Multiple sequence alignment - TraesCS4A01G234800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G234800 chr4A 100.000 7376 0 0 1 7376 543747036 543739661 0.000000e+00 13622
1 TraesCS4A01G234800 chr4A 89.062 128 8 5 4830 4957 221406404 221406283 3.560000e-33 154
2 TraesCS4A01G234800 chr4A 89.683 126 5 6 4832 4957 452155679 452155562 3.560000e-33 154
3 TraesCS4A01G234800 chr4D 93.479 2653 135 18 757 3391 53231549 53234181 0.000000e+00 3906
4 TraesCS4A01G234800 chr4D 91.743 1635 90 22 4956 6569 53235789 53237399 0.000000e+00 2230
5 TraesCS4A01G234800 chr4D 95.778 829 26 3 4041 4862 53234964 53235790 0.000000e+00 1328
6 TraesCS4A01G234800 chr4D 93.151 657 33 4 6719 7375 53237546 53238190 0.000000e+00 953
7 TraesCS4A01G234800 chr4D 95.734 586 21 3 3407 3991 53234389 53234971 0.000000e+00 941
8 TraesCS4A01G234800 chr4D 90.854 164 13 2 606 768 53230165 53230327 1.250000e-52 219
9 TraesCS4A01G234800 chr4D 85.646 209 27 3 1 207 88092133 88092340 4.480000e-52 217
10 TraesCS4A01G234800 chr4B 91.410 1723 101 20 5693 7375 78020930 78022645 0.000000e+00 2318
11 TraesCS4A01G234800 chr4B 92.706 1563 95 11 715 2275 78015504 78017049 0.000000e+00 2237
12 TraesCS4A01G234800 chr4B 91.491 1469 97 17 3407 4862 78018427 78019880 0.000000e+00 1995
13 TraesCS4A01G234800 chr4B 94.467 741 27 4 4956 5683 78019879 78020618 0.000000e+00 1129
14 TraesCS4A01G234800 chr4B 91.085 673 45 10 2745 3407 78017576 78018243 0.000000e+00 896
15 TraesCS4A01G234800 chr4B 93.860 456 24 1 2307 2758 78017054 78017509 0.000000e+00 684
16 TraesCS4A01G234800 chr4B 90.263 380 35 2 1352 1730 603005964 603006342 5.140000e-136 496
17 TraesCS4A01G234800 chr1A 90.879 603 35 11 3 605 29152882 29152300 0.000000e+00 791
18 TraesCS4A01G234800 chr1A 82.160 213 25 4 7170 7375 180408707 180408913 3.540000e-38 171
19 TraesCS4A01G234800 chr1A 94.444 108 4 2 4852 4958 202096809 202096703 1.650000e-36 165
20 TraesCS4A01G234800 chr5A 89.583 624 36 9 777 1393 6166912 6167513 0.000000e+00 765
21 TraesCS4A01G234800 chr5A 87.413 143 14 4 1423 1565 6167509 6167647 2.130000e-35 161
22 TraesCS4A01G234800 chr2A 86.058 624 30 16 777 1393 38314820 38315393 1.050000e-172 617
23 TraesCS4A01G234800 chr2A 95.370 108 5 0 4861 4968 14303594 14303487 9.840000e-39 172
24 TraesCS4A01G234800 chr2A 87.413 143 14 4 1423 1565 38315389 38315527 2.130000e-35 161
25 TraesCS4A01G234800 chr3B 91.316 380 31 2 1352 1730 764840038 764839660 1.100000e-142 518
26 TraesCS4A01G234800 chr7B 89.737 380 37 2 1352 1730 559707625 559707247 1.110000e-132 484
27 TraesCS4A01G234800 chr7B 84.127 189 29 1 1 188 57266761 57266949 1.630000e-41 182
28 TraesCS4A01G234800 chr7B 81.579 190 33 2 1 188 291939312 291939501 9.910000e-34 156
29 TraesCS4A01G234800 chr6B 89.737 380 36 3 1352 1730 693624169 693624546 4.000000e-132 483
30 TraesCS4A01G234800 chr6B 95.283 106 5 0 4856 4961 95757263 95757368 1.270000e-37 169
31 TraesCS4A01G234800 chr1B 88.947 380 39 3 1352 1730 499732874 499732497 4.030000e-127 466
32 TraesCS4A01G234800 chr3A 92.727 275 19 1 1 275 586576828 586577101 5.360000e-106 396
33 TraesCS4A01G234800 chr3A 85.813 289 22 9 308 596 586577098 586577367 9.360000e-74 289
34 TraesCS4A01G234800 chr3D 86.124 209 26 3 1 207 325975470 325975263 9.630000e-54 222
35 TraesCS4A01G234800 chr2B 85.577 208 28 2 1 207 254283642 254283848 4.480000e-52 217
36 TraesCS4A01G234800 chr2B 97.059 102 3 0 4860 4961 629108630 629108529 9.840000e-39 172
37 TraesCS4A01G234800 chr5B 84.211 190 28 2 1 188 643441693 643441882 4.550000e-42 183
38 TraesCS4A01G234800 chr7A 97.115 104 3 0 4861 4964 629780117 629780014 7.610000e-40 176
39 TraesCS4A01G234800 chr7D 97.087 103 2 1 4856 4957 407716528 407716630 9.840000e-39 172
40 TraesCS4A01G234800 chr2D 95.192 104 4 1 4856 4958 468096948 468096845 5.920000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G234800 chr4A 543739661 543747036 7375 True 13622.000000 13622 100.000000 1 7376 1 chr4A.!!$R3 7375
1 TraesCS4A01G234800 chr4D 53230165 53238190 8025 False 1596.166667 3906 93.456500 606 7375 6 chr4D.!!$F2 6769
2 TraesCS4A01G234800 chr4B 78015504 78022645 7141 False 1543.166667 2318 92.503167 715 7375 6 chr4B.!!$F2 6660
3 TraesCS4A01G234800 chr1A 29152300 29152882 582 True 791.000000 791 90.879000 3 605 1 chr1A.!!$R1 602
4 TraesCS4A01G234800 chr5A 6166912 6167647 735 False 463.000000 765 88.498000 777 1565 2 chr5A.!!$F1 788
5 TraesCS4A01G234800 chr2A 38314820 38315527 707 False 389.000000 617 86.735500 777 1565 2 chr2A.!!$F1 788
6 TraesCS4A01G234800 chr3A 586576828 586577367 539 False 342.500000 396 89.270000 1 596 2 chr3A.!!$F1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
551 588 0.179076 ATCTGCGTGGATCGAATGCA 60.179 50.000 11.98 11.98 42.86 3.96 F
1147 2440 0.034477 CCGGTAGGGTTTGAGGCATT 60.034 55.000 0.00 0.00 0.00 3.56 F
1466 2759 0.663688 ACCGATCTGTACTGCGCTAG 59.336 55.000 9.73 7.16 0.00 3.42 F
2784 4162 0.520404 CTTGCTGCTCACATCGCTTT 59.480 50.000 0.00 0.00 0.00 3.51 F
3540 5119 0.322008 CTGAAGGCTCAACAGGTCCC 60.322 60.000 7.95 0.00 0.00 4.46 F
3780 5359 0.667487 TGCGAGCGAACTTTCTCTGG 60.667 55.000 0.00 0.00 0.00 3.86 F
3913 5493 1.839994 CCATCACATACCCAGACACCT 59.160 52.381 0.00 0.00 0.00 4.00 F
4877 6476 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28 F
5675 7287 0.034756 TGCAGCCAAGAGAAAGCGTA 59.965 50.000 0.00 0.00 0.00 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2228 3522 0.954452 GCCAAGCCCATTTCGGATAG 59.046 55.000 0.00 0.0 36.56 2.08 R
2614 3908 0.596083 CGCCTGTAATGCCTCTCTCG 60.596 60.000 0.00 0.0 0.00 4.04 R
3463 5042 1.140452 CTCCTGGCATGTACTGATGCT 59.860 52.381 15.46 0.0 46.74 3.79 R
3715 5294 0.322008 CAGGAGTTTCTGTGCCTCCC 60.322 60.000 0.00 0.0 44.85 4.30 R
4949 6548 0.035343 GTTCCAGCCAACTACTCCCC 60.035 60.000 0.00 0.0 0.00 4.81 R
5252 6861 0.035881 CTTCCCTGAGCAGCAAGACA 59.964 55.000 0.00 0.0 0.00 3.41 R
5253 6862 0.036022 ACTTCCCTGAGCAGCAAGAC 59.964 55.000 11.95 0.0 0.00 3.01 R
6258 8176 0.384309 TAGTAGAGCATGGCCGTTCG 59.616 55.000 0.00 0.0 0.00 3.95 R
6552 8499 0.704664 ACCCCTGGAACTCCATTTCC 59.295 55.000 0.00 0.0 46.46 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 118 3.529533 CTTTTTGTTGTGGCAATGACCA 58.470 40.909 0.00 0.00 37.38 4.02
134 135 0.742281 CCAGTTCCAGCATCTGTCGG 60.742 60.000 0.00 0.00 0.00 4.79
271 272 2.105128 CCGCCTGGAGCTCGTAAG 59.895 66.667 7.83 5.21 40.39 2.34
280 281 2.824489 GCTCGTAAGCCTTGGCCC 60.824 66.667 8.17 0.00 43.10 5.80
281 282 2.124695 CTCGTAAGCCTTGGCCCC 60.125 66.667 8.17 0.00 37.18 5.80
282 283 3.699134 CTCGTAAGCCTTGGCCCCC 62.699 68.421 8.17 0.00 37.18 5.40
283 284 3.728373 CGTAAGCCTTGGCCCCCT 61.728 66.667 8.17 0.00 0.00 4.79
284 285 2.372074 CGTAAGCCTTGGCCCCCTA 61.372 63.158 8.17 0.00 0.00 3.53
285 286 1.532238 GTAAGCCTTGGCCCCCTAG 59.468 63.158 8.17 0.00 0.00 3.02
286 287 2.383601 TAAGCCTTGGCCCCCTAGC 61.384 63.158 8.17 0.00 0.00 3.42
294 295 4.182433 GCCCCCTAGCCTGTGAGC 62.182 72.222 0.00 0.00 0.00 4.26
296 297 2.439104 CCCCCTAGCCTGTGAGCTC 61.439 68.421 6.82 6.82 43.67 4.09
297 298 1.687146 CCCCTAGCCTGTGAGCTCA 60.687 63.158 13.74 13.74 43.67 4.26
298 299 1.053264 CCCCTAGCCTGTGAGCTCAT 61.053 60.000 21.47 5.78 43.67 2.90
299 300 1.709578 CCCTAGCCTGTGAGCTCATA 58.290 55.000 21.47 16.96 43.67 2.15
300 301 1.617850 CCCTAGCCTGTGAGCTCATAG 59.382 57.143 28.30 28.30 43.67 2.23
304 305 2.215191 CCTGTGAGCTCATAGGCCA 58.785 57.895 37.17 21.75 45.91 5.36
305 306 0.763652 CCTGTGAGCTCATAGGCCAT 59.236 55.000 37.17 0.00 45.91 4.40
306 307 1.542767 CCTGTGAGCTCATAGGCCATG 60.543 57.143 37.17 19.48 45.91 3.66
443 480 5.394224 AGAAAGTAACGAGAGGAAGAAGG 57.606 43.478 0.00 0.00 0.00 3.46
510 547 3.648545 GGCCCAGGAGATTAGTCAACTAT 59.351 47.826 0.00 0.00 0.00 2.12
548 585 1.000283 GAGGATCTGCGTGGATCGAAT 60.000 52.381 11.51 3.48 41.99 3.34
551 588 0.179076 ATCTGCGTGGATCGAATGCA 60.179 50.000 11.98 11.98 42.86 3.96
568 605 4.002506 ATGCTGTGTGACCGGCGA 62.003 61.111 9.30 0.00 0.00 5.54
597 634 3.297904 GGCATGCCGTTCCCAAAT 58.702 55.556 23.48 0.00 0.00 2.32
685 722 1.734477 CTTCGGAGGTGTGACAGCG 60.734 63.158 9.30 0.00 36.92 5.18
702 739 2.048127 GTTTGTCCGCGAGCTCCT 60.048 61.111 8.23 0.00 0.00 3.69
704 741 2.276116 TTTGTCCGCGAGCTCCTCT 61.276 57.895 8.23 0.00 0.00 3.69
707 744 2.515057 TCCGCGAGCTCCTCTCTC 60.515 66.667 8.23 0.00 39.70 3.20
713 750 3.137637 GAGCTCCTCTCTCCAGCGC 62.138 68.421 0.87 0.00 38.78 5.92
882 2154 3.077556 CCCTCACCGTCCCTCCTG 61.078 72.222 0.00 0.00 0.00 3.86
891 2163 1.066358 CCGTCCCTCCTGTCCTAAAAC 60.066 57.143 0.00 0.00 0.00 2.43
917 2189 2.382023 TAATCCCGGGCGGAGAGGAT 62.382 60.000 18.49 0.00 46.60 3.24
945 2238 2.009888 CGCGCCTCTCCATTTCTTC 58.990 57.895 0.00 0.00 0.00 2.87
950 2243 2.482839 CGCCTCTCCATTTCTTCCTCTC 60.483 54.545 0.00 0.00 0.00 3.20
1005 2298 3.000693 TAGCACCGCAGCGATGTCA 62.001 57.895 18.75 0.00 40.15 3.58
1101 2394 4.379652 CCAAAGCTGGTAAAACTGCATTT 58.620 39.130 0.00 0.00 38.00 2.32
1143 2436 2.125269 CGCCGGTAGGGTTTGAGG 60.125 66.667 1.90 0.00 38.44 3.86
1144 2437 2.437895 GCCGGTAGGGTTTGAGGC 60.438 66.667 1.90 0.00 38.44 4.70
1145 2438 3.074281 CCGGTAGGGTTTGAGGCA 58.926 61.111 0.00 0.00 0.00 4.75
1147 2440 0.034477 CCGGTAGGGTTTGAGGCATT 60.034 55.000 0.00 0.00 0.00 3.56
1148 2441 1.379527 CGGTAGGGTTTGAGGCATTC 58.620 55.000 0.00 0.00 0.00 2.67
1149 2442 1.339631 CGGTAGGGTTTGAGGCATTCA 60.340 52.381 0.00 0.00 0.00 2.57
1150 2443 2.369394 GGTAGGGTTTGAGGCATTCAG 58.631 52.381 0.00 0.00 37.07 3.02
1151 2444 1.745653 GTAGGGTTTGAGGCATTCAGC 59.254 52.381 0.00 0.00 44.65 4.26
1170 2463 3.691118 CAGCATGTAGTACAAAGTGGCAT 59.309 43.478 7.16 0.00 0.00 4.40
1189 2482 9.646522 AGTGGCATTGGTATTTATTCTCTTATT 57.353 29.630 0.00 0.00 0.00 1.40
1294 2587 4.021104 TCGAAAATGAGCAGAAGAAGGAGA 60.021 41.667 0.00 0.00 0.00 3.71
1435 2728 7.225784 TGCTGGTTGTTATTTTGTGATACAT 57.774 32.000 0.00 0.00 0.00 2.29
1462 2755 3.702330 TCAAATACCGATCTGTACTGCG 58.298 45.455 0.00 0.00 0.00 5.18
1465 2758 1.957668 TACCGATCTGTACTGCGCTA 58.042 50.000 9.73 0.00 0.00 4.26
1466 2759 0.663688 ACCGATCTGTACTGCGCTAG 59.336 55.000 9.73 7.16 0.00 3.42
1475 2768 4.519350 TCTGTACTGCGCTAGTATTATGCT 59.481 41.667 18.30 0.00 43.44 3.79
1479 2772 2.989840 CTGCGCTAGTATTATGCTCCAC 59.010 50.000 9.73 0.00 0.00 4.02
1481 2774 2.596452 CGCTAGTATTATGCTCCACCG 58.404 52.381 0.00 0.00 0.00 4.94
1781 3075 3.270027 ACTTTAGCATCGCAGCAATGTA 58.730 40.909 0.00 0.00 36.85 2.29
1782 3076 3.689161 ACTTTAGCATCGCAGCAATGTAA 59.311 39.130 0.00 0.00 36.85 2.41
1794 3088 5.060816 CGCAGCAATGTAAAGTTTGTATTGG 59.939 40.000 19.55 10.74 31.28 3.16
1805 3099 3.957497 AGTTTGTATTGGCACCAGTTTGA 59.043 39.130 0.00 0.00 0.00 2.69
1818 3112 7.613801 TGGCACCAGTTTGATAAATTAGTATGT 59.386 33.333 0.00 0.00 0.00 2.29
1819 3113 8.466798 GGCACCAGTTTGATAAATTAGTATGTT 58.533 33.333 0.00 0.00 0.00 2.71
1841 3135 9.965824 ATGTTTTAATAGTTTATGTAGCATGGC 57.034 29.630 0.00 0.00 0.00 4.40
2102 3396 4.216411 TGAGGTTAGCATACAAGGTTCC 57.784 45.455 0.00 0.00 0.00 3.62
2166 3460 8.654997 AGTTAGTGATAATGTGCTCCATAATCT 58.345 33.333 0.00 0.00 31.97 2.40
2228 3522 6.759497 AATGCTAATCACCTTAAACTGGAC 57.241 37.500 0.00 0.00 0.00 4.02
2233 3527 6.706716 GCTAATCACCTTAAACTGGACTATCC 59.293 42.308 0.00 0.00 36.96 2.59
2242 3536 1.141053 ACTGGACTATCCGAAATGGGC 59.859 52.381 0.00 0.00 40.17 5.36
2263 3557 4.526625 GCTTGGCTATTTTGTTTGTTTGC 58.473 39.130 0.00 0.00 0.00 3.68
2275 3569 6.861065 TTGTTTGTTTGCCAAAACTACAAA 57.139 29.167 14.40 5.71 44.36 2.83
2290 3584 5.514274 ACTACAAACAATGTTCCCTGTTG 57.486 39.130 7.17 7.92 43.63 3.33
2330 3624 2.067091 ATTGAATCATGCAGGCGCGG 62.067 55.000 8.83 0.00 42.97 6.46
2333 3627 1.992233 GAATCATGCAGGCGCGGAAA 61.992 55.000 8.83 0.00 42.97 3.13
2339 3633 2.506881 CAGGCGCGGAAATTTGGC 60.507 61.111 8.83 0.00 0.00 4.52
2422 3716 5.874810 TCCGTCCAAATTTTGAGAGATACAG 59.125 40.000 10.72 0.00 0.00 2.74
2593 3887 4.890581 ACGAGTCTAGATGAAGCATACCTT 59.109 41.667 0.00 0.00 36.19 3.50
2649 3943 1.757699 AGGCGAGGAGGTAAGCTTAAG 59.242 52.381 7.99 0.00 0.00 1.85
2711 4009 6.947158 TGCATATGGTGATATGGCTTGATTTA 59.053 34.615 4.56 0.00 41.29 1.40
2726 4024 6.071051 GGCTTGATTTACCCTTCATGGTTTAA 60.071 38.462 0.00 0.00 39.91 1.52
2728 4026 7.875554 GCTTGATTTACCCTTCATGGTTTAAAA 59.124 33.333 0.00 0.00 39.91 1.52
2782 4160 2.396955 GCTTGCTGCTCACATCGCT 61.397 57.895 0.00 0.00 38.95 4.93
2784 4162 0.520404 CTTGCTGCTCACATCGCTTT 59.480 50.000 0.00 0.00 0.00 3.51
2901 4279 2.421619 CAAAGGTCAGAGCCTGAAGTC 58.578 52.381 6.48 1.53 42.46 3.01
2910 4288 4.593206 TCAGAGCCTGAAGTCCTTTTCTAA 59.407 41.667 2.78 0.00 37.57 2.10
2946 4331 5.422214 ACTTCGATTCCTCAAGGTAATGT 57.578 39.130 0.00 0.00 36.34 2.71
2956 4341 6.199376 TCCTCAAGGTAATGTACTGGTCATA 58.801 40.000 0.00 0.00 36.34 2.15
3065 4450 5.163343 ACTGGCAAGTAGTAGTTCACTTTCA 60.163 40.000 0.00 0.00 38.80 2.69
3081 4466 7.750229 TCACTTTCAATAGCCATTATGGATC 57.250 36.000 16.46 0.00 40.96 3.36
3085 4470 4.002982 TCAATAGCCATTATGGATCGCAC 58.997 43.478 16.46 0.00 40.96 5.34
3130 4515 4.796110 TGGCTGGAGATTTTTAGGCTAT 57.204 40.909 0.00 0.00 36.75 2.97
3131 4516 5.904984 TGGCTGGAGATTTTTAGGCTATA 57.095 39.130 0.00 0.00 36.75 1.31
3132 4517 5.621193 TGGCTGGAGATTTTTAGGCTATAC 58.379 41.667 0.00 0.00 36.75 1.47
3133 4518 5.131977 TGGCTGGAGATTTTTAGGCTATACA 59.868 40.000 0.00 0.00 36.75 2.29
3261 4646 0.734889 CAAATGACCGGGATGCTGTC 59.265 55.000 6.32 0.00 0.00 3.51
3276 4661 3.925379 TGCTGTCACGACATTTGTATCT 58.075 40.909 0.00 0.00 41.01 1.98
3279 4664 4.862574 GCTGTCACGACATTTGTATCTACA 59.137 41.667 0.00 0.00 41.01 2.74
3463 5042 5.818678 ACAGATGTTACACCAGGTTCTTA 57.181 39.130 0.00 0.00 0.00 2.10
3540 5119 0.322008 CTGAAGGCTCAACAGGTCCC 60.322 60.000 7.95 0.00 0.00 4.46
3541 5120 1.059584 TGAAGGCTCAACAGGTCCCA 61.060 55.000 0.00 0.00 0.00 4.37
3715 5294 0.965439 TTTCGGTTGGCCTTGGATTG 59.035 50.000 3.32 0.00 0.00 2.67
3780 5359 0.667487 TGCGAGCGAACTTTCTCTGG 60.667 55.000 0.00 0.00 0.00 3.86
3889 5469 8.289618 GTGAAGCTAGTTTGACAATTTCACATA 58.710 33.333 4.12 0.00 41.49 2.29
3913 5493 1.839994 CCATCACATACCCAGACACCT 59.160 52.381 0.00 0.00 0.00 4.00
3924 5504 3.072038 ACCCAGACACCTTTGGTACTTAC 59.928 47.826 0.00 0.00 32.11 2.34
3935 5515 7.172019 CACCTTTGGTACTTACGTATTTGTTCT 59.828 37.037 0.00 0.00 32.11 3.01
4032 5616 2.097142 GCAGTGCCAAATCTTCTGCTAG 59.903 50.000 2.85 0.00 45.14 3.42
4130 5716 3.697166 TCCTTGAGGAAAAAGGCATACC 58.303 45.455 0.00 0.00 43.38 2.73
4243 5834 6.649141 TCACGTAAAAGAATAAGCATCACTGT 59.351 34.615 0.00 0.00 0.00 3.55
4245 5836 8.440059 CACGTAAAAGAATAAGCATCACTGTAA 58.560 33.333 0.00 0.00 0.00 2.41
4312 5903 3.325425 TGTCACGACTTGGGGAAAGATTA 59.675 43.478 0.00 0.00 39.38 1.75
4314 5905 4.941873 GTCACGACTTGGGGAAAGATTAAT 59.058 41.667 0.00 0.00 39.38 1.40
4398 5990 4.643463 TGCGTGTGAATAAACCCTTTAGA 58.357 39.130 0.00 0.00 0.00 2.10
4482 6081 3.641648 CACGGCTCACAAAATGATTGTT 58.358 40.909 0.00 0.00 36.48 2.83
4517 6116 2.223044 CCTCGCCGAAAATTTAGCTGAC 60.223 50.000 0.00 0.00 0.00 3.51
4734 6333 3.732219 CAGCAACTGCACAAAACTACATG 59.268 43.478 4.22 0.00 45.16 3.21
4740 6339 2.480037 TGCACAAAACTACATGAGCTCG 59.520 45.455 9.64 0.00 34.75 5.03
4830 6429 3.585289 TGGGTAGGTGTGAGCATCTAAAA 59.415 43.478 0.00 0.00 39.76 1.52
4865 6464 8.999431 TGTTTCAAGTTTGATGATTACTACTCC 58.001 33.333 0.00 0.00 37.00 3.85
4866 6465 8.451748 GTTTCAAGTTTGATGATTACTACTCCC 58.548 37.037 0.00 0.00 37.00 4.30
4867 6466 7.496346 TCAAGTTTGATGATTACTACTCCCT 57.504 36.000 0.00 0.00 31.01 4.20
4868 6467 7.556844 TCAAGTTTGATGATTACTACTCCCTC 58.443 38.462 0.00 0.00 31.01 4.30
4869 6468 6.487299 AGTTTGATGATTACTACTCCCTCC 57.513 41.667 0.00 0.00 0.00 4.30
4870 6469 5.069251 AGTTTGATGATTACTACTCCCTCCG 59.931 44.000 0.00 0.00 0.00 4.63
4871 6470 4.180377 TGATGATTACTACTCCCTCCGT 57.820 45.455 0.00 0.00 0.00 4.69
4872 6471 4.543689 TGATGATTACTACTCCCTCCGTT 58.456 43.478 0.00 0.00 0.00 4.44
4873 6472 4.583489 TGATGATTACTACTCCCTCCGTTC 59.417 45.833 0.00 0.00 0.00 3.95
4874 6473 3.294214 TGATTACTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
4875 6474 2.905415 TTACTACTCCCTCCGTTCCA 57.095 50.000 0.00 0.00 0.00 3.53
4876 6475 2.905415 TACTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
4877 6476 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
4878 6477 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
4879 6478 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
4880 6479 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
4881 6480 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4882 6481 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4883 6482 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4884 6483 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4885 6484 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4886 6485 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4887 6486 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
4888 6487 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
4889 6488 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
4890 6489 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
4891 6490 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
4892 6491 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
4893 6492 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
4894 6493 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
4895 6494 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
4896 6495 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
4897 6496 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
4898 6497 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
4899 6498 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
4926 6525 9.676861 AACTTTAGTACAAAGTTAGGACAAAGT 57.323 29.630 23.13 1.26 45.51 2.66
4927 6526 9.676861 ACTTTAGTACAAAGTTAGGACAAAGTT 57.323 29.630 14.04 0.00 37.18 2.66
4928 6527 9.931210 CTTTAGTACAAAGTTAGGACAAAGTTG 57.069 33.333 0.00 0.00 0.00 3.16
4929 6528 6.937436 AGTACAAAGTTAGGACAAAGTTGG 57.063 37.500 0.00 0.00 0.00 3.77
4930 6529 5.826208 AGTACAAAGTTAGGACAAAGTTGGG 59.174 40.000 0.00 0.00 0.00 4.12
4931 6530 4.606210 ACAAAGTTAGGACAAAGTTGGGT 58.394 39.130 0.00 0.00 0.00 4.51
4932 6531 4.643334 ACAAAGTTAGGACAAAGTTGGGTC 59.357 41.667 0.00 0.43 0.00 4.46
4933 6532 4.513406 AAGTTAGGACAAAGTTGGGTCA 57.487 40.909 9.41 0.00 35.74 4.02
4934 6533 4.724279 AGTTAGGACAAAGTTGGGTCAT 57.276 40.909 9.41 5.58 35.74 3.06
4935 6534 4.652822 AGTTAGGACAAAGTTGGGTCATC 58.347 43.478 9.41 0.00 35.74 2.92
4936 6535 4.351111 AGTTAGGACAAAGTTGGGTCATCT 59.649 41.667 9.41 2.63 35.74 2.90
4937 6536 5.546499 AGTTAGGACAAAGTTGGGTCATCTA 59.454 40.000 9.41 1.89 35.74 1.98
4938 6537 6.215636 AGTTAGGACAAAGTTGGGTCATCTAT 59.784 38.462 9.41 0.00 35.74 1.98
4939 6538 5.520748 AGGACAAAGTTGGGTCATCTATT 57.479 39.130 9.41 0.00 35.74 1.73
4940 6539 5.892348 AGGACAAAGTTGGGTCATCTATTT 58.108 37.500 9.41 0.00 35.74 1.40
4941 6540 6.314917 AGGACAAAGTTGGGTCATCTATTTT 58.685 36.000 9.41 0.00 35.74 1.82
4942 6541 6.209391 AGGACAAAGTTGGGTCATCTATTTTG 59.791 38.462 9.41 0.00 35.74 2.44
4943 6542 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
4944 6543 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
4945 6544 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
4946 6545 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
4947 6546 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
4948 6547 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
4949 6548 2.949644 GGGTCATCTATTTTGGAACGGG 59.050 50.000 0.00 0.00 0.00 5.28
4950 6549 2.949644 GGTCATCTATTTTGGAACGGGG 59.050 50.000 0.00 0.00 0.00 5.73
4951 6550 2.949644 GTCATCTATTTTGGAACGGGGG 59.050 50.000 0.00 0.00 0.00 5.40
5045 6644 3.624861 CACCTGTACCTGAATCTCATTGC 59.375 47.826 0.00 0.00 0.00 3.56
5167 6767 5.163513 GCTTGGTGATGTTTCATTACCTTG 58.836 41.667 19.24 14.12 33.56 3.61
5358 6967 2.614057 GGATGATTCAACTAGCCCAACG 59.386 50.000 0.00 0.00 0.00 4.10
5376 6985 3.570926 ACGCAAAAGACACTAGATCGA 57.429 42.857 0.00 0.00 0.00 3.59
5473 7082 4.151070 GCATAACGATTGTAATGATGCGG 58.849 43.478 0.00 0.00 0.00 5.69
5526 7138 7.372714 CAGAGAAAGATGTCTCCATAGATCAG 58.627 42.308 0.00 0.00 44.43 2.90
5544 7156 2.770232 TCAGCAGTCCTCACATGATGAT 59.230 45.455 0.00 0.00 34.67 2.45
5616 7228 2.427506 GCCTCAAGTAGTTGGAAGGTG 58.572 52.381 15.82 0.80 32.49 4.00
5633 7245 1.412710 GGTGTGTGTCTCAACCTCTCA 59.587 52.381 0.00 0.00 0.00 3.27
5675 7287 0.034756 TGCAGCCAAGAGAAAGCGTA 59.965 50.000 0.00 0.00 0.00 4.42
5679 7291 2.094894 CAGCCAAGAGAAAGCGTACATG 59.905 50.000 0.00 0.00 0.00 3.21
5733 7646 6.433716 TGGTCACAAATGCTTGATGATAGAAA 59.566 34.615 0.00 0.00 36.33 2.52
5782 7695 2.822764 ACACAGACCGAGAAGTTTGAC 58.177 47.619 0.00 0.00 0.00 3.18
5808 7721 1.739562 GCGACTTGACCAGCTCCAG 60.740 63.158 0.00 0.00 0.00 3.86
5914 7827 3.025322 TGTTTTGAGGAGGAAAGGCAA 57.975 42.857 0.00 0.00 0.00 4.52
5917 7830 2.867109 TTGAGGAGGAAAGGCAAGAG 57.133 50.000 0.00 0.00 0.00 2.85
6006 7919 4.000988 TCGAAGGAAAGGTATTTGTCTGC 58.999 43.478 0.00 0.00 0.00 4.26
6021 7934 2.945008 TGTCTGCTGCCATATGCTTAAC 59.055 45.455 0.00 0.00 42.00 2.01
6062 7975 1.733402 TTTTGTGCTTCTGCCACCGG 61.733 55.000 0.00 0.00 38.71 5.28
6063 7976 4.641645 TGTGCTTCTGCCACCGGG 62.642 66.667 6.32 0.00 38.71 5.73
6066 7979 4.660938 GCTTCTGCCACCGGGGTT 62.661 66.667 6.32 0.00 39.65 4.11
6080 7993 2.560981 CCGGGGTTTTTCCATATATGCC 59.439 50.000 7.24 2.03 38.11 4.40
6133 8050 3.126001 AGAACAGTTCGCTTGAATGGA 57.874 42.857 7.68 0.00 33.37 3.41
6134 8051 3.070018 AGAACAGTTCGCTTGAATGGAG 58.930 45.455 7.68 0.00 33.37 3.86
6149 8066 6.564709 TGAATGGAGAGTTCATTGAAACAG 57.435 37.500 0.00 0.00 35.26 3.16
6151 8068 6.205464 TGAATGGAGAGTTCATTGAAACAGAC 59.795 38.462 0.00 0.00 35.26 3.51
6182 8100 9.248291 AGCTTTTTATGTTGCATTATTATTCCG 57.752 29.630 0.00 0.00 0.00 4.30
6231 8149 6.343716 TGTAACATAACTTGGTCTCCGTTA 57.656 37.500 0.00 0.00 0.00 3.18
6245 8163 5.471257 GTCTCCGTTATCCTGTTCCATATC 58.529 45.833 0.00 0.00 0.00 1.63
6278 8199 1.854227 GAACGGCCATGCTCTACTAC 58.146 55.000 2.24 0.00 0.00 2.73
6279 8200 1.409427 GAACGGCCATGCTCTACTACT 59.591 52.381 2.24 0.00 0.00 2.57
6280 8201 2.359981 ACGGCCATGCTCTACTACTA 57.640 50.000 2.24 0.00 0.00 1.82
6281 8202 1.955080 ACGGCCATGCTCTACTACTAC 59.045 52.381 2.24 0.00 0.00 2.73
6336 8257 6.652205 TCCAAAGAGGGAAAACATATACCT 57.348 37.500 0.00 0.00 38.24 3.08
6412 8333 5.065988 ACAAGTTTTGTAGGCAACACTGTAG 59.934 40.000 0.74 0.00 42.71 2.74
6429 8350 3.472652 TGTAGTGACATGTTGTGAACCC 58.527 45.455 0.00 0.00 0.00 4.11
6430 8351 2.727123 AGTGACATGTTGTGAACCCA 57.273 45.000 0.00 0.00 0.00 4.51
6431 8352 2.575532 AGTGACATGTTGTGAACCCAG 58.424 47.619 0.00 0.00 0.00 4.45
6432 8353 2.172505 AGTGACATGTTGTGAACCCAGA 59.827 45.455 0.00 0.00 0.00 3.86
6433 8354 2.290641 GTGACATGTTGTGAACCCAGAC 59.709 50.000 0.00 0.00 0.00 3.51
6434 8355 2.092699 TGACATGTTGTGAACCCAGACA 60.093 45.455 0.00 0.00 0.00 3.41
6443 8364 2.039879 GTGAACCCAGACACCCAGTTAT 59.960 50.000 0.00 0.00 0.00 1.89
6543 8465 4.152625 CGCGAAAGAGCCGGCTTG 62.153 66.667 33.34 18.65 0.00 4.01
6544 8466 4.467062 GCGAAAGAGCCGGCTTGC 62.467 66.667 33.34 24.10 0.00 4.01
6547 8494 4.284550 AAAGAGCCGGCTTGCCCA 62.285 61.111 33.34 0.00 0.00 5.36
6581 8531 2.780010 AGTTCCAGGGGTAGATTGGATG 59.220 50.000 0.00 0.00 40.48 3.51
6584 8534 3.469859 TCCAGGGGTAGATTGGATGAAA 58.530 45.455 0.00 0.00 36.13 2.69
6585 8535 3.855599 TCCAGGGGTAGATTGGATGAAAA 59.144 43.478 0.00 0.00 36.13 2.29
6586 8536 4.482025 TCCAGGGGTAGATTGGATGAAAAT 59.518 41.667 0.00 0.00 36.13 1.82
6587 8537 5.674496 TCCAGGGGTAGATTGGATGAAAATA 59.326 40.000 0.00 0.00 36.13 1.40
6658 8608 7.711772 TGTGCTCTTTCATGTGAAATTCAAATT 59.288 29.630 8.48 0.00 42.44 1.82
6684 8634 4.361420 CTGATGCATCTGAGTCAGTACAG 58.639 47.826 26.32 14.98 34.76 2.74
6716 8668 9.379791 CTAACCTCTAAACCTAACAAATCGAAT 57.620 33.333 0.00 0.00 0.00 3.34
6722 8674 9.058174 TCTAAACCTAACAAATCGAATGAACAA 57.942 29.630 8.40 0.00 0.00 2.83
6723 8675 9.840427 CTAAACCTAACAAATCGAATGAACAAT 57.160 29.630 8.40 0.00 0.00 2.71
6724 8676 8.519492 AAACCTAACAAATCGAATGAACAATG 57.481 30.769 8.40 0.00 0.00 2.82
6725 8677 6.620678 ACCTAACAAATCGAATGAACAATGG 58.379 36.000 8.40 4.71 0.00 3.16
6726 8678 6.432783 ACCTAACAAATCGAATGAACAATGGA 59.567 34.615 8.40 0.00 0.00 3.41
6728 8680 7.433131 CCTAACAAATCGAATGAACAATGGATG 59.567 37.037 8.40 0.00 0.00 3.51
6759 8735 7.624549 TCAGGTGAAAGAAATATCTTGCTAGT 58.375 34.615 0.00 0.00 45.19 2.57
6764 8740 6.540189 TGAAAGAAATATCTTGCTAGTCTGGC 59.460 38.462 0.32 0.32 45.19 4.85
6785 8761 4.802039 GGCAAATATCTGTGTCAAATGCTG 59.198 41.667 0.00 0.00 0.00 4.41
6798 8774 4.154195 GTCAAATGCTGGAGACACGTAAAT 59.846 41.667 0.00 0.00 35.60 1.40
7054 9030 2.997315 TCCAGCTCCAGTCCACCG 60.997 66.667 0.00 0.00 0.00 4.94
7130 9106 1.002366 CTTGAAATCGGAGCTCACGG 58.998 55.000 17.19 4.10 0.00 4.94
7212 9189 8.451908 AGTTGCAACTTTGTTCTAAGTTCTAT 57.548 30.769 26.36 0.00 44.33 1.98
7216 9193 8.721478 TGCAACTTTGTTCTAAGTTCTATCATC 58.279 33.333 8.80 0.00 44.33 2.92
7224 9201 9.605275 TGTTCTAAGTTCTATCATCTCATTTGG 57.395 33.333 0.00 0.00 0.00 3.28
7242 9219 4.566545 TTGGACAAGTGCAGTGTAATTG 57.433 40.909 17.99 17.99 31.08 2.32
7271 9248 4.032703 TCGTCATACTAACTTAACCGGC 57.967 45.455 0.00 0.00 0.00 6.13
7273 9250 3.549070 CGTCATACTAACTTAACCGGCAC 59.451 47.826 0.00 0.00 0.00 5.01
7375 9352 4.330944 ACGACCACACAAAGATTCAGTA 57.669 40.909 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.172803 GTGAACGACGATGCTAGGGT 59.827 55.000 0.00 0.00 0.00 4.34
117 118 0.247736 GACCGACAGATGCTGGAACT 59.752 55.000 0.00 0.00 35.51 3.01
134 135 2.473816 GCAAAAAGCTTCAACCAGGAC 58.526 47.619 0.00 0.00 41.15 3.85
277 278 4.182433 GCTCACAGGCTAGGGGGC 62.182 72.222 0.00 0.00 41.20 5.80
278 279 2.366167 AGCTCACAGGCTAGGGGG 60.366 66.667 0.00 0.00 41.16 5.40
279 280 1.053264 ATGAGCTCACAGGCTAGGGG 61.053 60.000 20.97 0.00 43.20 4.79
280 281 1.617850 CTATGAGCTCACAGGCTAGGG 59.382 57.143 20.97 0.00 43.20 3.53
281 282 1.617850 CCTATGAGCTCACAGGCTAGG 59.382 57.143 27.45 23.53 43.20 3.02
286 287 0.763652 ATGGCCTATGAGCTCACAGG 59.236 55.000 32.77 32.77 43.29 4.00
287 288 1.542767 CCATGGCCTATGAGCTCACAG 60.543 57.143 20.97 17.95 39.21 3.66
288 289 0.471191 CCATGGCCTATGAGCTCACA 59.529 55.000 20.97 12.70 39.21 3.58
289 290 0.888285 GCCATGGCCTATGAGCTCAC 60.888 60.000 27.24 5.98 39.21 3.51
290 291 1.453235 GCCATGGCCTATGAGCTCA 59.547 57.895 27.24 20.79 39.21 4.26
291 292 4.393693 GCCATGGCCTATGAGCTC 57.606 61.111 27.24 6.82 39.21 4.09
301 302 2.650813 CTACGACAGGAGGCCATGGC 62.651 65.000 29.47 29.47 41.06 4.40
302 303 1.330655 ACTACGACAGGAGGCCATGG 61.331 60.000 7.63 7.63 0.00 3.66
303 304 1.067212 GTACTACGACAGGAGGCCATG 59.933 57.143 5.01 2.81 0.00 3.66
304 305 1.400737 GTACTACGACAGGAGGCCAT 58.599 55.000 5.01 0.00 0.00 4.40
305 306 0.682209 GGTACTACGACAGGAGGCCA 60.682 60.000 5.01 0.00 0.00 5.36
306 307 1.722636 CGGTACTACGACAGGAGGCC 61.723 65.000 0.00 0.00 35.47 5.19
403 440 3.955524 TCTTCTCTCTCCTACGGGATT 57.044 47.619 0.00 0.00 41.36 3.01
443 480 0.592754 CTTCTCTCGCGACCGATTCC 60.593 60.000 3.71 0.00 43.47 3.01
469 506 0.251165 CCATGACCAACCGTTCCCTT 60.251 55.000 0.00 0.00 0.00 3.95
527 564 0.751643 TCGATCCACGCAGATCCTCA 60.752 55.000 9.10 0.00 39.67 3.86
548 585 2.669229 CCGGTCACACAGCATGCA 60.669 61.111 21.98 0.00 42.53 3.96
551 588 3.529341 TTCGCCGGTCACACAGCAT 62.529 57.895 1.90 0.00 0.00 3.79
568 605 3.061848 CATGCCGGCCGAACCTTT 61.062 61.111 30.73 1.44 35.61 3.11
583 620 4.542697 AGGTAAATATTTGGGAACGGCAT 58.457 39.130 11.05 0.00 0.00 4.40
597 634 9.816787 AGACCAAACCTAAATCAAAGGTAAATA 57.183 29.630 0.00 0.00 46.85 1.40
615 652 6.801575 TCAACCTTGAATTTGTAGACCAAAC 58.198 36.000 0.00 0.00 37.81 2.93
653 690 4.202430 ACCTCCGAAGCCTTCTTTTTAAGA 60.202 41.667 2.49 0.00 35.26 2.10
654 691 4.072839 ACCTCCGAAGCCTTCTTTTTAAG 58.927 43.478 2.49 0.00 31.48 1.85
655 692 3.818773 CACCTCCGAAGCCTTCTTTTTAA 59.181 43.478 2.49 0.00 31.48 1.52
662 699 0.670854 GTCACACCTCCGAAGCCTTC 60.671 60.000 0.00 0.00 0.00 3.46
670 707 1.594293 AAACGCTGTCACACCTCCG 60.594 57.895 0.00 0.00 0.00 4.63
685 722 2.048127 AGGAGCTCGCGGACAAAC 60.048 61.111 6.13 0.00 0.00 2.93
713 750 2.509336 GGGAGATGGTGACGTGCG 60.509 66.667 0.00 0.00 0.00 5.34
773 2044 0.036388 AGCGGCGAGATTTTCTTCCA 60.036 50.000 12.98 0.00 0.00 3.53
882 2154 1.596260 GATTAGGGCGCGTTTTAGGAC 59.404 52.381 8.43 0.00 0.00 3.85
974 2267 1.192146 GGTGCTACTGGGAGGTCACA 61.192 60.000 0.00 0.00 0.00 3.58
1101 2394 1.916181 CTTAAGCCAGGAAAGAGGGGA 59.084 52.381 0.00 0.00 0.00 4.81
1143 2436 5.327091 CACTTTGTACTACATGCTGAATGC 58.673 41.667 0.00 0.00 40.22 3.56
1144 2437 5.674569 GCCACTTTGTACTACATGCTGAATG 60.675 44.000 0.00 0.00 42.48 2.67
1145 2438 4.396166 GCCACTTTGTACTACATGCTGAAT 59.604 41.667 0.00 0.00 0.00 2.57
1147 2440 3.244387 TGCCACTTTGTACTACATGCTGA 60.244 43.478 0.00 0.00 0.00 4.26
1148 2441 3.073678 TGCCACTTTGTACTACATGCTG 58.926 45.455 0.00 0.00 0.00 4.41
1149 2442 3.417069 TGCCACTTTGTACTACATGCT 57.583 42.857 0.00 0.00 0.00 3.79
1150 2443 4.414852 CAATGCCACTTTGTACTACATGC 58.585 43.478 0.00 0.00 0.00 4.06
1151 2444 4.458989 ACCAATGCCACTTTGTACTACATG 59.541 41.667 0.00 0.00 0.00 3.21
1152 2445 4.662278 ACCAATGCCACTTTGTACTACAT 58.338 39.130 0.00 0.00 0.00 2.29
1154 2447 6.753107 AATACCAATGCCACTTTGTACTAC 57.247 37.500 0.00 0.00 0.00 2.73
1155 2448 9.469097 AATAAATACCAATGCCACTTTGTACTA 57.531 29.630 0.00 0.00 0.00 1.82
1163 2456 9.646522 AATAAGAGAATAAATACCAATGCCACT 57.353 29.630 0.00 0.00 0.00 4.00
1189 2482 4.415179 TCCCTCCATTCCTAATGCAATGTA 59.585 41.667 0.00 0.00 37.57 2.29
1192 2485 3.464833 ACTCCCTCCATTCCTAATGCAAT 59.535 43.478 0.00 0.00 37.57 3.56
1294 2587 7.653647 TGCTCAATTTTAAGTTTGGTAATCGT 58.346 30.769 0.00 0.00 0.00 3.73
1435 2728 4.471904 ACAGATCGGTATTTGAGCAAGA 57.528 40.909 0.00 0.00 0.00 3.02
1462 2755 3.256136 AGACGGTGGAGCATAATACTAGC 59.744 47.826 0.00 0.00 0.00 3.42
1465 2758 3.031736 ACAGACGGTGGAGCATAATACT 58.968 45.455 0.00 0.00 0.00 2.12
1466 2759 3.123804 CACAGACGGTGGAGCATAATAC 58.876 50.000 0.00 0.00 44.04 1.89
1479 2772 5.447279 GGAACAAGCATAAATACACAGACGG 60.447 44.000 0.00 0.00 0.00 4.79
1481 2774 5.163652 GGGGAACAAGCATAAATACACAGAC 60.164 44.000 0.00 0.00 0.00 3.51
1518 2811 8.299570 AGTTGAGGTTTATGATCAATTGTTCAC 58.700 33.333 18.98 8.36 35.56 3.18
1528 2821 7.433425 GCTGCATTTTAGTTGAGGTTTATGATC 59.567 37.037 0.00 0.00 0.00 2.92
1781 3075 5.105146 TCAAACTGGTGCCAATACAAACTTT 60.105 36.000 0.00 0.00 0.00 2.66
1782 3076 4.404073 TCAAACTGGTGCCAATACAAACTT 59.596 37.500 0.00 0.00 0.00 2.66
1794 3088 9.855021 AAACATACTAATTTATCAAACTGGTGC 57.145 29.630 0.00 0.00 0.00 5.01
1818 3112 7.136119 GCGCCATGCTACATAAACTATTAAAA 58.864 34.615 0.00 0.00 41.73 1.52
1819 3113 6.565060 CGCGCCATGCTACATAAACTATTAAA 60.565 38.462 0.00 0.00 43.27 1.52
1841 3135 2.926200 AGATCAGATGAGTTGAAACGCG 59.074 45.455 3.53 3.53 0.00 6.01
2139 3433 9.929180 GATTATGGAGCACATTATCACTAACTA 57.071 33.333 12.59 0.00 42.39 2.24
2140 3434 8.654997 AGATTATGGAGCACATTATCACTAACT 58.345 33.333 17.12 0.33 44.24 2.24
2141 3435 8.715998 CAGATTATGGAGCACATTATCACTAAC 58.284 37.037 17.12 0.00 44.24 2.34
2159 3453 4.641989 CCACAGGAAAGGGAACAGATTATG 59.358 45.833 0.00 0.00 0.00 1.90
2160 3454 4.540099 TCCACAGGAAAGGGAACAGATTAT 59.460 41.667 0.00 0.00 0.00 1.28
2166 3460 1.850345 ACTTCCACAGGAAAGGGAACA 59.150 47.619 0.00 0.00 41.54 3.18
2228 3522 0.954452 GCCAAGCCCATTTCGGATAG 59.046 55.000 0.00 0.00 36.56 2.08
2233 3527 3.189285 CAAAATAGCCAAGCCCATTTCG 58.811 45.455 0.00 0.00 0.00 3.46
2242 3536 4.574013 TGGCAAACAAACAAAATAGCCAAG 59.426 37.500 0.00 0.00 46.76 3.61
2263 3557 5.752955 CAGGGAACATTGTTTGTAGTTTTGG 59.247 40.000 3.08 0.00 37.68 3.28
2275 3569 2.091885 ACCAGACAACAGGGAACATTGT 60.092 45.455 0.00 0.00 42.53 2.71
2290 3584 8.500753 TCAATTAATTACACCATACACCAGAC 57.499 34.615 0.00 0.00 0.00 3.51
2330 3624 1.052287 CTGCACGAACGCCAAATTTC 58.948 50.000 0.00 0.00 0.00 2.17
2333 3627 2.255252 GCTGCACGAACGCCAAAT 59.745 55.556 0.00 0.00 0.00 2.32
2422 3716 6.942532 TTCTTGCCAATCCACTATAATGAC 57.057 37.500 0.00 0.00 0.00 3.06
2593 3887 6.263168 TCTCGATGCAGACTTCTGTAATATCA 59.737 38.462 8.04 0.00 45.45 2.15
2614 3908 0.596083 CGCCTGTAATGCCTCTCTCG 60.596 60.000 0.00 0.00 0.00 4.04
2649 3943 5.106277 GGAGAATTGTGGTTACTGGTAAAGC 60.106 44.000 0.00 0.00 0.00 3.51
2662 3956 3.420893 TGTTAAGCCAGGAGAATTGTGG 58.579 45.455 0.00 0.00 0.00 4.17
2735 4033 9.534565 ACAATATTGTAGTACTAGCATGTTGAG 57.465 33.333 23.84 9.84 40.16 3.02
2782 4160 7.277539 CAGAAGCAACCTGTAAATGAAACAAAA 59.722 33.333 0.00 0.00 0.00 2.44
2784 4162 6.096141 TCAGAAGCAACCTGTAAATGAAACAA 59.904 34.615 0.00 0.00 33.57 2.83
2919 4304 3.578716 ACCTTGAGGAATCGAAGTTGAGA 59.421 43.478 3.59 0.00 38.94 3.27
2922 4307 5.643777 ACATTACCTTGAGGAATCGAAGTTG 59.356 40.000 3.59 0.00 38.94 3.16
2928 4313 5.050490 CCAGTACATTACCTTGAGGAATCG 58.950 45.833 3.59 0.00 38.94 3.34
2937 4322 7.924412 CACGTAATATGACCAGTACATTACCTT 59.076 37.037 0.00 0.00 31.40 3.50
2946 4331 7.966246 AAACAAACACGTAATATGACCAGTA 57.034 32.000 0.00 0.00 0.00 2.74
2956 4341 2.619646 AGGCGGAAAACAAACACGTAAT 59.380 40.909 0.00 0.00 0.00 1.89
3032 4417 4.207891 ACTACTTGCCAGTACCATTCAG 57.792 45.455 0.00 0.00 34.06 3.02
3065 4450 3.009473 AGGTGCGATCCATAATGGCTATT 59.991 43.478 0.00 0.00 39.63 1.73
3081 4466 1.455383 AAACAGCCTTTCCAGGTGCG 61.455 55.000 0.00 0.00 43.18 5.34
3184 4569 5.182760 CAGAGCAAACCTAGCAAAGAGATTT 59.817 40.000 0.00 0.00 0.00 2.17
3261 4646 9.692749 ATAGGTAATGTAGATACAAATGTCGTG 57.307 33.333 0.00 0.00 39.99 4.35
3314 4699 7.871853 AGAACACTACCATAACAAACATGAAC 58.128 34.615 0.00 0.00 0.00 3.18
3463 5042 1.140452 CTCCTGGCATGTACTGATGCT 59.860 52.381 15.46 0.00 46.74 3.79
3715 5294 0.322008 CAGGAGTTTCTGTGCCTCCC 60.322 60.000 0.00 0.00 44.85 4.30
3863 5443 6.494842 TGTGAAATTGTCAAACTAGCTTCAC 58.505 36.000 0.00 0.00 41.00 3.18
3889 5469 4.141482 GGTGTCTGGGTATGTGATGGTAAT 60.141 45.833 0.00 0.00 0.00 1.89
3924 5504 8.697846 TCTGTACCAAATCTAGAACAAATACG 57.302 34.615 0.00 0.00 0.00 3.06
3935 5515 8.816894 AGAAAGAGATGTTCTGTACCAAATCTA 58.183 33.333 0.00 0.00 35.91 1.98
3994 5578 6.548993 TGGCACTGCATATATAACCATTGAAA 59.451 34.615 2.82 0.00 0.00 2.69
3995 5579 6.067350 TGGCACTGCATATATAACCATTGAA 58.933 36.000 2.82 0.00 0.00 2.69
4158 5749 6.605594 ACAATTGAGTTTAGGGTTGAAACTGA 59.394 34.615 13.59 0.00 45.02 3.41
4243 5834 9.394767 TGATATAGCAGCAAAGAAGAAATGTTA 57.605 29.630 0.00 0.00 0.00 2.41
4245 5836 7.870509 TGATATAGCAGCAAAGAAGAAATGT 57.129 32.000 0.00 0.00 0.00 2.71
4379 5971 7.923414 ATGTCTCTAAAGGGTTTATTCACAC 57.077 36.000 0.00 0.00 0.00 3.82
4429 6028 3.407424 TGTTAGCAAGCTCACATCAGT 57.593 42.857 5.05 0.00 0.00 3.41
4482 6081 5.013568 TCGGCGAGGTTATCTGAAAATAA 57.986 39.130 4.99 0.00 0.00 1.40
4517 6116 3.044986 CAAACACTCCTTTTGCATGTCG 58.955 45.455 0.00 0.00 0.00 4.35
4734 6333 2.217429 GGATGTCTTCCTTCGAGCTC 57.783 55.000 2.73 2.73 41.78 4.09
4860 6459 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
4861 6460 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
4862 6461 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
4863 6462 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4864 6463 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4865 6464 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
4866 6465 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
4867 6466 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
4868 6467 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
4869 6468 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
4870 6469 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
4871 6470 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
4872 6471 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
4873 6472 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
4901 6500 9.676861 AACTTTGTCCTAACTTTGTACTAAAGT 57.323 29.630 14.04 14.04 41.82 2.66
4902 6501 9.931210 CAACTTTGTCCTAACTTTGTACTAAAG 57.069 33.333 13.08 13.08 0.00 1.85
4903 6502 8.895737 CCAACTTTGTCCTAACTTTGTACTAAA 58.104 33.333 0.00 0.00 0.00 1.85
4904 6503 7.499895 CCCAACTTTGTCCTAACTTTGTACTAA 59.500 37.037 0.00 0.00 0.00 2.24
4905 6504 6.993902 CCCAACTTTGTCCTAACTTTGTACTA 59.006 38.462 0.00 0.00 0.00 1.82
4906 6505 5.826208 CCCAACTTTGTCCTAACTTTGTACT 59.174 40.000 0.00 0.00 0.00 2.73
4907 6506 5.591472 ACCCAACTTTGTCCTAACTTTGTAC 59.409 40.000 0.00 0.00 0.00 2.90
4908 6507 5.757988 ACCCAACTTTGTCCTAACTTTGTA 58.242 37.500 0.00 0.00 0.00 2.41
4909 6508 4.606210 ACCCAACTTTGTCCTAACTTTGT 58.394 39.130 0.00 0.00 0.00 2.83
4910 6509 4.642885 TGACCCAACTTTGTCCTAACTTTG 59.357 41.667 0.00 0.00 0.00 2.77
4911 6510 4.862371 TGACCCAACTTTGTCCTAACTTT 58.138 39.130 0.00 0.00 0.00 2.66
4912 6511 4.513406 TGACCCAACTTTGTCCTAACTT 57.487 40.909 0.00 0.00 0.00 2.66
4913 6512 4.351111 AGATGACCCAACTTTGTCCTAACT 59.649 41.667 0.00 0.00 0.00 2.24
4914 6513 4.652822 AGATGACCCAACTTTGTCCTAAC 58.347 43.478 0.00 0.00 0.00 2.34
4915 6514 4.993705 AGATGACCCAACTTTGTCCTAA 57.006 40.909 0.00 0.00 0.00 2.69
4916 6515 6.636454 AATAGATGACCCAACTTTGTCCTA 57.364 37.500 0.00 0.00 0.00 2.94
4917 6516 5.520748 AATAGATGACCCAACTTTGTCCT 57.479 39.130 0.00 0.00 0.00 3.85
4918 6517 6.389906 CAAAATAGATGACCCAACTTTGTCC 58.610 40.000 0.00 0.00 0.00 4.02
4919 6518 6.208599 TCCAAAATAGATGACCCAACTTTGTC 59.791 38.462 0.00 0.00 0.00 3.18
4920 6519 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
4921 6520 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
4922 6521 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
4923 6522 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
4924 6523 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
4925 6524 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
4926 6525 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
4927 6526 3.616219 CCGTTCCAAAATAGATGACCCA 58.384 45.455 0.00 0.00 0.00 4.51
4928 6527 2.949644 CCCGTTCCAAAATAGATGACCC 59.050 50.000 0.00 0.00 0.00 4.46
4929 6528 2.949644 CCCCGTTCCAAAATAGATGACC 59.050 50.000 0.00 0.00 0.00 4.02
4930 6529 2.949644 CCCCCGTTCCAAAATAGATGAC 59.050 50.000 0.00 0.00 0.00 3.06
4931 6530 3.290948 CCCCCGTTCCAAAATAGATGA 57.709 47.619 0.00 0.00 0.00 2.92
4948 6547 1.205460 TTCCAGCCAACTACTCCCCC 61.205 60.000 0.00 0.00 0.00 5.40
4949 6548 0.035343 GTTCCAGCCAACTACTCCCC 60.035 60.000 0.00 0.00 0.00 4.81
4950 6549 0.035343 GGTTCCAGCCAACTACTCCC 60.035 60.000 0.00 0.00 0.00 4.30
4951 6550 0.984995 AGGTTCCAGCCAACTACTCC 59.015 55.000 0.00 0.00 0.00 3.85
4952 6551 1.348036 ACAGGTTCCAGCCAACTACTC 59.652 52.381 0.00 0.00 0.00 2.59
4953 6552 1.435256 ACAGGTTCCAGCCAACTACT 58.565 50.000 0.00 0.00 0.00 2.57
4954 6553 3.532542 GATACAGGTTCCAGCCAACTAC 58.467 50.000 0.00 0.00 0.00 2.73
5167 6767 6.942532 TGGAGATACAAAATATCAACTGCC 57.057 37.500 0.00 0.00 0.00 4.85
5252 6861 0.035881 CTTCCCTGAGCAGCAAGACA 59.964 55.000 0.00 0.00 0.00 3.41
5253 6862 0.036022 ACTTCCCTGAGCAGCAAGAC 59.964 55.000 11.95 0.00 0.00 3.01
5295 6904 4.391155 ACATTCGCAACCCTGTAAAAGTA 58.609 39.130 0.00 0.00 0.00 2.24
5385 6994 7.439381 TGGTATTTGAGTTAATATCCGAGGAC 58.561 38.462 0.00 0.00 0.00 3.85
5473 7082 1.927895 ATCGACTCATCCTTCGTTGC 58.072 50.000 0.00 0.00 36.60 4.17
5526 7138 4.701765 AGTTATCATCATGTGAGGACTGC 58.298 43.478 0.00 0.00 40.92 4.40
5577 7189 3.259876 AGGCGGCCTCGTTATCATAATTA 59.740 43.478 17.69 0.00 38.89 1.40
5604 7216 3.035363 TGAGACACACACCTTCCAACTA 58.965 45.455 0.00 0.00 0.00 2.24
5616 7228 3.126831 CAGTTGAGAGGTTGAGACACAC 58.873 50.000 0.00 0.00 0.00 3.82
5633 7245 6.794636 GCAAAAACGTTGAACAAATTTCAGTT 59.205 30.769 0.00 0.00 0.00 3.16
5675 7287 1.877672 ATGGATGGTGTGGGGCATGT 61.878 55.000 0.00 0.00 0.00 3.21
5679 7291 1.329913 GGAAATGGATGGTGTGGGGC 61.330 60.000 0.00 0.00 0.00 5.80
5733 7646 4.320494 GCATGAAGAACCGAGTTTGATTGT 60.320 41.667 0.00 0.00 0.00 2.71
5782 7695 2.027625 GGTCAAGTCGCCCAACTCG 61.028 63.158 0.00 0.00 0.00 4.18
5914 7827 3.012518 CAAGTGGAAATCCGAATGCTCT 58.987 45.455 0.00 0.00 39.43 4.09
5917 7830 1.469767 GCCAAGTGGAAATCCGAATGC 60.470 52.381 0.18 0.00 39.43 3.56
6006 7919 6.624352 ACATAACTGTTAAGCATATGGCAG 57.376 37.500 4.56 0.00 37.35 4.85
6021 7934 3.052036 GCAACAGGCAACAACATAACTG 58.948 45.455 0.00 0.00 43.97 3.16
6038 7951 1.211743 GGCAGAAGCACAAAAGCAAC 58.788 50.000 0.00 0.00 44.61 4.17
6062 7975 8.646900 TCAAAATAGGCATATATGGAAAAACCC 58.353 33.333 14.51 5.18 38.00 4.11
6063 7976 9.476202 GTCAAAATAGGCATATATGGAAAAACC 57.524 33.333 14.51 5.86 39.54 3.27
6066 7979 9.077885 GGAGTCAAAATAGGCATATATGGAAAA 57.922 33.333 14.51 0.00 0.00 2.29
6109 8022 5.043248 CCATTCAAGCGAACTGTTCTTTTT 58.957 37.500 17.60 7.01 32.81 1.94
6110 8023 4.338118 TCCATTCAAGCGAACTGTTCTTTT 59.662 37.500 17.60 9.22 32.81 2.27
6111 8024 3.882888 TCCATTCAAGCGAACTGTTCTTT 59.117 39.130 17.60 9.54 32.81 2.52
6112 8025 3.476552 TCCATTCAAGCGAACTGTTCTT 58.523 40.909 17.60 4.30 32.81 2.52
6113 8026 3.070018 CTCCATTCAAGCGAACTGTTCT 58.930 45.455 17.60 0.00 32.81 3.01
6114 8027 3.067106 TCTCCATTCAAGCGAACTGTTC 58.933 45.455 10.48 10.48 32.81 3.18
6117 8030 2.693069 ACTCTCCATTCAAGCGAACTG 58.307 47.619 0.00 0.00 32.81 3.16
6126 8043 6.205464 GTCTGTTTCAATGAACTCTCCATTCA 59.795 38.462 0.00 0.00 40.25 2.57
6133 8050 8.317679 AGCTAATAGTCTGTTTCAATGAACTCT 58.682 33.333 0.00 0.00 0.00 3.24
6134 8051 8.485976 AGCTAATAGTCTGTTTCAATGAACTC 57.514 34.615 0.00 0.00 0.00 3.01
6182 8100 5.584251 CCTGTTCATCTCTTCTCTAAAAGGC 59.416 44.000 0.00 0.00 0.00 4.35
6258 8176 0.384309 TAGTAGAGCATGGCCGTTCG 59.616 55.000 0.00 0.00 0.00 3.95
6278 8199 3.185299 TTGGGCGTGGGTGTGGTAG 62.185 63.158 0.00 0.00 0.00 3.18
6279 8200 3.169242 TTGGGCGTGGGTGTGGTA 61.169 61.111 0.00 0.00 0.00 3.25
6280 8201 4.579384 CTTGGGCGTGGGTGTGGT 62.579 66.667 0.00 0.00 0.00 4.16
6281 8202 3.783362 TTCTTGGGCGTGGGTGTGG 62.783 63.158 0.00 0.00 0.00 4.17
6380 8301 3.476552 CCTACAAAACTTGTGGCTCTGA 58.523 45.455 2.30 0.00 45.03 3.27
6412 8333 2.290641 GTCTGGGTTCACAACATGTCAC 59.709 50.000 0.00 0.00 0.00 3.67
6426 8347 3.105283 GTCTATAACTGGGTGTCTGGGT 58.895 50.000 0.00 0.00 0.00 4.51
6513 8434 3.168963 TCTTTCGCGACGATTAACTCAG 58.831 45.455 9.15 0.00 35.23 3.35
6544 8466 2.621668 GGAACTCCATTTCCCTTCTGGG 60.622 54.545 0.00 0.00 44.84 4.45
6547 8494 2.310052 CCTGGAACTCCATTTCCCTTCT 59.690 50.000 0.00 0.00 46.46 2.85
6552 8499 0.704664 ACCCCTGGAACTCCATTTCC 59.295 55.000 0.00 0.00 46.46 3.13
6564 8511 3.951563 TTTCATCCAATCTACCCCTGG 57.048 47.619 0.00 0.00 0.00 4.45
6584 8534 8.465999 TCCAAATAGTTGCACGAAATCATTATT 58.534 29.630 0.00 0.00 33.01 1.40
6585 8535 7.915397 GTCCAAATAGTTGCACGAAATCATTAT 59.085 33.333 0.00 0.00 33.01 1.28
6586 8536 7.094592 TGTCCAAATAGTTGCACGAAATCATTA 60.095 33.333 0.00 0.00 26.81 1.90
6587 8537 6.092748 GTCCAAATAGTTGCACGAAATCATT 58.907 36.000 0.00 0.00 33.01 2.57
6605 8555 1.909986 TCACCGGGTATCATGTCCAAA 59.090 47.619 6.32 0.00 0.00 3.28
6658 8608 1.126488 GACTCAGATGCATCAGGGGA 58.874 55.000 27.81 17.24 0.00 4.81
6716 8668 6.267242 TCACCTGAAAAATCATCCATTGTTCA 59.733 34.615 1.04 1.04 43.75 3.18
6722 8674 7.543359 TTCTTTCACCTGAAAAATCATCCAT 57.457 32.000 2.25 0.00 42.72 3.41
6723 8675 6.975196 TTCTTTCACCTGAAAAATCATCCA 57.025 33.333 2.25 0.00 42.72 3.41
6759 8735 5.393352 GCATTTGACACAGATATTTGCCAGA 60.393 40.000 0.00 0.00 0.00 3.86
6764 8740 6.094464 TCTCCAGCATTTGACACAGATATTTG 59.906 38.462 0.00 0.00 0.00 2.32
6785 8761 6.436261 TGATATCTTCGATTTACGTGTCTCC 58.564 40.000 0.00 0.00 43.13 3.71
6798 8774 5.906073 TGTGCATCTTTCTGATATCTTCGA 58.094 37.500 3.98 0.00 33.36 3.71
7054 9030 2.739671 GGGGGTCGTACACGTTGC 60.740 66.667 1.19 0.00 40.80 4.17
7080 9056 6.326375 GCAATAATCTATCTGACGAGGTAGG 58.674 44.000 0.00 0.00 34.07 3.18
7130 9106 0.743097 GCTGAGGGCATGGATTGTTC 59.257 55.000 0.00 0.00 41.35 3.18
7167 9143 6.272318 CAACTAGAGAAGCATCCAAGTCTAG 58.728 44.000 9.97 9.97 39.51 2.43
7212 9189 3.753815 TGCACTTGTCCAAATGAGATGA 58.246 40.909 0.00 0.00 0.00 2.92
7216 9193 2.620115 ACACTGCACTTGTCCAAATGAG 59.380 45.455 0.00 0.00 0.00 2.90
7224 9201 3.499918 AGCTCAATTACACTGCACTTGTC 59.500 43.478 0.00 0.00 0.00 3.18
7271 9248 4.744631 TGCAGTACATATACAGCATTCGTG 59.255 41.667 0.00 0.00 45.71 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.