Multiple sequence alignment - TraesCS4A01G234700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G234700 chr4A 100.000 6560 0 0 1 6560 543741221 543734662 0.000000e+00 12115.0
1 TraesCS4A01G234700 chr4A 95.652 115 5 0 6136 6250 593739131 593739017 1.120000e-42 185.0
2 TraesCS4A01G234700 chr4B 93.689 4215 206 26 1 4174 78021053 78025248 0.000000e+00 6255.0
3 TraesCS4A01G234700 chr4B 93.848 959 44 13 4212 5161 78025250 78026202 0.000000e+00 1430.0
4 TraesCS4A01G234700 chr4B 96.328 354 12 1 5224 5576 78026225 78026578 1.230000e-161 580.0
5 TraesCS4A01G234700 chr4B 95.639 321 13 1 6241 6560 78027491 78027811 1.260000e-141 514.0
6 TraesCS4A01G234700 chr4B 81.306 337 26 16 5794 6109 78027128 78027448 8.500000e-59 239.0
7 TraesCS4A01G234700 chr4B 86.190 210 23 2 5593 5796 78026664 78026873 8.560000e-54 222.0
8 TraesCS4A01G234700 chr4B 90.476 42 3 1 4932 4973 492207538 492207498 3.000000e-03 54.7
9 TraesCS4A01G234700 chr4D 94.916 3226 143 7 904 4129 53237546 53240750 0.000000e+00 5029.0
10 TraesCS4A01G234700 chr4D 89.356 761 50 16 1 754 53236663 53237399 0.000000e+00 928.0
11 TraesCS4A01G234700 chr4D 91.105 697 40 5 4200 4880 53240749 53241439 0.000000e+00 924.0
12 TraesCS4A01G234700 chr4D 96.262 321 11 1 6241 6560 53242701 53243021 5.830000e-145 525.0
13 TraesCS4A01G234700 chr4D 95.181 332 14 1 5250 5581 53241706 53242035 2.100000e-144 523.0
14 TraesCS4A01G234700 chr4D 82.765 557 52 16 5580 6109 53242112 53242651 2.160000e-124 457.0
15 TraesCS4A01G234700 chr1A 83.889 540 60 10 6046 6560 48725000 48725537 2.130000e-134 490.0
16 TraesCS4A01G234700 chr1A 82.271 361 41 7 1355 1706 180408707 180409053 2.310000e-74 291.0
17 TraesCS4A01G234700 chr1D 87.117 326 29 6 6248 6560 48458398 48458723 2.250000e-94 357.0
18 TraesCS4A01G234700 chr1D 94.118 119 5 2 6126 6243 227655428 227655311 5.230000e-41 180.0
19 TraesCS4A01G234700 chr1D 84.286 70 10 1 4869 4937 36838257 36838326 4.250000e-07 67.6
20 TraesCS4A01G234700 chr1D 100.000 34 0 0 4940 4973 19440106 19440073 5.490000e-06 63.9
21 TraesCS4A01G234700 chr2B 77.027 666 98 26 1057 1700 384321228 384321860 1.360000e-86 331.0
22 TraesCS4A01G234700 chr2B 96.429 112 4 0 6136 6247 248138505 248138394 1.120000e-42 185.0
23 TraesCS4A01G234700 chr2B 81.707 82 10 4 4897 4973 482952442 482952361 5.490000e-06 63.9
24 TraesCS4A01G234700 chr6A 94.958 119 6 0 6137 6255 250834622 250834504 3.120000e-43 187.0
25 TraesCS4A01G234700 chr6A 83.871 62 8 2 4873 4934 37058732 37058791 2.550000e-04 58.4
26 TraesCS4A01G234700 chr6A 92.500 40 2 1 4934 4973 40610915 40610877 1.000000e-03 56.5
27 TraesCS4A01G234700 chr2D 97.273 110 3 0 6136 6245 382457279 382457170 3.120000e-43 187.0
28 TraesCS4A01G234700 chr2D 95.690 116 4 1 6132 6247 63660180 63660066 1.120000e-42 185.0
29 TraesCS4A01G234700 chr2D 94.915 59 3 0 4878 4936 78531704 78531762 7.000000e-15 93.5
30 TraesCS4A01G234700 chr5A 95.614 114 5 0 6137 6250 492896367 492896254 4.040000e-42 183.0
31 TraesCS4A01G234700 chr2A 94.167 120 5 2 6125 6244 82351695 82351578 1.450000e-41 182.0
32 TraesCS4A01G234700 chr2A 94.118 119 5 2 6130 6246 555342338 555342220 5.230000e-41 180.0
33 TraesCS4A01G234700 chr2A 94.915 59 3 0 4878 4936 78840843 78840901 7.000000e-15 93.5
34 TraesCS4A01G234700 chr6D 84.375 96 4 3 4875 4970 437953672 437953756 4.220000e-12 84.2
35 TraesCS4A01G234700 chr6D 85.484 62 7 2 4873 4934 32649676 32649735 5.490000e-06 63.9
36 TraesCS4A01G234700 chr7D 97.561 41 0 1 4933 4973 42838856 42838895 1.180000e-07 69.4
37 TraesCS4A01G234700 chrUn 86.885 61 7 1 4875 4934 343707060 343707120 4.250000e-07 67.6
38 TraesCS4A01G234700 chr7A 100.000 36 0 0 4938 4973 42523431 42523466 4.250000e-07 67.6
39 TraesCS4A01G234700 chr1B 88.235 51 6 0 4884 4934 1833216 1833166 1.980000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G234700 chr4A 543734662 543741221 6559 True 12115.000000 12115 100.000000 1 6560 1 chr4A.!!$R1 6559
1 TraesCS4A01G234700 chr4B 78021053 78027811 6758 False 1540.000000 6255 91.166667 1 6560 6 chr4B.!!$F1 6559
2 TraesCS4A01G234700 chr4D 53236663 53243021 6358 False 1397.666667 5029 91.597500 1 6560 6 chr4D.!!$F1 6559
3 TraesCS4A01G234700 chr1A 48725000 48725537 537 False 490.000000 490 83.889000 6046 6560 1 chr1A.!!$F1 514
4 TraesCS4A01G234700 chr2B 384321228 384321860 632 False 331.000000 331 77.027000 1057 1700 1 chr2B.!!$F1 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 248 1.733402 TTTTGTGCTTCTGCCACCGG 61.733 55.0 0.00 0.00 38.71 5.28 F
1902 1989 0.991146 TGGTGCAGAGGGAGCAAATA 59.009 50.0 0.00 0.00 44.64 1.40 F
2277 2364 0.106819 ATCAGGTTCCTGCAGATGGC 60.107 55.0 17.39 2.04 45.13 4.40 F
2896 2983 0.256464 TGGGAACACCGTGGAAGTTT 59.744 50.0 3.03 0.00 44.64 2.66 F
4134 4222 0.546747 TCTGGTTCCTGGGTAGTGGG 60.547 60.0 0.00 0.00 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 2049 0.249911 GGGTAGTATCTTGCAGGGCG 60.250 60.000 0.0 0.0 0.00 6.13 R
2775 2862 0.322456 TAGTTTCGCAGGCAGCCAAT 60.322 50.000 15.8 0.0 41.38 3.16 R
4129 4217 0.399233 GAGCCTCCCATAGTCCCACT 60.399 60.000 0.0 0.0 0.00 4.00 R
4263 4351 1.002468 GCCACCTGCGTAAATGCATAG 60.002 52.381 0.0 0.0 45.26 2.23 R
6133 6611 0.037303 TCGGAACAGAGGGAGTACGT 59.963 55.000 0.0 0.0 0.00 3.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 3.025322 TGTTTTGAGGAGGAAAGGCAA 57.975 42.857 0.00 0.00 0.00 4.52
102 103 2.867109 TTGAGGAGGAAAGGCAAGAG 57.133 50.000 0.00 0.00 0.00 2.85
191 192 4.000988 TCGAAGGAAAGGTATTTGTCTGC 58.999 43.478 0.00 0.00 0.00 4.26
206 207 2.945008 TGTCTGCTGCCATATGCTTAAC 59.055 45.455 0.00 0.00 42.00 2.01
247 248 1.733402 TTTTGTGCTTCTGCCACCGG 61.733 55.000 0.00 0.00 38.71 5.28
248 249 4.641645 TGTGCTTCTGCCACCGGG 62.642 66.667 6.32 0.00 38.71 5.73
251 252 4.660938 GCTTCTGCCACCGGGGTT 62.661 66.667 6.32 0.00 39.65 4.11
265 266 2.560981 CCGGGGTTTTTCCATATATGCC 59.439 50.000 7.24 2.03 38.11 4.40
318 323 3.126001 AGAACAGTTCGCTTGAATGGA 57.874 42.857 7.68 0.00 33.37 3.41
319 324 3.070018 AGAACAGTTCGCTTGAATGGAG 58.930 45.455 7.68 0.00 33.37 3.86
334 339 6.564709 TGAATGGAGAGTTCATTGAAACAG 57.435 37.500 0.00 0.00 35.26 3.16
336 341 6.205464 TGAATGGAGAGTTCATTGAAACAGAC 59.795 38.462 0.00 0.00 35.26 3.51
367 373 9.248291 AGCTTTTTATGTTGCATTATTATTCCG 57.752 29.630 0.00 0.00 0.00 4.30
416 422 6.343716 TGTAACATAACTTGGTCTCCGTTA 57.656 37.500 0.00 0.00 0.00 3.18
430 436 5.471257 GTCTCCGTTATCCTGTTCCATATC 58.529 45.833 0.00 0.00 0.00 1.63
466 472 1.955080 ACGGCCATGCTCTACTACTAC 59.045 52.381 2.24 0.00 0.00 2.73
521 527 6.652205 TCCAAAGAGGGAAAACATATACCT 57.348 37.500 0.00 0.00 38.24 3.08
597 603 5.065988 ACAAGTTTTGTAGGCAACACTGTAG 59.934 40.000 0.74 0.00 42.71 2.74
614 620 3.472652 TGTAGTGACATGTTGTGAACCC 58.527 45.455 0.00 0.00 0.00 4.11
615 621 2.727123 AGTGACATGTTGTGAACCCA 57.273 45.000 0.00 0.00 0.00 4.51
616 622 2.575532 AGTGACATGTTGTGAACCCAG 58.424 47.619 0.00 0.00 0.00 4.45
617 623 2.172505 AGTGACATGTTGTGAACCCAGA 59.827 45.455 0.00 0.00 0.00 3.86
618 624 2.290641 GTGACATGTTGTGAACCCAGAC 59.709 50.000 0.00 0.00 0.00 3.51
619 625 2.092699 TGACATGTTGTGAACCCAGACA 60.093 45.455 0.00 0.00 0.00 3.41
628 634 2.039879 GTGAACCCAGACACCCAGTTAT 59.960 50.000 0.00 0.00 0.00 1.89
728 736 4.152625 CGCGAAAGAGCCGGCTTG 62.153 66.667 33.34 18.65 0.00 4.01
771 803 4.482025 TCCAGGGGTAGATTGGATGAAAAT 59.518 41.667 0.00 0.00 36.13 1.82
772 804 5.674496 TCCAGGGGTAGATTGGATGAAAATA 59.326 40.000 0.00 0.00 36.13 1.40
843 875 7.711772 TGTGCTCTTTCATGTGAAATTCAAATT 59.288 29.630 8.48 0.00 42.44 1.82
869 901 4.361420 CTGATGCATCTGAGTCAGTACAG 58.639 47.826 26.32 14.98 34.76 2.74
901 935 9.379791 CTAACCTCTAAACCTAACAAATCGAAT 57.620 33.333 0.00 0.00 0.00 3.34
907 941 9.058174 TCTAAACCTAACAAATCGAATGAACAA 57.942 29.630 8.40 0.00 0.00 2.83
908 942 9.840427 CTAAACCTAACAAATCGAATGAACAAT 57.160 29.630 8.40 0.00 0.00 2.71
909 943 8.519492 AAACCTAACAAATCGAATGAACAATG 57.481 30.769 8.40 0.00 0.00 2.82
910 944 6.620678 ACCTAACAAATCGAATGAACAATGG 58.379 36.000 8.40 4.71 0.00 3.16
911 945 6.432783 ACCTAACAAATCGAATGAACAATGGA 59.567 34.615 8.40 0.00 0.00 3.41
913 947 7.433131 CCTAACAAATCGAATGAACAATGGATG 59.567 37.037 8.40 0.00 0.00 3.51
944 1002 7.624549 TCAGGTGAAAGAAATATCTTGCTAGT 58.375 34.615 0.00 0.00 45.19 2.57
949 1007 6.540189 TGAAAGAAATATCTTGCTAGTCTGGC 59.460 38.462 0.32 0.32 45.19 4.85
970 1028 4.802039 GGCAAATATCTGTGTCAAATGCTG 59.198 41.667 0.00 0.00 0.00 4.41
983 1041 4.154195 GTCAAATGCTGGAGACACGTAAAT 59.846 41.667 0.00 0.00 35.60 1.40
1239 1297 2.997315 TCCAGCTCCAGTCCACCG 60.997 66.667 0.00 0.00 0.00 4.94
1315 1389 1.002366 CTTGAAATCGGAGCTCACGG 58.998 55.000 17.19 4.10 0.00 4.94
1397 1481 8.451908 AGTTGCAACTTTGTTCTAAGTTCTAT 57.548 30.769 26.36 0.00 44.33 1.98
1401 1485 8.721478 TGCAACTTTGTTCTAAGTTCTATCATC 58.279 33.333 8.80 0.00 44.33 2.92
1456 1540 4.032703 TCGTCATACTAACTTAACCGGC 57.967 45.455 0.00 0.00 0.00 6.13
1560 1644 4.330944 ACGACCACACAAAGATTCAGTA 57.669 40.909 0.00 0.00 0.00 2.74
1581 1665 3.217626 AGCTTTATCACATAGCTTGGGC 58.782 45.455 0.00 0.00 42.30 5.36
1830 1917 1.606737 GCTCAGTTAGATGGGATCGCC 60.607 57.143 7.38 0.12 0.00 5.54
1868 1955 2.806745 CGTTGACCGATGGGATAAGCAT 60.807 50.000 0.00 0.00 39.56 3.79
1897 1984 1.078567 CTCTTGGTGCAGAGGGAGC 60.079 63.158 0.00 0.00 37.28 4.70
1902 1989 0.991146 TGGTGCAGAGGGAGCAAATA 59.009 50.000 0.00 0.00 44.64 1.40
1908 1995 3.395607 TGCAGAGGGAGCAAATATATGGT 59.604 43.478 0.00 0.00 39.39 3.55
1962 2049 3.610911 CTTCTGGGAGTTTGTATGGGAC 58.389 50.000 0.00 0.00 0.00 4.46
1965 2052 0.746923 GGGAGTTTGTATGGGACGCC 60.747 60.000 0.00 0.00 33.20 5.68
1980 2067 0.464452 ACGCCCTGCAAGATACTACC 59.536 55.000 0.00 0.00 34.07 3.18
2112 2199 0.854062 TTGTTTCTGTTACCGCGACG 59.146 50.000 8.23 0.00 0.00 5.12
2207 2294 0.322546 GACGGGTTCAGGCAAAGGAT 60.323 55.000 0.00 0.00 0.00 3.24
2235 2322 3.312890 AGATGATCTTCTTCCCGGTGAT 58.687 45.455 5.31 0.00 0.00 3.06
2277 2364 0.106819 ATCAGGTTCCTGCAGATGGC 60.107 55.000 17.39 2.04 45.13 4.40
2289 2376 1.537202 GCAGATGGCGTCTTTGTTTCT 59.463 47.619 6.47 0.00 34.00 2.52
2305 2392 3.130340 TGTTTCTGGGTTTTCTCTGTTGC 59.870 43.478 0.00 0.00 0.00 4.17
2529 2616 5.437060 AGTGGAGTTGCAAATATTATCGGT 58.563 37.500 0.00 0.00 0.00 4.69
2606 2693 8.709272 TTAATTGGCCAGAAATATCATGATGA 57.291 30.769 18.72 0.00 0.00 2.92
2631 2718 2.037772 TCTTTTGAGCTGGTCAGGAGAC 59.962 50.000 9.70 0.00 44.21 3.36
2709 2796 2.353610 GCCTGAGGGGTTGCCATTG 61.354 63.158 0.00 0.00 37.43 2.82
2775 2862 1.847798 ATAAGGCACTGGTCCGGCAA 61.848 55.000 0.00 0.00 40.86 4.52
2823 2910 1.335324 GCCACAGTCATTTGCAGTGAC 60.335 52.381 20.53 20.53 44.85 3.67
2841 2928 3.489785 GTGACAAGACAGGAACACTAACG 59.510 47.826 0.00 0.00 0.00 3.18
2896 2983 0.256464 TGGGAACACCGTGGAAGTTT 59.744 50.000 3.03 0.00 44.64 2.66
2897 2984 0.666374 GGGAACACCGTGGAAGTTTG 59.334 55.000 3.03 0.00 0.00 2.93
2998 3085 1.445942 ACTGGTGGTGAAGTCGTGG 59.554 57.895 0.00 0.00 0.00 4.94
3000 3087 0.677288 CTGGTGGTGAAGTCGTGGTA 59.323 55.000 0.00 0.00 0.00 3.25
3027 3114 9.822185 GACCAAAATGGAAAGCAAGATATAATT 57.178 29.630 2.85 0.00 40.96 1.40
3033 3120 9.646522 AATGGAAAGCAAGATATAATTGGTACT 57.353 29.630 5.54 0.00 37.39 2.73
3117 3204 5.411669 ACGGCAGGAAACTAAGATTGTTAAG 59.588 40.000 0.00 0.00 40.21 1.85
3252 3339 2.202878 TTCATAGACGGCAGCGGC 60.203 61.111 0.00 0.00 40.13 6.53
3270 3357 0.668535 GCAGTGTTGTTCCCCTTGAC 59.331 55.000 0.00 0.00 0.00 3.18
3299 3386 4.212716 ACTGCCAACATGCTCAATGATAT 58.787 39.130 0.00 0.00 38.72 1.63
3303 3390 5.048294 TGCCAACATGCTCAATGATATCATC 60.048 40.000 18.44 6.90 38.72 2.92
3306 3393 6.402226 CCAACATGCTCAATGATATCATCGAG 60.402 42.308 23.82 23.82 39.69 4.04
3315 3402 7.730084 TCAATGATATCATCGAGACCTTTTCT 58.270 34.615 18.44 0.00 35.10 2.52
3318 3405 6.682746 TGATATCATCGAGACCTTTTCTAGC 58.317 40.000 0.00 0.00 33.22 3.42
3345 3432 2.233922 ACTTCGTACACTATGCCTTGCT 59.766 45.455 0.00 0.00 0.00 3.91
3603 3690 4.061596 CTGAGTTCAGAGAGAAAACACCC 58.938 47.826 2.97 0.00 46.59 4.61
3604 3691 3.454447 TGAGTTCAGAGAGAAAACACCCA 59.546 43.478 0.00 0.00 38.13 4.51
3642 3729 3.390639 TGATTCCCAAAATGCAGGTTTGT 59.609 39.130 19.02 5.83 34.75 2.83
3646 3733 3.068560 CCCAAAATGCAGGTTTGTCATG 58.931 45.455 19.02 8.09 34.75 3.07
3913 4000 3.744942 CACTGAGTGATGCATACATAGCC 59.255 47.826 6.79 0.00 36.35 3.93
3928 4015 3.270027 CATAGCCTTGAAATGTCGTGGA 58.730 45.455 0.00 0.00 0.00 4.02
4059 4147 5.772521 ACATGGTTTGACTTGCTATTGTTC 58.227 37.500 0.00 0.00 0.00 3.18
4069 4157 4.644685 ACTTGCTATTGTTCTGTGGTTTGT 59.355 37.500 0.00 0.00 0.00 2.83
4133 4221 1.584724 ATCTGGTTCCTGGGTAGTGG 58.415 55.000 0.00 0.00 0.00 4.00
4134 4222 0.546747 TCTGGTTCCTGGGTAGTGGG 60.547 60.000 0.00 0.00 0.00 4.61
4135 4223 0.546747 CTGGTTCCTGGGTAGTGGGA 60.547 60.000 0.00 0.00 0.00 4.37
4136 4224 0.838987 TGGTTCCTGGGTAGTGGGAC 60.839 60.000 0.00 0.00 0.00 4.46
4137 4225 0.546988 GGTTCCTGGGTAGTGGGACT 60.547 60.000 0.00 0.00 32.52 3.85
4138 4226 1.273438 GGTTCCTGGGTAGTGGGACTA 60.273 57.143 0.00 0.00 32.52 2.59
4139 4227 2.628829 GGTTCCTGGGTAGTGGGACTAT 60.629 54.545 0.00 0.00 32.65 2.12
4140 4228 2.434702 GTTCCTGGGTAGTGGGACTATG 59.565 54.545 0.00 0.00 32.65 2.23
4141 4229 1.062428 TCCTGGGTAGTGGGACTATGG 60.062 57.143 0.00 0.00 32.65 2.74
4153 4241 1.072965 GGACTATGGGAGGCTCCATTG 59.927 57.143 33.27 24.28 44.55 2.82
4155 4243 3.060479 ACTATGGGAGGCTCCATTGTA 57.940 47.619 33.27 18.15 46.15 2.41
4156 4244 2.975489 ACTATGGGAGGCTCCATTGTAG 59.025 50.000 33.27 26.33 46.15 2.74
4162 4250 3.495806 GGGAGGCTCCATTGTAGAAGATG 60.496 52.174 33.27 0.00 38.64 2.90
4180 4268 8.430801 AGAAGATGATAACTTATGTGTTCTGC 57.569 34.615 0.00 0.00 0.00 4.26
4181 4269 8.043113 AGAAGATGATAACTTATGTGTTCTGCA 58.957 33.333 0.00 0.00 0.00 4.41
4182 4270 8.743085 AAGATGATAACTTATGTGTTCTGCAT 57.257 30.769 0.00 0.00 0.00 3.96
4183 4271 9.836864 AAGATGATAACTTATGTGTTCTGCATA 57.163 29.630 0.00 0.00 0.00 3.14
4184 4272 9.836864 AGATGATAACTTATGTGTTCTGCATAA 57.163 29.630 0.00 0.00 36.72 1.90
4187 4275 9.836864 TGATAACTTATGTGTTCTGCATAATCT 57.163 29.630 0.00 0.00 37.92 2.40
4189 4277 9.836864 ATAACTTATGTGTTCTGCATAATCTGA 57.163 29.630 0.00 0.00 37.92 3.27
4190 4278 8.565896 AACTTATGTGTTCTGCATAATCTGAA 57.434 30.769 0.00 0.00 37.92 3.02
4191 4279 8.743085 ACTTATGTGTTCTGCATAATCTGAAT 57.257 30.769 0.00 0.00 37.92 2.57
4192 4280 9.182214 ACTTATGTGTTCTGCATAATCTGAATT 57.818 29.630 0.00 0.00 37.92 2.17
4195 4283 7.692460 TGTGTTCTGCATAATCTGAATTTCT 57.308 32.000 0.00 0.00 0.00 2.52
4196 4284 7.532571 TGTGTTCTGCATAATCTGAATTTCTG 58.467 34.615 0.00 0.00 0.00 3.02
4197 4285 7.175467 TGTGTTCTGCATAATCTGAATTTCTGT 59.825 33.333 0.00 0.00 0.00 3.41
4198 4286 8.025445 GTGTTCTGCATAATCTGAATTTCTGTT 58.975 33.333 0.00 0.00 0.00 3.16
4199 4287 8.024865 TGTTCTGCATAATCTGAATTTCTGTTG 58.975 33.333 0.00 0.00 0.00 3.33
4200 4288 7.692460 TCTGCATAATCTGAATTTCTGTTGT 57.308 32.000 0.00 0.00 0.00 3.32
4206 4294 9.778993 CATAATCTGAATTTCTGTTGTTGGTAG 57.221 33.333 0.00 0.00 0.00 3.18
4213 4301 3.857157 TCTGTTGTTGGTAGAGCCTTT 57.143 42.857 0.00 0.00 38.35 3.11
4226 4314 6.264518 TGGTAGAGCCTTTTCTAAGTTTTTGG 59.735 38.462 0.00 0.00 38.35 3.28
4302 4395 1.354040 CGAAAGAGAGCGCTGATGTT 58.646 50.000 18.48 5.00 0.00 2.71
4462 4555 5.278858 GCGTGCTTTACAGGTATATCCTACT 60.279 44.000 0.00 0.00 46.24 2.57
4509 4618 3.394940 TCTCCCATCTCACGGTCTACTAT 59.605 47.826 0.00 0.00 0.00 2.12
4556 4665 2.222911 GCTGACAGCTGTTCAACTTCTC 59.777 50.000 22.65 5.07 38.45 2.87
4610 4719 4.025401 GCACTTGCCACCGAACCG 62.025 66.667 0.00 0.00 34.31 4.44
4643 4752 2.189594 TGATGGAGAAAGCACCAGTG 57.810 50.000 0.00 0.00 38.19 3.66
4671 4780 3.882888 GACAGGGAAGTTCATCACAAACA 59.117 43.478 5.01 0.00 0.00 2.83
4673 4782 5.630121 ACAGGGAAGTTCATCACAAACATA 58.370 37.500 5.01 0.00 0.00 2.29
4719 4828 1.461897 CGTTGTACCAATTCACCGTCC 59.538 52.381 0.00 0.00 0.00 4.79
4893 5002 8.925338 TCTTCTAAAGTACTATTCCCTCCATTC 58.075 37.037 0.00 0.00 0.00 2.67
4911 5020 3.750639 TTCGGAAATAAATGACGTGGC 57.249 42.857 0.00 0.00 0.00 5.01
4920 5029 6.811253 AATAAATGACGTGGCTTTAGTTCA 57.189 33.333 0.00 0.00 0.00 3.18
4977 5086 0.098376 CGAACGGAGGGAGTAGAACG 59.902 60.000 0.00 0.00 0.00 3.95
4997 5106 5.523438 ACGAGATAGAGTGGAAGGAAATC 57.477 43.478 0.00 0.00 0.00 2.17
5053 5167 3.196685 GTGAAGAGAGAAGGTAGCATGGT 59.803 47.826 1.62 1.62 0.00 3.55
5060 5174 4.965532 AGAGAAGGTAGCATGGTGATAGTT 59.034 41.667 7.89 0.00 0.00 2.24
5067 5181 9.507329 AAGGTAGCATGGTGATAGTTATAATTG 57.493 33.333 7.89 0.00 0.00 2.32
5090 5204 0.670162 TTTGAGCTGAAGTGCCAAGC 59.330 50.000 0.00 0.00 0.00 4.01
5157 5272 4.541705 TGGTTTTGGGATCTCTGTTTTGA 58.458 39.130 0.00 0.00 0.00 2.69
5161 5276 6.646653 GGTTTTGGGATCTCTGTTTTGATTTC 59.353 38.462 0.00 0.00 0.00 2.17
5162 5277 7.436933 GTTTTGGGATCTCTGTTTTGATTTCT 58.563 34.615 0.00 0.00 0.00 2.52
5163 5278 7.601705 TTTGGGATCTCTGTTTTGATTTCTT 57.398 32.000 0.00 0.00 0.00 2.52
5164 5279 6.579666 TGGGATCTCTGTTTTGATTTCTTG 57.420 37.500 0.00 0.00 0.00 3.02
5165 5280 6.306199 TGGGATCTCTGTTTTGATTTCTTGA 58.694 36.000 0.00 0.00 0.00 3.02
5167 5282 7.452501 TGGGATCTCTGTTTTGATTTCTTGATT 59.547 33.333 0.00 0.00 0.00 2.57
5169 5284 9.351570 GGATCTCTGTTTTGATTTCTTGATTTC 57.648 33.333 0.00 0.00 0.00 2.17
5174 5289 9.874205 TCTGTTTTGATTTCTTGATTTCTTTGT 57.126 25.926 0.00 0.00 0.00 2.83
5185 5300 9.796120 TTCTTGATTTCTTTGTTTTTACGATGT 57.204 25.926 0.00 0.00 0.00 3.06
5186 5301 9.232082 TCTTGATTTCTTTGTTTTTACGATGTG 57.768 29.630 0.00 0.00 0.00 3.21
5187 5302 9.232082 CTTGATTTCTTTGTTTTTACGATGTGA 57.768 29.630 0.00 0.00 0.00 3.58
5188 5303 9.743057 TTGATTTCTTTGTTTTTACGATGTGAT 57.257 25.926 0.00 0.00 0.00 3.06
5189 5304 9.743057 TGATTTCTTTGTTTTTACGATGTGATT 57.257 25.926 0.00 0.00 0.00 2.57
5203 5318 7.303634 ACGATGTGATTAACTTATGTGTTCC 57.696 36.000 0.00 0.00 0.00 3.62
5204 5319 7.103641 ACGATGTGATTAACTTATGTGTTCCT 58.896 34.615 0.00 0.00 0.00 3.36
5205 5320 7.064609 ACGATGTGATTAACTTATGTGTTCCTG 59.935 37.037 0.00 0.00 0.00 3.86
5206 5321 7.465916 CGATGTGATTAACTTATGTGTTCCTGG 60.466 40.741 0.00 0.00 0.00 4.45
5207 5322 5.943416 TGTGATTAACTTATGTGTTCCTGGG 59.057 40.000 0.00 0.00 0.00 4.45
5208 5323 5.944007 GTGATTAACTTATGTGTTCCTGGGT 59.056 40.000 0.00 0.00 0.00 4.51
5209 5324 7.107542 GTGATTAACTTATGTGTTCCTGGGTA 58.892 38.462 0.00 0.00 0.00 3.69
5210 5325 7.280205 GTGATTAACTTATGTGTTCCTGGGTAG 59.720 40.741 0.00 0.00 0.00 3.18
5211 5326 6.691255 TTAACTTATGTGTTCCTGGGTAGT 57.309 37.500 0.00 0.00 0.00 2.73
5212 5327 4.553330 ACTTATGTGTTCCTGGGTAGTG 57.447 45.455 0.00 0.00 0.00 2.74
5213 5328 3.263425 ACTTATGTGTTCCTGGGTAGTGG 59.737 47.826 0.00 0.00 0.00 4.00
5214 5329 0.991920 ATGTGTTCCTGGGTAGTGGG 59.008 55.000 0.00 0.00 0.00 4.61
5215 5330 0.104882 TGTGTTCCTGGGTAGTGGGA 60.105 55.000 0.00 0.00 0.00 4.37
5216 5331 0.323957 GTGTTCCTGGGTAGTGGGAC 59.676 60.000 0.00 0.00 32.54 4.46
5217 5332 0.192566 TGTTCCTGGGTAGTGGGACT 59.807 55.000 0.00 0.00 33.10 3.85
5218 5333 1.433985 TGTTCCTGGGTAGTGGGACTA 59.566 52.381 0.00 0.00 33.10 2.59
5219 5334 2.045326 TGTTCCTGGGTAGTGGGACTAT 59.955 50.000 0.00 0.00 32.65 2.12
5220 5335 2.434702 GTTCCTGGGTAGTGGGACTATG 59.565 54.545 0.00 0.00 32.65 2.23
5221 5336 1.062428 TCCTGGGTAGTGGGACTATGG 60.062 57.143 0.00 0.00 32.65 2.74
5222 5337 1.424638 CTGGGTAGTGGGACTATGGG 58.575 60.000 0.00 0.00 32.65 4.00
5300 5416 2.993899 CGTAGGTGTTCAATGAGGTCAC 59.006 50.000 6.71 6.71 0.00 3.67
5382 5498 1.594293 CGTTCTCACCGGCACTGTT 60.594 57.895 0.00 0.00 0.00 3.16
5490 5606 0.114954 TTGGCTTCCTTGGAATGCCT 59.885 50.000 26.97 0.00 43.57 4.75
5528 5644 4.116747 AGCTCATTTCTGTAGAACCTCG 57.883 45.455 0.00 0.00 33.13 4.63
5538 5654 4.023107 TCTGTAGAACCTCGTGAAGAACAG 60.023 45.833 0.00 0.00 34.54 3.16
5564 5680 6.393171 ACGGTTATGGAAAGTTGTAGACTAC 58.607 40.000 5.62 5.62 37.72 2.73
5572 5688 6.260050 TGGAAAGTTGTAGACTACAGCAAAAG 59.740 38.462 25.55 0.00 41.62 2.27
5577 5693 7.217200 AGTTGTAGACTACAGCAAAAGATCAA 58.783 34.615 25.55 2.38 41.62 2.57
5587 5781 7.375106 ACAGCAAAAGATCAACAATCTAGAG 57.625 36.000 0.00 0.00 44.26 2.43
5590 5784 7.118825 CAGCAAAAGATCAACAATCTAGAGTCA 59.881 37.037 0.00 0.00 44.26 3.41
5596 5790 9.598517 AAGATCAACAATCTAGAGTCAAAGATC 57.401 33.333 8.09 7.09 44.26 2.75
5597 5791 8.756927 AGATCAACAATCTAGAGTCAAAGATCA 58.243 33.333 18.18 0.00 43.17 2.92
5603 5797 6.611613 ATCTAGAGTCAAAGATCAACACCA 57.388 37.500 0.00 0.00 0.00 4.17
5661 5857 0.818445 GCCCCAGATCAGACATGCAG 60.818 60.000 0.00 0.00 0.00 4.41
5679 5875 2.430465 CAGTGCAGATTAACCAGCTGT 58.570 47.619 13.81 0.00 32.39 4.40
5680 5876 2.417933 CAGTGCAGATTAACCAGCTGTC 59.582 50.000 13.81 2.81 32.39 3.51
5681 5877 2.304180 AGTGCAGATTAACCAGCTGTCT 59.696 45.455 13.81 5.41 32.39 3.41
5741 5939 6.844696 ATAACTTCATACAAGTATGGCACG 57.155 37.500 17.49 8.21 42.32 5.34
5742 5940 4.202245 ACTTCATACAAGTATGGCACGT 57.798 40.909 17.49 8.70 42.32 4.49
5749 5947 6.311935 TCATACAAGTATGGCACGTTAACTTC 59.688 38.462 17.49 0.00 42.32 3.01
5751 5949 3.308438 AGTATGGCACGTTAACTTCGT 57.692 42.857 3.71 0.00 42.33 3.85
5753 5951 4.418392 AGTATGGCACGTTAACTTCGTAG 58.582 43.478 3.71 0.00 39.55 3.51
5756 5954 3.564511 TGGCACGTTAACTTCGTAGTAC 58.435 45.455 3.71 0.00 39.55 2.73
5757 5955 3.004210 TGGCACGTTAACTTCGTAGTACA 59.996 43.478 3.71 0.00 39.55 2.90
5774 5976 5.578157 AGTACAAGGTTTCAATGTAGGGT 57.422 39.130 0.00 0.00 30.70 4.34
5781 5983 4.595781 AGGTTTCAATGTAGGGTGTAGACA 59.404 41.667 0.00 0.00 0.00 3.41
5792 6251 3.228453 GGGTGTAGACATCCCGAGATTA 58.772 50.000 0.00 0.00 41.30 1.75
5838 6297 7.707624 ACACCAATGATTACAGTGATTCATT 57.292 32.000 0.00 5.71 43.54 2.57
5839 6298 7.765307 ACACCAATGATTACAGTGATTCATTC 58.235 34.615 13.32 0.00 43.54 2.67
5840 6299 7.394077 ACACCAATGATTACAGTGATTCATTCA 59.606 33.333 13.32 2.76 43.54 2.57
5841 6300 8.245491 CACCAATGATTACAGTGATTCATTCAA 58.755 33.333 13.32 0.00 43.54 2.69
5904 6364 8.867935 GCTTAATGCTCATACAGTACATATCAG 58.132 37.037 0.00 0.00 38.95 2.90
5905 6365 9.363763 CTTAATGCTCATACAGTACATATCAGG 57.636 37.037 0.00 0.00 0.00 3.86
5911 6371 7.470702 GCTCATACAGTACATATCAGGTGTTCT 60.471 40.741 0.00 0.00 0.00 3.01
5914 6374 9.067986 CATACAGTACATATCAGGTGTTCTAGA 57.932 37.037 0.00 0.00 0.00 2.43
5922 6382 9.770097 ACATATCAGGTGTTCTAGAAACATATG 57.230 33.333 6.78 15.90 32.23 1.78
5923 6383 9.212641 CATATCAGGTGTTCTAGAAACATATGG 57.787 37.037 6.78 0.00 32.23 2.74
5925 6385 5.487488 TCAGGTGTTCTAGAAACATATGGGT 59.513 40.000 6.78 0.00 32.23 4.51
5927 6387 6.094048 CAGGTGTTCTAGAAACATATGGGTTG 59.906 42.308 6.78 0.00 32.23 3.77
5928 6388 5.163652 GGTGTTCTAGAAACATATGGGTTGC 60.164 44.000 6.78 0.00 32.23 4.17
5930 6390 4.164843 TCTAGAAACATATGGGTTGCCC 57.835 45.455 7.80 0.00 45.71 5.36
5932 6392 3.473113 AGAAACATATGGGTTGCCCTT 57.527 42.857 7.80 1.88 45.70 3.95
5934 6394 4.941713 AGAAACATATGGGTTGCCCTTTA 58.058 39.130 7.80 0.00 45.70 1.85
5935 6395 4.709886 AGAAACATATGGGTTGCCCTTTAC 59.290 41.667 7.80 0.00 45.70 2.01
5936 6396 4.331159 AACATATGGGTTGCCCTTTACT 57.669 40.909 7.80 0.00 45.70 2.24
5937 6397 3.631250 ACATATGGGTTGCCCTTTACTG 58.369 45.455 7.80 1.84 45.70 2.74
5938 6398 3.268334 ACATATGGGTTGCCCTTTACTGA 59.732 43.478 7.80 0.00 45.70 3.41
5940 6400 2.214376 TGGGTTGCCCTTTACTGATG 57.786 50.000 5.73 0.00 45.70 3.07
5942 6402 0.817654 GGTTGCCCTTTACTGATGGC 59.182 55.000 0.00 0.00 44.27 4.40
5944 6404 3.111038 GCCCTTTACTGATGGCGC 58.889 61.111 0.00 0.00 33.59 6.53
5945 6405 1.748879 GCCCTTTACTGATGGCGCA 60.749 57.895 10.83 0.00 33.59 6.09
5946 6406 1.718757 GCCCTTTACTGATGGCGCAG 61.719 60.000 10.83 0.00 41.63 5.18
5966 6426 5.515982 CGCAGCTATTTGATTTGTGCAATTA 59.484 36.000 0.00 0.00 0.00 1.40
5971 6431 7.975616 AGCTATTTGATTTGTGCAATTAACGAT 59.024 29.630 0.00 0.00 0.00 3.73
5980 6440 6.252967 TGTGCAATTAACGATTTCTGTCAT 57.747 33.333 0.00 0.00 0.00 3.06
6003 6464 3.912496 AGATACCATACACAGCTGCAA 57.088 42.857 15.27 0.00 0.00 4.08
6020 6498 5.047092 AGCTGCAACAAAATACTTTGCCTAT 60.047 36.000 1.02 0.00 44.96 2.57
6025 6503 6.237463 GCAACAAAATACTTTGCCTATAACGC 60.237 38.462 0.00 0.00 44.96 4.84
6033 6511 1.298602 TGCCTATAACGCACTGCATG 58.701 50.000 1.11 0.00 0.00 4.06
6109 6587 7.749666 AGAAACCAACTGCCATATATCTACAT 58.250 34.615 0.00 0.00 0.00 2.29
6110 6588 7.663081 AGAAACCAACTGCCATATATCTACATG 59.337 37.037 0.00 0.00 0.00 3.21
6111 6589 5.248640 ACCAACTGCCATATATCTACATGC 58.751 41.667 0.00 0.00 0.00 4.06
6112 6590 4.637534 CCAACTGCCATATATCTACATGCC 59.362 45.833 0.00 0.00 0.00 4.40
6114 6592 5.095145 ACTGCCATATATCTACATGCCAG 57.905 43.478 0.00 0.00 34.62 4.85
6115 6593 4.080695 ACTGCCATATATCTACATGCCAGG 60.081 45.833 0.00 0.00 33.16 4.45
6116 6594 3.200605 TGCCATATATCTACATGCCAGGG 59.799 47.826 0.00 0.00 0.00 4.45
6145 6631 4.463186 GCCATATATCAACGTACTCCCTCT 59.537 45.833 0.00 0.00 0.00 3.69
6150 6636 1.891150 TCAACGTACTCCCTCTGTTCC 59.109 52.381 0.00 0.00 0.00 3.62
6164 6650 4.235360 CTCTGTTCCGAATTACTTGTCGT 58.765 43.478 0.00 0.00 35.48 4.34
6166 6652 5.396484 TCTGTTCCGAATTACTTGTCGTAG 58.604 41.667 0.00 0.00 35.48 3.51
6167 6653 4.487948 TGTTCCGAATTACTTGTCGTAGG 58.512 43.478 0.00 0.00 35.48 3.18
6168 6654 4.022068 TGTTCCGAATTACTTGTCGTAGGT 60.022 41.667 0.00 0.00 35.48 3.08
6185 6671 8.765517 TGTCGTAGGTATGGATGTATCTAGATA 58.234 37.037 8.44 8.44 0.00 1.98
6215 6701 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
6217 6703 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
6219 6705 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
6227 6713 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
6228 6714 5.412640 TCCATTTCTGCGACGAGTAATTTA 58.587 37.500 0.00 0.00 0.00 1.40
6281 6776 1.982395 CCCCGTCACCAGTCAGCTA 60.982 63.158 0.00 0.00 0.00 3.32
6365 6860 3.624410 TCTGCATTGAACCTTCATCATCG 59.376 43.478 0.00 0.00 37.00 3.84
6405 6903 2.300152 TGCCTGTCGATCTCAAAGAAGT 59.700 45.455 0.00 0.00 0.00 3.01
6409 6907 5.233988 CCTGTCGATCTCAAAGAAGTTCTT 58.766 41.667 12.50 12.50 38.59 2.52
6542 7043 2.357881 CTCTGCAGCGCCAACTGA 60.358 61.111 9.47 2.38 40.25 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 3.012518 CAAGTGGAAATCCGAATGCTCT 58.987 45.455 0.00 0.00 39.43 4.09
102 103 1.469767 GCCAAGTGGAAATCCGAATGC 60.470 52.381 0.18 0.00 39.43 3.56
191 192 6.624352 ACATAACTGTTAAGCATATGGCAG 57.376 37.500 4.56 0.00 37.35 4.85
206 207 3.052036 GCAACAGGCAACAACATAACTG 58.948 45.455 0.00 0.00 43.97 3.16
223 224 1.211743 GGCAGAAGCACAAAAGCAAC 58.788 50.000 0.00 0.00 44.61 4.17
247 248 8.646900 TCAAAATAGGCATATATGGAAAAACCC 58.353 33.333 14.51 5.18 38.00 4.11
248 249 9.476202 GTCAAAATAGGCATATATGGAAAAACC 57.524 33.333 14.51 5.86 39.54 3.27
251 252 9.077885 GGAGTCAAAATAGGCATATATGGAAAA 57.922 33.333 14.51 0.00 0.00 2.29
294 295 5.043248 CCATTCAAGCGAACTGTTCTTTTT 58.957 37.500 17.60 7.01 32.81 1.94
295 296 4.338118 TCCATTCAAGCGAACTGTTCTTTT 59.662 37.500 17.60 9.22 32.81 2.27
296 297 3.882888 TCCATTCAAGCGAACTGTTCTTT 59.117 39.130 17.60 9.54 32.81 2.52
297 298 3.476552 TCCATTCAAGCGAACTGTTCTT 58.523 40.909 17.60 4.30 32.81 2.52
298 299 3.070018 CTCCATTCAAGCGAACTGTTCT 58.930 45.455 17.60 0.00 32.81 3.01
299 300 3.067106 TCTCCATTCAAGCGAACTGTTC 58.933 45.455 10.48 10.48 32.81 3.18
302 303 2.693069 ACTCTCCATTCAAGCGAACTG 58.307 47.619 0.00 0.00 32.81 3.16
311 316 6.205464 GTCTGTTTCAATGAACTCTCCATTCA 59.795 38.462 0.00 0.00 40.25 2.57
318 323 8.317679 AGCTAATAGTCTGTTTCAATGAACTCT 58.682 33.333 0.00 0.00 0.00 3.24
319 324 8.485976 AGCTAATAGTCTGTTTCAATGAACTC 57.514 34.615 0.00 0.00 0.00 3.01
367 373 5.584251 CCTGTTCATCTCTTCTCTAAAAGGC 59.416 44.000 0.00 0.00 0.00 4.35
443 449 0.384309 TAGTAGAGCATGGCCGTTCG 59.616 55.000 0.00 0.00 0.00 3.95
466 472 3.783362 TTCTTGGGCGTGGGTGTGG 62.783 63.158 0.00 0.00 0.00 4.17
565 571 3.476552 CCTACAAAACTTGTGGCTCTGA 58.523 45.455 2.30 0.00 45.03 3.27
597 603 2.290641 GTCTGGGTTCACAACATGTCAC 59.709 50.000 0.00 0.00 0.00 3.67
611 617 3.105283 GTCTATAACTGGGTGTCTGGGT 58.895 50.000 0.00 0.00 0.00 4.51
698 704 3.168963 TCTTTCGCGACGATTAACTCAG 58.831 45.455 9.15 0.00 35.23 3.35
737 745 0.704664 ACCCCTGGAACTCCATTTCC 59.295 55.000 0.00 0.00 46.46 3.13
749 757 3.951563 TTTCATCCAATCTACCCCTGG 57.048 47.619 0.00 0.00 0.00 4.45
771 803 7.094592 TGTCCAAATAGTTGCACGAAATCATTA 60.095 33.333 0.00 0.00 26.81 1.90
772 804 6.092748 GTCCAAATAGTTGCACGAAATCATT 58.907 36.000 0.00 0.00 33.01 2.57
790 822 1.909986 TCACCGGGTATCATGTCCAAA 59.090 47.619 6.32 0.00 0.00 3.28
843 875 1.126488 GACTCAGATGCATCAGGGGA 58.874 55.000 27.81 17.24 0.00 4.81
901 935 6.267242 TCACCTGAAAAATCATCCATTGTTCA 59.733 34.615 1.04 1.04 43.75 3.18
907 941 7.543359 TTCTTTCACCTGAAAAATCATCCAT 57.457 32.000 2.25 0.00 42.72 3.41
908 942 6.975196 TTCTTTCACCTGAAAAATCATCCA 57.025 33.333 2.25 0.00 42.72 3.41
944 1002 5.393352 GCATTTGACACAGATATTTGCCAGA 60.393 40.000 0.00 0.00 0.00 3.86
949 1007 6.094464 TCTCCAGCATTTGACACAGATATTTG 59.906 38.462 0.00 0.00 0.00 2.32
970 1028 6.436261 TGATATCTTCGATTTACGTGTCTCC 58.564 40.000 0.00 0.00 43.13 3.71
983 1041 5.906073 TGTGCATCTTTCTGATATCTTCGA 58.094 37.500 3.98 0.00 33.36 3.71
1239 1297 2.739671 GGGGGTCGTACACGTTGC 60.740 66.667 1.19 0.00 40.80 4.17
1265 1323 6.326375 GCAATAATCTATCTGACGAGGTAGG 58.674 44.000 0.00 0.00 34.07 3.18
1315 1389 0.743097 GCTGAGGGCATGGATTGTTC 59.257 55.000 0.00 0.00 41.35 3.18
1352 1426 6.272318 CAACTAGAGAAGCATCCAAGTCTAG 58.728 44.000 9.97 9.97 39.51 2.43
1397 1481 3.753815 TGCACTTGTCCAAATGAGATGA 58.246 40.909 0.00 0.00 0.00 2.92
1401 1485 2.620115 ACACTGCACTTGTCCAAATGAG 59.380 45.455 0.00 0.00 0.00 2.90
1456 1540 4.744631 TGCAGTACATATACAGCATTCGTG 59.255 41.667 0.00 0.00 45.71 4.35
1581 1665 1.447317 AAGTGCGGCACAACTTGAGG 61.447 55.000 32.29 0.00 36.74 3.86
1811 1898 1.336332 CGGCGATCCCATCTAACTGAG 60.336 57.143 0.00 0.00 0.00 3.35
1812 1899 0.673985 CGGCGATCCCATCTAACTGA 59.326 55.000 0.00 0.00 0.00 3.41
1830 1917 2.209076 CGACGTCGCTAGCTTGTCG 61.209 63.158 26.59 27.01 45.06 4.35
1868 1955 4.069232 CCAAGAGGTCCTCGCGCA 62.069 66.667 13.41 0.00 35.36 6.09
1894 1981 9.503427 GAACTTGTTTACACCATATATTTGCTC 57.497 33.333 0.00 0.00 0.00 4.26
1897 1984 8.181573 AGCGAACTTGTTTACACCATATATTTG 58.818 33.333 0.00 0.00 0.00 2.32
1902 1989 5.242434 TCAGCGAACTTGTTTACACCATAT 58.758 37.500 0.00 0.00 0.00 1.78
1908 1995 2.800544 GCTCTCAGCGAACTTGTTTACA 59.199 45.455 0.00 0.00 0.00 2.41
1962 2049 0.249911 GGGTAGTATCTTGCAGGGCG 60.250 60.000 0.00 0.00 0.00 6.13
1965 2052 5.808366 TTATCAGGGTAGTATCTTGCAGG 57.192 43.478 0.00 0.00 0.00 4.85
1980 2067 3.004419 CACATGCAGCAAGGATTATCAGG 59.996 47.826 0.00 0.00 0.00 3.86
2207 2294 6.726299 ACCGGGAAGAAGATCATCTATCAATA 59.274 38.462 6.32 0.00 37.03 1.90
2235 2322 2.637382 TCCAACAGCTAGATGGACAACA 59.363 45.455 13.45 0.00 43.51 3.33
2277 2364 4.335594 AGAGAAAACCCAGAAACAAAGACG 59.664 41.667 0.00 0.00 0.00 4.18
2280 2367 5.582689 ACAGAGAAAACCCAGAAACAAAG 57.417 39.130 0.00 0.00 0.00 2.77
2284 2371 3.381590 AGCAACAGAGAAAACCCAGAAAC 59.618 43.478 0.00 0.00 0.00 2.78
2289 2376 1.214175 TCCAGCAACAGAGAAAACCCA 59.786 47.619 0.00 0.00 0.00 4.51
2526 2613 3.291809 AAAAACAGGCCGATTTTACCG 57.708 42.857 17.23 0.00 28.66 4.02
2709 2796 1.375268 GAGGCTCAGTGTGACTGCC 60.375 63.158 10.25 5.64 45.54 4.85
2727 2814 2.245159 TCTTCTCCATTGCATAGGCG 57.755 50.000 0.00 0.00 45.35 5.52
2775 2862 0.322456 TAGTTTCGCAGGCAGCCAAT 60.322 50.000 15.80 0.00 41.38 3.16
2823 2910 3.057734 GGACGTTAGTGTTCCTGTCTTG 58.942 50.000 0.00 0.00 0.00 3.02
2841 2928 1.806542 ACAACAGTCATGCGATTGGAC 59.193 47.619 0.00 0.00 33.33 4.02
2908 2995 7.740805 AGTTCTGAAGACAAACTAGAAGGAAT 58.259 34.615 0.00 0.00 31.68 3.01
2998 3085 5.705609 TCTTGCTTTCCATTTTGGTCTAC 57.294 39.130 0.00 0.00 39.03 2.59
3000 3087 8.593945 TTATATCTTGCTTTCCATTTTGGTCT 57.406 30.769 0.00 0.00 39.03 3.85
3033 3120 1.629043 ACAAAGCTGTCTCGGTAGGA 58.371 50.000 0.00 0.00 0.00 2.94
3117 3204 6.584185 TTTACTGAATTAAAAGGCTCCACC 57.416 37.500 0.00 0.00 39.61 4.61
3205 3292 4.202441 CAGGCAGCCAATACTATTTCTGT 58.798 43.478 15.80 0.00 0.00 3.41
3252 3339 2.051334 TGTCAAGGGGAACAACACTG 57.949 50.000 0.00 0.00 0.00 3.66
3270 3357 3.054878 GAGCATGTTGGCAGTTTTCTTG 58.945 45.455 0.00 0.00 35.83 3.02
3299 3386 3.014623 TCGCTAGAAAAGGTCTCGATGA 58.985 45.455 0.00 0.00 37.84 2.92
3303 3390 1.921230 GCTTCGCTAGAAAAGGTCTCG 59.079 52.381 0.00 0.00 37.84 4.04
3306 3393 2.689646 AGTGCTTCGCTAGAAAAGGTC 58.310 47.619 0.00 0.00 35.71 3.85
3328 3415 3.517602 TGTAAGCAAGGCATAGTGTACG 58.482 45.455 0.00 0.00 0.00 3.67
3330 3417 3.118408 CCCTGTAAGCAAGGCATAGTGTA 60.118 47.826 0.00 0.00 0.00 2.90
3345 3432 2.091885 GCCATCTTCCAATCCCCTGTAA 60.092 50.000 0.00 0.00 0.00 2.41
3603 3690 4.155644 GGAATCAGCTCAAGGAGTTCTTTG 59.844 45.833 0.00 0.00 32.41 2.77
3604 3691 4.331108 GGAATCAGCTCAAGGAGTTCTTT 58.669 43.478 0.00 0.00 32.41 2.52
3642 3729 3.696051 GCCAAGATAAAACAGAGGCATGA 59.304 43.478 0.00 0.00 40.29 3.07
3646 3733 4.488879 CAAAGCCAAGATAAAACAGAGGC 58.511 43.478 0.00 0.00 40.85 4.70
4038 4126 5.536161 ACAGAACAATAGCAAGTCAAACCAT 59.464 36.000 0.00 0.00 0.00 3.55
4059 4147 7.276218 CCAGCAAATAATATTGACAAACCACAG 59.724 37.037 0.00 0.00 31.84 3.66
4129 4217 0.399233 GAGCCTCCCATAGTCCCACT 60.399 60.000 0.00 0.00 0.00 4.00
4133 4221 1.072965 CAATGGAGCCTCCCATAGTCC 59.927 57.143 8.62 0.00 45.69 3.85
4134 4222 1.771255 ACAATGGAGCCTCCCATAGTC 59.229 52.381 8.62 0.00 45.69 2.59
4135 4223 1.898863 ACAATGGAGCCTCCCATAGT 58.101 50.000 8.62 0.00 45.69 2.12
4136 4224 3.242867 TCTACAATGGAGCCTCCCATAG 58.757 50.000 8.62 4.98 45.69 2.23
4137 4225 3.344535 TCTACAATGGAGCCTCCCATA 57.655 47.619 8.62 0.00 45.69 2.74
4139 4227 1.839994 CTTCTACAATGGAGCCTCCCA 59.160 52.381 8.62 0.00 41.05 4.37
4140 4228 2.119495 TCTTCTACAATGGAGCCTCCC 58.881 52.381 8.62 0.00 35.03 4.30
4141 4229 3.389329 TCATCTTCTACAATGGAGCCTCC 59.611 47.826 2.98 2.98 36.96 4.30
4155 4243 8.043113 TGCAGAACACATAAGTTATCATCTTCT 58.957 33.333 0.00 0.00 0.00 2.85
4156 4244 8.201554 TGCAGAACACATAAGTTATCATCTTC 57.798 34.615 0.00 0.00 0.00 2.87
4174 4262 8.025445 ACAACAGAAATTCAGATTATGCAGAAC 58.975 33.333 0.00 0.00 0.00 3.01
4176 4264 7.692460 ACAACAGAAATTCAGATTATGCAGA 57.308 32.000 0.00 0.00 0.00 4.26
4177 4265 7.274904 CCAACAACAGAAATTCAGATTATGCAG 59.725 37.037 0.00 0.00 0.00 4.41
4178 4266 7.092079 CCAACAACAGAAATTCAGATTATGCA 58.908 34.615 0.00 0.00 0.00 3.96
4179 4267 7.092716 ACCAACAACAGAAATTCAGATTATGC 58.907 34.615 0.00 0.00 0.00 3.14
4180 4268 9.778993 CTACCAACAACAGAAATTCAGATTATG 57.221 33.333 0.00 0.00 0.00 1.90
4181 4269 9.739276 TCTACCAACAACAGAAATTCAGATTAT 57.261 29.630 0.00 0.00 0.00 1.28
4182 4270 9.219603 CTCTACCAACAACAGAAATTCAGATTA 57.780 33.333 0.00 0.00 0.00 1.75
4183 4271 7.308830 GCTCTACCAACAACAGAAATTCAGATT 60.309 37.037 0.00 0.00 0.00 2.40
4184 4272 6.150140 GCTCTACCAACAACAGAAATTCAGAT 59.850 38.462 0.00 0.00 0.00 2.90
4185 4273 5.470098 GCTCTACCAACAACAGAAATTCAGA 59.530 40.000 0.00 0.00 0.00 3.27
4186 4274 5.335191 GGCTCTACCAACAACAGAAATTCAG 60.335 44.000 0.00 0.00 38.86 3.02
4187 4275 4.518970 GGCTCTACCAACAACAGAAATTCA 59.481 41.667 0.00 0.00 38.86 2.57
4188 4276 4.762251 AGGCTCTACCAACAACAGAAATTC 59.238 41.667 0.00 0.00 43.14 2.17
4189 4277 4.729868 AGGCTCTACCAACAACAGAAATT 58.270 39.130 0.00 0.00 43.14 1.82
4190 4278 4.373156 AGGCTCTACCAACAACAGAAAT 57.627 40.909 0.00 0.00 43.14 2.17
4191 4279 3.857157 AGGCTCTACCAACAACAGAAA 57.143 42.857 0.00 0.00 43.14 2.52
4192 4280 3.857157 AAGGCTCTACCAACAACAGAA 57.143 42.857 0.00 0.00 43.14 3.02
4193 4281 3.857157 AAAGGCTCTACCAACAACAGA 57.143 42.857 0.00 0.00 43.14 3.41
4194 4282 4.137543 AGAAAAGGCTCTACCAACAACAG 58.862 43.478 0.00 0.00 43.14 3.16
4195 4283 4.164843 AGAAAAGGCTCTACCAACAACA 57.835 40.909 0.00 0.00 43.14 3.33
4196 4284 5.763698 ACTTAGAAAAGGCTCTACCAACAAC 59.236 40.000 0.00 0.00 43.14 3.32
4197 4285 5.937111 ACTTAGAAAAGGCTCTACCAACAA 58.063 37.500 0.00 0.00 43.14 2.83
4198 4286 5.562298 ACTTAGAAAAGGCTCTACCAACA 57.438 39.130 0.00 0.00 43.14 3.33
4199 4287 6.879276 AAACTTAGAAAAGGCTCTACCAAC 57.121 37.500 0.00 0.00 43.14 3.77
4200 4288 7.201875 CCAAAAACTTAGAAAAGGCTCTACCAA 60.202 37.037 0.00 0.00 43.14 3.67
4206 4294 4.944048 TGCCAAAAACTTAGAAAAGGCTC 58.056 39.130 0.00 0.00 41.33 4.70
4213 4301 4.953940 AATGCCTGCCAAAAACTTAGAA 57.046 36.364 0.00 0.00 0.00 2.10
4260 4348 2.032549 CACCTGCGTAAATGCATAGAGC 60.033 50.000 0.00 4.49 45.26 4.09
4261 4349 2.545526 CCACCTGCGTAAATGCATAGAG 59.454 50.000 0.00 0.00 45.26 2.43
4262 4350 2.560504 CCACCTGCGTAAATGCATAGA 58.439 47.619 0.00 0.00 45.26 1.98
4263 4351 1.002468 GCCACCTGCGTAAATGCATAG 60.002 52.381 0.00 0.00 45.26 2.23
4302 4395 5.233083 AGAAGTTGTCATCCAGAATCACA 57.767 39.130 0.00 0.00 0.00 3.58
4485 4594 1.032657 AGACCGTGAGATGGGAGACG 61.033 60.000 0.00 0.00 0.00 4.18
4509 4618 3.495629 GCATCTCCTGGCATGAGATTACA 60.496 47.826 26.41 6.57 45.07 2.41
4544 4653 3.054728 TGTTGACCCAGAGAAGTTGAACA 60.055 43.478 0.00 0.00 0.00 3.18
4556 4665 2.947652 GTCCATGATCATGTTGACCCAG 59.052 50.000 29.23 14.52 37.11 4.45
4610 4719 6.861065 TTCTCCATCAAATTATCGTTAGGC 57.139 37.500 0.00 0.00 0.00 3.93
4622 4731 2.886523 CACTGGTGCTTTCTCCATCAAA 59.113 45.455 0.00 0.00 35.53 2.69
4643 4752 1.064825 TGAACTTCCCTGTCCTTCCC 58.935 55.000 0.00 0.00 0.00 3.97
4671 4780 5.517299 GCCCCAGAATATTCCTCCACATTAT 60.517 44.000 11.92 0.00 0.00 1.28
4673 4782 3.437052 GCCCCAGAATATTCCTCCACATT 60.437 47.826 11.92 0.00 0.00 2.71
4719 4828 5.422331 TCCCTTGACTTTGTAGATACCAGAG 59.578 44.000 0.00 0.00 0.00 3.35
4893 5002 3.757745 AAGCCACGTCATTTATTTCCG 57.242 42.857 0.00 0.00 0.00 4.30
4920 5029 8.585436 CGTGGTTTTACGTTTTAGTTCAAATTT 58.415 29.630 0.00 0.00 39.13 1.82
4950 5059 2.167900 ACTCCCTCCGTTCGGAAATAAG 59.832 50.000 14.79 11.60 33.41 1.73
4951 5060 2.181975 ACTCCCTCCGTTCGGAAATAA 58.818 47.619 14.79 1.25 33.41 1.40
4977 5086 5.163499 ACACGATTTCCTTCCACTCTATCTC 60.163 44.000 0.00 0.00 0.00 2.75
4997 5106 6.643360 TGATAATATTCAACCCATACGACACG 59.357 38.462 0.00 0.00 0.00 4.49
5060 5174 8.405531 GGCACTTCAGCTCAAATAACAATTATA 58.594 33.333 0.00 0.00 34.17 0.98
5067 5181 4.479619 CTTGGCACTTCAGCTCAAATAAC 58.520 43.478 0.00 0.00 34.17 1.89
5090 5204 5.220739 CCTCTGCAAGAAATTATCCACTTCG 60.221 44.000 0.00 0.00 46.34 3.79
5161 5276 9.232082 TCACATCGTAAAAACAAAGAAATCAAG 57.768 29.630 0.00 0.00 0.00 3.02
5162 5277 9.743057 ATCACATCGTAAAAACAAAGAAATCAA 57.257 25.926 0.00 0.00 0.00 2.57
5163 5278 9.743057 AATCACATCGTAAAAACAAAGAAATCA 57.257 25.926 0.00 0.00 0.00 2.57
5177 5292 8.875803 GGAACACATAAGTTAATCACATCGTAA 58.124 33.333 0.00 0.00 0.00 3.18
5178 5293 8.255206 AGGAACACATAAGTTAATCACATCGTA 58.745 33.333 0.00 0.00 0.00 3.43
5179 5294 7.064609 CAGGAACACATAAGTTAATCACATCGT 59.935 37.037 0.00 0.00 0.00 3.73
5181 5296 7.201732 CCCAGGAACACATAAGTTAATCACATC 60.202 40.741 0.00 0.00 0.00 3.06
5183 5298 5.943416 CCCAGGAACACATAAGTTAATCACA 59.057 40.000 0.00 0.00 0.00 3.58
5184 5299 5.944007 ACCCAGGAACACATAAGTTAATCAC 59.056 40.000 0.00 0.00 0.00 3.06
5185 5300 6.134535 ACCCAGGAACACATAAGTTAATCA 57.865 37.500 0.00 0.00 0.00 2.57
5186 5301 7.280205 CACTACCCAGGAACACATAAGTTAATC 59.720 40.741 0.00 0.00 0.00 1.75
5187 5302 7.110155 CACTACCCAGGAACACATAAGTTAAT 58.890 38.462 0.00 0.00 0.00 1.40
5188 5303 6.469410 CACTACCCAGGAACACATAAGTTAA 58.531 40.000 0.00 0.00 0.00 2.01
5189 5304 5.046159 CCACTACCCAGGAACACATAAGTTA 60.046 44.000 0.00 0.00 0.00 2.24
5190 5305 4.263331 CCACTACCCAGGAACACATAAGTT 60.263 45.833 0.00 0.00 0.00 2.66
5191 5306 3.263425 CCACTACCCAGGAACACATAAGT 59.737 47.826 0.00 0.00 0.00 2.24
5192 5307 3.370527 CCCACTACCCAGGAACACATAAG 60.371 52.174 0.00 0.00 0.00 1.73
5193 5308 2.574369 CCCACTACCCAGGAACACATAA 59.426 50.000 0.00 0.00 0.00 1.90
5194 5309 2.193127 CCCACTACCCAGGAACACATA 58.807 52.381 0.00 0.00 0.00 2.29
5195 5310 0.991920 CCCACTACCCAGGAACACAT 59.008 55.000 0.00 0.00 0.00 3.21
5196 5311 0.104882 TCCCACTACCCAGGAACACA 60.105 55.000 0.00 0.00 0.00 3.72
5197 5312 0.323957 GTCCCACTACCCAGGAACAC 59.676 60.000 0.00 0.00 0.00 3.32
5198 5313 0.192566 AGTCCCACTACCCAGGAACA 59.807 55.000 0.00 0.00 0.00 3.18
5199 5314 2.242882 TAGTCCCACTACCCAGGAAC 57.757 55.000 0.00 0.00 0.00 3.62
5200 5315 2.628559 CCATAGTCCCACTACCCAGGAA 60.629 54.545 0.00 0.00 32.84 3.36
5201 5316 1.062428 CCATAGTCCCACTACCCAGGA 60.062 57.143 0.00 0.00 32.84 3.86
5202 5317 1.424638 CCATAGTCCCACTACCCAGG 58.575 60.000 0.00 0.00 32.84 4.45
5203 5318 1.062428 TCCCATAGTCCCACTACCCAG 60.062 57.143 0.00 0.00 32.84 4.45
5204 5319 1.020462 TCCCATAGTCCCACTACCCA 58.980 55.000 0.00 0.00 32.84 4.51
5205 5320 1.343681 TGTCCCATAGTCCCACTACCC 60.344 57.143 0.00 0.00 32.84 3.69
5206 5321 2.170012 TGTCCCATAGTCCCACTACC 57.830 55.000 0.00 0.00 32.84 3.18
5207 5322 4.772886 AATTGTCCCATAGTCCCACTAC 57.227 45.455 0.00 0.00 32.84 2.73
5208 5323 4.538490 ACAAATTGTCCCATAGTCCCACTA 59.462 41.667 0.00 0.00 34.82 2.74
5209 5324 3.333680 ACAAATTGTCCCATAGTCCCACT 59.666 43.478 0.00 0.00 0.00 4.00
5210 5325 3.697166 ACAAATTGTCCCATAGTCCCAC 58.303 45.455 0.00 0.00 0.00 4.61
5211 5326 4.396357 AACAAATTGTCCCATAGTCCCA 57.604 40.909 0.00 0.00 0.00 4.37
5212 5327 5.506708 ACTAACAAATTGTCCCATAGTCCC 58.493 41.667 0.00 0.00 0.00 4.46
5213 5328 8.747538 AATACTAACAAATTGTCCCATAGTCC 57.252 34.615 10.42 0.00 27.36 3.85
5245 5360 0.598065 AAAACGGAGCCATGAAGCAC 59.402 50.000 0.00 0.00 34.23 4.40
5300 5416 1.062581 TCTCCTCCATCTCCCTTGAGG 60.063 57.143 0.00 0.00 44.69 3.86
5490 5606 0.953727 GCTTGATCATGGCGGCAATA 59.046 50.000 18.31 7.52 0.00 1.90
5528 5644 3.000727 CCATAACCGTCCTGTTCTTCAC 58.999 50.000 0.00 0.00 0.00 3.18
5538 5654 4.628766 GTCTACAACTTTCCATAACCGTCC 59.371 45.833 0.00 0.00 0.00 4.79
5564 5680 7.118825 TGACTCTAGATTGTTGATCTTTTGCTG 59.881 37.037 0.00 0.00 42.55 4.41
5572 5688 8.939201 TGATCTTTGACTCTAGATTGTTGATC 57.061 34.615 0.00 4.24 31.46 2.92
5577 5693 6.876257 GGTGTTGATCTTTGACTCTAGATTGT 59.124 38.462 0.00 0.00 31.46 2.71
5583 5777 6.212589 TGGTATGGTGTTGATCTTTGACTCTA 59.787 38.462 0.00 0.00 0.00 2.43
5587 5781 4.142902 CGTGGTATGGTGTTGATCTTTGAC 60.143 45.833 0.00 0.00 0.00 3.18
5590 5784 4.280436 TCGTGGTATGGTGTTGATCTTT 57.720 40.909 0.00 0.00 0.00 2.52
5596 5790 3.562141 TGTTTCTTCGTGGTATGGTGTTG 59.438 43.478 0.00 0.00 0.00 3.33
5597 5791 3.811083 TGTTTCTTCGTGGTATGGTGTT 58.189 40.909 0.00 0.00 0.00 3.32
5603 5797 5.147330 TGAGTCATGTTTCTTCGTGGTAT 57.853 39.130 0.00 0.00 0.00 2.73
5661 5857 2.704572 AGACAGCTGGTTAATCTGCAC 58.295 47.619 19.93 9.89 34.63 4.57
5679 5875 4.080638 ACCATTTGCCTTGGTTTTCAAAGA 60.081 37.500 0.00 0.00 45.19 2.52
5680 5876 4.198530 ACCATTTGCCTTGGTTTTCAAAG 58.801 39.130 0.00 0.00 45.19 2.77
5681 5877 4.227864 ACCATTTGCCTTGGTTTTCAAA 57.772 36.364 0.00 0.00 45.19 2.69
5708 5904 4.917385 TGTATGAAGTTATTGTGCTGGGT 58.083 39.130 0.00 0.00 0.00 4.51
5715 5911 7.201609 CGTGCCATACTTGTATGAAGTTATTGT 60.202 37.037 18.99 0.00 0.00 2.71
5741 5939 7.698836 TGAAACCTTGTACTACGAAGTTAAC 57.301 36.000 0.00 0.00 37.78 2.01
5742 5940 8.767085 CATTGAAACCTTGTACTACGAAGTTAA 58.233 33.333 0.00 0.00 37.78 2.01
5749 5947 5.579511 CCCTACATTGAAACCTTGTACTACG 59.420 44.000 0.00 0.00 0.00 3.51
5751 5949 6.043474 ACACCCTACATTGAAACCTTGTACTA 59.957 38.462 0.00 0.00 0.00 1.82
5753 5951 5.067954 ACACCCTACATTGAAACCTTGTAC 58.932 41.667 0.00 0.00 0.00 2.90
5756 5954 5.411669 GTCTACACCCTACATTGAAACCTTG 59.588 44.000 0.00 0.00 0.00 3.61
5757 5955 5.072600 TGTCTACACCCTACATTGAAACCTT 59.927 40.000 0.00 0.00 0.00 3.50
5774 5976 8.903820 CATATGTATAATCTCGGGATGTCTACA 58.096 37.037 13.92 13.92 31.65 2.74
5840 6299 9.883142 TGGAACAAATCAACTTCTTTTAACATT 57.117 25.926 0.00 0.00 31.92 2.71
5860 6319 2.309613 AGCTGCTGATTTGTTGGAACA 58.690 42.857 0.00 0.00 37.08 3.18
5861 6320 3.375782 AAGCTGCTGATTTGTTGGAAC 57.624 42.857 1.35 0.00 0.00 3.62
5865 6324 4.835199 GCATTAAGCTGCTGATTTGTTG 57.165 40.909 1.35 0.00 41.15 3.33
5904 6364 5.163652 GCAACCCATATGTTTCTAGAACACC 60.164 44.000 4.18 0.00 32.37 4.16
5905 6365 5.163652 GGCAACCCATATGTTTCTAGAACAC 60.164 44.000 4.18 7.63 32.37 3.32
5925 6385 1.312371 GCGCCATCAGTAAAGGGCAA 61.312 55.000 0.00 0.00 46.75 4.52
5927 6387 1.718757 CTGCGCCATCAGTAAAGGGC 61.719 60.000 4.18 0.00 42.98 5.19
5928 6388 1.718757 GCTGCGCCATCAGTAAAGGG 61.719 60.000 4.18 0.00 36.49 3.95
5930 6390 1.939974 TAGCTGCGCCATCAGTAAAG 58.060 50.000 4.18 0.00 36.49 1.85
5932 6392 2.613595 CAAATAGCTGCGCCATCAGTAA 59.386 45.455 4.18 0.00 36.49 2.24
5934 6394 1.019673 CAAATAGCTGCGCCATCAGT 58.980 50.000 4.18 0.00 36.49 3.41
5935 6395 1.302366 TCAAATAGCTGCGCCATCAG 58.698 50.000 4.18 0.00 37.15 2.90
5936 6396 1.971481 ATCAAATAGCTGCGCCATCA 58.029 45.000 4.18 0.00 0.00 3.07
5937 6397 3.047796 CAAATCAAATAGCTGCGCCATC 58.952 45.455 4.18 0.00 0.00 3.51
5938 6398 2.428171 ACAAATCAAATAGCTGCGCCAT 59.572 40.909 4.18 0.00 0.00 4.40
5940 6400 2.187707 CACAAATCAAATAGCTGCGCC 58.812 47.619 4.18 0.00 0.00 6.53
5942 6402 2.866198 TGCACAAATCAAATAGCTGCG 58.134 42.857 0.00 0.00 0.00 5.18
5943 6403 5.789710 AATTGCACAAATCAAATAGCTGC 57.210 34.783 0.00 0.00 0.00 5.25
5944 6404 7.273164 TCGTTAATTGCACAAATCAAATAGCTG 59.727 33.333 0.00 0.00 0.00 4.24
5945 6405 7.312154 TCGTTAATTGCACAAATCAAATAGCT 58.688 30.769 0.00 0.00 0.00 3.32
5946 6406 7.504922 TCGTTAATTGCACAAATCAAATAGC 57.495 32.000 0.00 0.00 0.00 2.97
5949 6409 9.206870 AGAAATCGTTAATTGCACAAATCAAAT 57.793 25.926 0.00 0.00 0.00 2.32
5950 6410 8.486383 CAGAAATCGTTAATTGCACAAATCAAA 58.514 29.630 0.00 0.00 0.00 2.69
5951 6411 7.651304 ACAGAAATCGTTAATTGCACAAATCAA 59.349 29.630 0.00 0.00 0.00 2.57
5952 6412 7.144661 ACAGAAATCGTTAATTGCACAAATCA 58.855 30.769 0.00 0.00 0.00 2.57
5953 6413 7.325821 TGACAGAAATCGTTAATTGCACAAATC 59.674 33.333 0.00 0.00 0.00 2.17
5966 6426 6.873997 TGGTATCTACATGACAGAAATCGTT 58.126 36.000 0.00 0.00 0.00 3.85
5971 6431 8.073467 TGTGTATGGTATCTACATGACAGAAA 57.927 34.615 0.00 0.00 32.13 2.52
5980 6440 3.704061 TGCAGCTGTGTATGGTATCTACA 59.296 43.478 16.64 0.00 0.00 2.74
5987 6447 1.979855 TTGTTGCAGCTGTGTATGGT 58.020 45.000 16.64 0.00 0.00 3.55
6003 6464 6.150474 AGTGCGTTATAGGCAAAGTATTTTGT 59.850 34.615 11.77 0.00 44.41 2.83
6033 6511 4.056125 GCAGTTTGGGAAGGCGCC 62.056 66.667 21.89 21.89 0.00 6.53
6116 6594 4.750098 AGTACGTTGATATATGGCAGTTGC 59.250 41.667 0.00 0.00 41.14 4.17
6118 6596 5.510861 GGGAGTACGTTGATATATGGCAGTT 60.511 44.000 0.00 0.00 0.00 3.16
6119 6597 4.021368 GGGAGTACGTTGATATATGGCAGT 60.021 45.833 0.00 0.00 0.00 4.40
6120 6598 4.220821 AGGGAGTACGTTGATATATGGCAG 59.779 45.833 0.00 0.00 0.00 4.85
6121 6599 4.157246 AGGGAGTACGTTGATATATGGCA 58.843 43.478 0.00 0.00 0.00 4.92
6122 6600 4.463186 AGAGGGAGTACGTTGATATATGGC 59.537 45.833 0.00 0.00 0.00 4.40
6123 6601 5.477291 ACAGAGGGAGTACGTTGATATATGG 59.523 44.000 0.00 0.00 0.00 2.74
6124 6602 6.576662 ACAGAGGGAGTACGTTGATATATG 57.423 41.667 0.00 0.00 0.00 1.78
6126 6604 5.533903 GGAACAGAGGGAGTACGTTGATATA 59.466 44.000 0.00 0.00 0.00 0.86
6127 6605 4.341520 GGAACAGAGGGAGTACGTTGATAT 59.658 45.833 0.00 0.00 0.00 1.63
6128 6606 3.698040 GGAACAGAGGGAGTACGTTGATA 59.302 47.826 0.00 0.00 0.00 2.15
6129 6607 2.496470 GGAACAGAGGGAGTACGTTGAT 59.504 50.000 0.00 0.00 0.00 2.57
6130 6608 1.891150 GGAACAGAGGGAGTACGTTGA 59.109 52.381 0.00 0.00 0.00 3.18
6131 6609 1.402456 CGGAACAGAGGGAGTACGTTG 60.402 57.143 0.00 0.00 0.00 4.10
6133 6611 0.037303 TCGGAACAGAGGGAGTACGT 59.963 55.000 0.00 0.00 0.00 3.57
6134 6612 1.171308 TTCGGAACAGAGGGAGTACG 58.829 55.000 0.00 0.00 0.00 3.67
6135 6613 3.889520 AATTCGGAACAGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
6136 6614 4.607239 AGTAATTCGGAACAGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
6145 6631 4.022068 ACCTACGACAAGTAATTCGGAACA 60.022 41.667 0.00 0.00 39.63 3.18
6150 6636 5.824429 TCCATACCTACGACAAGTAATTCG 58.176 41.667 0.00 0.00 41.14 3.34
6210 6696 4.556135 CGTTCTAAATTACTCGTCGCAGAA 59.444 41.667 0.00 0.00 39.69 3.02
6213 6699 3.119884 TCCGTTCTAAATTACTCGTCGCA 60.120 43.478 0.00 0.00 0.00 5.10
6214 6700 3.429085 TCCGTTCTAAATTACTCGTCGC 58.571 45.455 0.00 0.00 0.00 5.19
6215 6701 4.033684 CCTCCGTTCTAAATTACTCGTCG 58.966 47.826 0.00 0.00 0.00 5.12
6217 6703 4.019174 TCCCTCCGTTCTAAATTACTCGT 58.981 43.478 0.00 0.00 0.00 4.18
6219 6705 5.595257 ACTCCCTCCGTTCTAAATTACTC 57.405 43.478 0.00 0.00 0.00 2.59
6227 6713 2.097825 GCAAGTACTCCCTCCGTTCTA 58.902 52.381 0.00 0.00 0.00 2.10
6228 6714 0.896226 GCAAGTACTCCCTCCGTTCT 59.104 55.000 0.00 0.00 0.00 3.01
6281 6776 2.711978 ATGATGCATGCAGTCAGACT 57.288 45.000 26.69 7.01 0.00 3.24
6365 6860 2.505364 ATTGCAGGGAGGGCCTTGTC 62.505 60.000 7.89 0.06 42.90 3.18
6405 6903 2.934553 CTCATGATTCTCTGCGCAAGAA 59.065 45.455 26.08 26.08 43.02 2.52
6409 6907 1.205417 TCACTCATGATTCTCTGCGCA 59.795 47.619 10.98 10.98 0.00 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.