Multiple sequence alignment - TraesCS4A01G235200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G235200 chr4A 100.000 4300 0 0 1 4300 544054775 544059074 0.000000e+00 7941.0
1 TraesCS4A01G235200 chr4D 94.134 2097 102 9 1888 3967 52755696 52753604 0.000000e+00 3171.0
2 TraesCS4A01G235200 chr4D 92.954 1405 64 14 1 1393 52757564 52756183 0.000000e+00 2013.0
3 TraesCS4A01G235200 chr4D 90.043 462 32 8 1428 1886 52756186 52755736 1.720000e-163 586.0
4 TraesCS4A01G235200 chr4D 82.946 129 19 3 559 686 398275980 398275854 3.510000e-21 113.0
5 TraesCS4A01G235200 chr4B 94.159 1267 70 2 2665 3929 77515137 77513873 0.000000e+00 1927.0
6 TraesCS4A01G235200 chr4B 92.068 706 41 6 1888 2582 77515837 77515136 0.000000e+00 979.0
7 TraesCS4A01G235200 chr4B 93.414 577 22 8 748 1320 77517234 77516670 0.000000e+00 841.0
8 TraesCS4A01G235200 chr4B 89.466 674 58 5 1 671 77590833 77590170 0.000000e+00 839.0
9 TraesCS4A01G235200 chr4B 88.017 459 40 9 1434 1886 77516326 77515877 2.940000e-146 529.0
10 TraesCS4A01G235200 chr4B 92.674 273 20 0 4028 4300 77513817 77513545 1.120000e-105 394.0
11 TraesCS4A01G235200 chr4B 81.600 125 20 3 559 682 490657291 490657169 2.740000e-17 100.0
12 TraesCS4A01G235200 chr4B 91.304 46 0 1 3967 4012 70256632 70256673 4.640000e-05 60.2
13 TraesCS4A01G235200 chr2D 87.629 97 11 1 2581 2676 406941826 406941730 1.260000e-20 111.0
14 TraesCS4A01G235200 chr6D 87.368 95 10 2 2572 2666 413078231 413078323 1.640000e-19 108.0
15 TraesCS4A01G235200 chr3B 86.000 100 12 1 2568 2665 740890231 740890330 5.880000e-19 106.0
16 TraesCS4A01G235200 chr3B 86.667 90 12 0 2581 2670 380680316 380680405 2.740000e-17 100.0
17 TraesCS4A01G235200 chr3A 87.778 90 11 0 2581 2670 377144674 377144763 5.880000e-19 106.0
18 TraesCS4A01G235200 chr6B 88.372 86 8 1 2581 2666 622735322 622735239 7.610000e-18 102.0
19 TraesCS4A01G235200 chr5B 88.372 86 9 1 2581 2666 671127857 671127773 7.610000e-18 102.0
20 TraesCS4A01G235200 chr5B 77.108 166 30 5 529 687 670796420 670796256 5.920000e-14 89.8
21 TraesCS4A01G235200 chr7D 85.294 102 7 6 2571 2665 265692548 265692648 9.840000e-17 99.0
22 TraesCS4A01G235200 chr7D 87.500 48 2 1 3965 4012 156217771 156217728 8.000000e-03 52.8
23 TraesCS4A01G235200 chr7A 100.000 28 0 0 3985 4012 120981923 120981950 8.000000e-03 52.8
24 TraesCS4A01G235200 chr7A 87.500 48 2 1 3965 4012 210853650 210853607 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G235200 chr4A 544054775 544059074 4299 False 7941.000000 7941 100.0000 1 4300 1 chr4A.!!$F1 4299
1 TraesCS4A01G235200 chr4D 52753604 52757564 3960 True 1923.333333 3171 92.3770 1 3967 3 chr4D.!!$R2 3966
2 TraesCS4A01G235200 chr4B 77513545 77517234 3689 True 934.000000 1927 92.0664 748 4300 5 chr4B.!!$R3 3552
3 TraesCS4A01G235200 chr4B 77590170 77590833 663 True 839.000000 839 89.4660 1 671 1 chr4B.!!$R1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
672 680 0.830648 GGCACCCACTCAGCACTATA 59.169 55.0 0.0 0.0 0.0 1.31 F
1420 1692 0.253044 TCTTGATCTTTGCGGGGGAG 59.747 55.0 0.0 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2190 2515 0.181114 ATAGCGCCCTTCATCTGCAA 59.819 50.0 2.29 0.0 0.0 4.08 R
3402 3739 0.525668 GTCCGACGAGTCATGCGATT 60.526 55.0 0.00 0.0 0.0 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 7.259088 AGGTTAATCAACACATCTACCTTCT 57.741 36.000 0.00 0.00 36.29 2.85
89 90 7.512058 ACACATCTACCTTCTCCATCATAATCT 59.488 37.037 0.00 0.00 0.00 2.40
140 142 7.898014 GGACCTTTCCAAATATTTATCACCT 57.102 36.000 0.00 0.00 42.30 4.00
173 175 8.649841 CGCAAATGAAATTTCTTAATGATGTGT 58.350 29.630 18.64 0.00 44.81 3.72
233 235 7.054491 AGTATCTTTTGAATGTTGGTTGCTT 57.946 32.000 0.00 0.00 0.00 3.91
236 238 2.791383 TTGAATGTTGGTTGCTTCGG 57.209 45.000 0.00 0.00 0.00 4.30
298 300 2.715737 TTTTCTGGGGATTTTTCGCG 57.284 45.000 0.00 0.00 0.00 5.87
344 346 4.787135 TTTGGGACATCCATACATAGCA 57.213 40.909 0.00 0.00 46.52 3.49
420 423 4.219725 TCTTTGTTTGCCCTTATAACTGGC 59.780 41.667 12.44 12.44 45.56 4.85
421 424 3.449746 TGTTTGCCCTTATAACTGGCT 57.550 42.857 17.79 0.00 45.56 4.75
557 560 2.893489 GAGTGGGATAAATCATTGGGGC 59.107 50.000 0.00 0.00 0.00 5.80
672 680 0.830648 GGCACCCACTCAGCACTATA 59.169 55.000 0.00 0.00 0.00 1.31
713 721 5.402398 CACCTGATGCTAGTTTTAAAAGGC 58.598 41.667 0.00 7.13 0.00 4.35
714 722 4.462834 ACCTGATGCTAGTTTTAAAAGGCC 59.537 41.667 0.00 0.00 0.00 5.19
726 734 4.817318 TTAAAAGGCCAATGATGAACCC 57.183 40.909 5.01 0.00 0.00 4.11
745 754 2.292016 CCCGCATACAGTCACACAAAAA 59.708 45.455 0.00 0.00 0.00 1.94
804 813 2.959030 GTTCTGAAAGGCCCACTCTTTT 59.041 45.455 0.00 0.00 34.92 2.27
847 857 6.884280 AAAAGAGGGTCTGAGTTTAACATG 57.116 37.500 0.00 0.00 0.00 3.21
871 881 2.413310 TTTAGAATTCGGCCCACTCC 57.587 50.000 0.00 0.00 0.00 3.85
882 892 2.808202 CGGCCCACTCCTTATTCATCAG 60.808 54.545 0.00 0.00 0.00 2.90
934 947 1.044611 GGTAAAGCAAAAGGCCCACA 58.955 50.000 0.00 0.00 46.50 4.17
958 972 2.611518 CCTCGCACTCTAAAAGTCCAG 58.388 52.381 0.00 0.00 35.45 3.86
1079 1093 1.980784 CTCCTCCACCATGGCAGAGG 61.981 65.000 31.79 31.79 46.11 3.69
1316 1330 2.039084 CCTCTGCCAACTTCCAGTTACT 59.961 50.000 0.00 0.00 36.03 2.24
1317 1331 3.070018 CTCTGCCAACTTCCAGTTACTG 58.930 50.000 5.22 5.22 36.03 2.74
1334 1348 2.753247 ACTGTTCCCTCTCATACTCCC 58.247 52.381 0.00 0.00 0.00 4.30
1335 1349 2.043227 CTGTTCCCTCTCATACTCCCC 58.957 57.143 0.00 0.00 0.00 4.81
1336 1350 1.364678 TGTTCCCTCTCATACTCCCCA 59.635 52.381 0.00 0.00 0.00 4.96
1337 1351 1.763545 GTTCCCTCTCATACTCCCCAC 59.236 57.143 0.00 0.00 0.00 4.61
1338 1352 0.264955 TCCCTCTCATACTCCCCACC 59.735 60.000 0.00 0.00 0.00 4.61
1339 1353 0.266152 CCCTCTCATACTCCCCACCT 59.734 60.000 0.00 0.00 0.00 4.00
1340 1354 1.710816 CCTCTCATACTCCCCACCTC 58.289 60.000 0.00 0.00 0.00 3.85
1341 1355 1.710816 CTCTCATACTCCCCACCTCC 58.289 60.000 0.00 0.00 0.00 4.30
1342 1356 0.264955 TCTCATACTCCCCACCTCCC 59.735 60.000 0.00 0.00 0.00 4.30
1343 1357 0.764752 CTCATACTCCCCACCTCCCC 60.765 65.000 0.00 0.00 0.00 4.81
1344 1358 1.770518 CATACTCCCCACCTCCCCC 60.771 68.421 0.00 0.00 0.00 5.40
1361 1375 1.817941 CCCACCCAAATAGGTCGCG 60.818 63.158 0.00 0.00 38.39 5.87
1389 1403 2.618241 TCTTGTTCATGCTCGCTGTTTT 59.382 40.909 0.00 0.00 0.00 2.43
1402 1674 2.666619 CGCTGTTTTGGTGCAGAAGATC 60.667 50.000 0.00 0.00 34.87 2.75
1403 1675 2.555757 GCTGTTTTGGTGCAGAAGATCT 59.444 45.455 0.00 0.00 34.87 2.75
1404 1676 3.005155 GCTGTTTTGGTGCAGAAGATCTT 59.995 43.478 7.95 7.95 34.87 2.40
1405 1677 4.543692 CTGTTTTGGTGCAGAAGATCTTG 58.456 43.478 14.00 0.63 34.87 3.02
1406 1678 4.206375 TGTTTTGGTGCAGAAGATCTTGA 58.794 39.130 14.00 0.00 0.00 3.02
1407 1679 4.828939 TGTTTTGGTGCAGAAGATCTTGAT 59.171 37.500 14.00 0.00 0.00 2.57
1408 1680 5.048504 TGTTTTGGTGCAGAAGATCTTGATC 60.049 40.000 14.00 0.00 0.00 2.92
1409 1681 4.564782 TTGGTGCAGAAGATCTTGATCT 57.435 40.909 14.00 7.27 0.00 2.75
1410 1682 4.564782 TGGTGCAGAAGATCTTGATCTT 57.435 40.909 21.53 21.53 43.04 2.40
1411 1683 4.914983 TGGTGCAGAAGATCTTGATCTTT 58.085 39.130 22.06 12.24 40.67 2.52
1412 1684 4.698780 TGGTGCAGAAGATCTTGATCTTTG 59.301 41.667 22.06 20.43 40.67 2.77
1413 1685 4.438472 GGTGCAGAAGATCTTGATCTTTGC 60.438 45.833 28.49 28.49 40.67 3.68
1414 1686 3.373130 TGCAGAAGATCTTGATCTTTGCG 59.627 43.478 28.73 20.90 41.70 4.85
1415 1687 3.242673 GCAGAAGATCTTGATCTTTGCGG 60.243 47.826 25.41 17.47 40.67 5.69
1416 1688 3.311871 CAGAAGATCTTGATCTTTGCGGG 59.688 47.826 22.06 10.10 40.67 6.13
1417 1689 2.338577 AGATCTTGATCTTTGCGGGG 57.661 50.000 7.27 0.00 0.00 5.73
1418 1690 1.133976 AGATCTTGATCTTTGCGGGGG 60.134 52.381 7.27 0.00 0.00 5.40
1419 1691 0.918983 ATCTTGATCTTTGCGGGGGA 59.081 50.000 0.00 0.00 0.00 4.81
1420 1692 0.253044 TCTTGATCTTTGCGGGGGAG 59.747 55.000 0.00 0.00 0.00 4.30
1421 1693 0.253044 CTTGATCTTTGCGGGGGAGA 59.747 55.000 0.00 0.00 0.00 3.71
1422 1694 0.695924 TTGATCTTTGCGGGGGAGAA 59.304 50.000 0.00 0.00 0.00 2.87
1423 1695 0.695924 TGATCTTTGCGGGGGAGAAA 59.304 50.000 0.00 0.00 0.00 2.52
1424 1696 1.074727 TGATCTTTGCGGGGGAGAAAA 59.925 47.619 0.00 0.00 0.00 2.29
1425 1697 2.167662 GATCTTTGCGGGGGAGAAAAA 58.832 47.619 0.00 0.00 0.00 1.94
1460 1732 5.070313 TCATTACCATGTCTGATCGATTGGA 59.930 40.000 16.55 7.67 33.98 3.53
1508 1782 5.830991 TGTTCTTGCCTGGTTAACTGTATTT 59.169 36.000 5.42 0.00 0.00 1.40
1562 1836 6.149973 TCTGTTGCTTCAACTGAGGATTATTG 59.850 38.462 12.95 0.00 43.60 1.90
1602 1884 6.942576 AGAAACATACAGCTTTGTGGTATTCT 59.057 34.615 1.53 5.47 0.00 2.40
1603 1885 6.743575 AACATACAGCTTTGTGGTATTCTC 57.256 37.500 1.53 0.00 0.00 2.87
1626 1908 3.127030 GGGTTAGCACAAATGTCTACTGC 59.873 47.826 0.00 0.00 0.00 4.40
1655 1937 6.042143 TCAAGCAGAAAAGTTTTCATTGTCC 58.958 36.000 26.06 8.47 0.00 4.02
1696 1978 1.977854 TCCATGTAGGCACAACAGAGT 59.022 47.619 0.00 0.00 38.42 3.24
1731 2013 5.323371 TGAAAGAAAAGGAAACACAGGTG 57.677 39.130 0.00 0.00 0.00 4.00
1734 2016 6.605594 TGAAAGAAAAGGAAACACAGGTGTAT 59.394 34.615 5.36 0.00 44.13 2.29
1757 2041 4.343814 TGAGTAGACTGTTGGACATTGTCA 59.656 41.667 18.09 2.40 33.68 3.58
1873 2157 8.986477 AGTTGTATTTCCAAAATGTAATCTGC 57.014 30.769 0.00 0.00 0.00 4.26
1918 2240 4.637483 ATTCATGCACGGTATCTTTTGG 57.363 40.909 0.00 0.00 0.00 3.28
1925 2247 2.420022 CACGGTATCTTTTGGAGCTTGG 59.580 50.000 0.00 0.00 0.00 3.61
1934 2256 4.042809 TCTTTTGGAGCTTGGGATGACTTA 59.957 41.667 0.00 0.00 0.00 2.24
1936 2258 1.207089 TGGAGCTTGGGATGACTTACG 59.793 52.381 0.00 0.00 0.00 3.18
1945 2267 2.353803 GGGATGACTTACGTGCTTCACT 60.354 50.000 0.00 0.00 31.34 3.41
2042 2364 9.520204 CCACCAAGCAAAACATTAATCTAATAG 57.480 33.333 0.00 0.00 0.00 1.73
2183 2508 8.736244 ACTTACAGTGTAAACAATTTGAACAGT 58.264 29.630 16.26 3.77 0.00 3.55
2190 2515 7.487829 GTGTAAACAATTTGAACAGTGTGACAT 59.512 33.333 2.79 0.00 0.00 3.06
2196 2521 2.916640 TGAACAGTGTGACATTGCAGA 58.083 42.857 8.06 0.00 0.00 4.26
2206 2531 1.065273 CATTGCAGATGAAGGGCGC 59.935 57.895 0.00 0.00 0.00 6.53
2208 2533 0.181114 ATTGCAGATGAAGGGCGCTA 59.819 50.000 7.64 0.00 0.00 4.26
2265 2590 5.339008 TGACCTTGTACATGTATCTGGTC 57.661 43.478 28.25 28.25 41.97 4.02
2399 2724 8.149647 CCATTCTGAGATATACAGCTTTCTTCT 58.850 37.037 4.97 0.00 35.61 2.85
2474 2799 5.531287 CCTAGCCCTGATTTTATGTTACCAC 59.469 44.000 0.00 0.00 0.00 4.16
2501 2826 6.722590 TCCTTCCTCTTGTGTATACTTGTGTA 59.277 38.462 4.17 0.00 0.00 2.90
2655 2992 7.581011 AAAACTGCGACAATTAATTTGGATC 57.419 32.000 0.00 0.00 39.80 3.36
2724 3061 9.744468 GTTGGTCTTGAAAATACTTTTGTATGT 57.256 29.630 0.00 0.00 44.21 2.29
2868 3205 2.229062 CGACACCATCTGCGGATAGTAT 59.771 50.000 7.96 0.00 0.00 2.12
2871 3208 4.149598 ACACCATCTGCGGATAGTATGTA 58.850 43.478 7.96 0.00 0.00 2.29
2872 3209 4.022242 ACACCATCTGCGGATAGTATGTAC 60.022 45.833 7.96 0.00 0.00 2.90
2894 3231 8.201464 TGTACTTCTCAGTTGACTTTGTTCATA 58.799 33.333 0.00 0.00 34.06 2.15
2962 3299 9.653287 TTACTGTCTTCTGTTGTATCAATTAGG 57.347 33.333 0.00 0.00 0.00 2.69
3011 3348 0.886490 AAAGGCTTCGTCTGTGGCAG 60.886 55.000 0.00 0.00 0.00 4.85
3065 3402 5.475564 GGATAACCGGCAATACAAACCATAT 59.524 40.000 0.00 0.00 0.00 1.78
3375 3712 6.119536 TGACTGTAAAACTGAATGGAAGTGT 58.880 36.000 0.00 0.00 0.00 3.55
3399 3736 6.973474 GTGTGTGTGTATAGATGGTAGAGAAC 59.027 42.308 0.00 0.00 0.00 3.01
3402 3739 7.067129 GTGTGTGTATAGATGGTAGAGAACTCA 59.933 40.741 4.64 0.00 0.00 3.41
3421 3758 0.525668 AATCGCATGACTCGTCGGAC 60.526 55.000 0.00 0.00 0.00 4.79
3477 3814 1.595794 GTGTGGGTTGTAACTCGTGTG 59.404 52.381 0.00 0.00 29.87 3.82
3498 3835 1.134367 CATTCAGTGCTGCAATGGAGG 59.866 52.381 27.09 18.67 29.97 4.30
3534 3871 8.491152 CATCCGATGCACTTTATTAACTCTTAG 58.509 37.037 0.00 0.00 0.00 2.18
3536 3873 6.480320 CCGATGCACTTTATTAACTCTTAGCT 59.520 38.462 0.00 0.00 0.00 3.32
3537 3874 7.652105 CCGATGCACTTTATTAACTCTTAGCTA 59.348 37.037 0.00 0.00 0.00 3.32
3712 4051 6.306837 GTCTCTGTATCTCTTGAAAACAGTCG 59.693 42.308 0.00 0.00 39.38 4.18
3732 4071 3.814842 TCGCAATGTCATCAAGAACTTGT 59.185 39.130 13.15 0.48 41.16 3.16
3825 4164 3.474600 GATGATGGTGCTAGCTGTGAAT 58.525 45.455 17.23 2.78 0.00 2.57
3834 4173 1.549243 TAGCTGTGAATGGGCGGTCA 61.549 55.000 0.00 0.00 0.00 4.02
3837 4176 3.124921 GTGAATGGGCGGTCACGG 61.125 66.667 0.00 0.00 41.36 4.94
3929 4268 3.859386 GCTTCCTGTCAAAACAACACAAG 59.141 43.478 0.00 0.00 34.24 3.16
3931 4270 5.708948 CTTCCTGTCAAAACAACACAAGAA 58.291 37.500 0.00 0.00 34.24 2.52
3971 4322 7.907214 ATTTCGAATGGCAATATACTACTCC 57.093 36.000 0.00 0.00 0.00 3.85
3972 4323 5.401531 TCGAATGGCAATATACTACTCCC 57.598 43.478 0.00 0.00 0.00 4.30
3973 4324 5.084519 TCGAATGGCAATATACTACTCCCT 58.915 41.667 0.00 0.00 0.00 4.20
3974 4325 5.185249 TCGAATGGCAATATACTACTCCCTC 59.815 44.000 0.00 0.00 0.00 4.30
3975 4326 5.186021 CGAATGGCAATATACTACTCCCTCT 59.814 44.000 0.00 0.00 0.00 3.69
3976 4327 6.365970 AATGGCAATATACTACTCCCTCTG 57.634 41.667 0.00 0.00 0.00 3.35
3977 4328 4.816126 TGGCAATATACTACTCCCTCTGT 58.184 43.478 0.00 0.00 0.00 3.41
3978 4329 5.960704 TGGCAATATACTACTCCCTCTGTA 58.039 41.667 0.00 0.00 0.00 2.74
3979 4330 6.378745 TGGCAATATACTACTCCCTCTGTAA 58.621 40.000 0.00 0.00 0.00 2.41
3980 4331 6.842280 TGGCAATATACTACTCCCTCTGTAAA 59.158 38.462 0.00 0.00 0.00 2.01
3981 4332 7.153315 GGCAATATACTACTCCCTCTGTAAAC 58.847 42.308 0.00 0.00 0.00 2.01
3982 4333 7.201974 GGCAATATACTACTCCCTCTGTAAACA 60.202 40.741 0.00 0.00 0.00 2.83
3983 4334 7.652507 GCAATATACTACTCCCTCTGTAAACAC 59.347 40.741 0.00 0.00 0.00 3.32
3984 4335 8.692710 CAATATACTACTCCCTCTGTAAACACA 58.307 37.037 0.00 0.00 0.00 3.72
3985 4336 4.868314 ACTACTCCCTCTGTAAACACAC 57.132 45.455 0.00 0.00 0.00 3.82
3986 4337 4.220724 ACTACTCCCTCTGTAAACACACA 58.779 43.478 0.00 0.00 0.00 3.72
3987 4338 4.652421 ACTACTCCCTCTGTAAACACACAA 59.348 41.667 0.00 0.00 0.00 3.33
3988 4339 4.497291 ACTCCCTCTGTAAACACACAAA 57.503 40.909 0.00 0.00 0.00 2.83
3989 4340 5.048846 ACTCCCTCTGTAAACACACAAAT 57.951 39.130 0.00 0.00 0.00 2.32
3990 4341 4.821805 ACTCCCTCTGTAAACACACAAATG 59.178 41.667 0.00 0.00 0.00 2.32
3991 4342 4.787551 TCCCTCTGTAAACACACAAATGT 58.212 39.130 0.00 0.00 40.80 2.71
3992 4343 5.931294 TCCCTCTGTAAACACACAAATGTA 58.069 37.500 0.00 0.00 36.72 2.29
3993 4344 6.358178 TCCCTCTGTAAACACACAAATGTAA 58.642 36.000 0.00 0.00 36.72 2.41
3994 4345 6.485313 TCCCTCTGTAAACACACAAATGTAAG 59.515 38.462 0.00 0.00 36.72 2.34
3995 4346 6.485313 CCCTCTGTAAACACACAAATGTAAGA 59.515 38.462 0.00 0.00 36.72 2.10
3996 4347 7.352739 CCTCTGTAAACACACAAATGTAAGAC 58.647 38.462 0.00 0.00 36.72 3.01
3997 4348 6.939627 TCTGTAAACACACAAATGTAAGACG 58.060 36.000 0.00 0.00 36.72 4.18
3998 4349 6.535865 TCTGTAAACACACAAATGTAAGACGT 59.464 34.615 0.00 0.00 36.72 4.34
3999 4350 7.064847 TCTGTAAACACACAAATGTAAGACGTT 59.935 33.333 0.00 0.00 36.72 3.99
4000 4351 7.528307 TGTAAACACACAAATGTAAGACGTTT 58.472 30.769 0.00 0.00 37.78 3.60
4001 4352 8.021973 TGTAAACACACAAATGTAAGACGTTTT 58.978 29.630 0.00 0.00 35.31 2.43
4002 4353 9.488124 GTAAACACACAAATGTAAGACGTTTTA 57.512 29.630 0.00 0.00 35.31 1.52
4003 4354 8.609478 AAACACACAAATGTAAGACGTTTTAG 57.391 30.769 0.00 0.00 35.31 1.85
4004 4355 6.721321 ACACACAAATGTAAGACGTTTTAGG 58.279 36.000 0.00 0.00 35.31 2.69
4005 4356 6.316890 ACACACAAATGTAAGACGTTTTAGGT 59.683 34.615 0.00 0.00 35.31 3.08
4006 4357 6.849305 CACACAAATGTAAGACGTTTTAGGTC 59.151 38.462 0.00 0.00 35.31 3.85
4007 4358 6.539464 ACACAAATGTAAGACGTTTTAGGTCA 59.461 34.615 0.00 0.00 35.31 4.02
4008 4359 6.849305 CACAAATGTAAGACGTTTTAGGTCAC 59.151 38.462 0.00 0.00 35.31 3.67
4009 4360 6.764560 ACAAATGTAAGACGTTTTAGGTCACT 59.235 34.615 0.00 0.00 35.31 3.41
4010 4361 7.927629 ACAAATGTAAGACGTTTTAGGTCACTA 59.072 33.333 0.00 0.00 35.31 2.74
4011 4362 8.932791 CAAATGTAAGACGTTTTAGGTCACTAT 58.067 33.333 0.00 0.00 35.31 2.12
4014 4365 9.798994 ATGTAAGACGTTTTAGGTCACTATAAG 57.201 33.333 0.00 0.00 35.60 1.73
4015 4366 9.013229 TGTAAGACGTTTTAGGTCACTATAAGA 57.987 33.333 0.00 0.00 35.60 2.10
4016 4367 9.500864 GTAAGACGTTTTAGGTCACTATAAGAG 57.499 37.037 0.00 0.00 35.60 2.85
4017 4368 7.098074 AGACGTTTTAGGTCACTATAAGAGG 57.902 40.000 0.00 0.00 35.60 3.69
4018 4369 6.096564 AGACGTTTTAGGTCACTATAAGAGGG 59.903 42.308 0.00 0.00 35.60 4.30
4019 4370 5.954150 ACGTTTTAGGTCACTATAAGAGGGA 59.046 40.000 0.00 0.00 34.12 4.20
4020 4371 6.096564 ACGTTTTAGGTCACTATAAGAGGGAG 59.903 42.308 0.00 0.00 38.68 4.30
4023 4374 8.412456 GTTTTAGGTCACTATAAGAGGGAGTAC 58.588 40.741 0.00 0.00 38.68 2.73
4026 4377 6.130569 AGGTCACTATAAGAGGGAGTACTTG 58.869 44.000 0.00 0.00 38.68 3.16
4036 4387 2.904434 AGGGAGTACTTGGTTGTAGTGG 59.096 50.000 0.00 0.00 0.00 4.00
4042 4393 2.404559 ACTTGGTTGTAGTGGTCCAGA 58.595 47.619 0.00 0.00 0.00 3.86
4053 4404 0.177836 TGGTCCAGAGTGTGTGTGTG 59.822 55.000 0.00 0.00 0.00 3.82
4055 4406 1.290203 GTCCAGAGTGTGTGTGTGTG 58.710 55.000 0.00 0.00 0.00 3.82
4059 4410 2.201732 CAGAGTGTGTGTGTGTGTACC 58.798 52.381 0.00 0.00 0.00 3.34
4062 4413 3.702548 AGAGTGTGTGTGTGTGTACCTTA 59.297 43.478 0.00 0.00 0.00 2.69
4067 4418 2.224185 TGTGTGTGTGTACCTTAGCCAG 60.224 50.000 0.00 0.00 0.00 4.85
4071 4422 1.207329 GTGTGTACCTTAGCCAGAGGG 59.793 57.143 3.06 0.00 38.65 4.30
4125 4476 4.699257 AGATTTAGCCTGAAACTCTTGCTG 59.301 41.667 0.00 0.00 33.63 4.41
4132 4483 1.405105 TGAAACTCTTGCTGTTGCCAC 59.595 47.619 0.00 0.00 38.71 5.01
4173 4524 3.414700 GTCAGAACACCGCTGCCG 61.415 66.667 0.00 0.00 33.45 5.69
4221 4572 1.260538 TGCAGTTGTTTGGGTGGCAA 61.261 50.000 0.00 0.00 0.00 4.52
4236 4587 1.202915 TGGCAAACCTCAGCAAGATCA 60.203 47.619 0.00 0.00 36.63 2.92
4270 4621 2.679837 CAAAGCGTGCAGACTCCATTAT 59.320 45.455 0.00 0.00 0.00 1.28
4278 4629 5.482908 GTGCAGACTCCATTATACCATAGG 58.517 45.833 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 3.262405 ACACCGGCTACTCAAAATAGGAA 59.738 43.478 0.00 0.00 0.00 3.36
146 148 8.862074 CACATCATTAAGAAATTTCATTTGCGA 58.138 29.630 19.99 9.27 31.47 5.10
169 171 6.353323 TGGACATCTGTAAAGAGAAAACACA 58.647 36.000 0.00 0.00 0.00 3.72
233 235 1.105167 AAGGTGACGTGTCAGACCGA 61.105 55.000 15.69 0.00 40.75 4.69
236 238 1.603172 CCTCAAGGTGACGTGTCAGAC 60.603 57.143 2.31 0.00 40.75 3.51
295 297 0.248215 CAATCCTTTTGCTAGGCGCG 60.248 55.000 0.00 0.00 43.27 6.86
298 300 2.952310 CCCTACAATCCTTTTGCTAGGC 59.048 50.000 0.00 0.00 35.15 3.93
412 414 3.825908 TTTTTGGGAGGAGCCAGTTAT 57.174 42.857 0.00 0.00 38.95 1.89
557 560 5.560966 AATTTGTACAATAAGTGCTCCCG 57.439 39.130 9.56 0.00 33.54 5.14
643 650 4.149019 TGGGTGCCAGGCCACAAA 62.149 61.111 9.64 0.00 37.46 2.83
672 680 2.520536 GCATCAGGGGCGGACCTAT 61.521 63.158 0.00 0.00 39.34 2.57
713 721 2.291465 CTGTATGCGGGTTCATCATTGG 59.709 50.000 0.00 0.00 0.00 3.16
714 722 2.945008 ACTGTATGCGGGTTCATCATTG 59.055 45.455 0.00 0.00 0.00 2.82
726 734 4.457810 CTCTTTTTGTGTGACTGTATGCG 58.542 43.478 0.00 0.00 0.00 4.73
745 754 3.591527 TCTCAACTCCTCTCTCTTCCTCT 59.408 47.826 0.00 0.00 0.00 3.69
826 836 5.568620 ACATGTTAAACTCAGACCCTCTT 57.431 39.130 0.00 0.00 0.00 2.85
827 837 5.568620 AACATGTTAAACTCAGACCCTCT 57.431 39.130 9.97 0.00 0.00 3.69
854 864 1.580059 AAGGAGTGGGCCGAATTCTA 58.420 50.000 0.00 0.00 0.00 2.10
900 913 0.923358 TTACCGGGCCTTCCATGATT 59.077 50.000 6.32 0.00 34.36 2.57
934 947 1.348036 ACTTTTAGAGTGCGAGGCCTT 59.652 47.619 6.77 0.00 37.17 4.35
958 972 0.459899 GGGAATGCCCGATTGGTTTC 59.540 55.000 0.00 0.00 46.48 2.78
1089 1103 4.150454 CTCTCCGCCTCCTCCCCT 62.150 72.222 0.00 0.00 0.00 4.79
1100 1114 2.279517 GGTACGCCATGCTCTCCG 60.280 66.667 0.00 0.00 34.09 4.63
1140 1154 1.154093 CTTCTTACGCGCGACAGGA 60.154 57.895 39.36 24.93 0.00 3.86
1152 1166 6.156949 AGTTGGAGCTGACAATATCCTTCTTA 59.843 38.462 0.00 0.00 32.79 2.10
1282 1296 3.126225 AGAGGTCGACGAGGACGC 61.126 66.667 9.92 0.00 43.96 5.19
1316 1330 1.364678 TGGGGAGTATGAGAGGGAACA 59.635 52.381 0.00 0.00 0.00 3.18
1317 1331 1.763545 GTGGGGAGTATGAGAGGGAAC 59.236 57.143 0.00 0.00 0.00 3.62
1341 1355 1.226262 CGACCTATTTGGGTGGGGG 59.774 63.158 0.00 0.00 40.06 5.40
1342 1356 1.453197 GCGACCTATTTGGGTGGGG 60.453 63.158 0.00 0.00 40.06 4.96
1343 1357 1.817941 CGCGACCTATTTGGGTGGG 60.818 63.158 0.00 0.00 40.06 4.61
1344 1358 1.817941 CCGCGACCTATTTGGGTGG 60.818 63.158 8.23 0.00 40.06 4.61
1345 1359 2.469516 GCCGCGACCTATTTGGGTG 61.470 63.158 8.23 0.00 40.06 4.61
1346 1360 2.124860 GCCGCGACCTATTTGGGT 60.125 61.111 8.23 0.00 43.07 4.51
1347 1361 1.029947 AAAGCCGCGACCTATTTGGG 61.030 55.000 8.23 0.00 41.11 4.12
1348 1362 0.377203 GAAAGCCGCGACCTATTTGG 59.623 55.000 8.23 0.00 42.93 3.28
1361 1375 2.159599 CGAGCATGAACAAGAGAAAGCC 60.160 50.000 0.00 0.00 0.00 4.35
1402 1674 0.253044 TCTCCCCCGCAAAGATCAAG 59.747 55.000 0.00 0.00 0.00 3.02
1403 1675 0.695924 TTCTCCCCCGCAAAGATCAA 59.304 50.000 0.00 0.00 0.00 2.57
1404 1676 0.695924 TTTCTCCCCCGCAAAGATCA 59.304 50.000 0.00 0.00 0.00 2.92
1405 1677 1.834188 TTTTCTCCCCCGCAAAGATC 58.166 50.000 0.00 0.00 0.00 2.75
1406 1678 2.302587 TTTTTCTCCCCCGCAAAGAT 57.697 45.000 0.00 0.00 0.00 2.40
1407 1679 3.831651 TTTTTCTCCCCCGCAAAGA 57.168 47.368 0.00 0.00 0.00 2.52
1444 1716 9.597170 CAGAATATAATCCAATCGATCAGACAT 57.403 33.333 0.00 0.00 0.00 3.06
1525 1799 9.726438 AGTTGAAGCAACAGATAGTTATTACTT 57.274 29.630 12.25 0.00 45.66 2.24
1562 1836 8.556213 TGTATGTTTCTACCATGTTTAGAACC 57.444 34.615 11.70 7.42 35.69 3.62
1602 1884 2.851263 AGACATTTGTGCTAACCCGA 57.149 45.000 0.00 0.00 0.00 5.14
1603 1885 3.370978 CAGTAGACATTTGTGCTAACCCG 59.629 47.826 0.00 0.00 0.00 5.28
1626 1908 8.697067 CAATGAAAACTTTTCTGCTTGATACTG 58.303 33.333 14.05 0.00 0.00 2.74
1638 1920 6.128729 CGCAATTGGACAATGAAAACTTTTC 58.871 36.000 7.72 7.24 0.00 2.29
1643 1925 3.389221 ACCGCAATTGGACAATGAAAAC 58.611 40.909 7.72 0.00 0.00 2.43
1644 1926 3.742433 ACCGCAATTGGACAATGAAAA 57.258 38.095 7.72 0.00 0.00 2.29
1655 1937 1.596954 GCAATACGCCTACCGCAATTG 60.597 52.381 0.00 0.00 42.17 2.32
1731 2013 6.398918 ACAATGTCCAACAGTCTACTCATAC 58.601 40.000 0.00 0.00 0.00 2.39
1734 2016 4.343814 TGACAATGTCCAACAGTCTACTCA 59.656 41.667 11.24 0.00 28.33 3.41
1757 2041 9.719433 TTAAGTACATCCTACTAACTTGGGTAT 57.281 33.333 0.00 0.00 32.85 2.73
1869 2153 7.780271 TGTCTCTCTTAATATAGTCCTTGCAGA 59.220 37.037 0.00 0.00 0.00 4.26
1886 2170 4.141846 ACCGTGCATGAATATGTCTCTCTT 60.142 41.667 7.72 0.00 36.65 2.85
1899 2221 3.270027 CTCCAAAAGATACCGTGCATGA 58.730 45.455 7.72 0.00 0.00 3.07
1945 2267 4.109050 GAGTTGCACAAATTTTTGACGGA 58.891 39.130 8.51 0.00 40.55 4.69
1980 2302 1.414181 CATCCCGAGGTGCTTCTATGT 59.586 52.381 0.00 0.00 0.00 2.29
2042 2364 8.125448 GGCTCTATGAAAACATGATCTTTGTAC 58.875 37.037 0.00 0.00 0.00 2.90
2088 2410 6.934048 TGGAACAATCATATAACATTGCGA 57.066 33.333 6.84 0.00 33.92 5.10
2163 2488 7.027161 GTCACACTGTTCAAATTGTTTACACT 58.973 34.615 0.00 0.00 0.00 3.55
2183 2508 2.439409 CCCTTCATCTGCAATGTCACA 58.561 47.619 8.19 0.00 0.00 3.58
2190 2515 0.181114 ATAGCGCCCTTCATCTGCAA 59.819 50.000 2.29 0.00 0.00 4.08
2196 2521 0.395586 TTTGCCATAGCGCCCTTCAT 60.396 50.000 2.29 0.00 44.31 2.57
2265 2590 9.868277 ACTGACTTTATGATAAGAGTTCAGAAG 57.132 33.333 15.37 0.00 33.44 2.85
2310 2635 6.947464 ACAACTGACTAACCTTATAGCACAT 58.053 36.000 0.00 0.00 0.00 3.21
2399 2724 8.144478 CCAAACCGATCTTCTAAATGATCTCTA 58.856 37.037 0.00 0.00 37.51 2.43
2400 2725 6.989169 CCAAACCGATCTTCTAAATGATCTCT 59.011 38.462 0.00 0.00 37.51 3.10
2474 2799 6.536582 CACAAGTATACACAAGAGGAAGGATG 59.463 42.308 5.50 0.00 0.00 3.51
2501 2826 7.894364 TCAAAGATAGTGGAAGTAACTAGGACT 59.106 37.037 0.00 0.00 33.78 3.85
2568 2901 8.429641 GGATCAGAGGGAGTAACATATTTTGTA 58.570 37.037 0.00 0.00 37.68 2.41
2589 2922 7.624360 AAGCTACGACAATTAATTTGGATCA 57.376 32.000 0.00 0.00 39.80 2.92
2590 2923 9.651718 CTAAAGCTACGACAATTAATTTGGATC 57.348 33.333 0.00 0.00 39.80 3.36
2630 2967 7.483375 CGATCCAAATTAATTGTCGCAGTTTTA 59.517 33.333 0.39 0.00 37.32 1.52
2655 2992 3.439129 GGAAACAATTGTTACTCCCTCCG 59.561 47.826 23.53 0.00 37.25 4.63
2750 3087 7.607991 GTGGATCTATGGAATAATGGATTTCGT 59.392 37.037 0.00 0.00 28.81 3.85
2842 3179 2.528743 CGCAGATGGTGTCGATGCC 61.529 63.158 0.00 0.00 33.32 4.40
2848 3185 3.005897 ACATACTATCCGCAGATGGTGTC 59.994 47.826 9.04 0.00 43.41 3.67
2868 3205 6.403049 TGAACAAAGTCAACTGAGAAGTACA 58.597 36.000 0.00 0.00 0.00 2.90
2871 3208 6.483640 GGTATGAACAAAGTCAACTGAGAAGT 59.516 38.462 0.00 0.00 0.00 3.01
2872 3209 6.708054 AGGTATGAACAAAGTCAACTGAGAAG 59.292 38.462 0.00 0.00 0.00 2.85
2894 3231 6.435292 AAAGGACTACAATACAGAACAGGT 57.565 37.500 0.00 0.00 0.00 4.00
3011 3348 0.540597 AAGGGCTGGCAAAGAAGACC 60.541 55.000 2.88 0.00 42.53 3.85
3375 3712 6.890268 AGTTCTCTACCATCTATACACACACA 59.110 38.462 0.00 0.00 0.00 3.72
3399 3736 0.842613 CGACGAGTCATGCGATTGAG 59.157 55.000 4.02 0.00 0.00 3.02
3402 3739 0.525668 GTCCGACGAGTCATGCGATT 60.526 55.000 0.00 0.00 0.00 3.34
3498 3835 1.202687 TGCATCGGATGTCCAGATTCC 60.203 52.381 18.54 0.38 35.14 3.01
3712 4051 4.232221 CCACAAGTTCTTGATGACATTGC 58.768 43.478 17.75 0.00 0.00 3.56
3765 4104 2.562738 TCAGCTGAAGGAGAACATCGAA 59.437 45.455 15.67 0.00 0.00 3.71
3872 4211 0.371645 CAAGGTCGCGAAGAAGCATC 59.628 55.000 12.06 0.00 36.85 3.91
3906 4245 2.822561 TGTGTTGTTTTGACAGGAAGCA 59.177 40.909 0.00 0.00 0.00 3.91
3951 4302 5.186021 AGAGGGAGTAGTATATTGCCATTCG 59.814 44.000 0.00 0.00 41.33 3.34
3957 4308 7.652507 GTGTTTACAGAGGGAGTAGTATATTGC 59.347 40.741 0.00 0.00 0.00 3.56
3967 4318 4.497291 TTTGTGTGTTTACAGAGGGAGT 57.503 40.909 0.00 0.00 37.52 3.85
3968 4319 4.821805 ACATTTGTGTGTTTACAGAGGGAG 59.178 41.667 0.00 0.00 37.52 4.30
3969 4320 4.787551 ACATTTGTGTGTTTACAGAGGGA 58.212 39.130 0.00 0.00 37.52 4.20
3970 4321 6.485313 TCTTACATTTGTGTGTTTACAGAGGG 59.515 38.462 0.00 0.00 37.52 4.30
3971 4322 7.352739 GTCTTACATTTGTGTGTTTACAGAGG 58.647 38.462 0.00 0.00 37.52 3.69
3972 4323 7.063456 CGTCTTACATTTGTGTGTTTACAGAG 58.937 38.462 0.00 0.00 37.52 3.35
3973 4324 6.535865 ACGTCTTACATTTGTGTGTTTACAGA 59.464 34.615 0.00 0.00 37.52 3.41
3974 4325 6.711579 ACGTCTTACATTTGTGTGTTTACAG 58.288 36.000 0.00 0.00 37.52 2.74
3975 4326 6.665474 ACGTCTTACATTTGTGTGTTTACA 57.335 33.333 0.00 0.00 33.62 2.41
3976 4327 7.958112 AAACGTCTTACATTTGTGTGTTTAC 57.042 32.000 0.00 0.00 33.62 2.01
3977 4328 9.705471 CTAAAACGTCTTACATTTGTGTGTTTA 57.295 29.630 0.00 0.00 33.62 2.01
3978 4329 7.698970 CCTAAAACGTCTTACATTTGTGTGTTT 59.301 33.333 0.00 0.00 33.62 2.83
3979 4330 7.148205 ACCTAAAACGTCTTACATTTGTGTGTT 60.148 33.333 0.00 0.00 33.62 3.32
3980 4331 6.316890 ACCTAAAACGTCTTACATTTGTGTGT 59.683 34.615 0.00 0.00 36.13 3.72
3981 4332 6.721321 ACCTAAAACGTCTTACATTTGTGTG 58.279 36.000 0.00 0.00 0.00 3.82
3982 4333 6.539464 TGACCTAAAACGTCTTACATTTGTGT 59.461 34.615 0.00 0.00 0.00 3.72
3983 4334 6.849305 GTGACCTAAAACGTCTTACATTTGTG 59.151 38.462 0.00 0.00 0.00 3.33
3984 4335 6.764560 AGTGACCTAAAACGTCTTACATTTGT 59.235 34.615 0.00 0.00 0.00 2.83
3985 4336 7.186021 AGTGACCTAAAACGTCTTACATTTG 57.814 36.000 0.00 0.00 0.00 2.32
3988 4339 9.798994 CTTATAGTGACCTAAAACGTCTTACAT 57.201 33.333 0.00 0.00 0.00 2.29
3989 4340 9.013229 TCTTATAGTGACCTAAAACGTCTTACA 57.987 33.333 0.00 0.00 0.00 2.41
3990 4341 9.500864 CTCTTATAGTGACCTAAAACGTCTTAC 57.499 37.037 0.00 0.00 0.00 2.34
3991 4342 8.680903 CCTCTTATAGTGACCTAAAACGTCTTA 58.319 37.037 0.00 0.00 0.00 2.10
3992 4343 7.363617 CCCTCTTATAGTGACCTAAAACGTCTT 60.364 40.741 0.00 0.00 0.00 3.01
3993 4344 6.096564 CCCTCTTATAGTGACCTAAAACGTCT 59.903 42.308 0.00 0.00 0.00 4.18
3994 4345 6.096001 TCCCTCTTATAGTGACCTAAAACGTC 59.904 42.308 0.00 0.00 0.00 4.34
3995 4346 5.954150 TCCCTCTTATAGTGACCTAAAACGT 59.046 40.000 0.00 0.00 0.00 3.99
3996 4347 6.096564 ACTCCCTCTTATAGTGACCTAAAACG 59.903 42.308 0.00 0.00 0.00 3.60
3997 4348 7.421087 ACTCCCTCTTATAGTGACCTAAAAC 57.579 40.000 0.00 0.00 0.00 2.43
3998 4349 8.342270 AGTACTCCCTCTTATAGTGACCTAAAA 58.658 37.037 0.00 0.00 0.00 1.52
3999 4350 7.880623 AGTACTCCCTCTTATAGTGACCTAAA 58.119 38.462 0.00 0.00 0.00 1.85
4000 4351 7.463054 AGTACTCCCTCTTATAGTGACCTAA 57.537 40.000 0.00 0.00 0.00 2.69
4001 4352 7.288560 CAAGTACTCCCTCTTATAGTGACCTA 58.711 42.308 0.00 0.00 0.00 3.08
4002 4353 5.998128 AGTACTCCCTCTTATAGTGACCT 57.002 43.478 0.00 0.00 0.00 3.85
4003 4354 5.302313 CCAAGTACTCCCTCTTATAGTGACC 59.698 48.000 0.00 0.00 0.00 4.02
4004 4355 5.892686 ACCAAGTACTCCCTCTTATAGTGAC 59.107 44.000 0.00 0.00 0.00 3.67
4005 4356 6.088541 ACCAAGTACTCCCTCTTATAGTGA 57.911 41.667 0.00 0.00 0.00 3.41
4006 4357 6.154706 ACAACCAAGTACTCCCTCTTATAGTG 59.845 42.308 0.00 0.00 0.00 2.74
4007 4358 6.262207 ACAACCAAGTACTCCCTCTTATAGT 58.738 40.000 0.00 0.00 0.00 2.12
4008 4359 6.793505 ACAACCAAGTACTCCCTCTTATAG 57.206 41.667 0.00 0.00 0.00 1.31
4009 4360 7.341256 CACTACAACCAAGTACTCCCTCTTATA 59.659 40.741 0.00 0.00 0.00 0.98
4010 4361 6.154706 CACTACAACCAAGTACTCCCTCTTAT 59.845 42.308 0.00 0.00 0.00 1.73
4011 4362 5.479375 CACTACAACCAAGTACTCCCTCTTA 59.521 44.000 0.00 0.00 0.00 2.10
4012 4363 4.283722 CACTACAACCAAGTACTCCCTCTT 59.716 45.833 0.00 0.00 0.00 2.85
4013 4364 3.833070 CACTACAACCAAGTACTCCCTCT 59.167 47.826 0.00 0.00 0.00 3.69
4014 4365 3.056035 CCACTACAACCAAGTACTCCCTC 60.056 52.174 0.00 0.00 0.00 4.30
4015 4366 2.904434 CCACTACAACCAAGTACTCCCT 59.096 50.000 0.00 0.00 0.00 4.20
4016 4367 2.636403 ACCACTACAACCAAGTACTCCC 59.364 50.000 0.00 0.00 0.00 4.30
4017 4368 3.306571 GGACCACTACAACCAAGTACTCC 60.307 52.174 0.00 0.00 0.00 3.85
4018 4369 3.322828 TGGACCACTACAACCAAGTACTC 59.677 47.826 0.00 0.00 0.00 2.59
4019 4370 3.311091 TGGACCACTACAACCAAGTACT 58.689 45.455 0.00 0.00 0.00 2.73
4020 4371 3.322828 TCTGGACCACTACAACCAAGTAC 59.677 47.826 0.00 0.00 31.85 2.73
4023 4374 2.368875 ACTCTGGACCACTACAACCAAG 59.631 50.000 0.00 0.00 31.85 3.61
4026 4377 1.692519 ACACTCTGGACCACTACAACC 59.307 52.381 0.00 0.00 0.00 3.77
4036 4387 1.290203 CACACACACACACTCTGGAC 58.710 55.000 0.00 0.00 0.00 4.02
4042 4393 3.740141 GCTAAGGTACACACACACACACT 60.740 47.826 0.00 0.00 0.00 3.55
4053 4404 0.831307 CCCCTCTGGCTAAGGTACAC 59.169 60.000 0.00 0.00 31.51 2.90
4125 4476 1.945394 CTGGATGATAGCTGTGGCAAC 59.055 52.381 0.00 0.00 41.70 4.17
4132 4483 5.167121 CGGAAAGTATCTGGATGATAGCTG 58.833 45.833 0.00 0.00 38.23 4.24
4173 4524 3.597728 CTCGCCTACTCCCCGCTC 61.598 72.222 0.00 0.00 0.00 5.03
4199 4550 0.534412 CCACCCAAACAACTGCAACA 59.466 50.000 0.00 0.00 0.00 3.33
4221 4572 2.157738 GCAGTTGATCTTGCTGAGGTT 58.842 47.619 13.29 0.00 32.39 3.50
4224 4575 1.392853 GTCGCAGTTGATCTTGCTGAG 59.607 52.381 13.29 10.76 32.39 3.35
4236 4587 1.135517 ACGCTTTGTTTTGTCGCAGTT 60.136 42.857 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.