 2.254546 AAGATGTTCCACGTCAGCAA 57.745 45.000 0.00 0.00 36.61 3.91
7113 9254 2.479566 AGATGTTCCACGTCAGCAAT 57.520 45.000 0.00 0.00 36.61 3.56
7114 9255 2.350522 AGATGTTCCACGTCAGCAATC 58.649 47.619 0.00 0.00 36.61 2.67
7115 9256 2.027745 AGATGTTCCACGTCAGCAATCT 60.028 45.455 0.00 0.00 36.61 2.40
7116 9257 2.254546 TGTTCCACGTCAGCAATCTT 57.745 45.000 0.00 0.00 0.00 2.40
7117 9258 3.394674 TGTTCCACGTCAGCAATCTTA 57.605 42.857 0.00 0.00 0.00 2.10
7118 9259 3.064207 TGTTCCACGTCAGCAATCTTAC 58.936 45.455 0.00 0.00 0.00 2.34
7119 9260 1.990799 TCCACGTCAGCAATCTTACG 58.009 50.000 0.00 0.00 43.45 3.18
7124 9265 3.624726 CGTCAGCAATCTTACGTGAAG 57.375 47.619 0.00 0.00 35.75 3.02
7143 9284 9.937175 ACGTGAAGAAAAGAGAAAATAAAAGAG 57.063 29.630 0.00 0.00 0.00 2.85
7149 9290 9.868160 AGAAAAGAGAAAATAAAAGAGAAGGGA 57.132 29.630 0.00 0.00 0.00 4.20
7151 9292 7.695480 AAGAGAAAATAAAAGAGAAGGGAGC 57.305 36.000 0.00 0.00 0.00 4.70
7152 9293 6.184068 AGAGAAAATAAAAGAGAAGGGAGCC 58.816 40.000 0.00 0.00 0.00 4.70
7153 9294 4.944317 AGAAAATAAAAGAGAAGGGAGCCG 59.056 41.667 0.00 0.00 0.00 5.52
7154 9295 3.283259 AATAAAAGAGAAGGGAGCCGG 57.717 47.619 0.00 0.00 0.00 6.13
7155 9296 0.252197 TAAAAGAGAAGGGAGCCGGC 59.748 55.000 21.89 21.89 0.00 6.13
7156 9297 2.804828 AAAAGAGAAGGGAGCCGGCG 62.805 60.000 23.20 0.00 0.00 6.46
7166 9307 2.821366 AGCCGGCGCTTCATCAAG 60.821 61.111 23.20 0.00 45.55 3.02
7173 9314 2.819595 GCTTCATCAAGCGCCCGA 60.820 61.111 2.29 0.00 45.67 5.14
7174 9315 3.093278 CTTCATCAAGCGCCCGAC 58.907 61.111 2.29 0.00 0.00 4.79
7175 9316 1.741401 CTTCATCAAGCGCCCGACA 60.741 57.895 2.29 0.00 0.00 4.35
7176 9317 1.298157 CTTCATCAAGCGCCCGACAA 61.298 55.000 2.29 0.00 0.00 3.18
7177 9318 0.676466 TTCATCAAGCGCCCGACAAT 60.676 50.000 2.29 0.00 0.00 2.71
7178 9319 0.176910 TCATCAAGCGCCCGACAATA 59.823 50.000 2.29 0.00 0.00 1.90
7179 9320 0.583438 CATCAAGCGCCCGACAATAG 59.417 55.000 2.29 0.00 0.00 1.73
7180 9321 1.160329 ATCAAGCGCCCGACAATAGC 61.160 55.000 2.29 0.00 0.00 2.97
7181 9322 2.106074 CAAGCGCCCGACAATAGCA 61.106 57.895 2.29 0.00 0.00 3.49
7182 9323 2.106683 AAGCGCCCGACAATAGCAC 61.107 57.895 2.29 0.00 0.00 4.40
7183 9324 2.796483 AAGCGCCCGACAATAGCACA 62.796 55.000 2.29 0.00 0.00 4.57
7184 9325 2.395360 GCGCCCGACAATAGCACAA 61.395 57.895 0.00 0.00 0.00 3.33
7185 9326 1.715585 CGCCCGACAATAGCACAAG 59.284 57.895 0.00 0.00 0.00 3.16
7186 9327 1.429423 GCCCGACAATAGCACAAGC 59.571 57.895 0.00 0.00 42.56 4.01
7199 9340 2.523015 GCACAAGCTTCGATGAAATGG 58.477 47.619 0.00 0.00 37.91 3.16
7200 9341 2.162208 GCACAAGCTTCGATGAAATGGA 59.838 45.455 0.00 0.00 37.91 3.41
7201 9342 3.730061 GCACAAGCTTCGATGAAATGGAG 60.730 47.826 0.00 0.00 37.91 3.86
7202 9343 2.421424 ACAAGCTTCGATGAAATGGAGC 59.579 45.455 0.00 0.00 30.96 4.70
7203 9344 2.681848 CAAGCTTCGATGAAATGGAGCT 59.318 45.455 0.00 0.00 37.22 4.09
7204 9345 2.286872 AGCTTCGATGAAATGGAGCTG 58.713 47.619 3.31 0.00 35.51 4.24
7205 9346 1.268437 GCTTCGATGAAATGGAGCTGC 60.268 52.381 0.00 0.00 30.96 5.25
7206 9347 2.011947 CTTCGATGAAATGGAGCTGCA 58.988 47.619 11.44 11.44 30.96 4.41
7207 9348 2.336945 TCGATGAAATGGAGCTGCAT 57.663 45.000 15.88 15.88 0.00 3.96
7208 9349 1.944709 TCGATGAAATGGAGCTGCATG 59.055 47.619 22.38 8.04 0.00 4.06
7209 9350 1.599667 CGATGAAATGGAGCTGCATGC 60.600 52.381 22.38 16.64 43.29 4.06
7210 9351 1.407618 GATGAAATGGAGCTGCATGCA 59.592 47.619 22.38 21.29 45.94 3.96
7211 9352 0.815095 TGAAATGGAGCTGCATGCAG 59.185 50.000 37.81 37.81 45.94 4.41
7231 9372 1.796796 CTGCGCAAGGACTAAAGGC 59.203 57.895 13.05 0.00 38.28 4.35
7232 9373 0.955428 CTGCGCAAGGACTAAAGGCA 60.955 55.000 13.05 0.00 38.28 4.75
7233 9374 0.955428 TGCGCAAGGACTAAAGGCAG 60.955 55.000 8.16 0.00 38.28 4.85
7234 9375 1.648467 GCGCAAGGACTAAAGGCAGG 61.648 60.000 0.30 0.00 38.28 4.85
7235 9376 0.321653 CGCAAGGACTAAAGGCAGGT 60.322 55.000 0.00 0.00 0.00 4.00
7236 9377 1.168714 GCAAGGACTAAAGGCAGGTG 58.831 55.000 0.00 0.00 0.00 4.00
7237 9378 1.168714 CAAGGACTAAAGGCAGGTGC 58.831 55.000 0.00 0.00 41.14 5.01
7247 9388 2.677524 GCAGGTGCCAGCCAATCA 60.678 61.111 0.00 0.00 34.31 2.57
7248 9389 2.998279 GCAGGTGCCAGCCAATCAC 61.998 63.158 0.00 0.00 34.31 3.06
7249 9390 1.303888 CAGGTGCCAGCCAATCACT 60.304 57.895 0.00 0.00 0.00 3.41
7250 9391 0.035152 CAGGTGCCAGCCAATCACTA 60.035 55.000 0.00 0.00 0.00 2.74
7251 9392 0.921896 AGGTGCCAGCCAATCACTAT 59.078 50.000 0.00 0.00 0.00 2.12
7252 9393 1.027357 GGTGCCAGCCAATCACTATG 58.973 55.000 0.00 0.00 0.00 2.23
7253 9394 0.383231 GTGCCAGCCAATCACTATGC 59.617 55.000 0.00 0.00 0.00 3.14
7254 9395 0.752743 TGCCAGCCAATCACTATGCC 60.753 55.000 0.00 0.00 0.00 4.40
7255 9396 1.458639 GCCAGCCAATCACTATGCCC 61.459 60.000 0.00 0.00 0.00 5.36
7256 9397 0.184451 CCAGCCAATCACTATGCCCT 59.816 55.000 0.00 0.00 0.00 5.19
7257 9398 1.410648 CCAGCCAATCACTATGCCCTT 60.411 52.381 0.00 0.00 0.00 3.95
7258 9399 1.952296 CAGCCAATCACTATGCCCTTC 59.048 52.381 0.00 0.00 0.00 3.46
7259 9400 0.947244 GCCAATCACTATGCCCTTCG 59.053 55.000 0.00 0.00 0.00 3.79
7260 9401 1.747206 GCCAATCACTATGCCCTTCGT 60.747 52.381 0.00 0.00 0.00 3.85
7261 9402 2.643551 CCAATCACTATGCCCTTCGTT 58.356 47.619 0.00 0.00 0.00 3.85
7262 9403 2.355756 CCAATCACTATGCCCTTCGTTG 59.644 50.000 0.00 0.00 0.00 4.10
7263 9404 1.668419 ATCACTATGCCCTTCGTTGC 58.332 50.000 0.00 0.00 0.00 4.17
7264 9405 0.323302 TCACTATGCCCTTCGTTGCA 59.677 50.000 0.00 0.00 42.52 4.08
7266 9407 1.331756 CACTATGCCCTTCGTTGCATC 59.668 52.381 0.00 0.00 44.58 3.91
7267 9408 1.210478 ACTATGCCCTTCGTTGCATCT 59.790 47.619 0.00 0.00 44.58 2.90
7268 9409 1.869767 CTATGCCCTTCGTTGCATCTC 59.130 52.381 0.00 0.00 44.58 2.75
7269 9410 0.254178 ATGCCCTTCGTTGCATCTCT 59.746 50.000 0.00 0.00 44.58 3.10
7270 9411 0.391661 TGCCCTTCGTTGCATCTCTC 60.392 55.000 0.00 0.00 31.31 3.20
7271 9412 1.424493 GCCCTTCGTTGCATCTCTCG 61.424 60.000 0.00 0.00 0.00 4.04
7272 9413 1.424493 CCCTTCGTTGCATCTCTCGC 61.424 60.000 0.00 0.00 0.00 5.03
7273 9414 1.424493 CCTTCGTTGCATCTCTCGCC 61.424 60.000 0.00 0.00 0.00 5.54
7274 9415 0.737367 CTTCGTTGCATCTCTCGCCA 60.737 55.000 0.00 0.00 0.00 5.69
7275 9416 1.014044 TTCGTTGCATCTCTCGCCAC 61.014 55.000 0.00 0.00 0.00 5.01
7276 9417 2.792290 CGTTGCATCTCTCGCCACG 61.792 63.158 0.00 0.00 41.25 4.94
7277 9418 2.125552 TTGCATCTCTCGCCACGG 60.126 61.111 0.00 0.00 0.00 4.94
7278 9419 2.645192 TTGCATCTCTCGCCACGGA 61.645 57.895 0.00 0.00 0.00 4.69
7279 9420 2.166130 TTGCATCTCTCGCCACGGAA 62.166 55.000 0.00 0.00 0.00 4.30
7330 9473 1.477558 CCAGGGAGCGCCTAAAATCAT 60.478 52.381 2.29 0.00 0.00 2.45
7397 9540 4.473520 CCCAGCCGCCGTCTTCAT 62.474 66.667 0.00 0.00 0.00 2.57
7404 9547 3.788766 GCCGTCTTCATGCGCGTT 61.789 61.111 8.43 0.00 0.00 4.84
7405 9548 2.860293 CCGTCTTCATGCGCGTTT 59.140 55.556 8.43 0.00 0.00 3.60
7410 9570 2.968006 CGTCTTCATGCGCGTTTAAAAA 59.032 40.909 8.43 0.00 0.00 1.94
7673 9863 2.061182 GACGACGATTCCTCCCTCGG 62.061 65.000 0.00 0.00 39.16 4.63
7677 9867 3.849951 GATTCCTCCCTCGGCGCA 61.850 66.667 10.83 0.00 0.00 6.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.763360 TCATGGATCTTCGCCACAAATTT 59.237 39.130 0.00 0.00 38.44 1.82
70 71 2.262915 CCTGCTCAGACGGTGACC 59.737 66.667 0.00 0.00 0.00 4.02
71 72 1.080434 GTCCTGCTCAGACGGTGAC 60.080 63.158 0.00 0.00 0.00 3.67
72 73 2.626780 CGTCCTGCTCAGACGGTGA 61.627 63.158 13.60 0.00 38.50 4.02
73 74 2.126307 CGTCCTGCTCAGACGGTG 60.126 66.667 13.60 0.00 38.50 4.94
74 75 2.282251 TCGTCCTGCTCAGACGGT 60.282 61.111 18.84 0.00 41.94 4.83
137 138 2.541556 GTTCTGAAGGAGCCGACATAC 58.458 52.381 0.00 0.00 0.00 2.39
152 153 3.414700 GGTGCTCGTGCGGTTCTG 61.415 66.667 4.84 0.00 43.34 3.02
198 199 4.818005 TGAATGAAGGATCCATGAACGATG 59.182 41.667 15.82 0.00 0.00 3.84
210 213 3.126831 GCGATCGACTTGAATGAAGGAT 58.873 45.455 21.57 0.00 35.78 3.24
213 216 2.215138 CGAGCGATCGACTTGAATGAAG 59.785 50.000 20.02 0.00 37.73 3.02
218 221 0.179171 GACCGAGCGATCGACTTGAA 60.179 55.000 26.68 0.00 34.64 2.69
221 224 1.716826 GAGGACCGAGCGATCGACTT 61.717 60.000 26.68 14.27 34.64 3.01
223 226 1.989966 TTGAGGACCGAGCGATCGAC 61.990 60.000 26.68 17.31 34.64 4.20
224 227 1.715862 CTTGAGGACCGAGCGATCGA 61.716 60.000 26.68 0.00 34.64 3.59
225 228 1.298713 CTTGAGGACCGAGCGATCG 60.299 63.158 17.57 17.57 0.00 3.69
228 231 2.035155 TCCTTGAGGACCGAGCGA 59.965 61.111 0.00 0.00 39.78 4.93
240 243 4.672542 CGATGTGCTTTGTTACCATCCTTG 60.673 45.833 0.00 0.00 0.00 3.61
276 279 1.421382 CAAAGAAAAGGTGCGCATGG 58.579 50.000 15.91 0.00 0.00 3.66
378 447 3.566523 CGTTCAACAGTCTAGTGACCTC 58.433 50.000 0.00 0.00 43.91 3.85
385 454 4.748102 TGTAAAAGCCGTTCAACAGTCTAG 59.252 41.667 0.00 0.00 0.00 2.43
387 456 3.537580 TGTAAAAGCCGTTCAACAGTCT 58.462 40.909 0.00 0.00 0.00 3.24
388 457 3.873529 CTGTAAAAGCCGTTCAACAGTC 58.126 45.455 0.00 0.00 32.37 3.51
389 458 3.963383 CTGTAAAAGCCGTTCAACAGT 57.037 42.857 0.00 0.00 32.37 3.55
401 470 1.882198 CGCGTTGATGGCTGTAAAAG 58.118 50.000 0.00 0.00 0.00 2.27
404 473 2.395360 GGCGCGTTGATGGCTGTAA 61.395 57.895 8.43 0.00 0.00 2.41
419 488 2.100031 TAAGCTGTGCACATCGGCG 61.100 57.895 22.00 9.47 41.47 6.46
421 490 1.014044 ACGTAAGCTGTGCACATCGG 61.014 55.000 22.00 10.29 45.62 4.18
436 505 6.081049 CGAAAATGCCTAAAAATCACACGTA 58.919 36.000 0.00 0.00 0.00 3.57
439 508 4.625311 CCCGAAAATGCCTAAAAATCACAC 59.375 41.667 0.00 0.00 0.00 3.82
472 541 0.249280 TCACAACGTGATCTGTGCGT 60.249 50.000 12.25 4.21 42.20 5.24
473 542 0.858583 TTCACAACGTGATCTGTGCG 59.141 50.000 12.25 3.66 42.40 5.34
486 555 5.009631 CCCTACTTCACCATTCATTCACAA 58.990 41.667 0.00 0.00 0.00 3.33
487 556 4.588899 CCCTACTTCACCATTCATTCACA 58.411 43.478 0.00 0.00 0.00 3.58
517 586 1.089920 AAGATTGATGAGCACGCACC 58.910 50.000 0.00 0.00 0.00 5.01
520 589 4.272018 ACATCTTAAGATTGATGAGCACGC 59.728 41.667 15.49 0.00 41.69 5.34
521 590 5.980698 ACATCTTAAGATTGATGAGCACG 57.019 39.130 15.49 3.24 41.69 5.34
528 619 4.336433 CCGGCACAACATCTTAAGATTGAT 59.664 41.667 20.54 6.78 31.21 2.57
551 642 1.648467 GCACCTTCGAGATGTTGGGC 61.648 60.000 0.00 0.00 0.00 5.36
553 644 1.399440 CATGCACCTTCGAGATGTTGG 59.601 52.381 0.00 0.00 0.00 3.77
555 646 2.479566 ACATGCACCTTCGAGATGTT 57.520 45.000 0.00 0.00 0.00 2.71
556 647 2.159043 CCTACATGCACCTTCGAGATGT 60.159 50.000 0.00 0.00 0.00 3.06
570 661 3.521560 ACGCACACACTATTCCTACATG 58.478 45.455 0.00 0.00 0.00 3.21
571 662 3.887621 ACGCACACACTATTCCTACAT 57.112 42.857 0.00 0.00 0.00 2.29
579 670 1.277326 CACGCATACGCACACACTAT 58.723 50.000 0.00 0.00 45.53 2.12
583 674 0.876342 TGAACACGCATACGCACACA 60.876 50.000 0.00 0.00 45.53 3.72
595 686 4.058124 CTCATATACACCCCATGAACACG 58.942 47.826 0.00 0.00 0.00 4.49
602 693 3.912528 ACAGATGCTCATATACACCCCAT 59.087 43.478 0.00 0.00 0.00 4.00
604 695 3.324846 TGACAGATGCTCATATACACCCC 59.675 47.826 0.00 0.00 0.00 4.95
721 1756 0.392706 GGGGCAAACCAGGAAAGTTG 59.607 55.000 0.00 0.00 42.91 3.16
843 1878 2.345641 CGTGCGAGTTGGTATTTGAGAG 59.654 50.000 0.00 0.00 0.00 3.20
847 1882 0.179200 GGCGTGCGAGTTGGTATTTG 60.179 55.000 0.00 0.00 0.00 2.32
905 1940 3.256383 TCTGGAAACCTAAATCGACGTGA 59.744 43.478 0.00 0.00 0.00 4.35
943 1988 3.408634 CCTAACTCTTTTCTTTCCGCCA 58.591 45.455 0.00 0.00 0.00 5.69
1084 2139 1.333619 GTGTGACATGCCGTGTTCTTT 59.666 47.619 0.00 0.00 42.36 2.52
1092 2147 4.343323 TGGGGGTGTGACATGCCG 62.343 66.667 0.00 0.00 0.00 5.69
1093 2148 2.676471 GTGGGGGTGTGACATGCC 60.676 66.667 0.00 0.00 0.00 4.40
1094 2149 2.676471 GGTGGGGGTGTGACATGC 60.676 66.667 0.00 0.00 0.00 4.06
1095 2150 1.152599 TTGGTGGGGGTGTGACATG 59.847 57.895 0.00 0.00 0.00 3.21
1096 2151 1.152830 GTTGGTGGGGGTGTGACAT 59.847 57.895 0.00 0.00 0.00 3.06
1117 2172 0.179076 CTGCCTGTCAGACACACACA 60.179 55.000 0.00 0.00 45.72 3.72
1413 2471 0.461339 GGATTGGTGATGTACGCGGT 60.461 55.000 12.47 0.00 0.00 5.68
1433 2491 1.626321 TGAATCTGGTCTGGGCGTTTA 59.374 47.619 0.00 0.00 0.00 2.01
1834 3491 4.849329 CTCGTAGTGGTCGCCGGC 62.849 72.222 19.07 19.07 0.00 6.13
1835 3492 4.849329 GCTCGTAGTGGTCGCCGG 62.849 72.222 0.00 0.00 0.00 6.13
1930 3614 1.065701 CTCGTGGCGCTCATAGTAGTT 59.934 52.381 7.64 0.00 0.00 2.24
1933 3617 1.452953 CCCTCGTGGCGCTCATAGTA 61.453 60.000 7.64 0.00 0.00 1.82
1985 3690 2.567615 GGAAACTGCCCTCTGAAGACTA 59.432 50.000 0.00 0.00 0.00 2.59
2065 3770 4.581824 CAGTATAGCAGTGCCAATCCAATT 59.418 41.667 12.58 0.00 0.00 2.32
2084 3789 5.528690 GCAGCATGATCCTCAAAATACAGTA 59.471 40.000 0.00 0.00 39.69 2.74
2721 4438 1.668793 CAGAGCATGCACGGTGTCA 60.669 57.895 21.98 8.69 0.00 3.58
2942 4659 3.740115 AGTCTCACGGCAATACTTTTGT 58.260 40.909 0.00 0.00 0.00 2.83
2978 4695 6.984474 CGAAACTGTTGTGGTGGAGTATATAT 59.016 38.462 0.00 0.00 0.00 0.86
3452 5170 3.713003 TCCTTCTGCAATGGAGAGTAGA 58.287 45.455 4.35 0.86 0.00 2.59
3817 5535 0.878523 CACTGAAACGTGGCCGAAGA 60.879 55.000 0.00 0.00 37.88 2.87
3820 5538 2.970324 GCACTGAAACGTGGCCGA 60.970 61.111 0.00 0.00 37.88 5.54
3848 5566 7.990886 ACTTCCGAATATAGATGGCAAAAACTA 59.009 33.333 0.00 0.00 0.00 2.24
4241 5961 5.129485 TCCTTCAACAATTTAAAAGCCACCA 59.871 36.000 0.00 0.00 0.00 4.17
5437 7168 4.141574 CCATTTTCCTGGGCAATCATGAAT 60.142 41.667 0.00 0.00 32.28 2.57
5498 7229 1.076485 ATGGAAGCATGGTGGGAGC 60.076 57.895 0.00 0.00 0.00 4.70
5620 7351 3.207778 TGTTAGTAACTTGTTGGCGCTT 58.792 40.909 14.00 0.00 0.00 4.68
5739 7473 5.321102 TGTGCATAGGGTTGTAGTTTCAAT 58.679 37.500 0.00 0.00 0.00 2.57
6373 8120 1.740025 GCAAAGGGATTGACCGAGAAG 59.260 52.381 0.00 0.00 41.85 2.85
6557 8647 3.006430 TCAGTTTCAGGTAGCACATCGAA 59.994 43.478 0.00 0.00 0.00 3.71
6584 8674 6.128486 TCAGTTAGTTATATACACACCGGGA 58.872 40.000 6.32 0.00 0.00 5.14
6592 8682 9.764363 CCTGCAGAATTCAGTTAGTTATATACA 57.236 33.333 17.39 0.00 0.00 2.29
6593 8683 9.209175 CCCTGCAGAATTCAGTTAGTTATATAC 57.791 37.037 17.39 0.00 0.00 1.47
6594 8684 8.375506 CCCCTGCAGAATTCAGTTAGTTATATA 58.624 37.037 17.39 0.00 0.00 0.86
6597 8687 5.044846 ACCCCTGCAGAATTCAGTTAGTTAT 60.045 40.000 17.39 0.00 0.00 1.89
6643 8733 5.190330 TCTTTCCTCATCTGATTCACCATGA 59.810 40.000 0.00 4.30 0.00 3.07
6695 8820 3.254024 AAGCGCCATGACCGGTCTT 62.254 57.895 33.39 25.40 35.12 3.01
6740 8865 1.454201 TCAAGTGAAACACGTTGGCA 58.546 45.000 0.00 0.00 41.43 4.92
6759 8884 2.171209 TACGCAGGCTGTGTGCTGAT 62.171 55.000 36.69 16.42 41.73 2.90
6838 8967 8.653338 TGCACTTATTTATCGAACAAGTACTTC 58.347 33.333 4.77 0.00 0.00 3.01
6844 8973 9.935682 ATAATGTGCACTTATTTATCGAACAAG 57.064 29.630 19.41 0.00 0.00 3.16
6874 9009 8.477256 CCCACTCCATAATGTGTCATAATTTTT 58.523 33.333 0.00 0.00 32.76 1.94
6875 9010 7.069826 CCCCACTCCATAATGTGTCATAATTTT 59.930 37.037 0.00 0.00 32.76 1.82
6876 9011 6.550854 CCCCACTCCATAATGTGTCATAATTT 59.449 38.462 0.00 0.00 32.76 1.82
6877 9012 6.070656 CCCCACTCCATAATGTGTCATAATT 58.929 40.000 0.00 0.00 32.76 1.40
6878 9013 5.134339 ACCCCACTCCATAATGTGTCATAAT 59.866 40.000 0.00 0.00 32.76 1.28
6882 9017 2.274542 ACCCCACTCCATAATGTGTCA 58.725 47.619 0.00 0.00 32.76 3.58
6911 9046 1.340889 TGGATTGCACCTTTTCACTGC 59.659 47.619 0.00 0.00 0.00 4.40
6912 9047 2.288395 GGTGGATTGCACCTTTTCACTG 60.288 50.000 19.15 0.00 39.52 3.66
6913 9048 1.963515 GGTGGATTGCACCTTTTCACT 59.036 47.619 19.15 0.00 39.52 3.41
6917 9055 2.893424 AGATGGTGGATTGCACCTTTT 58.107 42.857 25.30 13.45 42.92 2.27
6928 9066 5.548056 AGTTAAAGAGGAGAAAGATGGTGGA 59.452 40.000 0.00 0.00 0.00 4.02
6964 9102 8.033038 TCACTTCATACATGTACTTAACTCACC 58.967 37.037 7.96 0.00 0.00 4.02
6965 9103 8.981724 TCACTTCATACATGTACTTAACTCAC 57.018 34.615 7.96 0.00 0.00 3.51
6976 9114 7.119699 CACATGGTTTACTCACTTCATACATGT 59.880 37.037 2.69 2.69 43.97 3.21
6994 9132 6.267471 AGACCAATAACATTCAACACATGGTT 59.733 34.615 0.00 0.00 38.67 3.67
7024 9163 2.159327 TGCTCTCACATCACACAGTG 57.841 50.000 0.00 0.00 37.10 3.66
7025 9164 2.916702 TTGCTCTCACATCACACAGT 57.083 45.000 0.00 0.00 0.00 3.55
7027 9166 5.518848 AAAAATTGCTCTCACATCACACA 57.481 34.783 0.00 0.00 0.00 3.72
7059 9200 7.810759 GCTGACTAGGACTTATTATACTTGCTC 59.189 40.741 0.00 0.00 0.00 4.26
7064 9205 8.398878 GTCTGCTGACTAGGACTTATTATACT 57.601 38.462 15.81 0.00 39.94 2.12
7080 9221 5.751028 GTGGAACATCTTATAGTCTGCTGAC 59.249 44.000 15.36 15.36 44.52 3.51
7081 9222 5.450550 CGTGGAACATCTTATAGTCTGCTGA 60.451 44.000 0.00 0.00 44.52 4.26
7082 9223 4.742167 CGTGGAACATCTTATAGTCTGCTG 59.258 45.833 0.00 0.00 44.52 4.41
7083 9224 4.402793 ACGTGGAACATCTTATAGTCTGCT 59.597 41.667 0.00 0.00 44.52 4.24
7084 9225 4.683832 ACGTGGAACATCTTATAGTCTGC 58.316 43.478 0.00 0.00 44.52 4.26
7085 9226 5.891451 TGACGTGGAACATCTTATAGTCTG 58.109 41.667 0.00 0.00 44.52 3.51
7086 9227 5.450688 GCTGACGTGGAACATCTTATAGTCT 60.451 44.000 0.00 0.00 44.52 3.24
7087 9228 4.740695 GCTGACGTGGAACATCTTATAGTC 59.259 45.833 0.00 0.00 44.52 2.59
7088 9229 4.159693 TGCTGACGTGGAACATCTTATAGT 59.840 41.667 0.00 0.00 44.52 2.12
7089 9230 4.682787 TGCTGACGTGGAACATCTTATAG 58.317 43.478 0.00 0.00 44.52 1.31
7090 9231 4.729227 TGCTGACGTGGAACATCTTATA 57.271 40.909 0.00 0.00 44.52 0.98
7091 9232 3.610040 TGCTGACGTGGAACATCTTAT 57.390 42.857 0.00 0.00 44.52 1.73
7092 9233 3.394674 TTGCTGACGTGGAACATCTTA 57.605 42.857 0.00 0.00 44.52 2.10
7093 9234 2.254546 TTGCTGACGTGGAACATCTT 57.745 45.000 0.00 0.00 44.52 2.40
7094 9235 2.027745 AGATTGCTGACGTGGAACATCT 60.028 45.455 0.00 0.00 44.52 2.90
7095 9236 2.350522 AGATTGCTGACGTGGAACATC 58.649 47.619 0.00 0.00 44.52 3.06
7096 9237 2.479566 AGATTGCTGACGTGGAACAT 57.520 45.000 0.00 0.00 44.52 2.71
7097 9238 2.254546 AAGATTGCTGACGTGGAACA 57.745 45.000 0.00 0.00 35.74 3.18
7098 9239 2.092211 CGTAAGATTGCTGACGTGGAAC 59.908 50.000 0.00 0.00 42.82 3.62
7099 9240 2.333926 CGTAAGATTGCTGACGTGGAA 58.666 47.619 0.00 0.00 42.82 3.53
7100 9241 1.990799 CGTAAGATTGCTGACGTGGA 58.009 50.000 0.00 0.00 42.82 4.02
7105 9246 5.591643 TTTCTTCACGTAAGATTGCTGAC 57.408 39.130 7.86 0.00 43.75 3.51
7106 9247 5.989168 TCTTTTCTTCACGTAAGATTGCTGA 59.011 36.000 7.86 2.68 43.75 4.26
7107 9248 6.146184 TCTCTTTTCTTCACGTAAGATTGCTG 59.854 38.462 7.86 0.00 43.75 4.41
7108 9249 6.223852 TCTCTTTTCTTCACGTAAGATTGCT 58.776 36.000 7.86 0.00 43.75 3.91
7109 9250 6.467723 TCTCTTTTCTTCACGTAAGATTGC 57.532 37.500 7.86 0.00 43.75 3.56
7110 9251 9.884465 ATTTTCTCTTTTCTTCACGTAAGATTG 57.116 29.630 7.86 3.70 43.75 2.67
7117 9258 9.937175 CTCTTTTATTTTCTCTTTTCTTCACGT 57.063 29.630 0.00 0.00 0.00 4.49
7123 9264 9.868160 TCCCTTCTCTTTTATTTTCTCTTTTCT 57.132 29.630 0.00 0.00 0.00 2.52
7125 9266 8.580720 GCTCCCTTCTCTTTTATTTTCTCTTTT 58.419 33.333 0.00 0.00 0.00 2.27
7126 9267 7.177568 GGCTCCCTTCTCTTTTATTTTCTCTTT 59.822 37.037 0.00 0.00 0.00 2.52
7127 9268 6.661377 GGCTCCCTTCTCTTTTATTTTCTCTT 59.339 38.462 0.00 0.00 0.00 2.85
7128 9269 6.184068 GGCTCCCTTCTCTTTTATTTTCTCT 58.816 40.000 0.00 0.00 0.00 3.10
7129 9270 5.065346 CGGCTCCCTTCTCTTTTATTTTCTC 59.935 44.000 0.00 0.00 0.00 2.87
7130 9271 4.944317 CGGCTCCCTTCTCTTTTATTTTCT 59.056 41.667 0.00 0.00 0.00 2.52
7131 9272 4.096532 CCGGCTCCCTTCTCTTTTATTTTC 59.903 45.833 0.00 0.00 0.00 2.29
7132 9273 4.017126 CCGGCTCCCTTCTCTTTTATTTT 58.983 43.478 0.00 0.00 0.00 1.82
7133 9274 3.621558 CCGGCTCCCTTCTCTTTTATTT 58.378 45.455 0.00 0.00 0.00 1.40
7134 9275 2.684038 GCCGGCTCCCTTCTCTTTTATT 60.684 50.000 22.15 0.00 0.00 1.40
7135 9276 1.134068 GCCGGCTCCCTTCTCTTTTAT 60.134 52.381 22.15 0.00 0.00 1.40
7136 9277 0.252197 GCCGGCTCCCTTCTCTTTTA 59.748 55.000 22.15 0.00 0.00 1.52
7137 9278 1.002011 GCCGGCTCCCTTCTCTTTT 60.002 57.895 22.15 0.00 0.00 2.27
7138 9279 2.671682 GCCGGCTCCCTTCTCTTT 59.328 61.111 22.15 0.00 0.00 2.52
7139 9280 3.775654 CGCCGGCTCCCTTCTCTT 61.776 66.667 26.68 0.00 0.00 2.85
7150 9291 4.543084 GCTTGATGAAGCGCCGGC 62.543 66.667 19.07 19.07 45.12 6.13
7157 9298 1.298157 TTGTCGGGCGCTTGATGAAG 61.298 55.000 7.64 0.00 0.00 3.02
7158 9299 0.676466 ATTGTCGGGCGCTTGATGAA 60.676 50.000 7.64 3.59 0.00 2.57
7159 9300 0.176910 TATTGTCGGGCGCTTGATGA 59.823 50.000 7.64 0.00 0.00 2.92
7160 9301 0.583438 CTATTGTCGGGCGCTTGATG 59.417 55.000 7.64 0.00 0.00 3.07
7161 9302 1.160329 GCTATTGTCGGGCGCTTGAT 61.160 55.000 7.64 0.00 0.00 2.57
7162 9303 1.813753 GCTATTGTCGGGCGCTTGA 60.814 57.895 7.64 2.02 0.00 3.02
7163 9304 2.106074 TGCTATTGTCGGGCGCTTG 61.106 57.895 7.64 0.00 0.00 4.01
7164 9305 2.106683 GTGCTATTGTCGGGCGCTT 61.107 57.895 7.64 0.00 34.21 4.68
7165 9306 2.511600 GTGCTATTGTCGGGCGCT 60.512 61.111 7.64 0.00 34.21 5.92
7166 9307 2.309764 CTTGTGCTATTGTCGGGCGC 62.310 60.000 0.00 0.00 37.05 6.53
7167 9308 1.715585 CTTGTGCTATTGTCGGGCG 59.284 57.895 0.00 0.00 0.00 6.13
7168 9309 1.429423 GCTTGTGCTATTGTCGGGC 59.571 57.895 0.00 0.00 36.03 6.13
7179 9320 2.162208 TCCATTTCATCGAAGCTTGTGC 59.838 45.455 2.10 0.00 40.05 4.57
7180 9321 3.730061 GCTCCATTTCATCGAAGCTTGTG 60.730 47.826 2.10 0.00 0.00 3.33
7181 9322 2.421424 GCTCCATTTCATCGAAGCTTGT 59.579 45.455 2.10 0.00 0.00 3.16
7182 9323 2.681848 AGCTCCATTTCATCGAAGCTTG 59.318 45.455 2.10 0.00 0.00 4.01
7183 9324 2.681848 CAGCTCCATTTCATCGAAGCTT 59.318 45.455 0.00 0.00 0.00 3.74
7184 9325 2.286872 CAGCTCCATTTCATCGAAGCT 58.713 47.619 0.00 0.00 0.00 3.74
7185 9326 1.268437 GCAGCTCCATTTCATCGAAGC 60.268 52.381 0.00 0.00 0.00 3.86
7186 9327 2.011947 TGCAGCTCCATTTCATCGAAG 58.988 47.619 0.00 0.00 0.00 3.79
7187 9328 2.112380 TGCAGCTCCATTTCATCGAA 57.888 45.000 0.00 0.00 0.00 3.71
7188 9329 1.944709 CATGCAGCTCCATTTCATCGA 59.055 47.619 0.00 0.00 0.00 3.59
7189 9330 1.599667 GCATGCAGCTCCATTTCATCG 60.600 52.381 14.21 0.00 41.15 3.84
7190 9331 1.407618 TGCATGCAGCTCCATTTCATC 59.592 47.619 18.46 0.00 45.94 2.92
7191 9332 1.409064 CTGCATGCAGCTCCATTTCAT 59.591 47.619 33.18 0.00 45.94 2.57
7192 9333 0.815095 CTGCATGCAGCTCCATTTCA 59.185 50.000 33.18 0.00 45.94 2.69
7193 9334 3.642901 CTGCATGCAGCTCCATTTC 57.357 52.632 33.18 0.00 45.94 2.17
7205 9346 4.492160 CCTTGCGCAGGCTGCATG 62.492 66.667 35.94 23.02 45.36 4.06
7206 9347 4.728110 TCCTTGCGCAGGCTGCAT 62.728 61.111 35.94 0.00 45.36 3.96
7208 9349 3.958147 TAGTCCTTGCGCAGGCTGC 62.958 63.158 29.22 29.22 43.55 5.25
7209 9350 0.955428 TTTAGTCCTTGCGCAGGCTG 60.955 55.000 15.01 10.94 43.55 4.85
7210 9351 0.674895 CTTTAGTCCTTGCGCAGGCT 60.675 55.000 15.01 11.68 43.55 4.58
7211 9352 1.648467 CCTTTAGTCCTTGCGCAGGC 61.648 60.000 15.01 3.07 43.55 4.85
7212 9353 1.648467 GCCTTTAGTCCTTGCGCAGG 61.648 60.000 13.36 13.36 45.64 4.85
7213 9354 0.955428 TGCCTTTAGTCCTTGCGCAG 60.955 55.000 11.31 4.92 0.00 5.18
7214 9355 0.955428 CTGCCTTTAGTCCTTGCGCA 60.955 55.000 5.66 5.66 0.00 6.09
7215 9356 1.648467 CCTGCCTTTAGTCCTTGCGC 61.648 60.000 0.00 0.00 0.00 6.09
7216 9357 0.321653 ACCTGCCTTTAGTCCTTGCG 60.322 55.000 0.00 0.00 0.00 4.85
7217 9358 1.168714 CACCTGCCTTTAGTCCTTGC 58.831 55.000 0.00 0.00 0.00 4.01
7218 9359 1.168714 GCACCTGCCTTTAGTCCTTG 58.831 55.000 0.00 0.00 34.31 3.61
7219 9360 3.652581 GCACCTGCCTTTAGTCCTT 57.347 52.632 0.00 0.00 34.31 3.36
7230 9371 2.677524 TGATTGGCTGGCACCTGC 60.678 61.111 2.29 9.87 39.65 4.85
7231 9372 0.035152 TAGTGATTGGCTGGCACCTG 60.035 55.000 2.29 0.00 33.14 4.00
7232 9373 0.921896 ATAGTGATTGGCTGGCACCT 59.078 50.000 2.29 0.39 33.14 4.00
7233 9374 1.027357 CATAGTGATTGGCTGGCACC 58.973 55.000 2.29 0.00 33.14 5.01
7234 9375 0.383231 GCATAGTGATTGGCTGGCAC 59.617 55.000 2.29 0.00 0.00 5.01
7235 9376 0.752743 GGCATAGTGATTGGCTGGCA 60.753 55.000 0.00 0.00 36.76 4.92
7236 9377 1.458639 GGGCATAGTGATTGGCTGGC 61.459 60.000 0.00 0.00 39.44 4.85
7237 9378 0.184451 AGGGCATAGTGATTGGCTGG 59.816 55.000 0.00 0.00 39.44 4.85
7238 9379 1.952296 GAAGGGCATAGTGATTGGCTG 59.048 52.381 0.00 0.00 39.44 4.85
7239 9380 1.475751 CGAAGGGCATAGTGATTGGCT 60.476 52.381 0.00 0.00 39.44 4.75
7240 9381 0.947244 CGAAGGGCATAGTGATTGGC 59.053 55.000 0.00 0.00 38.82 4.52
7241 9382 2.332063 ACGAAGGGCATAGTGATTGG 57.668 50.000 0.00 0.00 0.00 3.16
7242 9383 2.223340 GCAACGAAGGGCATAGTGATTG 60.223 50.000 0.00 0.00 32.25 2.67
7243 9384 2.017049 GCAACGAAGGGCATAGTGATT 58.983 47.619 0.00 0.00 32.25 2.57
7244 9385 1.065491 TGCAACGAAGGGCATAGTGAT 60.065 47.619 0.00 0.00 37.04 3.06
7245 9386 0.323302 TGCAACGAAGGGCATAGTGA 59.677 50.000 0.00 0.00 37.04 3.41
7246 9387 2.853159 TGCAACGAAGGGCATAGTG 58.147 52.632 0.00 0.00 37.04 2.74
7251 9392 0.391661 GAGAGATGCAACGAAGGGCA 60.392 55.000 0.00 0.00 45.12 5.36
7252 9393 1.424493 CGAGAGATGCAACGAAGGGC 61.424 60.000 0.00 0.00 0.00 5.19
7253 9394 1.424493 GCGAGAGATGCAACGAAGGG 61.424 60.000 0.00 0.00 0.00 3.95
7254 9395 1.424493 GGCGAGAGATGCAACGAAGG 61.424 60.000 0.00 0.00 0.00 3.46
7255 9396 0.737367 TGGCGAGAGATGCAACGAAG 60.737 55.000 0.00 0.00 0.00 3.79
7256 9397 1.014044 GTGGCGAGAGATGCAACGAA 61.014 55.000 0.00 0.00 0.00 3.85
7257 9398 1.446099 GTGGCGAGAGATGCAACGA 60.446 57.895 0.00 0.00 0.00 3.85
7258 9399 3.084579 GTGGCGAGAGATGCAACG 58.915 61.111 0.00 0.00 0.00 4.10
7259 9400 2.456119 CCGTGGCGAGAGATGCAAC 61.456 63.158 0.00 0.00 32.77 4.17
7260 9401 2.125552 CCGTGGCGAGAGATGCAA 60.126 61.111 0.00 0.00 0.00 4.08
7261 9402 2.563050 CTTCCGTGGCGAGAGATGCA 62.563 60.000 0.00 0.00 0.00 3.96
7262 9403 1.880340 CTTCCGTGGCGAGAGATGC 60.880 63.158 0.00 0.00 0.00 3.91
7263 9404 1.880340 GCTTCCGTGGCGAGAGATG 60.880 63.158 0.00 0.00 0.00 2.90
7264 9405 2.351244 TGCTTCCGTGGCGAGAGAT 61.351 57.895 0.00 0.00 0.00 2.75
7265 9406 2.989253 TGCTTCCGTGGCGAGAGA 60.989 61.111 0.00 0.00 0.00 3.10
7266 9407 1.934220 TAGTGCTTCCGTGGCGAGAG 61.934 60.000 0.00 0.00 0.00 3.20
7267 9408 1.529152 TTAGTGCTTCCGTGGCGAGA 61.529 55.000 0.00 0.00 0.00 4.04
7268 9409 1.078759 CTTAGTGCTTCCGTGGCGAG 61.079 60.000 0.00 0.00 0.00 5.03
7269 9410 1.080093 CTTAGTGCTTCCGTGGCGA 60.080 57.895 0.00 0.00 0.00 5.54
7270 9411 1.078759 CTCTTAGTGCTTCCGTGGCG 61.079 60.000 0.00 0.00 0.00 5.69
7271 9412 1.362406 GCTCTTAGTGCTTCCGTGGC 61.362 60.000 0.00 0.00 0.00 5.01
7272 9413 0.037326 TGCTCTTAGTGCTTCCGTGG 60.037 55.000 7.78 0.00 0.00 4.94
7273 9414 1.929836 GATGCTCTTAGTGCTTCCGTG 59.070 52.381 7.78 0.00 0.00 4.94
7274 9415 1.827969 AGATGCTCTTAGTGCTTCCGT 59.172 47.619 15.31 0.15 35.89 4.69
7275 9416 2.468831 GAGATGCTCTTAGTGCTTCCG 58.531 52.381 15.31 0.00 35.89 4.30
7276 9417 2.169352 TGGAGATGCTCTTAGTGCTTCC 59.831 50.000 15.31 14.44 35.89 3.46
7277 9418 3.456280 CTGGAGATGCTCTTAGTGCTTC 58.544 50.000 12.30 12.30 35.62 3.86
7278 9419 2.419851 GCTGGAGATGCTCTTAGTGCTT 60.420 50.000 7.78 1.19 0.00 3.91
7279 9420 1.138661 GCTGGAGATGCTCTTAGTGCT 59.861 52.381 7.78 0.00 0.00 4.40
7308 9449 1.279025 ATTTTAGGCGCTCCCTGGGA 61.279 55.000 16.13 16.13 45.91 4.37
7316 9458 0.846693 AGGGGATGATTTTAGGCGCT 59.153 50.000 7.64 0.00 0.00 5.92
7414 9574 7.410728 CGCCAAACTTTGAACTTTGCTATATTG 60.411 37.037 2.87 0.00 0.00 1.90
7632 9822 2.962827 GAGGACAGCGACGACGACA 61.963 63.158 12.29 0.00 42.66 4.35
7757 9947 1.269723 CGATGACGCTGCCCTAGAATA 59.730 52.381 0.00 0.00 0.00 1.75
7768 9958 2.405594 GAGCTCGACGATGACGCT 59.594 61.111 8.86 8.86 43.96 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.